Query psy9409
Match_columns 472
No_of_seqs 501 out of 3347
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0486 ThdF Predicted GTPase 100.0 4E-120 8E-125 907.6 50.8 449 4-472 3-454 (454)
2 PRK05291 trmE tRNA modificatio 100.0 7E-108 2E-112 851.6 51.4 446 3-472 2-449 (449)
3 TIGR00450 mnmE_trmE_thdF tRNA 100.0 6E-104 1E-108 817.5 50.9 435 12-472 1-442 (442)
4 KOG1191|consensus 100.0 9.7E-80 2.1E-84 612.8 33.9 451 7-472 43-531 (531)
5 PF10396 TrmE_N: GTP-binding p 100.0 1.1E-49 2.3E-54 331.0 12.4 114 7-127 1-114 (114)
6 TIGR03156 GTP_HflX GTP-binding 100.0 1.1E-29 2.4E-34 256.5 24.7 232 142-387 107-350 (351)
7 COG1160 Predicted GTPases [Gen 99.9 1.2E-25 2.6E-30 225.9 11.9 271 111-389 41-351 (444)
8 PRK11058 GTPase HflX; Provisio 99.9 4.2E-24 9E-29 220.7 22.7 230 146-389 120-362 (426)
9 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-25 2.9E-30 199.7 9.8 150 225-384 1-156 (156)
10 COG1159 Era GTPase [General fu 99.9 4.6E-24 1E-28 204.0 17.9 157 226-390 8-173 (298)
11 TIGR00436 era GTP-binding prot 99.9 1.9E-23 4.1E-28 204.8 18.7 156 226-390 2-165 (270)
12 COG1160 Predicted GTPases [Gen 99.9 6.8E-24 1.5E-28 213.3 14.1 158 225-389 4-165 (444)
13 cd01878 HflX HflX subfamily. 99.9 1.1E-22 2.3E-27 190.9 20.1 188 193-388 7-204 (204)
14 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-22 3.5E-27 180.2 17.7 156 224-388 1-156 (157)
15 COG2262 HflX GTPases [General 99.9 1.1E-21 2.5E-26 194.5 22.7 228 147-390 116-357 (411)
16 cd04142 RRP22 RRP22 subfamily. 99.9 4.3E-22 9.3E-27 186.2 16.7 158 225-390 1-175 (198)
17 PRK15494 era GTPase Era; Provi 99.9 7.6E-22 1.6E-26 199.1 18.9 159 224-390 52-217 (339)
18 KOG0092|consensus 99.9 2.7E-22 5.9E-27 179.0 12.7 151 224-390 5-168 (200)
19 KOG0084|consensus 99.9 7.7E-22 1.7E-26 176.8 13.5 150 224-389 9-172 (205)
20 PRK03003 GTP-binding protein D 99.9 1.5E-21 3.1E-26 205.8 17.3 162 223-389 210-382 (472)
21 cd04136 Rap_like Rap-like subf 99.9 1E-21 2.3E-26 176.6 14.0 147 225-388 2-162 (163)
22 PRK00089 era GTPase Era; Revie 99.9 5.8E-21 1.3E-25 189.4 19.7 157 226-390 7-172 (292)
23 cd01861 Rab6 Rab6 subfamily. 99.9 3.3E-21 7.1E-26 173.2 15.1 147 225-387 1-160 (161)
24 cd04120 Rab12 Rab12 subfamily. 99.9 4.1E-21 8.8E-26 180.0 15.9 149 225-389 1-163 (202)
25 TIGR03594 GTPase_EngA ribosome 99.9 4.4E-21 9.6E-26 200.3 17.8 162 223-389 171-344 (429)
26 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 4.4E-21 9.4E-26 173.6 15.2 148 225-388 3-163 (166)
27 cd01865 Rab3 Rab3 subfamily. 99.9 5.3E-21 1.1E-25 173.2 15.6 149 225-389 2-163 (165)
28 cd01867 Rab8_Rab10_Rab13_like 99.9 4.3E-21 9.4E-26 174.1 14.9 149 225-389 4-165 (167)
29 cd04121 Rab40 Rab40 subfamily. 99.9 4.6E-21 9.9E-26 177.9 15.3 150 224-389 6-167 (189)
30 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.6E-21 1E-25 172.6 15.0 147 225-388 3-163 (164)
31 cd04175 Rap1 Rap1 subgroup. T 99.9 3.6E-21 7.7E-26 173.9 14.2 147 225-388 2-162 (164)
32 smart00173 RAS Ras subfamily o 99.9 3.9E-21 8.5E-26 173.4 14.3 148 225-389 1-162 (164)
33 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.9E-21 1.1E-25 171.6 14.9 147 225-388 2-161 (162)
34 PRK00093 GTP-binding protein D 99.9 7.4E-21 1.6E-25 199.0 18.4 163 222-389 171-344 (435)
35 cd04109 Rab28 Rab28 subfamily. 99.9 4.9E-21 1.1E-25 181.4 15.3 150 225-390 1-167 (215)
36 cd01868 Rab11_like Rab11-like. 99.9 5.4E-21 1.2E-25 172.8 14.9 148 225-388 4-164 (165)
37 cd01898 Obg Obg subfamily. Th 99.9 2.2E-21 4.7E-26 176.0 12.2 153 226-387 2-169 (170)
38 cd04148 RGK RGK subfamily. Th 99.9 7E-21 1.5E-25 181.1 16.1 179 225-421 1-200 (221)
39 cd04122 Rab14 Rab14 subfamily. 99.9 6.8E-21 1.5E-25 172.6 15.2 147 225-388 3-163 (166)
40 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 6.3E-21 1.4E-25 174.3 15.1 150 224-390 2-165 (172)
41 cd01897 NOG NOG1 is a nucleola 99.9 5.8E-21 1.3E-25 172.9 14.6 157 225-388 1-167 (168)
42 cd04119 RJL RJL (RabJ-Like) su 99.9 7.5E-21 1.6E-25 171.5 15.1 148 225-388 1-166 (168)
43 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5.9E-21 1.3E-25 178.9 14.9 149 225-389 1-168 (201)
44 cd04106 Rab23_lke Rab23-like s 99.9 7E-21 1.5E-25 171.2 14.6 147 225-387 1-161 (162)
45 cd04112 Rab26 Rab26 subfamily. 99.9 7.8E-21 1.7E-25 176.6 15.2 151 225-390 1-164 (191)
46 cd01895 EngA2 EngA2 subfamily. 99.9 1.2E-20 2.7E-25 170.5 16.2 159 224-387 2-173 (174)
47 cd04127 Rab27A Rab27a subfamil 99.9 6.2E-21 1.3E-25 175.0 14.3 148 225-388 5-176 (180)
48 PRK12299 obgE GTPase CgtA; Rev 99.9 5.9E-21 1.3E-25 191.5 15.2 157 225-390 159-329 (335)
49 cd04117 Rab15 Rab15 subfamily. 99.9 1.2E-20 2.6E-25 170.4 15.6 147 225-387 1-160 (161)
50 cd01894 EngA1 EngA1 subfamily. 99.9 1.1E-20 2.4E-25 168.4 15.2 152 228-388 1-157 (157)
51 cd01864 Rab19 Rab19 subfamily. 99.9 1.2E-20 2.6E-25 170.6 14.9 148 224-387 3-164 (165)
52 cd04144 Ras2 Ras2 subfamily. 99.9 5.6E-21 1.2E-25 177.4 12.9 147 226-389 1-163 (190)
53 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.2E-20 2.5E-25 173.1 14.8 146 225-387 2-173 (175)
54 cd04113 Rab4 Rab4 subfamily. 99.8 1.7E-20 3.6E-25 168.8 14.8 147 225-387 1-160 (161)
55 cd04133 Rop_like Rop subfamily 99.8 1.5E-20 3.3E-25 172.4 14.8 148 225-389 2-173 (176)
56 cd01866 Rab2 Rab2 subfamily. 99.8 2.1E-20 4.5E-25 169.9 15.3 148 225-388 5-165 (168)
57 cd04176 Rap2 Rap2 subgroup. T 99.8 1.1E-20 2.4E-25 170.3 13.4 147 225-388 2-162 (163)
58 cd04140 ARHI_like ARHI subfami 99.8 1E-20 2.2E-25 171.4 13.1 146 225-387 2-163 (165)
59 cd04124 RabL2 RabL2 subfamily. 99.8 2.3E-20 4.9E-25 168.5 15.3 148 225-388 1-157 (161)
60 KOG0094|consensus 99.8 1.4E-20 3.1E-25 168.0 13.6 150 225-390 23-186 (221)
61 smart00175 RAB Rab subfamily o 99.8 2.4E-20 5.1E-25 167.8 15.3 149 225-389 1-162 (164)
62 PRK03003 GTP-binding protein D 99.8 1.7E-20 3.7E-25 197.7 16.6 158 223-389 37-199 (472)
63 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2.6E-20 5.6E-25 169.9 14.8 148 226-389 2-165 (170)
64 TIGR03594 GTPase_EngA ribosome 99.8 2.4E-20 5.3E-25 194.8 16.3 155 226-389 1-160 (429)
65 cd01871 Rac1_like Rac1-like su 99.8 2.9E-20 6.4E-25 170.2 14.8 146 225-387 2-173 (174)
66 cd00877 Ran Ran (Ras-related n 99.8 4.1E-20 9E-25 167.8 15.4 150 225-390 1-160 (166)
67 KOG0078|consensus 99.8 2.3E-20 5E-25 169.7 13.5 152 222-389 10-174 (207)
68 cd04126 Rab20 Rab20 subfamily. 99.8 3.3E-20 7.1E-25 175.9 15.1 146 225-389 1-190 (220)
69 cd01892 Miro2 Miro2 subfamily. 99.8 2.9E-20 6.2E-25 169.4 14.2 153 222-389 2-166 (169)
70 cd01860 Rab5_related Rab5-rela 99.8 3E-20 6.4E-25 167.3 13.8 148 225-388 2-162 (163)
71 cd04110 Rab35 Rab35 subfamily. 99.8 4.7E-20 1E-24 172.6 15.6 150 224-389 6-167 (199)
72 cd04131 Rnd Rnd subfamily. Th 99.8 4.3E-20 9.3E-25 169.8 15.0 146 225-387 2-174 (178)
73 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 3.7E-20 8E-25 170.8 14.6 147 224-387 5-178 (182)
74 PTZ00369 Ras-like protein; Pro 99.8 3.4E-20 7.4E-25 172.0 14.4 149 224-389 5-167 (189)
75 cd04149 Arf6 Arf6 subfamily. 99.8 4.2E-20 9E-25 168.2 14.6 145 223-386 8-167 (168)
76 cd04171 SelB SelB subfamily. 99.8 4.3E-20 9.4E-25 166.0 14.5 146 225-386 1-163 (164)
77 cd04128 Spg1 Spg1p. Spg1p (se 99.8 5.9E-20 1.3E-24 169.5 15.7 149 225-390 1-167 (182)
78 cd01879 FeoB Ferrous iron tran 99.8 3.4E-20 7.4E-25 165.7 13.6 150 229-388 1-156 (158)
79 cd01863 Rab18 Rab18 subfamily. 99.8 3.5E-20 7.5E-25 166.6 13.7 147 225-387 1-160 (161)
80 cd04111 Rab39 Rab39 subfamily. 99.8 3.9E-20 8.4E-25 174.8 14.4 149 225-389 3-166 (211)
81 cd01875 RhoG RhoG subfamily. 99.8 5.1E-20 1.1E-24 171.2 15.0 150 224-390 3-178 (191)
82 cd04118 Rab24 Rab24 subfamily. 99.8 8E-20 1.7E-24 169.8 16.2 149 225-389 1-166 (193)
83 cd04132 Rho4_like Rho4-like su 99.8 5.3E-20 1.1E-24 170.0 14.8 148 225-389 1-167 (187)
84 cd04125 RabA_like RabA-like su 99.8 8.1E-20 1.7E-24 169.2 16.0 149 225-389 1-162 (188)
85 COG0370 FeoB Fe2+ transport sy 99.8 4.2E-20 9.2E-25 193.8 15.7 157 225-391 4-166 (653)
86 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.7E-20 1E-24 166.3 13.8 143 225-386 1-158 (159)
87 PLN03110 Rab GTPase; Provision 99.8 7.4E-20 1.6E-24 173.5 15.8 150 224-389 12-174 (216)
88 smart00174 RHO Rho (Ras homolo 99.8 5.9E-20 1.3E-24 167.4 14.3 145 227-388 1-171 (174)
89 PLN03118 Rab family protein; P 99.8 5E-20 1.1E-24 173.9 14.2 151 223-390 13-178 (211)
90 cd04154 Arl2 Arl2 subfamily. 99.8 4.9E-20 1.1E-24 168.2 13.7 145 223-386 13-172 (173)
91 PRK09518 bifunctional cytidyla 99.8 7.1E-20 1.5E-24 201.8 17.6 162 223-389 449-621 (712)
92 cd04134 Rho3 Rho3 subfamily. 99.8 6.7E-20 1.4E-24 170.1 14.7 148 226-390 2-175 (189)
93 cd04101 RabL4 RabL4 (Rab-like4 99.8 9.2E-20 2E-24 164.4 15.2 148 225-388 1-163 (164)
94 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4E-20 8.7E-25 167.3 12.6 146 226-386 1-166 (167)
95 smart00177 ARF ARF-like small 99.8 9.6E-20 2.1E-24 166.9 15.2 147 223-388 12-173 (175)
96 PLN03071 GTP-binding nuclear p 99.8 6.6E-20 1.4E-24 174.2 14.6 151 223-389 12-172 (219)
97 cd04123 Rab21 Rab21 subfamily. 99.8 1.1E-19 2.3E-24 163.0 15.1 148 225-388 1-161 (162)
98 PRK09518 bifunctional cytidyla 99.8 3.7E-19 8E-24 196.1 22.4 157 225-389 276-436 (712)
99 cd04139 RalA_RalB RalA/RalB su 99.8 8.9E-20 1.9E-24 163.9 14.5 147 225-388 1-161 (164)
100 PRK09554 feoB ferrous iron tra 99.8 3.4E-19 7.3E-24 195.9 21.9 160 224-389 3-168 (772)
101 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.1E-19 2.4E-24 173.4 15.5 149 224-389 13-188 (232)
102 KOG0394|consensus 99.8 3.5E-20 7.6E-25 163.9 10.9 152 222-389 7-178 (210)
103 cd04135 Tc10 TC10 subfamily. 99.8 1.2E-19 2.5E-24 165.4 14.9 147 225-388 1-173 (174)
104 PRK12297 obgE GTPase CgtA; Rev 99.8 8.1E-20 1.7E-24 187.9 15.3 157 225-390 159-328 (424)
105 TIGR02729 Obg_CgtA Obg family 99.8 5.7E-20 1.2E-24 184.3 13.9 155 225-388 158-328 (329)
106 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.3E-19 2.8E-24 165.0 14.9 149 225-388 3-168 (170)
107 cd01862 Rab7 Rab7 subfamily. 99.8 1.5E-19 3.1E-24 164.1 15.1 149 225-389 1-167 (172)
108 cd04163 Era Era subfamily. Er 99.8 2.6E-19 5.6E-24 160.4 16.6 156 224-387 3-167 (168)
109 cd04143 Rhes_like Rhes_like su 99.8 8.9E-20 1.9E-24 176.1 14.4 148 225-389 1-171 (247)
110 PLN00223 ADP-ribosylation fact 99.8 1.2E-19 2.6E-24 167.4 14.6 148 223-389 16-178 (181)
111 cd04177 RSR1 RSR1 subgroup. R 99.8 1.1E-19 2.5E-24 164.9 14.2 147 225-388 2-163 (168)
112 PRK12298 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.9E-24 185.3 16.3 156 226-390 161-334 (390)
113 cd04157 Arl6 Arl6 subfamily. 99.8 8.4E-20 1.8E-24 164.1 13.0 142 226-386 1-161 (162)
114 cd04116 Rab9 Rab9 subfamily. 99.8 1.6E-19 3.4E-24 164.1 14.9 148 224-387 5-169 (170)
115 cd04158 ARD1 ARD1 subfamily. 99.8 1.2E-19 2.6E-24 165.2 14.0 145 226-389 1-161 (169)
116 PTZ00133 ADP-ribosylation fact 99.8 1.4E-19 3E-24 167.0 14.5 149 222-389 15-178 (182)
117 PRK12296 obgE GTPase CgtA; Rev 99.8 1.2E-19 2.5E-24 189.0 15.4 156 225-389 160-340 (500)
118 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.5E-19 3.3E-24 165.0 14.5 144 225-385 1-170 (173)
119 cd01890 LepA LepA subfamily. 99.8 1.1E-19 2.4E-24 166.4 13.4 148 226-388 2-176 (179)
120 KOG1423|consensus 99.8 3.3E-19 7.1E-24 169.6 16.8 165 223-391 71-273 (379)
121 cd04146 RERG_RasL11_like RERG/ 99.8 5.9E-20 1.3E-24 166.1 11.4 147 226-388 1-163 (165)
122 PRK00093 GTP-binding protein D 99.8 1.6E-19 3.6E-24 188.8 16.3 153 225-386 2-159 (435)
123 cd04114 Rab30 Rab30 subfamily. 99.8 2.5E-19 5.4E-24 162.4 15.3 148 225-388 8-168 (169)
124 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.5E-19 3.3E-24 166.8 14.1 149 224-389 3-170 (183)
125 PLN03108 Rab family protein; P 99.8 2.4E-19 5.2E-24 169.2 15.3 150 224-389 6-168 (210)
126 cd04151 Arl1 Arl1 subfamily. 99.8 1.9E-19 4.1E-24 161.7 13.3 142 226-386 1-157 (158)
127 cd01881 Obg_like The Obg-like 99.8 5.9E-20 1.3E-24 167.2 10.0 150 229-387 1-175 (176)
128 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.6E-19 3.5E-24 162.1 12.5 142 226-386 1-159 (160)
129 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.8E-19 6.2E-24 163.5 14.0 145 223-386 14-173 (174)
130 cd01893 Miro1 Miro1 subfamily. 99.8 2.7E-19 5.9E-24 162.2 13.7 147 225-389 1-164 (166)
131 KOG0098|consensus 99.8 1.5E-19 3.3E-24 160.2 11.6 149 224-388 6-167 (216)
132 cd04147 Ras_dva Ras-dva subfam 99.8 3.7E-19 8.1E-24 166.3 14.7 147 226-389 1-163 (198)
133 cd00876 Ras Ras family. The R 99.8 2.4E-19 5.2E-24 160.3 12.8 145 226-387 1-159 (160)
134 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 3.3E-19 7.2E-24 169.2 14.2 147 225-388 2-175 (222)
135 cd00157 Rho Rho (Ras homology) 99.8 2.5E-19 5.5E-24 162.4 12.5 145 225-386 1-170 (171)
136 cd01889 SelB_euk SelB subfamil 99.8 2.7E-19 5.8E-24 166.4 12.9 148 225-389 1-186 (192)
137 cd00154 Rab Rab family. Rab G 99.8 3.1E-19 6.7E-24 158.6 12.6 145 225-385 1-158 (159)
138 COG1084 Predicted GTPase [Gene 99.8 3.1E-18 6.7E-23 165.4 20.3 157 223-388 167-335 (346)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.3E-19 1.4E-23 159.3 14.8 146 226-388 2-165 (168)
140 cd04103 Centaurin_gamma Centau 99.8 3.4E-19 7.4E-24 160.6 12.7 140 225-387 1-157 (158)
141 PRK04213 GTP-binding protein; 99.8 5.3E-19 1.1E-23 165.4 14.4 160 223-389 8-192 (201)
142 smart00178 SAR Sar1p-like memb 99.8 4.8E-19 1E-23 163.7 13.9 147 222-387 15-183 (184)
143 cd00879 Sar1 Sar1 subfamily. 99.8 5.5E-19 1.2E-23 163.6 14.0 146 223-387 18-189 (190)
144 cd00878 Arf_Arl Arf (ADP-ribos 99.8 5.8E-19 1.3E-23 158.3 13.3 142 226-386 1-157 (158)
145 cd01870 RhoA_like RhoA-like su 99.8 1E-18 2.2E-23 159.4 14.5 147 225-388 2-174 (175)
146 cd01873 RhoBTB RhoBTB subfamil 99.8 1.1E-18 2.3E-23 162.9 14.8 147 224-387 2-194 (195)
147 smart00176 RAN Ran (Ras-relate 99.8 9.6E-19 2.1E-23 163.7 14.4 144 230-389 1-154 (200)
148 cd04155 Arl3 Arl3 subfamily. 99.8 9.9E-19 2.1E-23 159.2 14.1 145 223-386 13-172 (173)
149 cd04137 RheB Rheb (Ras Homolog 99.8 1E-18 2.2E-23 160.3 14.2 149 225-390 2-164 (180)
150 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 7.9E-19 1.7E-23 159.1 12.9 142 227-386 2-163 (164)
151 KOG0080|consensus 99.8 4.3E-19 9.4E-24 153.3 10.3 148 224-388 11-173 (209)
152 KOG0087|consensus 99.8 7.4E-19 1.6E-23 159.2 11.6 151 222-388 12-175 (222)
153 PF00071 Ras: Ras family; Int 99.8 1.4E-18 3.1E-23 156.3 13.5 147 226-388 1-160 (162)
154 KOG0079|consensus 99.8 3.5E-19 7.5E-24 151.8 8.6 148 225-388 9-168 (198)
155 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.5E-18 5.3E-23 156.3 13.9 142 226-386 1-166 (167)
156 cd04159 Arl10_like Arl10-like 99.8 2.5E-18 5.4E-23 152.9 13.6 142 227-386 2-158 (159)
157 TIGR00231 small_GTP small GTP- 99.8 4.6E-18 9.9E-23 150.4 15.2 151 225-385 2-160 (161)
158 cd00881 GTP_translation_factor 99.8 2.3E-18 4.9E-23 158.4 13.4 148 226-389 1-187 (189)
159 TIGR00437 feoB ferrous iron tr 99.8 1.9E-18 4.2E-23 185.8 14.6 148 231-388 1-154 (591)
160 TIGR02528 EutP ethanolamine ut 99.8 1.6E-18 3.4E-23 152.8 11.3 133 226-385 2-141 (142)
161 cd01896 DRG The developmentall 99.8 6.2E-18 1.4E-22 162.0 14.7 155 226-389 2-226 (233)
162 cd04129 Rho2 Rho2 subfamily. 99.8 6.2E-18 1.4E-22 156.5 13.9 148 225-389 2-173 (187)
163 cd01891 TypA_BipA TypA (tyrosi 99.8 4E-18 8.6E-23 158.8 12.6 139 226-380 4-173 (194)
164 PRK15467 ethanolamine utilizat 99.8 6.4E-18 1.4E-22 152.3 13.4 140 226-390 3-148 (158)
165 KOG0093|consensus 99.8 5.2E-18 1.1E-22 144.5 11.2 150 225-390 22-184 (193)
166 cd00880 Era_like Era (E. coli 99.8 1.4E-17 3E-22 147.3 14.3 151 229-387 1-162 (163)
167 KOG0095|consensus 99.8 5.6E-18 1.2E-22 144.5 10.7 148 225-388 8-168 (213)
168 PF01926 MMR_HSR1: 50S ribosom 99.7 1.2E-17 2.7E-22 142.3 12.5 115 226-348 1-116 (116)
169 COG1163 DRG Predicted GTPase [ 99.7 1.9E-17 4.2E-22 159.2 14.5 186 193-389 27-289 (365)
170 cd01886 EF-G Elongation factor 99.7 7.1E-18 1.5E-22 164.8 11.2 222 226-466 1-265 (270)
171 PRK00454 engB GTP-binding prot 99.7 4.5E-17 9.8E-22 151.4 16.0 159 222-389 22-194 (196)
172 PF00025 Arf: ADP-ribosylation 99.7 2.9E-17 6.4E-22 150.5 14.5 148 222-388 12-175 (175)
173 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.8E-18 1.7E-22 158.7 10.2 140 226-381 1-186 (208)
174 TIGR03598 GTPase_YsxC ribosome 99.7 1.9E-17 4.2E-22 152.1 12.6 151 222-378 16-179 (179)
175 PF00009 GTP_EFTU: Elongation 99.7 4.7E-18 1E-22 157.6 8.3 149 225-389 4-187 (188)
176 KOG1489|consensus 99.7 9.2E-18 2E-22 160.7 9.4 154 225-387 197-365 (366)
177 COG0218 Predicted GTPase [Gene 99.7 1.4E-16 3E-21 145.1 16.4 159 223-389 23-197 (200)
178 PTZ00132 GTP-binding nuclear p 99.7 2.6E-16 5.7E-21 148.9 18.6 152 223-390 8-169 (215)
179 cd01888 eIF2_gamma eIF2-gamma 99.7 3.2E-17 6.9E-22 153.9 12.1 149 225-390 1-200 (203)
180 KOG0086|consensus 99.7 3E-17 6.4E-22 140.7 10.6 148 225-388 10-170 (214)
181 PRK05306 infB translation init 99.7 7.7E-17 1.7E-21 176.6 16.0 149 221-386 287-449 (787)
182 TIGR00487 IF-2 translation ini 99.7 8.8E-17 1.9E-21 172.2 15.8 148 222-386 85-247 (587)
183 KOG0395|consensus 99.7 7.2E-17 1.6E-21 150.1 13.0 150 224-390 3-166 (196)
184 cd04170 EF-G_bact Elongation f 99.7 4.3E-17 9.4E-22 159.7 11.8 224 226-466 1-263 (268)
185 KOG0088|consensus 99.7 8.9E-18 1.9E-22 144.7 4.8 149 224-388 13-174 (218)
186 TIGR01393 lepA GTP-binding pro 99.7 1.3E-16 2.9E-21 171.5 14.4 150 226-390 5-181 (595)
187 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.4E-16 3E-21 148.5 12.4 139 224-378 2-172 (195)
188 KOG0091|consensus 99.7 2.8E-17 6E-22 142.5 7.0 149 224-388 8-172 (213)
189 cd04102 RabL3 RabL3 (Rab-like3 99.7 2.1E-16 4.5E-21 148.0 13.1 134 225-374 1-175 (202)
190 PRK12317 elongation factor 1-a 99.7 9.2E-17 2E-21 167.5 11.9 143 223-381 5-197 (425)
191 TIGR00475 selB selenocysteine- 99.7 2E-16 4.3E-21 170.1 14.8 149 225-390 1-167 (581)
192 CHL00189 infB translation init 99.7 1.8E-16 3.8E-21 172.3 14.1 151 221-388 241-409 (742)
193 KOG0073|consensus 99.7 1.4E-15 3E-20 132.4 14.9 147 224-389 16-178 (185)
194 cd01876 YihA_EngB The YihA (En 99.7 2.6E-15 5.6E-20 134.8 15.1 156 226-388 1-170 (170)
195 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.4E-15 5.3E-20 140.3 15.1 160 225-390 1-185 (196)
196 cd00882 Ras_like_GTPase Ras-li 99.6 7.2E-16 1.6E-20 134.6 10.5 141 229-385 1-156 (157)
197 cd01899 Ygr210 Ygr210 subfamil 99.6 3.8E-15 8.2E-20 148.4 16.5 155 227-390 1-270 (318)
198 cd04168 TetM_like Tet(M)-like 99.6 1.5E-15 3.3E-20 145.8 12.7 114 226-355 1-132 (237)
199 PRK05433 GTP-binding protein L 99.6 1.6E-15 3.5E-20 163.4 14.3 151 225-390 8-185 (600)
200 TIGR00484 EF-G translation elo 99.6 1.3E-15 2.8E-20 167.6 13.4 223 225-466 11-276 (689)
201 COG3596 Predicted GTPase [Gene 99.6 7.8E-15 1.7E-19 138.9 16.5 160 222-390 37-223 (296)
202 KOG0410|consensus 99.6 3.2E-15 7E-20 143.4 13.7 183 196-389 148-341 (410)
203 PRK09866 hypothetical protein; 99.6 1E-13 2.3E-18 145.4 26.0 106 272-388 230-352 (741)
204 KOG0083|consensus 99.6 1.3E-16 2.9E-21 133.7 3.6 146 229-389 2-160 (192)
205 TIGR00491 aIF-2 translation in 99.6 3.1E-15 6.8E-20 160.0 14.4 144 225-386 5-213 (590)
206 cd01883 EF1_alpha Eukaryotic e 99.6 1E-15 2.2E-20 145.5 9.2 137 226-378 1-194 (219)
207 KOG0081|consensus 99.6 2.2E-16 4.7E-21 136.3 4.0 148 225-388 10-180 (219)
208 KOG0075|consensus 99.6 8.7E-15 1.9E-19 125.0 13.6 151 221-389 17-182 (186)
209 PRK10512 selenocysteinyl-tRNA- 99.6 5.1E-15 1.1E-19 159.7 15.0 148 226-389 2-166 (614)
210 COG0536 Obg Predicted GTPase [ 99.6 1.5E-15 3.3E-20 147.4 9.7 156 226-390 161-334 (369)
211 PRK10218 GTP-binding protein; 99.6 9E-15 2E-19 157.0 16.7 151 225-391 6-197 (607)
212 TIGR00483 EF-1_alpha translati 99.6 3.5E-15 7.6E-20 155.6 12.8 143 222-380 5-198 (426)
213 CHL00071 tufA elongation facto 99.6 3.3E-15 7.1E-20 154.8 12.5 139 222-376 10-180 (409)
214 cd04169 RF3 RF3 subfamily. Pe 99.6 4E-15 8.8E-20 145.3 12.2 147 226-388 4-179 (267)
215 PRK12736 elongation factor Tu; 99.6 4.8E-15 1E-19 152.9 12.9 153 221-389 9-201 (394)
216 PRK00007 elongation factor G; 99.6 3.2E-15 7E-20 164.4 12.3 225 225-466 11-277 (693)
217 PF12631 GTPase_Cys_C: Catalyt 99.6 2.9E-15 6.3E-20 116.5 8.3 68 397-469 6-73 (73)
218 TIGR01394 TypA_BipA GTP-bindin 99.6 8.9E-15 1.9E-19 157.2 15.0 150 226-391 3-193 (594)
219 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.1E-14 2.4E-19 138.6 13.3 145 226-386 1-220 (224)
220 KOG0097|consensus 99.6 6.9E-15 1.5E-19 124.6 10.2 148 224-388 11-172 (215)
221 PRK12735 elongation factor Tu; 99.6 1.2E-14 2.5E-19 150.1 13.0 153 221-389 9-203 (396)
222 PRK09602 translation-associate 99.6 4.6E-14 9.9E-19 144.8 17.2 157 225-390 2-272 (396)
223 KOG0393|consensus 99.6 5.7E-15 1.2E-19 135.1 9.0 148 224-389 4-179 (198)
224 TIGR03680 eif2g_arch translati 99.6 9.4E-15 2E-19 151.3 11.7 151 223-389 3-196 (406)
225 COG1100 GTPase SAR1 and relate 99.6 3.6E-14 7.8E-19 134.2 14.8 149 225-389 6-185 (219)
226 PLN03127 Elongation factor Tu; 99.6 2.7E-14 5.8E-19 148.9 15.1 153 221-389 58-252 (447)
227 PRK00049 elongation factor Tu; 99.6 2.1E-14 4.6E-19 148.1 13.3 152 222-389 10-203 (396)
228 TIGR00485 EF-Tu translation el 99.6 2.3E-14 4.9E-19 148.0 13.0 150 222-387 10-199 (394)
229 PRK05124 cysN sulfate adenylyl 99.6 1.7E-14 3.6E-19 151.8 12.1 144 222-381 25-217 (474)
230 PRK04000 translation initiatio 99.6 2.4E-14 5.3E-19 148.2 13.0 152 222-389 7-201 (411)
231 PRK09435 membrane ATPase/prote 99.6 1.9E-13 4E-18 136.5 18.5 175 223-422 55-290 (332)
232 PF08477 Miro: Miro-like prote 99.6 4.1E-15 8.8E-20 126.9 5.7 110 226-350 1-119 (119)
233 TIGR02034 CysN sulfate adenyly 99.6 2.1E-14 4.6E-19 148.5 12.0 140 225-380 1-188 (406)
234 PLN00023 GTP-binding protein; 99.6 2.1E-14 4.5E-19 141.6 11.2 116 223-354 20-166 (334)
235 cd04104 p47_IIGP_like p47 (47- 99.5 5.2E-14 1.1E-18 131.5 13.2 152 224-389 1-184 (197)
236 cd01853 Toc34_like Toc34-like 99.5 1.1E-13 2.3E-18 133.7 15.6 131 221-356 28-166 (249)
237 cd04105 SR_beta Signal recogni 99.5 4.9E-14 1.1E-18 132.3 12.9 113 226-355 2-125 (203)
238 PRK12739 elongation factor G; 99.5 4.2E-14 9.1E-19 155.7 13.9 135 225-375 9-170 (691)
239 PF10662 PduV-EutP: Ethanolami 99.5 4.2E-14 9.1E-19 123.4 10.9 133 226-385 3-142 (143)
240 PRK05506 bifunctional sulfate 99.5 3E-14 6.4E-19 155.5 12.3 142 222-379 22-211 (632)
241 PRK04004 translation initiatio 99.5 6.1E-14 1.3E-18 150.7 14.3 143 224-386 6-215 (586)
242 PLN03126 Elongation factor Tu; 99.5 8.2E-14 1.8E-18 146.1 13.8 141 221-377 78-250 (478)
243 cd04167 Snu114p Snu114p subfam 99.5 8.2E-14 1.8E-18 131.8 11.8 111 226-352 2-136 (213)
244 PTZ00258 GTP-binding protein; 99.5 1.5E-13 3.3E-18 139.6 13.8 92 221-321 18-126 (390)
245 KOG0462|consensus 99.5 1.2E-13 2.6E-18 140.8 12.3 152 226-392 62-238 (650)
246 PTZ00099 rab6; Provisional 99.5 2.2E-13 4.7E-18 125.0 12.7 121 255-390 10-143 (176)
247 TIGR00750 lao LAO/AO transport 99.5 1.3E-12 2.8E-17 130.0 18.8 129 270-423 125-269 (300)
248 KOG1707|consensus 99.5 5.4E-14 1.2E-18 144.5 8.4 183 222-426 7-207 (625)
249 PRK00741 prfC peptide chain re 99.5 3E-13 6.4E-18 143.7 13.8 114 225-354 11-146 (526)
250 KOG3883|consensus 99.5 5E-13 1.1E-17 115.0 12.4 158 220-391 5-177 (198)
251 cd01850 CDC_Septin CDC/Septin. 99.5 4.6E-13 1E-17 131.4 13.6 130 225-355 5-159 (276)
252 PRK09601 GTP-binding protein Y 99.5 6.8E-13 1.5E-17 133.4 14.3 88 225-321 3-107 (364)
253 KOG4252|consensus 99.5 6.5E-15 1.4E-19 129.7 -0.4 150 223-388 19-180 (246)
254 COG0532 InfB Translation initi 99.5 8.7E-13 1.9E-17 135.5 14.6 148 224-388 5-169 (509)
255 TIGR00991 3a0901s02IAP34 GTP-b 99.4 2.2E-12 4.7E-17 126.6 16.1 125 222-354 36-168 (313)
256 PTZ00141 elongation factor 1- 99.4 6.1E-13 1.3E-17 139.0 12.6 143 222-379 5-203 (446)
257 cd01885 EF2 EF2 (for archaea a 99.4 6.5E-13 1.4E-17 126.1 11.3 111 226-352 2-138 (222)
258 KOG0070|consensus 99.4 8E-13 1.7E-17 118.2 10.9 149 222-389 15-178 (181)
259 KOG1490|consensus 99.4 6.8E-13 1.5E-17 134.0 11.0 158 224-388 168-340 (620)
260 PRK13351 elongation factor G; 99.4 1E-12 2.2E-17 145.1 12.7 115 225-355 9-141 (687)
261 TIGR00503 prfC peptide chain r 99.4 2E-12 4.3E-17 137.5 14.1 114 224-353 11-146 (527)
262 COG2229 Predicted GTPase [Gene 99.4 4.7E-12 1E-16 113.2 14.0 150 223-388 9-177 (187)
263 KOG1145|consensus 99.4 3.4E-12 7.4E-17 130.2 14.5 151 221-388 150-315 (683)
264 PLN00043 elongation factor 1-a 99.4 2E-12 4.3E-17 135.1 12.8 143 222-379 5-203 (447)
265 KOG0076|consensus 99.4 4E-13 8.6E-18 118.3 5.7 155 222-391 15-189 (197)
266 COG0481 LepA Membrane GTPase L 99.4 2.1E-12 4.5E-17 129.9 10.8 152 226-392 11-189 (603)
267 PTZ00327 eukaryotic translatio 99.4 2.9E-12 6.4E-17 133.6 11.0 151 223-389 33-233 (460)
268 PRK12740 elongation factor G; 99.3 3.1E-12 6.8E-17 140.8 10.9 141 230-386 1-166 (668)
269 PF03308 ArgK: ArgK protein; 99.3 6.6E-12 1.4E-16 119.1 11.1 172 223-420 28-258 (266)
270 COG1217 TypA Predicted membran 99.3 1.6E-11 3.6E-16 123.1 14.2 151 226-392 7-198 (603)
271 COG5256 TEF1 Translation elong 99.3 8.8E-12 1.9E-16 124.3 11.7 144 222-381 5-203 (428)
272 KOG1486|consensus 99.3 1.3E-11 2.8E-16 114.9 11.8 186 193-389 26-288 (364)
273 PF04548 AIG1: AIG1 family; I 99.3 1.6E-11 3.5E-16 116.1 12.4 126 225-355 1-132 (212)
274 COG1703 ArgK Putative periplas 99.3 1.2E-10 2.6E-15 112.0 17.5 212 223-468 50-321 (323)
275 TIGR02836 spore_IV_A stage IV 99.3 1.3E-11 2.9E-16 123.7 11.0 162 223-387 16-235 (492)
276 cd01900 YchF YchF subfamily. 99.3 5.6E-12 1.2E-16 122.9 7.7 86 227-321 1-103 (274)
277 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.5E-11 3.4E-16 117.2 10.6 131 221-375 36-182 (225)
278 COG0012 Predicted GTPase, prob 99.3 1.8E-11 3.9E-16 121.4 10.9 90 224-322 2-109 (372)
279 KOG0096|consensus 99.2 4.4E-11 9.6E-16 106.9 10.2 151 224-391 10-171 (216)
280 PF00350 Dynamin_N: Dynamin fa 99.2 2.8E-11 6E-16 109.6 9.1 112 227-349 1-168 (168)
281 TIGR00490 aEF-2 translation el 99.2 4.3E-11 9.3E-16 132.4 10.1 114 225-354 20-153 (720)
282 PRK13768 GTPase; Provisional 99.2 5.5E-11 1.2E-15 115.4 9.5 109 273-390 98-248 (253)
283 COG0480 FusA Translation elong 99.2 1.9E-10 4.1E-15 124.8 14.3 129 225-371 11-165 (697)
284 KOG0074|consensus 99.2 5.1E-11 1.1E-15 101.4 7.7 148 222-388 15-178 (185)
285 TIGR00993 3a0901s04IAP86 chlor 99.2 1.8E-10 3.8E-15 121.8 13.5 126 223-354 117-251 (763)
286 KOG0071|consensus 99.2 3.5E-10 7.5E-15 96.3 12.3 147 223-388 16-177 (180)
287 PRK07560 elongation factor EF- 99.2 1.5E-10 3.2E-15 128.4 12.7 113 225-353 21-153 (731)
288 PLN00116 translation elongatio 99.1 1.8E-10 3.9E-15 129.3 11.6 112 225-352 20-163 (843)
289 cd04178 Nucleostemin_like Nucl 99.1 1.2E-10 2.7E-15 106.2 8.4 59 221-282 114-172 (172)
290 KOG0461|consensus 99.1 4.9E-10 1.1E-14 108.8 12.1 152 223-390 6-194 (522)
291 PF05049 IIGP: Interferon-indu 99.1 9.7E-10 2.1E-14 110.8 14.8 151 223-389 34-218 (376)
292 COG4917 EutP Ethanolamine util 99.1 2E-10 4.3E-15 96.1 8.1 136 226-387 3-144 (148)
293 COG2895 CysN GTPases - Sulfate 99.1 1.6E-10 3.4E-15 112.8 8.7 143 222-379 4-193 (431)
294 smart00053 DYNc Dynamin, GTPas 99.1 9.4E-10 2E-14 105.3 13.9 131 223-355 25-208 (240)
295 PF09439 SRPRB: Signal recogni 99.1 7.2E-11 1.6E-15 107.7 5.8 113 225-354 4-127 (181)
296 PTZ00416 elongation factor 2; 99.1 2E-10 4.3E-15 128.8 10.2 112 225-352 20-157 (836)
297 cd01858 NGP_1 NGP-1. Autoanti 99.1 2.6E-10 5.6E-15 102.5 8.9 57 223-282 101-157 (157)
298 KOG0072|consensus 99.1 1.7E-10 3.8E-15 98.5 7.2 148 223-389 17-179 (182)
299 PRK14845 translation initiatio 99.1 6E-10 1.3E-14 125.3 13.6 134 235-386 472-670 (1049)
300 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 7.1E-10 1.5E-14 105.5 11.4 152 226-388 1-175 (232)
301 KOG1532|consensus 99.1 2.4E-10 5.3E-15 107.9 7.5 111 272-389 116-264 (366)
302 KOG1673|consensus 99.1 5.8E-10 1.3E-14 96.5 8.8 149 224-389 20-186 (205)
303 KOG0090|consensus 99.1 4.5E-09 9.8E-14 96.1 14.6 148 224-388 38-238 (238)
304 PF03029 ATP_bind_1: Conserved 99.1 2E-10 4.4E-15 110.2 6.3 110 273-389 92-237 (238)
305 PF00735 Septin: Septin; Inte 99.0 1.3E-09 2.9E-14 107.0 10.9 131 225-356 5-159 (281)
306 COG4108 PrfC Peptide chain rel 99.0 2.7E-09 5.8E-14 106.9 11.4 114 226-355 14-149 (528)
307 TIGR00101 ureG urease accessor 99.0 1.7E-09 3.7E-14 101.1 9.3 74 311-388 113-195 (199)
308 KOG0458|consensus 99.0 2.8E-09 6.1E-14 110.3 11.5 142 223-380 176-373 (603)
309 TIGR00073 hypB hydrogenase acc 99.0 3.8E-09 8.2E-14 99.5 10.5 73 311-387 124-205 (207)
310 COG3276 SelB Selenocysteine-sp 99.0 5.2E-09 1.1E-13 105.5 11.9 148 226-389 2-162 (447)
311 KOG0077|consensus 99.0 1.1E-09 2.4E-14 96.0 6.2 147 221-386 17-190 (193)
312 COG5257 GCD11 Translation init 98.9 2.1E-09 4.5E-14 103.8 8.3 153 223-390 9-203 (415)
313 PRK09563 rbgA GTPase YlqF; Rev 98.9 3.1E-09 6.6E-14 105.2 9.8 61 222-285 119-179 (287)
314 cd01849 YlqF_related_GTPase Yl 98.9 3.7E-09 7.9E-14 94.8 8.7 58 222-282 98-155 (155)
315 KOG4423|consensus 98.9 1E-10 2.2E-15 104.3 -1.6 149 225-389 26-194 (229)
316 KOG1487|consensus 98.9 1.3E-08 2.8E-13 95.6 11.6 154 226-388 61-280 (358)
317 KOG1144|consensus 98.9 4.3E-09 9.3E-14 110.8 9.1 150 221-388 473-686 (1064)
318 KOG1954|consensus 98.9 4.6E-09 1E-13 103.0 8.5 121 225-356 59-228 (532)
319 cd01855 YqeH YqeH. YqeH is an 98.9 3.4E-09 7.3E-14 98.3 7.2 57 223-282 126-190 (190)
320 TIGR03596 GTPase_YlqF ribosome 98.9 6.1E-09 1.3E-13 102.5 9.2 60 223-285 117-176 (276)
321 cd01856 YlqF YlqF. Proteins o 98.9 8.3E-09 1.8E-13 94.1 8.9 58 222-282 113-170 (171)
322 COG1161 Predicted GTPases [Gen 98.9 4.8E-09 1E-13 105.2 7.8 61 222-285 130-190 (322)
323 PRK10463 hydrogenase nickel in 98.9 1.5E-08 3.3E-13 98.9 10.9 50 339-388 230-288 (290)
324 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 5.7E-09 1.2E-13 92.1 6.4 55 226-283 85-139 (141)
325 KOG0465|consensus 98.8 2.8E-08 6E-13 103.2 11.3 220 226-465 41-304 (721)
326 COG5019 CDC3 Septin family pro 98.8 5.6E-08 1.2E-12 96.2 12.9 132 224-356 23-179 (373)
327 KOG2486|consensus 98.8 2.1E-08 4.6E-13 95.3 9.3 160 223-388 135-315 (320)
328 KOG1547|consensus 98.8 5.4E-08 1.2E-12 90.5 11.5 134 221-355 41-200 (336)
329 COG0378 HypB Ni2+-binding GTPa 98.8 4.2E-08 9E-13 89.2 9.8 71 313-388 120-200 (202)
330 KOG1491|consensus 98.8 9.9E-09 2.2E-13 100.0 6.2 93 222-323 18-127 (391)
331 COG0050 TufB GTPases - transla 98.8 4.9E-08 1.1E-12 93.3 10.6 154 221-389 9-201 (394)
332 TIGR00092 GTP-binding protein 98.8 1.5E-08 3.2E-13 102.3 7.1 90 225-322 3-109 (368)
333 KOG2655|consensus 98.7 8.4E-08 1.8E-12 95.6 10.8 132 225-356 22-175 (366)
334 cd01859 MJ1464 MJ1464. This f 98.7 1.1E-07 2.3E-12 85.3 8.9 57 223-282 100-156 (156)
335 TIGR03597 GTPase_YqeH ribosome 98.6 8.4E-08 1.8E-12 97.9 8.4 59 224-285 154-217 (360)
336 PRK13796 GTPase YqeH; Provisio 98.6 6.8E-08 1.5E-12 98.7 7.7 59 224-285 160-223 (365)
337 TIGR01425 SRP54_euk signal rec 98.6 5.9E-06 1.3E-10 85.3 21.6 143 225-382 101-283 (429)
338 PRK12289 GTPase RsgA; Reviewed 98.6 4.2E-08 9E-13 99.3 5.4 57 226-285 174-237 (352)
339 PRK12288 GTPase RsgA; Reviewed 98.6 6.1E-08 1.3E-12 98.1 6.3 57 226-285 207-270 (347)
340 KOG0468|consensus 98.6 1.8E-07 3.8E-12 97.9 9.6 113 225-352 129-262 (971)
341 KOG3886|consensus 98.6 1.3E-07 2.7E-12 87.7 7.1 140 225-374 5-164 (295)
342 KOG0448|consensus 98.6 3.5E-07 7.6E-12 96.5 11.2 122 221-356 106-278 (749)
343 cd01851 GBP Guanylate-binding 98.6 1.1E-07 2.4E-12 90.6 6.7 89 226-323 9-104 (224)
344 KOG0464|consensus 98.6 1.3E-07 2.9E-12 93.9 7.4 113 226-356 39-171 (753)
345 PRK10416 signal recognition pa 98.6 4.7E-06 1E-10 83.4 18.3 148 223-382 113-303 (318)
346 smart00010 small_GTPase Small 98.5 6E-08 1.3E-12 82.6 3.3 112 225-378 1-115 (124)
347 TIGR00064 ftsY signal recognit 98.5 1.2E-06 2.7E-11 85.8 11.7 146 224-382 72-261 (272)
348 TIGR00157 ribosome small subun 98.5 1.6E-07 3.4E-12 90.8 5.2 56 226-285 122-184 (245)
349 cd01858 NGP_1 NGP-1. Autoanti 98.5 5.2E-07 1.1E-11 80.9 8.0 84 305-388 3-94 (157)
350 TIGR00157 ribosome small subun 98.5 3.8E-07 8.3E-12 88.1 7.5 83 306-388 32-122 (245)
351 KOG1424|consensus 98.4 1.3E-07 2.9E-12 96.8 4.2 62 221-285 311-372 (562)
352 KOG1707|consensus 98.4 4.9E-06 1.1E-10 86.6 15.5 155 219-392 420-586 (625)
353 PF03193 DUF258: Protein of un 98.4 8.1E-08 1.8E-12 86.0 2.2 58 225-285 36-100 (161)
354 cd01859 MJ1464 MJ1464. This f 98.4 5.1E-07 1.1E-11 80.8 7.3 83 306-389 8-96 (156)
355 cd01855 YqeH YqeH. YqeH is an 98.4 1.5E-06 3.3E-11 80.5 8.5 84 304-389 28-125 (190)
356 COG5258 GTPBP1 GTPase [General 98.3 3.1E-06 6.7E-11 83.9 10.5 150 221-386 114-336 (527)
357 PRK12727 flagellar biosynthesi 98.3 1.4E-05 3.1E-10 83.9 16.1 142 221-377 347-523 (559)
358 KOG0447|consensus 98.3 1.1E-05 2.4E-10 83.0 14.7 160 194-355 277-495 (980)
359 COG1162 Predicted GTPases [Gen 98.3 5.7E-07 1.2E-11 87.8 5.2 57 226-285 166-229 (301)
360 PRK14974 cell division protein 98.3 7.4E-06 1.6E-10 82.4 12.8 145 224-382 140-323 (336)
361 cd01856 YlqF YlqF. Proteins o 98.3 2E-06 4.4E-11 78.3 7.5 86 301-388 10-100 (171)
362 KOG2485|consensus 98.3 1.6E-06 3.4E-11 84.1 6.7 65 221-285 140-209 (335)
363 PRK00098 GTPase RsgA; Reviewed 98.3 1.1E-06 2.5E-11 87.3 5.9 59 224-285 164-229 (298)
364 PRK14721 flhF flagellar biosyn 98.2 1E-05 2.3E-10 83.5 12.4 143 222-377 189-365 (420)
365 KOG2484|consensus 98.2 6.8E-07 1.5E-11 89.1 3.1 73 210-285 238-310 (435)
366 smart00275 G_alpha G protein a 98.2 1.1E-05 2.5E-10 81.6 12.1 109 262-389 174-298 (342)
367 cd03112 CobW_like The function 98.2 9.4E-06 2E-10 73.0 10.3 71 272-351 87-158 (158)
368 PRK14722 flhF flagellar biosyn 98.2 4.2E-05 9.2E-10 77.8 15.4 144 222-378 135-321 (374)
369 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2E-06 4.3E-11 85.1 5.6 58 225-285 162-226 (287)
370 cd01849 YlqF_related_GTPase Yl 98.2 5E-06 1.1E-10 74.4 7.5 76 312-388 1-84 (155)
371 COG1419 FlhF Flagellar GTP-bin 98.2 1.6E-05 3.6E-10 80.5 11.9 122 224-356 203-355 (407)
372 PRK12726 flagellar biosynthesi 98.2 8.9E-05 1.9E-09 75.1 17.0 144 223-379 205-383 (407)
373 PRK12289 GTPase RsgA; Reviewed 98.1 5.2E-06 1.1E-10 84.1 7.2 82 307-388 86-174 (352)
374 KOG0466|consensus 98.1 1.5E-06 3.3E-11 83.5 3.0 102 273-389 126-241 (466)
375 PRK00098 GTPase RsgA; Reviewed 98.1 6.1E-06 1.3E-10 82.1 6.8 83 306-388 76-166 (298)
376 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.8E-06 1.2E-10 81.8 6.5 82 307-388 75-163 (287)
377 PRK11889 flhF flagellar biosyn 98.1 1.2E-05 2.6E-10 81.6 8.6 143 224-379 241-418 (436)
378 KOG0463|consensus 98.1 2.4E-05 5.3E-10 77.3 10.5 146 225-385 134-354 (641)
379 KOG3905|consensus 98.1 6.4E-05 1.4E-09 73.2 13.0 51 339-389 222-290 (473)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 8E-06 1.7E-10 71.9 6.4 73 304-376 5-84 (141)
381 TIGR03596 GTPase_YlqF ribosome 98.1 1.1E-05 2.3E-10 79.5 7.9 86 301-388 12-102 (276)
382 KOG1143|consensus 98.1 1.4E-05 3E-10 79.0 8.4 144 225-385 168-384 (591)
383 KOG0460|consensus 98.0 2.9E-05 6.2E-10 76.1 10.1 153 221-389 51-245 (449)
384 PRK14723 flhF flagellar biosyn 98.0 2.4E-05 5.1E-10 85.9 10.2 141 224-377 185-362 (767)
385 PRK06995 flhF flagellar biosyn 98.0 3.6E-05 7.8E-10 80.8 11.1 146 223-381 255-435 (484)
386 KOG2423|consensus 98.0 2.3E-06 4.9E-11 85.0 1.9 62 221-285 304-365 (572)
387 KOG0467|consensus 98.0 1.5E-05 3.2E-10 85.2 8.0 110 226-351 11-136 (887)
388 cd03114 ArgK-like The function 98.0 2.7E-05 5.9E-10 69.3 7.9 58 271-350 91-148 (148)
389 PRK12723 flagellar biosynthesi 98.0 0.00016 3.5E-09 74.2 14.5 146 224-381 174-356 (388)
390 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.4E-05 5.2E-10 77.4 7.8 86 301-388 15-105 (287)
391 PRK12724 flagellar biosynthesi 97.9 0.00038 8.2E-09 71.6 16.2 138 224-371 223-394 (432)
392 KOG0082|consensus 97.9 0.0001 2.2E-09 73.8 11.7 110 261-389 184-309 (354)
393 PRK12288 GTPase RsgA; Reviewed 97.9 2.7E-05 5.9E-10 78.9 7.7 82 307-388 117-207 (347)
394 TIGR03348 VI_IcmF type VI secr 97.9 0.00015 3.2E-09 84.9 13.7 125 226-355 113-259 (1169)
395 TIGR03597 GTPase_YqeH ribosome 97.8 4.5E-05 9.7E-10 78.0 8.2 81 305-387 58-151 (360)
396 COG5192 BMS1 GTP-binding prote 97.8 4.4E-05 9.6E-10 78.9 7.8 125 222-372 67-209 (1077)
397 PF05783 DLIC: Dynein light in 97.8 0.00018 3.8E-09 75.5 12.3 51 339-389 196-264 (472)
398 PRK00771 signal recognition pa 97.8 0.00021 4.5E-09 74.5 12.7 167 202-382 72-276 (437)
399 PRK13695 putative NTPase; Prov 97.8 0.00014 3E-09 66.4 10.0 88 295-388 81-172 (174)
400 PF00448 SRP54: SRP54-type pro 97.8 6.7E-06 1.4E-10 76.7 1.2 95 271-379 83-181 (196)
401 PRK05703 flhF flagellar biosyn 97.8 9.9E-05 2.1E-09 76.9 9.9 142 224-377 221-396 (424)
402 COG3523 IcmF Type VI protein s 97.8 0.00031 6.8E-09 80.3 14.0 153 195-354 96-271 (1188)
403 KOG3859|consensus 97.7 5.8E-05 1.3E-09 72.0 6.1 131 225-355 43-192 (406)
404 PRK06731 flhF flagellar biosyn 97.6 0.00029 6.2E-09 68.9 10.0 143 223-378 74-251 (270)
405 PRK13796 GTPase YqeH; Provisio 97.6 0.00014 3E-09 74.5 8.0 83 304-388 62-158 (365)
406 KOG0459|consensus 97.6 0.00013 2.8E-09 73.1 7.2 147 221-382 76-279 (501)
407 TIGR00959 ffh signal recogniti 97.6 0.00044 9.4E-09 71.9 11.3 97 271-381 182-282 (428)
408 cd03115 SRP The signal recogni 97.6 0.00058 1.3E-08 62.1 10.9 74 271-356 82-156 (173)
409 COG3640 CooC CO dehydrogenase 97.6 0.00035 7.6E-09 65.6 8.9 62 272-352 134-198 (255)
410 COG1618 Predicted nucleotide k 97.6 0.0019 4E-08 57.4 12.6 157 223-389 4-176 (179)
411 PRK10867 signal recognition pa 97.5 0.00073 1.6E-08 70.4 11.0 97 271-381 183-283 (433)
412 PRK01889 GTPase RsgA; Reviewed 97.4 0.00039 8.5E-09 70.9 7.4 80 307-386 109-194 (356)
413 COG0552 FtsY Signal recognitio 97.3 0.00097 2.1E-08 66.0 9.1 147 223-382 138-328 (340)
414 KOG0469|consensus 97.3 0.00029 6.3E-09 72.2 5.3 111 226-352 21-163 (842)
415 PRK01889 GTPase RsgA; Reviewed 97.2 0.00026 5.6E-09 72.2 4.1 61 222-285 193-260 (356)
416 KOG1533|consensus 97.2 0.00011 2.3E-09 68.8 1.0 123 225-356 3-180 (290)
417 cd00066 G-alpha G protein alph 97.2 0.00086 1.9E-08 67.4 7.3 111 260-389 149-276 (317)
418 KOG1534|consensus 97.1 0.00072 1.6E-08 62.4 5.2 140 273-421 99-251 (273)
419 KOG0705|consensus 97.1 0.0011 2.5E-08 68.8 6.9 145 223-388 29-188 (749)
420 COG0523 Putative GTPases (G3E 97.1 0.0025 5.5E-08 63.8 9.2 146 227-382 4-194 (323)
421 KOG0781|consensus 97.0 0.0047 1E-07 63.5 10.5 152 211-371 365-566 (587)
422 PRK11537 putative GTP-binding 97.0 0.005 1.1E-07 61.8 10.7 122 226-356 6-167 (318)
423 COG0541 Ffh Signal recognition 96.9 0.016 3.4E-07 59.4 13.1 169 199-381 73-282 (451)
424 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0003 6.5E-09 64.5 0.7 118 226-355 2-157 (178)
425 KOG0780|consensus 96.8 0.012 2.5E-07 59.3 10.8 72 270-353 182-254 (483)
426 PF07015 VirC1: VirC1 protein; 96.8 0.005 1.1E-07 58.3 7.9 95 271-382 83-187 (231)
427 PF03266 NTPase_1: NTPase; In 96.7 0.0051 1.1E-07 55.9 7.4 145 226-376 1-162 (168)
428 PF06858 NOG1: Nucleolar GTP-b 96.6 0.006 1.3E-07 44.5 5.4 40 310-350 13-58 (58)
429 cd02038 FleN-like FleN is a me 96.6 0.0088 1.9E-07 52.4 7.6 96 229-352 5-110 (139)
430 PRK04195 replication factor C 96.5 0.056 1.2E-06 57.6 14.7 24 224-247 39-62 (482)
431 TIGR02475 CobW cobalamin biosy 96.5 0.013 2.7E-07 59.5 9.1 21 227-247 7-27 (341)
432 cd02042 ParA ParA and ParB of 96.4 0.013 2.9E-07 48.2 7.5 66 227-323 2-74 (104)
433 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.017 3.7E-07 46.1 8.0 70 227-323 2-71 (99)
434 PRK14737 gmk guanylate kinase; 96.4 0.0024 5.3E-08 59.0 2.9 52 224-277 4-55 (186)
435 cd00009 AAA The AAA+ (ATPases 96.3 0.017 3.7E-07 49.5 8.0 25 224-248 19-43 (151)
436 COG0194 Gmk Guanylate kinase [ 96.3 0.0021 4.6E-08 58.5 2.1 53 223-278 3-55 (191)
437 PF05621 TniB: Bacterial TniB 96.3 0.021 4.6E-07 56.2 8.9 169 202-390 43-232 (302)
438 TIGR03263 guanyl_kin guanylate 96.2 0.004 8.7E-08 56.8 3.5 54 226-281 3-56 (180)
439 cd00071 GMPK Guanosine monopho 96.2 0.0039 8.5E-08 54.6 3.1 53 227-281 2-55 (137)
440 COG1162 Predicted GTPases [Gen 96.2 0.017 3.7E-07 56.8 7.7 82 307-388 76-166 (301)
441 PRK14738 gmk guanylate kinase; 96.2 0.0034 7.3E-08 59.0 2.7 39 223-261 12-50 (206)
442 cd02036 MinD Bacterial cell di 96.1 0.016 3.5E-07 52.4 7.0 107 229-353 5-128 (179)
443 COG1116 TauB ABC-type nitrate/ 96.1 0.0035 7.6E-08 59.7 2.5 27 223-249 28-54 (248)
444 cd03111 CpaE_like This protein 96.1 0.023 4.9E-07 47.3 7.2 89 230-348 6-106 (106)
445 cd04178 Nucleostemin_like Nucl 96.1 0.012 2.7E-07 53.6 6.0 45 312-356 1-47 (172)
446 PRK00411 cdc6 cell division co 96.1 0.23 5.1E-06 51.2 16.3 24 224-247 55-78 (394)
447 PF09547 Spore_IV_A: Stage IV 96.1 0.059 1.3E-06 55.2 11.1 162 222-388 15-233 (492)
448 PRK00300 gmk guanylate kinase; 96.1 0.0048 1E-07 57.6 3.2 27 222-248 3-29 (205)
449 KOG3887|consensus 96.0 0.019 4.2E-07 54.2 7.0 115 225-356 28-152 (347)
450 PF13207 AAA_17: AAA domain; P 95.9 0.0057 1.2E-07 51.8 2.9 22 226-247 1-22 (121)
451 KOG2749|consensus 95.9 0.028 6E-07 56.0 7.9 26 221-246 100-125 (415)
452 PF00005 ABC_tran: ABC transpo 95.9 0.0062 1.3E-07 52.8 3.2 28 222-249 9-36 (137)
453 COG3840 ThiQ ABC-type thiamine 95.9 0.0053 1.1E-07 55.8 2.5 27 223-249 24-50 (231)
454 KOG1424|consensus 95.7 0.013 2.8E-07 61.0 4.9 72 302-373 166-244 (562)
455 COG0466 Lon ATP-dependent Lon 95.7 0.068 1.5E-06 58.0 10.4 45 201-246 328-372 (782)
456 PF00503 G-alpha: G-protein al 95.7 0.018 3.8E-07 59.6 5.9 110 258-389 221-353 (389)
457 PF13555 AAA_29: P-loop contai 95.7 0.0083 1.8E-07 44.8 2.4 20 226-245 25-44 (62)
458 COG1136 SalX ABC-type antimicr 95.6 0.0072 1.6E-07 57.2 2.5 27 223-249 30-56 (226)
459 PF01571 GCV_T: Aminomethyltra 95.6 0.075 1.6E-06 49.7 9.5 79 18-103 5-85 (211)
460 KOG0446|consensus 95.5 0.017 3.6E-07 63.4 5.0 105 273-379 133-246 (657)
461 cd03264 ABC_drug_resistance_li 95.4 0.0096 2.1E-07 55.9 2.6 26 222-248 24-49 (211)
462 PF13521 AAA_28: AAA domain; P 95.4 0.0086 1.9E-07 53.8 2.1 23 226-248 1-23 (163)
463 cd01130 VirB11-like_ATPase Typ 95.4 0.012 2.6E-07 54.2 3.0 28 221-248 22-49 (186)
464 cd03238 ABC_UvrA The excision 95.4 0.012 2.6E-07 53.9 2.9 26 221-246 18-43 (176)
465 PRK07261 topology modulation p 95.3 0.012 2.7E-07 53.5 2.8 23 225-247 1-23 (171)
466 COG0563 Adk Adenylate kinase a 95.2 0.013 2.8E-07 53.8 2.7 23 225-247 1-23 (178)
467 cd03222 ABC_RNaseL_inhibitor T 95.2 0.013 2.9E-07 53.6 2.7 28 222-249 23-50 (177)
468 COG1341 Predicted GTPase or GT 95.2 0.048 1E-06 55.5 6.9 26 221-246 70-95 (398)
469 PF13671 AAA_33: AAA domain; P 95.2 0.014 3E-07 50.8 2.7 21 227-247 2-22 (143)
470 PRK07003 DNA polymerase III su 95.2 0.081 1.8E-06 58.4 9.0 21 227-247 41-61 (830)
471 KOG4181|consensus 95.2 0.035 7.5E-07 55.1 5.5 23 226-248 190-212 (491)
472 PLN03046 D-glycerate 3-kinase; 95.1 0.11 2.4E-06 53.7 9.2 114 123-246 116-234 (460)
473 PRK14086 dnaA chromosomal repl 95.1 0.077 1.7E-06 57.5 8.5 21 227-247 317-337 (617)
474 cd02019 NK Nucleoside/nucleoti 95.1 0.016 3.5E-07 44.2 2.5 21 227-247 2-22 (69)
475 KOG2743|consensus 95.1 0.046 9.9E-07 53.3 6.0 76 272-356 146-228 (391)
476 TIGR03574 selen_PSTK L-seryl-t 95.1 0.22 4.8E-06 48.1 11.0 20 227-246 2-21 (249)
477 TIGR00960 3a0501s02 Type II (G 95.1 0.016 3.5E-07 54.6 3.0 27 222-248 27-53 (216)
478 cd03225 ABC_cobalt_CbiO_domain 95.1 0.016 3.5E-07 54.3 2.9 27 222-248 25-51 (211)
479 PRK09270 nucleoside triphospha 95.0 0.035 7.5E-07 53.0 5.2 26 223-248 32-57 (229)
480 cd03261 ABC_Org_Solvent_Resist 95.0 0.017 3.6E-07 55.2 2.9 27 222-248 24-50 (235)
481 PRK10078 ribose 1,5-bisphospho 95.0 0.017 3.7E-07 53.2 2.9 24 225-248 3-26 (186)
482 smart00382 AAA ATPases associa 95.0 0.019 4.2E-07 48.6 3.0 25 225-249 3-27 (148)
483 PRK08118 topology modulation p 95.0 0.016 3.5E-07 52.5 2.6 22 226-247 3-24 (167)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.017 3.8E-07 54.4 3.0 27 222-248 28-54 (218)
485 COG3839 MalK ABC-type sugar tr 95.0 0.015 3.3E-07 58.4 2.5 26 223-248 28-53 (338)
486 cd03226 ABC_cobalt_CbiO_domain 95.0 0.018 3.9E-07 53.8 2.9 27 222-248 24-50 (205)
487 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.02 4.2E-07 50.5 2.9 27 222-248 24-50 (144)
488 PF13191 AAA_16: AAA ATPase do 94.9 0.025 5.4E-07 51.3 3.7 25 223-247 23-47 (185)
489 cd02032 Bchl_like This family 94.9 0.13 2.9E-06 50.0 9.1 21 225-245 1-21 (267)
490 cd03216 ABC_Carb_Monos_I This 94.9 0.02 4.2E-07 51.6 2.9 29 221-249 23-51 (163)
491 TIGR01166 cbiO cobalt transpor 94.9 0.019 4.2E-07 52.9 3.0 27 222-248 16-42 (190)
492 cd03265 ABC_DrrA DrrA is the A 94.9 0.019 4.1E-07 54.3 3.0 27 222-248 24-50 (220)
493 KOG0054|consensus 94.9 0.035 7.6E-07 65.0 5.6 28 222-249 545-572 (1381)
494 TIGR02673 FtsE cell division A 94.9 0.019 4.2E-07 53.9 3.0 27 222-248 26-52 (214)
495 COG0404 GcvT Glycine cleavage 94.9 0.06 1.3E-06 55.2 6.7 78 17-103 53-130 (379)
496 TIGR00235 udk uridine kinase. 94.9 0.015 3.2E-07 54.6 2.1 25 223-247 5-29 (207)
497 COG1120 FepC ABC-type cobalami 94.9 0.017 3.7E-07 55.8 2.5 25 223-247 27-51 (258)
498 KOG2423|consensus 94.9 0.077 1.7E-06 53.6 7.1 85 304-388 207-299 (572)
499 COG1161 Predicted GTPases [Gen 94.9 0.06 1.3E-06 54.2 6.5 74 304-381 28-109 (322)
500 COG0410 LivF ABC-type branched 94.8 0.03 6.5E-07 52.8 4.0 27 223-249 28-54 (237)
No 1
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.6e-120 Score=907.56 Aligned_cols=449 Identities=43% Similarity=0.660 Sum_probs=419.5
Q ss_pred CCCcEEEecCCCCCceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceE
Q psy9409 4 KNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVI 83 (472)
Q Consensus 4 ~~~ti~a~~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~ 83 (472)
+.|||||+|||||+|||||||+|||+|+.|++++|+. ...++||+++|++|+|.+|+.|||+|++||+|||||||||++
T Consensus 3 ~~dTI~AiaTa~g~~aI~IvRiSGp~a~~ia~~i~~~-~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvv 81 (454)
T COG0486 3 MFDTIAAIATAPGEGAIGIVRISGPDALEIAQKLFGG-LKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVV 81 (454)
T ss_pred CCCcEEEEccCCCCceEEEEEecCHhHHHHHHHHhCC-CCCCCCcEEEEEEEEcCCCcEeeeeeEEEEeCCCCcccccEE
Confidence 5689999999999999999999999999999999985 245899999999999988999999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhcChhhHHH
Q psy9409 84 ELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLI 163 (472)
Q Consensus 84 E~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~g~l~~~~ 163 (472)
|||||||+++++++|+.|++. |+|+|+|||||+|||+||||||+||||+.|||+|+|+.+++.|++|++|.+++.+
T Consensus 82 Ei~~HGg~~v~~~iL~~~l~~----GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls~~i 157 (454)
T COG0486 82 EIQCHGGPVVVNLILELLLKL----GARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQLQGALSQLI 157 (454)
T ss_pred EEEcCCCHHHHHHHHHHHHHc----CCeecCCCcchHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHh
Q psy9409 164 NILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243 (472)
Q Consensus 164 ~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~ 243 (472)
..||++++++++++|+.||||||+++ ......+.+.++.+.+++.+++...++++.+++|++|+|+|+||||||||+|+
T Consensus 158 ~~lr~~li~~~a~vEa~IDfpeedi~-~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNa 236 (454)
T COG0486 158 NELREALLELLAQVEANIDFPEEDIE-ELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNA 236 (454)
T ss_pred HHHHHHHHHHHHHheEeCCCCccccc-chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHH
Confidence 99999999999999999999999888 77888999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 244 L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
|++++.++|+++||||||+++..+.++|+++.++||+|++++ .+.+|++|+++++..+++||++|||+|++.+
T Consensus 237 L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet-------~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 237 LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET-------DDVVERIGIERAKKAIEEADLVLFVLDASQP 309 (454)
T ss_pred HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC-------ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999996
Q ss_pred CCchHHHHHHHhCCCCCCEEEEEecCCCCcCcccc--cccCCCceEEEEeccCccHHHHHHHHHHHhhcc-CCCCCCccc
Q psy9409 324 KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNI--NYKNNIANIYLSASKRIGINLLRNTLLDLIEKT-QTIESSPYL 400 (472)
Q Consensus 324 ~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~-~~~~~~~~~ 400 (472)
. ......++..+..++|+++|+||+|+....... .-..+.+++.+||++|.|++.|.+.|.+.+... ...+ ..++
T Consensus 310 ~-~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~~~~~~-~~~i 387 (454)
T COG0486 310 L-DKEDLALIELLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKGLGNQE-GLFL 387 (454)
T ss_pred C-chhhHHHHHhcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhcccccc-ccee
Confidence 2 233344444456789999999999998876522 123345799999999999999999999999765 4444 6899
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCCCC
Q psy9409 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472 (472)
Q Consensus 401 ~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCiGK 472 (472)
++.||.++|+++.++|+.++..+..+ .+.|++++||+.|+++||+|||+.++||+||.|||+|||||
T Consensus 388 ~~~Rh~~~L~~a~~~l~~a~~~~~~~-----~~~dl~a~dLr~A~~~LgeItG~~~~edlLd~IFs~FCiGK 454 (454)
T COG0486 388 SNLRHIQLLEQAAEHLEDALQQLELG-----QPLDLLAEDLRLAQEALGEITGEFVSEDLLDEIFSNFCIGK 454 (454)
T ss_pred ecHHHHHHHHHHHHHHHHHHhhhhcc-----CChhhhHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCC
Confidence 99999999999999999999988765 57899999999999999999999999999999999999999
No 2
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=7.2e-108 Score=851.61 Aligned_cols=446 Identities=45% Similarity=0.686 Sum_probs=407.4
Q ss_pred CCCCcEEEecCCCCCceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCce
Q psy9409 3 TKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDV 82 (472)
Q Consensus 3 ~~~~ti~a~~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~ 82 (472)
.+.|||||+|||+|+|||||||||||+|+++++++|++. .++||+++|++++|+ +++|||+|++|||+||||||||+
T Consensus 2 ~~~dTI~A~aT~~g~~~i~viRiSG~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~S~TGEd~ 78 (449)
T PRK05291 2 MMNDTIAAIATPPGRGGIGIIRISGPDALEIAQKLFGKK--LPKPRTAHYGHIRDP-GEVIDEVLVLYFPAPNSFTGEDV 78 (449)
T ss_pred CCCCcEEEeccCCcCceEEEEEEEhHHHHHHHHHHhCCC--CCCCcEEEEEEEecC-CcccceEEEEEecCCCCccCCcE
Confidence 356999999999999999999999999999999999642 378999999999995 78999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhcChhhHH
Q psy9409 83 IELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKL 162 (472)
Q Consensus 83 ~E~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~g~l~~~ 162 (472)
+|||||||++|++++|+.|++. |+|+|+|||||+|||+||||||+||||+.+||+|+|+.++++|++|++|.+++.
T Consensus 79 vEi~~HG~~~v~~~il~~l~~~----g~r~A~pGEFt~RAflngk~dL~qaEai~~li~a~t~~~~~~al~~l~G~l~~~ 154 (449)
T PRK05291 79 VEIQCHGGPAVLNLILELLLAL----GARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGALSKL 154 (449)
T ss_pred EEEECCCCHHHHHHHHHHHHHc----CCEEccCccchHHHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHH
Q psy9409 163 INILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFN 242 (472)
Q Consensus 163 ~~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin 242 (472)
+..||++|.++++.+|+.||||||+.+ +.+.+.+..+++.++.+++++.+..+.++..+++++|+++|+||||||||+|
T Consensus 155 ~~~~r~~l~~~~a~iea~iDf~ee~~~-~~~~~~i~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln 233 (449)
T PRK05291 155 INELREELLELLALVEAAIDFPEEDIE-FLSDEKILEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLN 233 (449)
T ss_pred HHHHHHHHHHHHHHheEEccCCCCCcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHH
Confidence 999999999999999999999998776 6788899999999999999999999988889999999999999999999999
Q ss_pred hhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 243 SLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 243 ~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
+|++.+.+++++.+++|+|.....+.+++.++.+|||||++++ .+.++..++.++...+..+|++++|+|+++
T Consensus 234 ~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~-------~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 234 ALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET-------DDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred HHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC-------ccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 9999998888999999999999999999999999999999877 788888888889999999999999999998
Q ss_pred CCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHHHHHHHHHHHhhccC--CCCCCccc
Q psy9409 323 DKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQ--TIESSPYL 400 (472)
Q Consensus 323 ~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~--~~~~~~~~ 400 (472)
+.+..... ++.. ..+.|+++|+||+|+.+..... ...+.+++++||++|.|+++|++.|.+.+.... ..+ ..++
T Consensus 307 ~~s~~~~~-~l~~-~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~~~~~~~~-~~~~ 382 (449)
T PRK05291 307 PLTEEDDE-ILEE-LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFGGFGGNQE-GVFL 382 (449)
T ss_pred CCChhHHH-HHHh-cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhhccccccc-ccee
Confidence 75544332 2222 3578999999999997644321 334567999999999999999999999885322 223 5688
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCCCC
Q psy9409 401 ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472 (472)
Q Consensus 401 ~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCiGK 472 (472)
++.||++++++|+++|..++..+..+ .+.|++++||+.|+++|++|||++++|||||+||++|||||
T Consensus 383 ~~~R~~~~l~~a~~~l~~~~~~~~~~-----~~~~~~a~~l~~a~~~l~~i~G~~~~e~iLd~iF~~FCiGK 449 (449)
T PRK05291 383 TNARHLEALERALEHLERALEGLESG-----LPLELLAEDLRLALEALGEITGEVTSEDLLDRIFSSFCIGK 449 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCC
Confidence 89999999999999999999988666 67899999999999999999999999999999999999999
No 3
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=100.00 E-value=6.2e-104 Score=817.48 Aligned_cols=435 Identities=35% Similarity=0.530 Sum_probs=389.7
Q ss_pred cCCCCCceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcH
Q psy9409 12 ATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGP 91 (472)
Q Consensus 12 ~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~ 91 (472)
|||+|+|||||||||||+|++|++++|++. ..++||+++|++++|+++++|||+|++||++||||||||+||||||||+
T Consensus 1 aT~~g~~~i~viRiSG~~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~ 79 (442)
T TIGR00450 1 ATPPFNSAIHIIRLSGPDSLSILKKITNKL-NTASGMRIQYGHIIDSNNKCKDDELLFKFVAPNSYTGEDVIEIQCHGSM 79 (442)
T ss_pred CCCCCCceEEEEEeehHHHHHHHHHHhCCC-CCCCCcEEEEEEEECCCCCEeeeEEEEEEcCCCCcccccEEEEECCCCH
Confidence 799999999999999999999999999642 1257899999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhcChhhHHHHHHHHHHH
Q psy9409 92 IILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLI 171 (472)
Q Consensus 92 ~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~g~l~~~~~~~~~~l~ 171 (472)
+|++++|+.|++. |+|+|+|||||+|||+||||||+|||||.|||+|+|+.+++.|++|++|.+++++..||++|+
T Consensus 80 ~v~~~il~~l~~~----g~R~A~pGEFT~RAflNGk~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~ 155 (442)
T TIGR00450 80 LIVQEILQLCLKS----GARLAQPGEFTQRAFLNGKMDLTQAEAINELILAPNNKVKDIALNKLAGELDQKIEAIRKSLL 155 (442)
T ss_pred HHHHHHHHHHHHc----CCeEcCCchhhHHHHhcCCccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcce
Q psy9409 172 NLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251 (472)
Q Consensus 172 ~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~ 251 (472)
++++++|+.||||||+.+ . ..+.++++.+..++++++... .++..+++++|+++|+||||||||+|+|++.+.++
T Consensus 156 ~~~a~iea~iDf~ee~~~-~---~~~~~~l~~~~~~l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~ai 230 (442)
T TIGR00450 156 QLLAQVEVNIDYEEDDDE-Q---DSLNQLLLSIIAELKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAI 230 (442)
T ss_pred HHHHHeeEECCcCCCCcc-H---HHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 999999999999998744 2 488889999999999999998 56888999999999999999999999999999888
Q ss_pred ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHH
Q psy9409 252 VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKK 331 (472)
Q Consensus 252 v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~ 331 (472)
++++||||+|.....+.++|.++.+|||||+++. .+.++..++.++..+++.+|++++|+|++++.+.+..
T Consensus 231 vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~-------~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-- 301 (442)
T TIGR00450 231 VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH-------ADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-- 301 (442)
T ss_pred cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc-------hhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--
Confidence 9999999999999999999999999999999987 7888888888888999999999999999987554422
Q ss_pred HHHhCC-CCCCEEEEEecCCCCcCcc-cccccCCCceEEEEeccCccHHHHHHHHHHHhhcc--C--C-CCCCcccccHH
Q psy9409 332 IIKNFP-MNIPVIYVWNKIDYSGHQK-NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKT--Q--T-IESSPYLARER 404 (472)
Q Consensus 332 il~~l~-~~~piivV~NK~Dl~~~~~-~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~--~--~-~~~~~~~~~~r 404 (472)
++..+. .+.|+++|+||+|+..... .+.+..+.+++.+||++ .|++++++.|.+.+... . . .+ ..++++.|
T Consensus 302 ~l~~~~~~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~~~~~~~~~-~~~~~~~r 379 (442)
T TIGR00450 302 LIIDLNKSKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFYSKERVELD-DYLISSWQ 379 (442)
T ss_pred HHHHHhhCCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHhcccccccc-cceEhHHH
Confidence 333332 5789999999999965421 22334556889999998 58888888888876321 1 1 23 46788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCCCC
Q psy9409 405 HIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472 (472)
Q Consensus 405 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCiGK 472 (472)
|+++|++|.++|..+++.+..+ .+.|+++++|+.|+++|++|||++++|||||+|||+|||||
T Consensus 380 ~~~~l~~a~~~l~~~~~~~~~~-----~~~el~a~~l~~a~~~l~~itG~~~~ediLd~iFs~FCiGK 442 (442)
T TIGR00450 380 AMILLEKAIAQLQQFLSKLDRQ-----LFLDMLVFHLREAINCLGQVTGEVVTEDVLDEIFSNFCLGK 442 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCCCC
Confidence 9999999999999999988766 67899999999999999999999999999999999999999
No 4
>KOG1191|consensus
Probab=100.00 E-value=9.7e-80 Score=612.82 Aligned_cols=451 Identities=31% Similarity=0.481 Sum_probs=383.1
Q ss_pred cEEEecCCCC-CceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcC---------CCceeceEEEEEeCCCCC
Q psy9409 7 PIIGIATPPG-RGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCK---------NNNIIDKGLVIYFKAPHS 76 (472)
Q Consensus 7 ti~a~~t~~g-~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~d~~l~~~~~~p~s 76 (472)
||+|++||.| ++||+|+|+|||++..++++++.+. ..|+++.+.+..||++ +|-.+|+++.+||++|.|
T Consensus 43 Ti~alst~~~~~~aiai~R~sG~~a~kv~r~L~~s~-~v~~~~~~~~~~l~~~~~r~~~~~e~~v~~D~~l~l~~~gp~s 121 (531)
T KOG1191|consen 43 TIFALSTGIGLTSAIAIFRISGPDATKVARRLLRSV-MVPKRRNAGLRALYNPEVRVYVVDEDGVTRDRALGLYFLGPQS 121 (531)
T ss_pred eEEEeecCCCCCcceeEEEecCchHHHHHHHhcccc-ccCCCCccccccccChhhcccccCCCCcchhhhhhccccCCce
Confidence 9999999999 9999999999999999999999763 2367777777777766 345999999999999999
Q ss_pred ccCCceEEEeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhc
Q psy9409 77 YTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLS 156 (472)
Q Consensus 77 ~tged~~E~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~ 156 (472)
|||||++|+|||||.+++..++.++.... .-|+|.|+|||||+|||+|||+||+|+|++.++|.++|+.|+..|+.+++
T Consensus 122 FtgeD~~el~~hgs~avv~~~l~a~~~sg-~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~ 200 (531)
T KOG1191|consen 122 FTGEDVVELQTHGSSAVVVGVLTALGASG-IPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVA 200 (531)
T ss_pred eeeeeeEEEEEecCccchhhHHHHhhhcc-CCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhc
Confidence 99999999999999999999999998321 23899999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHhcCCCCC-ccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCC
Q psy9409 157 GKFSKLINILLDKLINLRTLIEFSFDFPEE-NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235 (472)
Q Consensus 157 g~l~~~~~~~~~~l~~~~a~~e~~id~~ee-~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nv 235 (472)
|......-.|+..++..++++|+.+||.++ +++ ......+......++.++...+...+..+.++.|++|+|+|+|||
T Consensus 201 g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~-~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNv 279 (531)
T KOG1191|consen 201 GEALALCFGWRKILIEALAGLEARIDFEEERPLE-EIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNV 279 (531)
T ss_pred chhHHhhhhHHHHHHHHHhccceeechhhcCchh-hccchhhhhHHHHHHHHHHHHHHhhhhHHHhhcCCeEEEEcCCCC
Confidence 999888888999999999999999999885 333 333344455566678889999999999999999999999999999
Q ss_pred chhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCc-cccccccchhHHHHHhHHhhhcccccccEE
Q psy9409 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD-INSKIKKNINEVEKIGIERTWVELKNSDII 314 (472)
Q Consensus 236 GKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~-~~~~~~~~~~~~e~~~i~~~~~~~~~aD~i 314 (472)
|||||+|+|..+++++|++.||||||.++..++++|+++.|+||+|+++ . .+.+|.+|+.++...+..+|++
T Consensus 280 GKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~-------~~~iE~~gI~rA~k~~~~advi 352 (531)
T KOG1191|consen 280 GKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES-------NDGIEALGIERARKRIERADVI 352 (531)
T ss_pred CHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc-------CChhHHHhHHHHHHHHhhcCEE
Confidence 9999999999999999999999999999999999999999999999998 5 8999999999999999999999
Q ss_pred EEEEeCCCC--CCchHHHHHHHhCC----------CCCCEEEEEecCCCCcCccccc-------ccC---CCc-eEEEEe
Q psy9409 315 IYVQDARYD--KHTDFDKKIIKNFP----------MNIPVIYVWNKIDYSGHQKNIN-------YKN---NIA-NIYLSA 371 (472)
Q Consensus 315 l~v~D~s~~--~~~~~~~~il~~l~----------~~~piivV~NK~Dl~~~~~~~~-------~~~---~~~-~i~vSA 371 (472)
++|+|+... .+.....+++.... ...|++++.||+|+..+-..+. ... ..+ ..++|+
T Consensus 353 ~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~ 432 (531)
T KOG1191|consen 353 LLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSC 432 (531)
T ss_pred EEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeee
Confidence 999999432 22223334444331 3478999999999987733111 111 234 455999
Q ss_pred ccCccHHHHHHHHHHHhhcc-CCCC-CCcccccHHHHHHHHHHHH-HHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDLIEKT-QTIE-SSPYLARERHIHSLNEANY-YLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKL 448 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~~~-~~~~-~~~~~~~~r~~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l 448 (472)
++++|++.|.+.+.+.+... ..+. ......+.|+.+.++.+.. .+.......... .|.++..++||.|.+.+
T Consensus 433 ~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~-----~D~~la~~~lR~a~~~i 507 (531)
T KOG1191|consen 433 TTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLK-----EDIDLAGEPLRLAQRSI 507 (531)
T ss_pred chhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHHHHHhhhcc-----cchhhccchHHHHHhhh
Confidence 99999999999999988432 2111 1346667888888888776 555555543333 68999999999999999
Q ss_pred hchhCCCCchhHHHHHhhcCCCCC
Q psy9409 449 SSIIGKSTTNDLLDNIFSQFCIGK 472 (472)
Q Consensus 449 ~~i~g~~~~e~iLd~iF~~FCiGK 472 (472)
+++||..++|++|+.||++|||||
T Consensus 508 ~r~tggggte~vls~ifqkfcigK 531 (531)
T KOG1191|consen 508 ARITGGGGTEEVLSSIFQKFCIGK 531 (531)
T ss_pred cccCCCCchhhHHHHHHHHhhcCC
Confidence 999999999999999999999999
No 5
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=100.00 E-value=1.1e-49 Score=331.03 Aligned_cols=114 Identities=50% Similarity=0.868 Sum_probs=103.9
Q ss_pred cEEEecCCCCCceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEe
Q psy9409 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELH 86 (472)
Q Consensus 7 ti~a~~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~ 86 (472)
||+|+|||+|+|||||||||||+|+++++++|.+. ++||+++|++++|.++++|||+|++||++||||||||++|||
T Consensus 1 TI~AlaT~~g~~aiaiIRiSG~~a~~i~~~~~~~~---~~~r~~~~~~~~~~~~~~iDe~lv~~f~~P~SyTGEd~vEi~ 77 (114)
T PF10396_consen 1 TIAALATPPGRSAIAIIRISGPDALEIAQKLFGKS---PKPRRAYYGTIYDEDGEPIDEVLVLYFPAPRSYTGEDVVEIH 77 (114)
T ss_dssp -EEEE-S-SSC-SEEEEEEESTTHHHHHHTTESSS---TTTTEEEEEEEECSSTCEEEEEEEEEEBTTCSSSSSEEEEEE
T ss_pred CEEEECCCCCCceEEEEEeEcHHHHHHHHHHhCcc---ccCcEEEEEEEEcCCCccccceeEEeecCCCcccCCCEEEEE
Confidence 89999999999999999999999999999999543 789999999999988999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCC
Q psy9409 87 GHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNK 127 (472)
Q Consensus 87 ~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk 127 (472)
||||++++++||+.|++. |+|+|+|||||+|||+|||
T Consensus 78 ~HGg~~v~~~il~~l~~~----G~R~A~pGEFT~RAflNGK 114 (114)
T PF10396_consen 78 CHGGPAVVRRILEALLKA----GARLAEPGEFTRRAFLNGK 114 (114)
T ss_dssp EESSHHHHHHHHHHHHHT----T-EE--TTHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHc----CceEcCCchhhHHHHhcCC
Confidence 999999999999999999 9999999999999999998
No 6
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.97 E-value=1.1e-29 Score=256.47 Aligned_cols=232 Identities=24% Similarity=0.305 Sum_probs=182.9
Q ss_pred cCc-HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHhhHhcCC--CCCccccccChHHHHHHHHHHHHHHHHHHHhhhhH
Q psy9409 142 AST-ESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF--PEENQELILNKNDFFNELIKIKKKLLKIIQQGKKR 218 (472)
Q Consensus 142 a~~-~~~~~~a~~~l~g~l~~~~~~~~~~l~~~~a~~e~~id~--~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~ 218 (472)
|+| +..++.|++||+|.+++.+..|+. + +.+++.++| |+|+.. +.+...++.++..++++++++.+....+
T Consensus 107 a~t~e~klqv~la~l~~~l~r~~~~~~~-l----~~~~~~i~~~g~gE~~~-~~~~~~i~~ri~~l~~~L~~~~~~~~~~ 180 (351)
T TIGR03156 107 ARTHEGKLQVELAQLKYLLPRLVGGWTH-L----SRQGGGIGTRGPGETQL-ETDRRLIRERIAQLKKELEKVEKQRERQ 180 (351)
T ss_pred ccChHHHHHHHHHhccchhhhhhhhHHH-H----HhhcCCCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 457889999999999999988877 5 455566665 465432 3667889999999999999999998877
Q ss_pred Hhhh---CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchh
Q psy9409 219 ALIR---NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNIN 294 (472)
Q Consensus 219 ~~~~---~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~ 294 (472)
+..+ ..++|+++|.||||||||+|+|++.+ ..+++.+++|+|+....+.+ ++.++.||||||+... .|.+
T Consensus 181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-----l~~~ 254 (351)
T TIGR03156 181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-----LPHE 254 (351)
T ss_pred HhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc-----CCHH
Confidence 7666 55899999999999999999999988 45789999999999999988 6789999999998432 1355
Q ss_pred HHHHHhHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCC-CCCCEEEEEecCCCCcCccccc-ccCCCceEEE
Q psy9409 295 EVEKIGIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFP-MNIPVIYVWNKIDYSGHQKNIN-YKNNIANIYL 369 (472)
Q Consensus 295 ~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~-~~~piivV~NK~Dl~~~~~~~~-~~~~~~~i~v 369 (472)
.++. +..+...+..||++|+|+|++++.... .|..+++.+. .+.|+++|+||+|+.+...... .....+++++
T Consensus 255 lie~--f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~i 332 (351)
T TIGR03156 255 LVAA--FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFV 332 (351)
T ss_pred HHHH--HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEE
Confidence 5565 566777889999999999999875543 3445666654 4789999999999975432111 1112468999
Q ss_pred EeccCccHHHHHHHHHHH
Q psy9409 370 SASKRIGINLLRNTLLDL 387 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~ 387 (472)
||++|.|+++|++.|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=225.92 Aligned_cols=271 Identities=24% Similarity=0.329 Sum_probs=191.4
Q ss_pred eEcCCCCcchhhhh---cCCCChhHHHHHHHHHhcCcHHHHHHHH------HHhcC--hhhHHHHHHHHHHHHHHHHhhH
Q psy9409 111 RLAMPGEFTKRAFL---NNKLDLIQVEAIIDLINASTESAAKSAM------ISLSG--KFSKLINILLDKLINLRTLIEF 179 (472)
Q Consensus 111 r~a~~geft~Raf~---ngk~dl~qae~~~~li~a~~~~~~~~a~------~~l~g--~l~~~~~~~~~~l~~~~a~~e~ 179 (472)
|....+|+.-+-|. .|.+|....+.+...+.++++.++..|- +.-.| ...+.+.++..+...-.-.+-.
T Consensus 41 r~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvN 120 (444)
T COG1160 41 RIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVN 120 (444)
T ss_pred CccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 56677888877787 8999988888999999999998888772 22222 2223333333332111222233
Q ss_pred hcCCCCC--------------ccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhh--hCCCEEEEEecCCCchhHHHHh
Q psy9409 180 SFDFPEE--------------NQELILNKNDFFNELIKIKKKLLKIIQQGKKRALI--RNGLNVVLIGQPNVGKSSLFNS 243 (472)
Q Consensus 180 ~id~~ee--------------~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~--~~~~~V~ivG~~nvGKSSLin~ 243 (472)
.+|-.+. .++ .+ ..-..-+..|.+.+.+.+......... .++++|+|+|.||||||||+|+
T Consensus 121 K~D~~~~e~~~~efyslG~g~~~~--IS-A~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ 197 (444)
T COG1160 121 KIDNLKAEELAYEFYSLGFGEPVP--IS-AEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINA 197 (444)
T ss_pred cccCchhhhhHHHHHhcCCCCceE--ee-hhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHH
Confidence 3333211 111 11 111123445555555554211111111 2569999999999999999999
Q ss_pred hhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 244 LVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 244 L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
|+++++.+|++.+|||+|.+...+++++.++.++||+|++.- ..-.+.+|.+.+.++...+..+|++++|+|++.+
T Consensus 198 ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk----~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~ 273 (444)
T COG1160 198 ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRK----GKITESVEKYSVARTLKAIERADVVLLVIDATEG 273 (444)
T ss_pred hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcc----cccccceEEEeehhhHhHHhhcCEEEEEEECCCC
Confidence 999999999999999999999999999999999999999975 2225556777788899999999999999999998
Q ss_pred CCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------------cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 324 KHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------------NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 324 ~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
. .++...+...+ ..+.++++|+||+|+.+.+. .+......|++++||++|.|+.++++.+.+...
T Consensus 274 ~-~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 274 I-SEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred c-hHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 3 44455555443 37899999999999987632 122234578999999999999999999998874
No 8
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=4.2e-24 Score=220.74 Aligned_cols=230 Identities=22% Similarity=0.269 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHhhHhcC--CCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhC
Q psy9409 146 SAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFD--FPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRN 223 (472)
Q Consensus 146 ~~~~~a~~~l~g~l~~~~~~~~~~l~~~~a~~e~~id--~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~ 223 (472)
..++..+.+|+..+.+....|. .+.+. ...+. .|.|.-- +.+...+..++..+.++|+++.+....++..+.
T Consensus 120 ~klqvelA~l~y~~prl~~~~~-~l~~~----~gg~g~~g~ge~~~-e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~ 193 (426)
T PRK11058 120 GKLQVELAQLRHLATRLVRGWT-HLERQ----KGGIGLRGPGETQL-ETDRRLLRNRIVQILSRLERVEKQREQGRRARI 193 (426)
T ss_pred HHHHHHHHhhhhhhhhhhcccc-chhhh----cCCCCCCCCChhHh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 3455556777776665544432 33333 33333 3444222 367788999999999999999988776664454
Q ss_pred C---CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 224 G---LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 224 ~---~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
+ ++|+++|.||||||||+|+|++.++. +++.+++|+|.....+.+.+. ++.+|||||+... .|.+.++.
T Consensus 194 ~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-----lp~~lve~- 266 (426)
T PRK11058 194 KADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-----LPHDLVAA- 266 (426)
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-----CCHHHHHH-
Confidence 3 69999999999999999999998876 689999999999888888765 8999999998542 23566665
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-ccc-ccCCCc-eEEEEec
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-NIN-YKNNIA-NIYLSAS 372 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~-~~~piivV~NK~Dl~~~~~-~~~-~~~~~~-~i~vSA~ 372 (472)
+..+...+..+|++|+|+|++++.+.. .|..+++.+. .+.|+++|+||+|+.+... ... ...+.+ ++++||+
T Consensus 267 -f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAk 345 (426)
T PRK11058 267 -FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQ 345 (426)
T ss_pred -HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCC
Confidence 556777889999999999999975444 2455666654 4789999999999975321 111 112344 5889999
Q ss_pred cCccHHHHHHHHHHHhh
Q psy9409 373 KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~ 389 (472)
+|.|+++|++.|.+.+.
T Consensus 346 tG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 346 TGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999999884
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.4e-25 Score=199.67 Aligned_cols=150 Identities=29% Similarity=0.449 Sum_probs=112.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
++|+++|.||||||||+|+|+|... .++++||+|++.....+.+++.++.++||||+.+.. +...-|. +.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~-----~~s~ee~--v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLS-----SKSEEER--VARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSS-----SSSHHHH--HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCC-----CCCcHHH--HHHH
Confidence 5899999999999999999999995 579999999999999999999999999999998761 1122222 3233
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
.....+.|++++|+|+++.+ ..+.-..+....++|+++|+||+|+..... .+.+..++|++++||++|.|++
T Consensus 73 ~l~~~~~D~ii~VvDa~~l~--r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 73 YLLSEKPDLIIVVVDATNLE--RNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp HHHHTSSSEEEEEEEGGGHH--HHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred HHhhcCCCEEEEECCCCCHH--HHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 33357899999999999742 212111222246899999999999987654 3556779999999999999999
Q ss_pred HHHHHH
Q psy9409 379 LLRNTL 384 (472)
Q Consensus 379 ~L~~~l 384 (472)
+|++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=4.6e-24 Score=203.95 Aligned_cols=157 Identities=29% Similarity=0.384 Sum_probs=133.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
-|+|+|+||||||||+|+|+|.+.++||+.|.|||..+...+..+..+++|+||||+... ...+.....+.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-------k~~l~~~m~~~a~ 80 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-------KHALGELMNKAAR 80 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc-------chHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999999999999999987 7777777788899
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCC-CCCEEEEEecCCCCcCccc---c----cc-cCCCceEEEEeccCcc
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPM-NIPVIYVWNKIDYSGHQKN---I----NY-KNNIANIYLSASKRIG 376 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~-~~piivV~NK~Dl~~~~~~---~----~~-~~~~~~i~vSA~~g~g 376 (472)
..+..+|+++||+|++.. .......+++.+.. +.|+++++||+|...+... + .. .....++++||++|.|
T Consensus 81 ~sl~dvDlilfvvd~~~~-~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 81 SALKDVDLILFVVDADEG-WGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred HHhccCcEEEEEEecccc-CCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 999999999999999985 22344555555543 5799999999998877651 1 11 1223699999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy9409 377 INLLRNTLLDLIEK 390 (472)
Q Consensus 377 i~~L~~~l~~~~~~ 390 (472)
++.|.+.+...++.
T Consensus 160 ~~~L~~~i~~~Lpe 173 (298)
T COG1159 160 VDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999954
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.9e-23 Score=204.79 Aligned_cols=156 Identities=23% Similarity=0.333 Sum_probs=121.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|+||||||||+|+|++.+.+++++.|+||++........++.++.||||||+... ...........+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-------~~~l~~~~~~~~~ 74 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-------KHSLNRLMMKEAR 74 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-------cchHHHHHHHHHH
Confidence 699999999999999999999999999999999999877777677788999999998765 3333333344566
Q ss_pred cccccccEEEEEEeCCCCCCch-HHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCC-CceEEEEeccCccH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNN-IANIYLSASKRIGI 377 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~-~~~i~vSA~~g~gi 377 (472)
..+..+|++++|+|+++..... .+...++. .+.|+++|+||+|+..... .+....+ .+++++||++|.|+
T Consensus 75 ~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 75 SAIGGVDLILFVVDSDQWNGDGEFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred HHHhhCCEEEEEEECCCCCchHHHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 7789999999999999864442 22233322 4789999999999975432 1112222 37999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy9409 378 NLLRNTLLDLIEK 390 (472)
Q Consensus 378 ~~L~~~l~~~~~~ 390 (472)
++|++.|.+.++.
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998854
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=6.8e-24 Score=213.33 Aligned_cols=158 Identities=33% Similarity=0.448 Sum_probs=132.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
..|+|+|.||||||||+|+|+++..++|++.||+|||.......|.+.++.++||+|+... ..+.+.....+++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~------~~~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG------DEDELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcC------CchHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999965 0366777767888
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCccccccc---CCCceEEEEeccCccHHHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQKNINYK---NNIANIYLSASKRIGINLL 380 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~~~~~~---~~~~~i~vSA~~g~gi~~L 380 (472)
...+..||++|||+|+..+ .......+.+.+. .++|+++|+||+|-........+. .-.+++++||..|.|+.+|
T Consensus 78 ~~Ai~eADvilfvVD~~~G-it~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 78 LIAIEEADVILFVVDGREG-ITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred HHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 9999999999999999986 3344444444443 569999999999987554433222 2246899999999999999
Q ss_pred HHHHHHHhh
Q psy9409 381 RNTLLDLIE 389 (472)
Q Consensus 381 ~~~l~~~~~ 389 (472)
++.+.+.++
T Consensus 157 ld~v~~~l~ 165 (444)
T COG1160 157 LDAVLELLP 165 (444)
T ss_pred HHHHHhhcC
Confidence 999999973
No 13
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=1.1e-22 Score=190.95 Aligned_cols=188 Identities=27% Similarity=0.353 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhHHhhh--CC-CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe
Q psy9409 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIR--NG-LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI 269 (472)
Q Consensus 193 ~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~--~~-~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~ 269 (472)
+...++.+++.++++++.+.+..+..+..+ ++ ++|+++|++|||||||+|+|++.... +.+.+++|.+.....+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~ 85 (204)
T cd01878 7 DRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRL 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEe
Confidence 345678899999999999998887766554 44 79999999999999999999998753 356677787777777777
Q ss_pred CCe-eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCC-CCCCEEE
Q psy9409 270 NKF-LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFP-MNIPVIY 344 (472)
Q Consensus 270 ~~~-~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~-~~~piiv 344 (472)
.+. ++.+|||||+.+. .+....+. .......+..+|++++|+|++++.+.. .|..+++.+. .+.|+++
T Consensus 86 ~~~~~~~i~Dt~G~~~~-----~~~~~~~~--~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vii 158 (204)
T cd01878 86 PDGREVLLTDTVGFIRD-----LPHQLVEA--FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMIL 158 (204)
T ss_pred cCCceEEEeCCCccccC-----CCHHHHHH--HHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEE
Confidence 665 8999999998653 11222222 233344567899999999999875543 3445555554 4689999
Q ss_pred EEecCCCCcCccc--ccccCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 345 VWNKIDYSGHQKN--INYKNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 345 V~NK~Dl~~~~~~--~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
|+||+|+...... .......+++++||++|.|+++++++|.+.+
T Consensus 159 V~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 159 VLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 9999999765431 1223456799999999999999999997753
No 14
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.6e-22 Score=180.19 Aligned_cols=156 Identities=40% Similarity=0.612 Sum_probs=127.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
|++|+++|++|+|||||+|++.+...+.+++.+++|.+.....+.+++.++.+|||||+.+. ....+.....+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~~~~~ 73 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET-------EDEIEKIGIER 73 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC-------cchHHHHHHHH
Confidence 57999999999999999999999988777889999999888888888999999999999876 44444444556
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHHHHHHH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNT 383 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~L~~~ 383 (472)
....+..+|++++|+|++++.+...+. +... ....|+++|+||+|+.............+++++||+++.|+++++++
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 151 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLE-ILEL-PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEA 151 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHH-HHHh-hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHH
Confidence 667788999999999999875544333 2222 36799999999999987654433344678999999999999999999
Q ss_pred HHHHh
Q psy9409 384 LLDLI 388 (472)
Q Consensus 384 l~~~~ 388 (472)
|.+.+
T Consensus 152 l~~~~ 156 (157)
T cd04164 152 LLELA 156 (157)
T ss_pred HHHhh
Confidence 98764
No 15
>COG2262 HflX GTPases [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=194.50 Aligned_cols=228 Identities=26% Similarity=0.367 Sum_probs=172.6
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHhhHhcCC--CCC-ccccccChHHHHHHHHHHHHHHHHHHHhhhhHHh--h
Q psy9409 147 AAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF--PEE-NQELILNKNDFFNELIKIKKKLLKIIQQGKKRAL--I 221 (472)
Q Consensus 147 ~~~~a~~~l~g~l~~~~~~~~~~l~~~~a~~e~~id~--~ee-~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~--~ 221 (472)
.++.-+.||+..+.+....|.. +. .....+.| |.| .++ .+...++.++..++++++++.+.....+. .
T Consensus 116 kLQVeLAqL~Y~lpRl~~~~~~-l~----~~GggiG~rGpGE~~lE--~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~ 188 (411)
T COG2262 116 KLQVELAQLRYELPRLVGSGSH-LS----RLGGGIGFRGPGETQLE--TDRRRIRRRIAKLKRELENVEKAREPRRKKRS 188 (411)
T ss_pred hhhhhHHhhhhhhhHhHhhhhh-cc----cccCCCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444456666555444333321 11 22333444 334 333 67889999999999999999887654433 3
Q ss_pred hCC-CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNG-LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~-~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
+++ +.|+++|.+|+|||||+|+|++.... +.+..++|.|+....+.+. |.++.+.||.|+... .|+..++.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-----LP~~LV~A- 261 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-----LPHPLVEA- 261 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCccc-----CChHHHHH-
Confidence 234 58999999999999999999988775 5788899999999999987 689999999999876 77888888
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCC-CCCCEEEEEecCCCCcCccc---ccccCCCceEEEEec
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFP-MNIPVIYVWNKIDYSGHQKN---INYKNNIANIYLSAS 372 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~-~~~piivV~NK~Dl~~~~~~---~~~~~~~~~i~vSA~ 372 (472)
+..++.....+|++++|+|++++.... ....++..++ ...|+|+|+||+|+...... +.... .+.+++||+
T Consensus 262 -FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~~~v~iSA~ 339 (411)
T COG2262 262 -FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-PNPVFISAK 339 (411)
T ss_pred -HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-CCeEEEEec
Confidence 888999999999999999999985433 4456667664 66899999999998766541 11122 258999999
Q ss_pred cCccHHHHHHHHHHHhhc
Q psy9409 373 KRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~~ 390 (472)
+|.|++.|++.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998853
No 16
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.89 E-value=4.3e-22 Score=186.22 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=114.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++++.++.. ...|+++.+.....+.+++ +.+.+|||||...+ ..........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-------~~~~~~e~~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRY-------PGTAGQEWMD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccC-------CccchhHHHH
Confidence 489999999999999999999988754 3455555555555666777 56789999998754 1111111112
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHH----HHHhC---CCCCCEEEEEecCCCCcCcc-------cc-cccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNF---PMNIPVIYVWNKIDYSGHQK-------NI-NYKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l---~~~~piivV~NK~Dl~~~~~-------~~-~~~~~~~~i 367 (472)
.....++.+|++|+|+|++++.+++.... +.+.. ..+.|+++|+||+|+..... .+ .+..+++++
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 23446789999999999999876663333 33322 25689999999999965432 12 224578999
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|++++|+.+.+.+..
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999987743
No 17
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=7.6e-22 Score=199.11 Aligned_cols=159 Identities=27% Similarity=0.414 Sum_probs=121.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|.||||||||+|+|++..++++++.++||++.....+.+++.++.||||||+.+. ...+.....+.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~-------~~~l~~~~~r~ 124 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP-------KGSLEKAMVRC 124 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC-------cccHHHHHHHH
Confidence 36899999999999999999999999888999999999888888899999999999998654 33333333445
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc-c----ccccC-CCceEEEEeccCcc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-N----INYKN-NIANIYLSASKRIG 376 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~-~----~~~~~-~~~~i~vSA~~g~g 376 (472)
+...+..+|++|+|+|.++. .......+++.+. .+.|.++|+||+|+..... . +.... ..+++++||++|.|
T Consensus 125 ~~~~l~~aDvil~VvD~~~s-~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKS-FDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred HHHHhhhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 56678899999999998764 1222223333322 3568889999999865421 1 11111 25699999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy9409 377 INLLRNTLLDLIEK 390 (472)
Q Consensus 377 i~~L~~~l~~~~~~ 390 (472)
+++++++|.+.+..
T Consensus 204 v~eL~~~L~~~l~~ 217 (339)
T PRK15494 204 IDGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998853
No 18
>KOG0092|consensus
Probab=99.88 E-value=2.7e-22 Score=179.02 Aligned_cols=151 Identities=23% Similarity=0.233 Sum_probs=124.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|..|||||||+-++....+.. ...|.+..-+....+.+++ .++.+|||+|+..+ .
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy---------------~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY---------------H 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccc---------------c
Confidence 4799999999999999999999998864 3466666777777787776 67889999999987 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.-+..++++|+++|+|||+++.+++...+.+++.+ .++.-+.+|+||+||..... .+++..+..++++|
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETS 148 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETS 148 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEe
Confidence 33667999999999999999998887555555554 34455778999999988543 35566788999999
Q ss_pred eccCccHHHHHHHHHHHhhc
Q psy9409 371 ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~~ 390 (472)
||||.|++++|..|.+.+..
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred cccccCHHHHHHHHHHhccC
Confidence 99999999999999999854
No 19
>KOG0084|consensus
Probab=99.87 E-value=7.7e-22 Score=176.78 Aligned_cols=150 Identities=22% Similarity=0.234 Sum_probs=127.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
-+||+++|.+|||||+|+.++.+..+.. +...+...|+....+.++|. ++.+|||+|+..+ .
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF---------------r 72 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF---------------R 72 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEEeeecceEEEEEeeeccccHHH---------------h
Confidence 4799999999999999999999998864 56667788999999999885 6899999999887 3
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCc-eEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIA-NIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~-~i~v 369 (472)
..+..++++|+++|+|||+++..++.....+++++ ..++|.++|+||+|+.+... .++...+.| ++++
T Consensus 73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084|consen 73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence 45778999999999999999998887555555544 46789999999999987764 345567778 9999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
|||++.|+++.|..|...+.
T Consensus 153 SAK~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLTLAKELK 172 (205)
T ss_pred ccCCccCHHHHHHHHHHHHH
Confidence 99999999999999998884
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.5e-21 Score=205.82 Aligned_cols=162 Identities=24% Similarity=0.355 Sum_probs=124.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|+||||||||+|+|++.++..+++.+|||+|.....+.+++.++.||||||++... ......+.....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~----~~~~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRV----KQASGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccc----cccchHHHHHHH
Confidence 4589999999999999999999999987889999999999998999999999999999986530 011112332223
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------c----ccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------N----INYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~----~~~~~~~~~i~vSA 371 (472)
++..+++.+|++++|+|++++.+.... .++..+ ..+.|+++|+||+|+..... . +.....+|++++||
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 345567899999999999987554422 233332 36789999999999975321 1 12223468999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++++.+.+.+.
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 21
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.87 E-value=1e-21 Score=176.65 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=109.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++....+. ..+++|+.+.....+.+++. .+.+|||||...+ ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~------- 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF-------TAM------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------chH-------
Confidence 68999999999999999999988764 44455555666666777764 5678999998876 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHH----HHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|++++.+++.... +.+.. ..+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 66 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd04136 66 -RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETS 144 (163)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEec
Confidence 2336788999999999998766553332 22222 25789999999999965432 23334467899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998754
No 22
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=5.8e-21 Score=189.36 Aligned_cols=157 Identities=28% Similarity=0.434 Sum_probs=122.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
.|+++|+||||||||+|+|++.+.+++++.|.||++........++.++.++||||+... ...........+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~-------~~~l~~~~~~~~~ 79 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP-------KRALNRAMNKAAW 79 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc-------hhHHHHHHHHHHH
Confidence 499999999999999999999999999999999999887777767789999999999876 4333333344556
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------ccccc-CCCceEEEEeccCcc
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYK-NNIANIYLSASKRIG 376 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~-~~~~~i~vSA~~g~g 376 (472)
..+..+|++++|+|+++.. ......+++.+. .+.|+++|+||+|+..... .+.+. ...+++++||++|.|
T Consensus 80 ~~~~~~D~il~vvd~~~~~-~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKI-GPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HHHhcCCEEEEEEeCCCCC-ChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 6788999999999999842 222334444443 4689999999999984322 12222 235799999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy9409 377 INLLRNTLLDLIEK 390 (472)
Q Consensus 377 i~~L~~~l~~~~~~ 390 (472)
+++|++.|.+.+..
T Consensus 159 v~~L~~~L~~~l~~ 172 (292)
T PRK00089 159 VDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998853
No 23
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=3.3e-21 Score=173.21 Aligned_cols=147 Identities=20% Similarity=0.202 Sum_probs=114.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|++.++.. +..++++.+.....+.+++. .+.+|||||...+ ..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~-------- 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RS-------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HH--------
Confidence 489999999999999999999998864 67888888888888888774 5899999997665 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.....++.+|++++|+|.+++.++.....++.. ...+.|+++|+||+|+..... ...+..+.+++++||
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSA 144 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeC
Confidence 233467889999999999987665533333332 224689999999999954332 123344688999999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|+++++++|.+.
T Consensus 145 ~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 145 KAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 24
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=4.1e-21 Score=179.97 Aligned_cols=149 Identities=23% Similarity=0.274 Sum_probs=113.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+.|+++|..|||||||++++....+.. ...++.+.+.....+.+++ ..+.+|||+|...+ ..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~-------~~-------- 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NS-------- 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh-------HH--------
Confidence 368999999999999999999888742 3344555677667777877 57899999998776 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC-CCCCCEEEEEecCCCCcCcc-------ccccc-CCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYK-NNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~-~~~~~i~vS 370 (472)
....+++++|++|+|||++++.+++. |...++.. ..+.|+++|+||+|+..... .+++. .+.+++++|
T Consensus 65 l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etS 144 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEAS 144 (202)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEec
Confidence 23457889999999999999877663 33333333 35789999999999965332 12222 367899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++|++|.+.+.
T Consensus 145 Aktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 145 AKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998773
No 25
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=4.4e-21 Score=200.32 Aligned_cols=162 Identities=31% Similarity=0.460 Sum_probs=128.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|.+|+|||||+|+|++.+...+++.+|||++.....+.+++..+.+|||||+.... .-.+.++.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~----~~~~~~e~~~~~ 246 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKG----KVTEGVEKYSVL 246 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccc----cchhhHHHHHHH
Confidence 4579999999999999999999999988889999999999988998999999999999998751 113345555556
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------c----ccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------N----INYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~----~~~~~~~~~i~vS 370 (472)
++...++.+|++|+|+|++++.+.. ...++..+ ..+.|+++|+||+|+..... . +.....++++++|
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~-~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQ-DLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHH-HHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 6777889999999999999874433 23333333 35789999999999973221 1 1122357899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.+.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 26
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.86 E-value=4.4e-21 Score=173.64 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=113.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+..+.. ...++.+.+.....+.+++. .+.+|||||...+ ...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~------- 67 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTI------- 67 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHH-------
Confidence 689999999999999999999887753 45566666666666666664 6899999997765 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh---CC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---FP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
...+++.+|++++|+|++++.++.....++.. .. .+.|+++|+||+|+..... .+.+..+++++++||
T Consensus 68 -~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 68 -TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred -HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 23467889999999999987666543333333 22 5689999999999865432 233455789999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.|.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998876
No 27
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=5.3e-21 Score=173.20 Aligned_cols=149 Identities=21% Similarity=0.197 Sum_probs=109.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+..+.. ...|..+.+.....+..++ ..+.+|||||...+ ..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~~-------- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------RT-------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HH--------
Confidence 689999999999999999999988742 2334444344334444444 57899999997765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|.+++.+++....+++.+ ....|+++|+||+|+.+... .+.+..+.+++++||
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA 145 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence 1334678999999999999876655333333332 25689999999999976432 233445678999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++++.|.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=4.3e-21 Score=174.11 Aligned_cols=149 Identities=23% Similarity=0.221 Sum_probs=111.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+..+.. ...|+.+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~-------- 67 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF-------RT-------- 67 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-------HH--------
Confidence 799999999999999999999887643 3445555555555566666 46899999997765 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++++|++++|+|++++.++.....++.. ...+.|+++|+||+|+.+... .+.+..+.+++++||
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 123467899999999999987665533333332 235789999999999975432 223345678999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++++.+.+.+.
T Consensus 148 ~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 148 KANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998763
No 29
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=4.6e-21 Score=177.86 Aligned_cols=150 Identities=20% Similarity=0.177 Sum_probs=114.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|..|||||||++++....+.. ...+..+.+.....+.+++ ..+.+|||||...+ ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~-------~~l------ 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTES-PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF-------CTI------ 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHH------
Confidence 4799999999999999999999876632 2234455666666677776 56889999998776 221
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
...+++.+|++|+|||++++.+++....++..+ .++.|+++|+||+|+..... .+++..+++++++||
T Consensus 72 --~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SA 149 (189)
T cd04121 72 --FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSP 149 (189)
T ss_pred --HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecC
Confidence 234678999999999999987766333333322 36789999999999975332 244456789999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++|+.|.+.+.
T Consensus 150 k~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 150 LCNFNITESFTELARIVL 167 (189)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998774
No 30
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=4.6e-21 Score=172.63 Aligned_cols=147 Identities=25% Similarity=0.289 Sum_probs=110.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||++++++..+ ++..++++.+.......+++. .+.+|||||..++ ...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~------- 66 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF-------SAM------- 66 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-------hHH-------
Confidence 7999999999999999999998765 355666666655556667664 5788999998776 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|+++..++... ..+.+.. ..+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 67 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04145 67 -REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEee
Confidence 22366789999999999987655432 3333322 25789999999999975432 12233467899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|++++++.|.+.+
T Consensus 146 a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 146 AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998764
No 31
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.86 E-value=3.6e-21 Score=173.86 Aligned_cols=147 Identities=23% Similarity=0.298 Sum_probs=110.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||+++++...+. ..+++|+.+.....+.+++. .+.+|||||...+ ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~------- 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-------TAM------- 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCcccc-------hhH-------
Confidence 68999999999999999999976553 44556666665666777654 5679999998776 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|.++..+++ ++..+.+.. ..+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 66 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (164)
T cd04175 66 -RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETS 144 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEee
Confidence 233678899999999998875554 333343322 25789999999999975432 23344568899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 145 AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 32
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=3.9e-21 Score=173.36 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=110.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+..+. ...++|+.+.......+++ ..+.+|||||...+ ...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~------- 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF-------SAM------- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------hHH-------
Confidence 48999999999999999999988764 3444555565555666665 46789999998876 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|++++.+++.. ..+.+... .+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 65 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 65 -RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEee
Confidence 22356789999999999987655422 22333222 4689999999999976432 23344568899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 144 a~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 144 AKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988753
No 33
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.86 E-value=4.9e-21 Score=171.64 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=109.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||...+ ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~l------- 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAM------- 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HHH-------
Confidence 68999999999999999999988764 34455555555556666664 4778999998766 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA 371 (472)
...+++.+|++++|+|.++..++. ++..+.+... .+.|+++|+||+|+..... .+.+..+.+++++||
T Consensus 66 -~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (162)
T cd04138 66 -RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSA 144 (162)
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecC
Confidence 223677899999999999865444 2333333322 5789999999999976432 233345678999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.|.+.+
T Consensus 145 ~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 145 KTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 34
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.4e-21 Score=198.98 Aligned_cols=163 Identities=30% Similarity=0.446 Sum_probs=128.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|++|+|||||+|+|++.+...+++.+|+|++.....+..++..+.+|||||+... ....+.++....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~----~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK----GKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCC----cchhhHHHHHHH
Confidence 3568999999999999999999999998889999999999998888889999999999998764 111334555445
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc----------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK----------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~----------~~~~~~~~~~i~vS 370 (472)
.++..+++.+|++|+|+|++++.+.. ...+...+ ..++|+++|+||+|+.+... .+......|++++|
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~-~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQ-DLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 56677889999999999999874433 23333333 25789999999999974432 11223357899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.+.+.+.
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988763
No 35
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.86 E-value=4.9e-21 Score=181.43 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=113.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC---eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK---FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||+|+|.+..+.. ...|..+.|.....+.+++ ..+.+|||||...+ ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l------ 66 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKM------ 66 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHH------
Confidence 589999999999999999999987742 4456666777777777753 57899999997655 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC-C---CCCCEEEEEecCCCCcCcc-------cccccCCCceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF-P---MNIPVIYVWNKIDYSGHQK-------NINYKNNIANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l-~---~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i 367 (472)
...+++.+|++|+|+|++++.+++. |...+... . ...|+++|+||+|+..... .+.+..+.+++
T Consensus 67 --~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 67 --LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred --HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 2335789999999999999866653 33333322 1 3457999999999975432 23444567899
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|++++++.|.+.+..
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.86 E-value=5.4e-21 Score=172.76 Aligned_cols=148 Identities=25% Similarity=0.235 Sum_probs=111.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+.++.. ...|.++.+.....+..++. .+.+|||||...+ ...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~------- 68 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY-------RAI------- 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HHH-------
Confidence 689999999999999999999988753 44566666666677777764 6889999997765 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
...+++.+|++++|+|++++.++.....++.. ...+.|+++|+||+|+..... .+....+.+++++||
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (165)
T cd01868 69 -TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSA 147 (165)
T ss_pred -HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 23466789999999999987655533333332 234689999999999975432 223345678999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.+.+.+
T Consensus 148 ~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 148 LDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 37
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=2.2e-21 Score=175.96 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=111.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+|+++|++|||||||+|+|.+... .++..+++|++.....+.+++. .+.+|||||+.+. ....+.. ....
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~-~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEG-------ASEGKGL-GHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCc-------ccccCCc-hHHH
Confidence 589999999999999999998765 4678888888877777777776 9999999998643 1110000 1123
Q ss_pred hcccccccEEEEEEeCCCC-CCchHHHHH---HHhCC---CCCCEEEEEecCCCCcCcc------ccccc-CCCceEEEE
Q psy9409 305 WVELKNSDIIIYVQDARYD-KHTDFDKKI---IKNFP---MNIPVIYVWNKIDYSGHQK------NINYK-NNIANIYLS 370 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~-~~~~~~~~i---l~~l~---~~~piivV~NK~Dl~~~~~------~~~~~-~~~~~i~vS 370 (472)
...+..+|++++|+|++++ .+.+....+ +.... ...|+++|+||+|+.+... .+... ...+++++|
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 152 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPIS 152 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEe
Confidence 3345679999999999987 444432222 22221 3689999999999976543 11122 356899999
Q ss_pred eccCccHHHHHHHHHHH
Q psy9409 371 ASKRIGINLLRNTLLDL 387 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~ 387 (472)
|++|.|+++++++|.+.
T Consensus 153 a~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 153 ALTGEGLDELLRKLAEL 169 (170)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999999865
No 38
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=7e-21 Score=181.11 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=128.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCcee-eeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT-RDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt-~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||++++.+..+.. ..++.+. .+.....+.+++ ..+.+|||||.... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~---------------~ 64 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW---------------T 64 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-cCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH---------------H
Confidence 589999999999999999998766531 2222222 245555555544 57899999997622 1
Q ss_pred Hhhhcccc-cccEEEEEEeCCCCCCchHHHHHHHh---C--CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 302 ERTWVELK-NSDIIIYVQDARYDKHTDFDKKIIKN---F--PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 302 ~~~~~~~~-~aD~il~v~D~s~~~~~~~~~~il~~---l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...++. .+|++++|||++++.++.....++.. . ..+.|+++|+||+|+..... .++...++++++
T Consensus 65 --~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e 142 (221)
T cd04148 65 --EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIE 142 (221)
T ss_pred --HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEE
Confidence 111334 89999999999998665533333322 2 15789999999999965432 223345678999
Q ss_pred EEeccCccHHHHHHHHHHHhhc---cCCCCCC--cccccHHHHHHHHHHHHHHHHHHH
Q psy9409 369 LSASKRIGINLLRNTLLDLIEK---TQTIESS--PYLARERHIHSLNEANYYLSCAIK 421 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~~---~~~~~~~--~~~~~~r~~~~l~~~~~~l~~~~~ 421 (472)
+||++|.|++++++.+.+.+.. .....+. ....+.||...+.+|...|..+..
T Consensus 143 ~SA~~~~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~ 200 (221)
T cd04148 143 TSAGLQHNVDELLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVA 200 (221)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhc
Confidence 9999999999999999998842 1112213 578889999999999999998876
No 39
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=6.8e-21 Score=172.59 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=109.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCce-eeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT-TRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gt-t~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||++++.+..+. ...+.| ..+.....+.+++ ..+.+|||||...+ ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------- 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF-------RA------- 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HH-------
Confidence 69999999999999999999988764 333433 3444444556665 46799999997765 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHh---C-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---F-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++|+|+|++++.+++....++.. . ..+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 67 -~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd04122 67 -VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECS 145 (166)
T ss_pred -HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence 133467899999999999998766544344332 2 35689999999999976542 23334567899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|+++++..+.+.+
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999988765
No 40
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=6.3e-21 Score=174.33 Aligned_cols=150 Identities=22% Similarity=0.249 Sum_probs=112.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||++++.+..+. ..+..|..+.....+.+++ ..+.+|||||...+ ..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------- 65 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-------TA------- 65 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhh-------HH-------
Confidence 379999999999999999999988774 2333344444445566666 46889999998765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC--CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF--PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....++..+|++++|+|++++.++.. |...+... ..+.|+++|+||+|+..... .+.+..+++++++
T Consensus 66 -l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 66 -MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred -HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEE
Confidence 23346788999999999999877663 33334332 25789999999999865432 2334457899999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|++++|++|.+.+..
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987743
No 41
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=5.8e-21 Score=172.91 Aligned_cols=157 Identities=23% Similarity=0.300 Sum_probs=110.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+++|++|||||||+|+|.+..+. +++.+++|.+.......+++.++.+|||||+.+... .....++...+. .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~-~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL---EERNTIEMQAIT-A 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc---cCCchHHHHHHH-H
Confidence 37999999999999999999998764 466788888887777777889999999999854300 001111111111 1
Q ss_pred hcccccccEEEEEEeCCCCCCc--hHHHHHHHhCC---CCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccC
Q psy9409 305 WVELKNSDIIIYVQDARYDKHT--DFDKKIIKNFP---MNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKR 374 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~--~~~~~il~~l~---~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g 374 (472)
. ...+|++|+|+|+++.... +.+..+++.+. .+.|+++|+||+|+..... .+......+++++||++|
T Consensus 76 ~--~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 76 L--AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTE 153 (168)
T ss_pred H--HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEeccc
Confidence 1 1236899999999976432 22223333332 4789999999999976443 122334578999999999
Q ss_pred ccHHHHHHHHHHHh
Q psy9409 375 IGINLLRNTLLDLI 388 (472)
Q Consensus 375 ~gi~~L~~~l~~~~ 388 (472)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 42
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.86 E-value=7.5e-21 Score=171.48 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=109.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|++..+.. ...|..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LE-------- 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HH--------
Confidence 589999999999999999999988643 4455555555555566554 56889999997665 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-----CCCCEEEEEecCCCCcCcc-------cccccCCCce
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-----MNIPVIYVWNKIDYSGHQK-------NINYKNNIAN 366 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-----~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~ 366 (472)
....+++.+|++|+|+|++++.++. +...+.+... ...|+++|+||+|+..... .+....+.++
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKY 144 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeE
Confidence 2334678899999999999875544 2333333332 4689999999999973221 2333456789
Q ss_pred EEEEeccCccHHHHHHHHHHHh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+++||++|.|++++++.|.+.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 43
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=5.9e-21 Score=178.88 Aligned_cols=149 Identities=23% Similarity=0.170 Sum_probs=110.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-C--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-K--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||+++|++..+.. ...|+...+.....+.++ + ..+.+|||||...+ ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-------~~------- 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-------GG------- 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-------hh-------
Confidence 589999999999999999999887642 344555556655666665 3 56899999998765 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHH----HhC----CCCCCEEEEEecCCCCcCcc-------cccccCC-Cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKII----KNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNN-IA 365 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il----~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~-~~ 365 (472)
....+++++|++++|+|++++.+++....++ ..+ ....|+++|+||+|+.+... .+.+..+ .+
T Consensus 66 -~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (201)
T cd04107 66 -MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIG 144 (201)
T ss_pred -hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCce
Confidence 2344778999999999999986665332222 211 25689999999999974221 2333445 57
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|+++++++|.+.+.
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998873
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.86 E-value=7e-21 Score=171.22 Aligned_cols=147 Identities=19% Similarity=0.180 Sum_probs=109.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC----CeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN----KFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~----~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
+||+++|++|+|||||++++.+..+.. ...++.+.+.....+.+. ...+.+|||||...+ ...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~----- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAI----- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHh-----
Confidence 489999999999999999999887642 334555566655555555 457899999997655 221
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHH---HhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKII---KNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il---~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|++++.++.....++ .....+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 68 ---~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 144 (162)
T cd04106 68 ---TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTS 144 (162)
T ss_pred ---HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 234678999999999999876655333333 22235799999999999975432 23445678999999
Q ss_pred eccCccHHHHHHHHHHH
Q psy9409 371 ASKRIGINLLRNTLLDL 387 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~ 387 (472)
|++|.|+++++++|.+.
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 145 VKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=7.8e-21 Score=176.61 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=110.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+.++......++++.+.....+.+++ ..+.||||||...+ ..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~-------- 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RS-------- 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HH--------
Confidence 58999999999999999999988774323344444555454556665 47889999997655 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHH----HHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++|+|+|++++.+++... .+.+......|+++|+||+|+..... .+.+..+.+++++||
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa 145 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSA 145 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeC
Confidence 1234678899999999999876554222 22222235789999999999964321 233445678999999
Q ss_pred ccCccHHHHHHHHHHHhhc
Q psy9409 372 SKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~~ 390 (472)
++|.|+++++++|.+.+..
T Consensus 146 ~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 146 KTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998843
No 46
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.2e-20 Score=170.54 Aligned_cols=159 Identities=30% Similarity=0.436 Sum_probs=119.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|.+|+|||||+|+|++.......+.++++++.....+..++..+.+|||||+.+.. ......+......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~----~~~~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG----KVEEGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCcccc----chhccHHHHHHHH
Confidence 478999999999999999999998877778899999998888888889899999999987641 0122223222233
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc--c------ccccc----CCCceEEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ--K------NINYK----NNIANIYLS 370 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~--~------~~~~~----~~~~~i~vS 370 (472)
....+..+|++++|+|++++.+... ..++..+ ..+.|+++|+||+|+.... . .+.+. ...+++++|
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQD-LRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhH-HHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 4556789999999999998754332 2222222 2568999999999997662 1 12222 246899999
Q ss_pred eccCccHHHHHHHHHHH
Q psy9409 371 ASKRIGINLLRNTLLDL 387 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~ 387 (472)
|++|.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998875
No 47
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.86 E-value=6.2e-21 Score=174.98 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=109.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC------------CeeEEEEeCCCCCccccccccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN------------KFLFKITDTAGIPDINSKIKKN 292 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~------------~~~i~liDTpG~~~~~~~~~~~ 292 (472)
+||+++|++|||||||++++.+..+.. ...++.+.+.....+.+. ...+.+|||||...+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 799999999999999999999887642 334444455554444443 257899999997765
Q ss_pred hhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc-------cccc
Q psy9409 293 INEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK-------NINY 360 (472)
Q Consensus 293 ~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~-------~~~~ 360 (472)
.. ....+++++|++++|+|++++.++.....++..+ ..+.|+++|+||+|+.+... .+.+
T Consensus 77 ~~--------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~ 148 (180)
T cd04127 77 RS--------LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD 148 (180)
T ss_pred HH--------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH
Confidence 22 2344678999999999999876655333333322 24689999999999975432 2344
Q ss_pred cCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 361 KNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 361 ~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
..+++++++||++|.|++++++.|.+.+
T Consensus 149 ~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 149 KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999998765
No 48
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=5.9e-21 Score=191.55 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=119.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..|+|+|.||||||||+|+|.+.... ++++|+||++.....+.+ ++.++.+|||||+.+. ......++ ..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g-------a~~~~gLg-~~ 229 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG-------ASEGAGLG-HR 229 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC-------CCccccHH-HH
Confidence 46999999999999999999987754 699999999999998888 5678999999999764 22111121 23
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC---C---CCCCEEEEEecCCCCcCccc-------ccccCCCceEEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---P---MNIPVIYVWNKIDYSGHQKN-------INYKNNIANIYLS 370 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~---~~~piivV~NK~Dl~~~~~~-------~~~~~~~~~i~vS 370 (472)
.+..++.+|++++|+|+++.++.+....+.+.+ . .++|+++|+||+|+.+.... .....+.+++++|
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iS 309 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLIS 309 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEE
Confidence 455678899999999999865544333333322 1 36899999999999755421 1122356899999
Q ss_pred eccCccHHHHHHHHHHHhhc
Q psy9409 371 ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~~ 390 (472)
|+++.|+++++++|.+.+..
T Consensus 310 Aktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 310 AVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.85 E-value=1.2e-20 Score=170.40 Aligned_cols=147 Identities=22% Similarity=0.242 Sum_probs=111.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||++++++.++.. ...|+...+.....+.+++ ..+.+|||||...+ ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~------- 65 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY-------QTI------- 65 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH-------Hhh-------
Confidence 489999999999999999999887742 3455555666666677776 46789999997765 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
...+++.+|++++|+|++++.+++....+++. ...+.|+++|+||+|+..... .+.+..+++++++||
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 144 (161)
T cd04117 66 -TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSA 144 (161)
T ss_pred -HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 33367899999999999998776644443332 224689999999999975442 234456688999999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|++++|++|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999764
No 50
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.1e-20 Score=168.44 Aligned_cols=152 Identities=32% Similarity=0.437 Sum_probs=115.9
Q ss_pred EEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc
Q psy9409 228 VLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307 (472)
Q Consensus 228 ~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~ 307 (472)
+++|.+|||||||+|+|++.....++..+++|++.......+.+..+.+|||||+.+. ...............
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~~~~~~~~~ 73 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD-------DEGISKEIREQAELA 73 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc-------hhHHHHHHHHHHHHH
Confidence 5789999999999999999887667889999999888888889999999999999886 332222222334456
Q ss_pred cccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCccc--ccccCCC-ceEEEEeccCccHHHHHH
Q psy9409 308 LKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN--INYKNNI-ANIYLSASKRIGINLLRN 382 (472)
Q Consensus 308 ~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~~--~~~~~~~-~~i~vSA~~g~gi~~L~~ 382 (472)
++.+|++++|+|+.++.... ....+++. .+.|+++|+||+|+...... .....+. +++++|+++|.|++++++
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLD 151 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHH
Confidence 78899999999998753322 22233332 46899999999999876542 1112333 789999999999999999
Q ss_pred HHHHHh
Q psy9409 383 TLLDLI 388 (472)
Q Consensus 383 ~l~~~~ 388 (472)
+|.+++
T Consensus 152 ~l~~~~ 157 (157)
T cd01894 152 AILELL 157 (157)
T ss_pred HHHhhC
Confidence 998753
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.2e-20 Score=170.63 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=107.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|+|||||+++|.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~------- 67 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSE-RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF-------RT------- 67 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcc-cCCCccceEEEEEEEEECCEEEEEEEEECCChHHH-------HH-------
Confidence 3799999999999999999999876642 2233334455556667776 47899999997655 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHH---h-CCCCCCEEEEEecCCCCcCcc-------cccccCC-CceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIK---N-FPMNIPVIYVWNKIDYSGHQK-------NINYKNN-IANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~---~-l~~~~piivV~NK~Dl~~~~~-------~~~~~~~-~~~i~v 369 (472)
.....++.+|++++|+|++++.++.....++. . ...+.|+++|+||+|+..... .+.+..+ .+++++
T Consensus 68 -~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (165)
T cd01864 68 -ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLET 146 (165)
T ss_pred -HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEE
Confidence 23446788999999999999865543333322 2 235789999999999975532 2223334 368999
Q ss_pred EeccCccHHHHHHHHHHH
Q psy9409 370 SASKRIGINLLRNTLLDL 387 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~ 387 (472)
||++|.|++++++.+.+.
T Consensus 147 Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 147 SAKESQNVEEAFLLMATE 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 52
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=5.6e-21 Score=177.43 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=108.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|.+|||||||+++|....+. ..+++|+.+.......+++. .+.+|||||...+ .. .
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~--------~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-------TA--------L 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh-------HH--------H
Confidence 5899999999999999999987764 33455554444455566664 4789999998766 22 1
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC-------CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-------PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-------~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...+++.+|++|+|+|++++.+++....++..+ ..+.|+++|+||+|+..... .+.+..+.+++++
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 143 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEA 143 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEe
Confidence 234678899999999999886655333332222 24689999999999964332 1233456789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.+.+.+.
T Consensus 144 SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.85 E-value=1.2e-20 Score=173.06 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=108.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++....+. ..+..|..+.....+.+++ +.+.+|||||...+ ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY-------DR-------- 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccch-------hh--------
Confidence 68999999999999999999988773 3444444444444566666 56789999998876 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
....+++.+|++|+|+|++++.+++ .|...++....+.|+++|+||+|+..... .++
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 1234778999999999999986654 24333433335789999999999865421 122
Q ss_pred ccCC-CceEEEEeccCccHHHHHHHHHHH
Q psy9409 360 YKNN-IANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 360 ~~~~-~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
+..+ .+++++||++|.|++++|+.+.+.
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 2334 679999999999999999998874
No 54
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=1.7e-20 Score=168.85 Aligned_cols=147 Identities=20% Similarity=0.160 Sum_probs=109.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++|++..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~-------- 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-------RS-------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH-------HH--------
Confidence 589999999999999999999887643 3344444455555555655 46889999998765 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.....++.+|++++|+|++++.++.....++.. ..++.|+++|+||+|+..... .+....+.+++++||
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSA 144 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEEC
Confidence 233467889999999999997665533333332 236889999999999975432 233345688999999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|++++++.+.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 55
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.85 E-value=1.5e-20 Score=172.40 Aligned_cols=148 Identities=15% Similarity=0.244 Sum_probs=110.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||+.++....+. ..+..|..+.....+.+++ ..+.+|||+|...+ ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~-------~~-------- 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDY-------NR-------- 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccc-------cc--------
Confidence 58999999999999999999998874 2333343344444556655 46899999998876 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-----------------ccccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------------NINYK 361 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-----------------~~~~~ 361 (472)
....+++++|++|+|+|.+++.+++. |...++....+.|+++|+||+|+.+... .+++.
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 23347889999999999999877653 3333333346799999999999965320 23344
Q ss_pred CCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 362 NNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 362 ~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+. +++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 565 5999999999999999999998763
No 56
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=2.1e-20 Score=169.89 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=110.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+ . .
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~--------~ 68 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF-------R--------S 68 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------H--------H
Confidence 699999999999999999999987653 2333444555455555655 56899999997654 1 1
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|++++.++.....++..+ .++.|+++|+||+|+..... .+....+.+++++||
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA 148 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 2344678899999999999876665444444332 35789999999999974332 123345678999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.+.+.+
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998876
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.85 E-value=1.1e-20 Score=170.34 Aligned_cols=147 Identities=23% Similarity=0.259 Sum_probs=107.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||+++++...+. ..+.+|..+.....+..++. .+.+|||||...+ ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~------- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASM------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccc-------cch-------
Confidence 68999999999999999999988764 23344444555556666664 4778999998776 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++++|++++|+|++++.++..... +.+... .+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 66 -~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd04176 66 -RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETS 144 (163)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEec
Confidence 2235778999999999999865553333 222212 5789999999999865322 22334467899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 145 AKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998754
No 58
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=1e-20 Score=171.36 Aligned_cols=146 Identities=26% Similarity=0.273 Sum_probs=103.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe--CCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++++..+.. ...|. ........+.. ....+.+|||||...+ ..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPT-IEDTYRQVISCSKNICTLQITDTTGSHQF-------PA-------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCc-chheEEEEEEECCEEEEEEEEECCCCCcc-------hH--------
Confidence 789999999999999999999887642 22232 22222223333 3457889999998876 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHH---HHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~---~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
....+++.+|++++|+|++++.+++... ..++.. ..+.|+++|+||+|+..... .+....++++++
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 144 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFME 144 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEE
Confidence 1233567899999999999986655322 233332 15689999999999976332 122345678999
Q ss_pred EEeccCccHHHHHHHHHHH
Q psy9409 369 LSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~ 387 (472)
+||++|.|+++++++|...
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999998753
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=2.3e-20 Score=168.51 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=106.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++++..+.. ...+....+.......+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~-------- 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF-------QT-------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh-------hh--------
Confidence 589999999999999999999887643 2223333333333444444 46889999998765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHH---HHhCCCCCCEEEEEecCCCCcCcc----cccccCCCceEEEEeccCc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKNFPMNIPVIYVWNKIDYSGHQK----NINYKNNIANIYLSASKRI 375 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~l~~~~piivV~NK~Dl~~~~~----~~~~~~~~~~i~vSA~~g~ 375 (472)
....+++.+|++|+|+|++++.++.....+ ++....+.|+++|+||+|+..... .+.+..+++++++||++|.
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGT 144 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 233477899999999999987554433333 332235789999999999854321 2233446789999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|++++++.+.+.+
T Consensus 145 gv~~l~~~l~~~~ 157 (161)
T cd04124 145 NVVKLFQDAIKLA 157 (161)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 60
>KOG0094|consensus
Probab=99.85 E-value=1.4e-20 Score=167.96 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=124.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|..+||||||+++++...+-. +..+....|+...++.+.+. .+++|||+|++.+ ..
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERF---------------rs 86 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------------RS 86 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHH---------------hh
Confidence 799999999999999999999998863 67778889999999999875 5799999999988 23
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CC-CCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PM-NIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~-~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....++++++++|+|||+++..+++....+++.+ .. +.-+++|+||.||.+..+ ..++..+..++++|
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~ets 166 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETS 166 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEec
Confidence 3567999999999999999998877444444443 33 356889999999998765 23445677899999
Q ss_pred eccCccHHHHHHHHHHHhhc
Q psy9409 371 ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~~ 390 (472)
|+.|.||.++|..|...+..
T Consensus 167 ak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred ccCCCCHHHHHHHHHHhccC
Confidence 99999999999999888754
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=2.4e-20 Score=167.83 Aligned_cols=149 Identities=22% Similarity=0.214 Sum_probs=112.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||+++|.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~-------- 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF-------RS-------- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HH--------
Confidence 589999999999999999999887642 4555566666666677766 57889999997655 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.....++.+|++++|+|++++.+.+....++.. ...+.|+++|+||+|+..... .+.+..+++++++||
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 144 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSA 144 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeC
Confidence 233457889999999999987655533333332 235789999999999876332 233445788999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998763
No 62
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.7e-20 Score=197.70 Aligned_cols=158 Identities=25% Similarity=0.358 Sum_probs=121.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+|+|.||||||||+|+|++...+.+.+.||+|+|.......+++.++.+|||||+... ...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~-------~~~~~~~~~~ 109 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPD-------AKGLQASVAE 109 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCc-------chhHHHHHHH
Confidence 347899999999999999999999988888999999999999999999999999999998743 2223222233
Q ss_pred hhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcccccc--cCCC-ceEEEEeccCccH
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY--KNNI-ANIYLSASKRIGI 377 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~--~~~~-~~i~vSA~~g~gi 377 (472)
.+..+++.+|++|+|+|++++.+.. .+..+++ ..++|+++|+||+|+........+ ..+. ..+++||++|.|+
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~--~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATDEAVARVLR--RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGV 187 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCc
Confidence 4556788999999999999874432 2333333 257899999999998654321111 1122 3579999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
++|++.|.+.+.
T Consensus 188 ~eL~~~i~~~l~ 199 (472)
T PRK03003 188 GDLLDAVLAALP 199 (472)
T ss_pred HHHHHHHHhhcc
Confidence 999999998774
No 63
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.84 E-value=2.6e-20 Score=169.90 Aligned_cols=148 Identities=19% Similarity=0.167 Sum_probs=109.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|++|||||||+++++++.+.. ...|....+.....+.+++ ..+.+|||||...+ .. .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~--------~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF-------KC--------I 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-------Hh--------h
Confidence 79999999999999999999987742 3345555566556666665 46899999997765 21 2
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHH----HHHhC-CCCCCEEEEEecCCCCcCcc---------cccccCCCceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNF-PMNIPVIYVWNKIDYSGHQK---------NINYKNNIANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l-~~~~piivV~NK~Dl~~~~~---------~~~~~~~~~~i~v 369 (472)
...+++.+|++++|+|++++.++..... +++.. ....|+++|+||+|+.+... .+.+..+.+++++
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 3346889999999999998755543333 33332 23467999999999865432 1223346789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988774
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=2.4e-20 Score=194.76 Aligned_cols=155 Identities=32% Similarity=0.417 Sum_probs=124.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|+||||||||+|+|++...+.+++.||+|+|.....+.+++..+.+|||||+... .+.+.......+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~-------~~~~~~~~~~~~~ 73 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEED-------DDGLDKQIREQAE 73 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCc-------chhHHHHHHHHHH
Confidence 589999999999999999999998889999999999999999999999999999998654 4444444445567
Q ss_pred cccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcccccc--cCCC-ceEEEEeccCccHHHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY--KNNI-ANIYLSASKRIGINLL 380 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~--~~~~-~~i~vSA~~g~gi~~L 380 (472)
.+++.+|++++|+|++.+.... .+..+++. .++|+++|+||+|+........+ ..+. +++++||++|.|++++
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDL 151 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHH
Confidence 7889999999999998763322 22333332 47899999999998765432221 2344 6899999999999999
Q ss_pred HHHHHHHhh
Q psy9409 381 RNTLLDLIE 389 (472)
Q Consensus 381 ~~~l~~~~~ 389 (472)
++.+.+.+.
T Consensus 152 l~~i~~~l~ 160 (429)
T TIGR03594 152 LDAILELLP 160 (429)
T ss_pred HHHHHHhcC
Confidence 999998873
No 65
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.84 E-value=2.9e-20 Score=170.24 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=106.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||+.+++...+. ..+..|..+.....+.+++ ..+.+|||||...+ ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------DR-------- 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh-------hh--------
Confidence 68999999999999999999987763 3333344454444555665 46789999998765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
....+++++|++|+|+|+++++++.. |...+.....+.|+++|+||+|+.+... .++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 12346789999999999999876552 3333333335789999999999964321 122
Q ss_pred ccCC-CceEEEEeccCccHHHHHHHHHHH
Q psy9409 360 YKNN-IANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 360 ~~~~-~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
+..+ .+++++||++|.|++++++.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 2344 489999999999999999998764
No 66
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.84 E-value=4.1e-20 Score=167.82 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=106.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++++...+.. ...|....+.....+..+ ...+.+|||||...+ ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~------- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF-------GGL------- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh-------ccc-------
Confidence 589999999999999999999766532 223333334433334433 357899999998765 211
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccC
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKR 374 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g 374 (472)
...++..+|++|+|+|++++.++.....+++.+ ..+.|+++|+||+|+..... .+.+..+++++++||++|
T Consensus 66 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 144 (166)
T cd00877 66 -RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSN 144 (166)
T ss_pred -cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCC
Confidence 123567899999999999886655333333332 24799999999999974332 122344678999999999
Q ss_pred ccHHHHHHHHHHHhhc
Q psy9409 375 IGINLLRNTLLDLIEK 390 (472)
Q Consensus 375 ~gi~~L~~~l~~~~~~ 390 (472)
.|+++++++|.+.+..
T Consensus 145 ~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 145 YNFEKPFLWLARKLLG 160 (166)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999988743
No 67
>KOG0078|consensus
Probab=99.84 E-value=2.3e-20 Score=169.75 Aligned_cols=152 Identities=23% Similarity=0.174 Sum_probs=126.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|.+|||||+++-++..+.+.. +.......|+...++.++|. .+++|||+|+..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf-------------- 74 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-SFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF-------------- 74 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcC-CccceEEEEEEEEEEEeCCeEEEEEEEEcccchhH--------------
Confidence 345899999999999999999999998863 55666778998999999886 5789999999987
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+..+++.|+.+++|||+++..+++. |...++... ...|.++|+||+|+...+. .++...|+++++
T Consensus 75 -~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~E 153 (207)
T KOG0078|consen 75 -RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFE 153 (207)
T ss_pred -HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEE
Confidence 3446779999999999999999877763 444444333 5889999999999988553 466678999999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+|||+|.||++.|-.|.+.+.
T Consensus 154 tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 68
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=3.3e-20 Score=175.92 Aligned_cols=146 Identities=20% Similarity=0.183 Sum_probs=106.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+||+++|.+|||||||+++|+...+. ...|.+..+... ..+..+.+.+|||||...+ ... .
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~~--~~~~~~~l~iwDt~G~e~~-------~~l--------~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFYL--KQWGPYNISIWDTAGREQF-------HGL--------G 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEEE--EEeeEEEEEEEeCCCcccc-------hhh--------H
Confidence 58999999999999999999998874 234433333322 2345678999999998776 221 2
Q ss_pred hcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcC-------------------cc-----
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGH-------------------QK----- 356 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~-------------------~~----- 356 (472)
..+++.+|++|+|||++++.++. +|..+.+....+.|+++|+||+|+... ..
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 23578999999999999986655 344444333356899999999999751 11
Q ss_pred --cccccCC--------------CceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 --NINYKNN--------------IANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 --~~~~~~~--------------~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++..+ .+++++||++|.||+++|..+.+.+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222222 57999999999999999999998763
No 69
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=2.9e-20 Score=169.42 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=112.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
|+.+||+++|.+|||||||++++++..+......|.+..+.....+.+++ ..+.+|||+|...+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-------------- 67 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA-------------- 67 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc--------------
Confidence 46689999999999999999999998875112333333444445566666 46789999998765
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecCCCCcCcc-------cccccCCC-ceEEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKIDYSGHQK-------NINYKNNI-ANIYL 369 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~Dl~~~~~-------~~~~~~~~-~~i~v 369 (472)
......+++++|++++|+|++++.+++....+++.+. .+.|+++|+||+|+.+... .+.+..+. +++++
T Consensus 68 -~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T cd01892 68 -ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF 146 (169)
T ss_pred -cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence 1123346789999999999998766554445555442 4689999999999965431 23334454 46999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 147 Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 147 SSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EeccCccHHHHHHHHHHHhh
Confidence 99999999999999988764
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=3e-20 Score=167.29 Aligned_cols=148 Identities=23% Similarity=0.256 Sum_probs=107.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||+|+|++.++.. ...+.+..+.....+.+++ ..+.+|||||...+ ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~-------~~-------- 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY-------RS-------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-------HH--------
Confidence 689999999999999999999988753 2333333333344445544 57889999997654 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|++++.++.....++.. .....|+++|+||+|+..... .+....+.+++++||
T Consensus 66 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd01860 66 LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSA 145 (163)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEEC
Confidence 133467889999999999987655533333332 235689999999999874322 123344678999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.|.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 146 KTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998865
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=4.7e-20 Score=172.57 Aligned_cols=150 Identities=22% Similarity=0.204 Sum_probs=112.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+++|.+..+.. ...|+.+.+.....+.+++ ..+.||||||...+ ..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~------- 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-------RT------- 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-------HH-------
Confidence 4799999999999999999999887642 3344444555555666665 46889999997765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHh---CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|++++.++.....+++. .....|+++|+||+|+.+... .+.+..+.+++++||
T Consensus 71 -~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 149 (199)
T cd04110 71 -ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSA 149 (199)
T ss_pred -HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 233467889999999999988665533333332 235789999999999976432 123345678999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|+++++++|.+.+.
T Consensus 150 ~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 150 KENINVEEMFNCITELVL 167 (199)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999998873
No 72
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=4.3e-20 Score=169.80 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=107.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+..+. ..+..|..+.....+.+++ ..+.+|||||...+ ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~-------~~-------- 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY-------DN-------- 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh-------hh--------
Confidence 68999999999999999999998774 3333333333344566665 46789999997765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcC-----------c--c------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGH-----------Q--K------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~-----------~--~------~~~ 359 (472)
....+++.+|++|+|+|++++.+++. |...++...+..|+++|+||+||.+. . . .++
T Consensus 65 ~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 65 VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 13347889999999999999877653 33333333467899999999999641 1 0 244
Q ss_pred ccCCC-ceEEEEeccCcc-HHHHHHHHHHH
Q psy9409 360 YKNNI-ANIYLSASKRIG-INLLRNTLLDL 387 (472)
Q Consensus 360 ~~~~~-~~i~vSA~~g~g-i~~L~~~l~~~ 387 (472)
+..++ +++++||++|.| ++++|..+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 45665 799999999995 99999998874
No 73
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.84 E-value=3.7e-20 Score=170.82 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||++++....+. ..+..|..+.....+.+++ ..+.+|||+|...+ ..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~-------~~------- 68 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------DN------- 68 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhh-------Hh-------
Confidence 479999999999999999999998774 3333343344444556665 46899999998765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcC-----------cc--------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGH-----------QK--------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~-----------~~--------~~ 358 (472)
....+++.+|++|+|+|++++.+++. |...++...+..|+++|+||+|+... .. .+
T Consensus 69 -~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 69 -VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred -hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 13347889999999999999877653 33333333467899999999998642 10 24
Q ss_pred cccCCC-ceEEEEeccCcc-HHHHHHHHHHH
Q psy9409 359 NYKNNI-ANIYLSASKRIG-INLLRNTLLDL 387 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~g-i~~L~~~l~~~ 387 (472)
++..++ +++++||++|.| ++++|+.+.+.
T Consensus 148 a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 148 AKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 445674 899999999998 99999998875
No 74
>PTZ00369 Ras-like protein; Provisional
Probab=99.84 E-value=3.4e-20 Score=172.01 Aligned_cols=149 Identities=21% Similarity=0.228 Sum_probs=109.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||++++.+..+. ..+..|..+.....+.+++. .+.+|||||..++ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~l------ 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEY-------SAM------ 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccc-------hhh------
Confidence 489999999999999999999988764 23333333444455556554 5778999998877 322
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHH----HHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...+++.+|++++|+|++++.+++... .+.+... .+.|+++|+||+|+..... .+.+..+.+++++
T Consensus 70 --~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 147 (189)
T PTZ00369 70 --RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLET 147 (189)
T ss_pred --HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEe
Confidence 223677899999999999986655333 3333222 4789999999999865421 2233456789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 148 Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 148 SAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 75
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.84 E-value=4.2e-20 Score=168.22 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=103.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..+||+++|.+|||||||+++|....+. ...|+++.+. ..+...+..+.+|||||...+ ...
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~-------~~~------- 69 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKI-------RPL------- 69 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHH-------HHH-------
Confidence 4589999999999999999999877653 3344444433 244457789999999998765 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--ccc------cc--CCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NIN------YK--NNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~------~~--~~~~~i 367 (472)
...+++.+|++|+|+|++++.++..+...+..+ ..+.|+++|+||+|+..... .+. .. ...+++
T Consensus 70 -~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 70 -WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred -HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEE
Confidence 234678999999999999876555333322221 14689999999999864321 111 11 124689
Q ss_pred EEEeccCccHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~ 386 (472)
++||++|.|+++++++|.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999864
No 76
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=4.3e-20 Score=165.98 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=104.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCccee--cccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIV--TSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v--~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+.|+++|++|||||||+|+|.+...... ...+++|.+.....+.+. +..+.+|||||+..+ .
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---------------~ 65 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---------------I 65 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---------------H
Confidence 3689999999999999999997543222 234677887776777776 789999999998765 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------c----cccc--CCCceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------N----INYK--NNIANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~----~~~~--~~~~~i 367 (472)
......+..+|++++|+|+++..... ....+++.. ...|+++|+||+|+..... . +... .+.+++
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 22344678899999999998731111 111222222 2349999999999976421 1 1111 357899
Q ss_pred EEEeccCccHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~ 386 (472)
++||++|.|++++++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998864
No 77
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.84 E-value=5.9e-20 Score=169.50 Aligned_cols=149 Identities=23% Similarity=0.277 Sum_probs=109.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++++..+.. ...|+...+.....+..++ ..+.+|||+|...+ ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~-------~~-------- 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF-------IN-------- 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH-------HH--------
Confidence 589999999999999999999887742 3445555566666777776 46899999998766 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHH---hC-CCCCCEEEEEecCCCCcC----cc--------cccccCCCce
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIK---NF-PMNIPVIYVWNKIDYSGH----QK--------NINYKNNIAN 366 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~---~l-~~~~piivV~NK~Dl~~~----~~--------~~~~~~~~~~ 366 (472)
....+++++|++++|+|++++.++.....++. .. ....| ++|+||+|+... .. .+++..++++
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 143 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL 143 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence 13347889999999999999866553333322 22 23455 689999999531 11 2334456889
Q ss_pred EEEEeccCccHHHHHHHHHHHhhc
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+++||++|.|++++++++.+.+..
T Consensus 144 ~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 144 IFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987754
No 78
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=3.4e-20 Score=165.75 Aligned_cols=150 Identities=27% Similarity=0.395 Sum_probs=110.1
Q ss_pred EEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccc
Q psy9409 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVEL 308 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~ 308 (472)
++|.+|||||||+|++.+... .+++.+++|.+.....+.+++..+.+|||||+..+.. ...... +.......
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~-----~~~~~~--~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSP-----YSEDEK--VARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCC-----CChhHH--HHHHHhcC
Confidence 579999999999999999874 4578899999988888889889999999999987511 000011 11111111
Q ss_pred ccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHHHHHH
Q psy9409 309 KNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 309 ~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
..+|++++|+|++++.....+...+. ..++|+++|+||+|+.+... .+....+.+++++||++|.|++++++
T Consensus 73 ~~~d~vi~v~d~~~~~~~~~~~~~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLERNLYLTLQLL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchhHHHHHHHHH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 68999999999998643222222222 25789999999999976532 22334567899999999999999999
Q ss_pred HHHHHh
Q psy9409 383 TLLDLI 388 (472)
Q Consensus 383 ~l~~~~ 388 (472)
.|.+..
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 998753
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.84 E-value=3.5e-20 Score=166.63 Aligned_cols=147 Identities=25% Similarity=0.228 Sum_probs=105.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+..+.. ...|..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~-------- 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-------RT-------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-------hh--------
Confidence 589999999999999999999887643 2333333333333344444 57899999997665 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHH----HhC-CCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKII----KNF-PMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il----~~l-~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA 371 (472)
.....++.+|++++|+|.+++.++.....++ +.. ..+.|+++|+||+|+..... .+....+++++++||
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 65 LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence 1234568899999999999876555333332 222 25789999999999974332 233345788999999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|++++++.+.+.
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998765
No 80
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=3.9e-20 Score=174.79 Aligned_cols=149 Identities=21% Similarity=0.198 Sum_probs=112.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-C--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-K--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||+|+|++..+.. ...|+++.+.....+.+. + ..+.+|||||...+ ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~------- 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-------RS------- 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-------HH-------
Confidence 799999999999999999999988754 234555567666666653 3 47899999997765 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHH----HhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKII----KNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il----~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++++|++++|+|++++.+++....++ +... ...|+++|+||+|+..... .+.+..+.+++++
T Consensus 68 -~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 146 (211)
T cd04111 68 -ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIET 146 (211)
T ss_pred -HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEE
Confidence 2334678999999999999986655333333 3332 3567899999999976432 2344556889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 147 Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998774
No 81
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.83 E-value=5.1e-20 Score=171.20 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=109.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||++++....+. ..+..|..+.....+.+++ ..+.+|||||...+ ..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~------- 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-------DR------- 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh-------hh-------
Confidence 379999999999999999999988774 2233333333344455555 46889999998776 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~ 358 (472)
....+++++|++|+|||++++.+++. |...+.....+.|+++|+||+||.+... .+
T Consensus 67 -l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 67 -LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred -hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 13346789999999999999876653 3332222235799999999999965421 12
Q ss_pred cccCC-CceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 359 NYKNN-IANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 ~~~~~-~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++..+ .+++++||++|.|++++|+.+.+.+..
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 23345 589999999999999999999988743
No 82
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.83 E-value=8e-20 Score=169.78 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=107.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCcee-eeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT-RDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt-~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||+++|++..+.. .++.+|. .+.....+.+++. .+.+|||||...+ ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~------- 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-------EA------- 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-------hh-------
Confidence 489999999999999999999887642 2333333 3333455667665 4669999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhCCCCCCEEEEEecCCCCcCcc-----------cccccCCCceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------NINYKNNIANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l~~~~piivV~NK~Dl~~~~~-----------~~~~~~~~~~i 367 (472)
....+++.+|++++|+|++++.+++. |...+.....+.|+++|+||+|+..... .+....+.+++
T Consensus 66 -~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 66 -MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred -hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 12335678999999999998766543 3333333345789999999999864321 12233457899
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|++++++.+.+.+.
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998874
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=5.3e-20 Score=170.04 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=106.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-C--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-K--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+||+++|++|||||||+++|.+..+. ..+..+..+.....+... + ..+.+|||||...+ ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~------- 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-------DR------- 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH-------HH-------
Confidence 48999999999999999999998774 233333333333334443 3 46899999997765 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-----------cccccCCC-c
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------NINYKNNI-A 365 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-----------~~~~~~~~-~ 365 (472)
....+++.+|++++|+|++++.+++. |...+.....+.|+++|+||+|+..... .+....+. +
T Consensus 65 -~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 65 -LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred -HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 12336789999999999998866652 3322333346789999999999965421 22334555 8
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|++++++.+.+.+.
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998874
No 84
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=8.1e-20 Score=169.18 Aligned_cols=149 Identities=23% Similarity=0.197 Sum_probs=111.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++|.+..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~-------- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF-------RS-------- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------Hh--------
Confidence 589999999999999999999988753 2344445555555566655 46789999997765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.....++.+|++++|+|++++.++.....++.. .....|+++|+||+|+.+... .+.+..+++++++||
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 144 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSA 144 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeC
Confidence 234467899999999999988665533333332 234689999999999975432 233345678999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 145 KQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998874
No 85
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.2e-20 Score=193.80 Aligned_cols=157 Identities=26% Similarity=0.404 Sum_probs=125.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+++|+||||||||+|+|+|.+.. |+++||+|.+..+..+...+..+.++|.||..+... ...-|. +.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~-----~S~DE~--Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA-----YSEDEK--VARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCC-----CCchHH--HHHH
Confidence 56999999999999999999998875 699999999999999999999999999999998621 111122 3333
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
+-.-.++|+++.|+|+++.+. ...-.++.++.+.|+++++|++|...... .+.+..|+|++++||++|.|++
T Consensus 76 ~ll~~~~D~ivnVvDAtnLeR--nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 76 FLLEGKPDLIVNVVDATNLER--NLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred HHhcCCCCEEEEEcccchHHH--HHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 333456899999999998643 22333344457899999999999987654 4567789999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy9409 379 LLRNTLLDLIEKT 391 (472)
Q Consensus 379 ~L~~~l~~~~~~~ 391 (472)
++++.+.+....+
T Consensus 154 ~l~~~i~~~~~~~ 166 (653)
T COG0370 154 ELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHhcccc
Confidence 9999998876543
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=4.7e-20 Score=166.27 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=101.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+||+++|.+|||||||++++....+. ...|++..+. ..+..+...+.+|||||+..+ .. ..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~-------~~--------~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI-------RP--------LW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEECCEEEEEEECCCCHhH-------HH--------HH
Confidence 58999999999999999999776653 3344333332 345567889999999998765 22 23
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhC-C----CCCCEEEEEecCCCCcCcc--cccc--------cCCCceEEE
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P----MNIPVIYVWNKIDYSGHQK--NINY--------KNNIANIYL 369 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~----~~~piivV~NK~Dl~~~~~--~~~~--------~~~~~~i~v 369 (472)
..+++++|++|+|+|+++..++......+..+ . ...|+++|+||+|+.+... .+.. ...+.++++
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQAT 141 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEe
Confidence 34789999999999999875555333322222 1 3589999999999965421 1111 112346799
Q ss_pred EeccCccHHHHHHHHHH
Q psy9409 370 SASKRIGINLLRNTLLD 386 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~ 386 (472)
||++|.|+++++++|.+
T Consensus 142 Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 142 CATSGDGLYEGLDWLSN 158 (159)
T ss_pred eCCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 87
>PLN03110 Rab GTPase; Provisional
Probab=99.83 E-value=7.4e-20 Score=173.49 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=115.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+++|.+..+.. ...++...+.....+.+++ ..+.||||||...+ ..
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~-------~~------- 76 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY-------RA------- 76 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH-------HH-------
Confidence 4799999999999999999999988753 4456666677677777766 47899999997765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHH----hCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIK----NFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~----~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++|+|+|++++.+++....++. ....+.|+++|+||+|+..... .+....+++++++|
T Consensus 77 -~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S 155 (216)
T PLN03110 77 -ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS 155 (216)
T ss_pred -HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 23346789999999999998866553333332 2235789999999999865432 23345678999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 156 A~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIY 174 (216)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988774
No 88
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=5.9e-20 Score=167.40 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=106.1
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
|+++|++|||||||++++.+..+. ..+..+..+.....+.+++. .+.+|||||...+ .. ..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~--------~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY-------DR--------LR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc-------ch--------hc
Confidence 589999999999999999998874 23333444444455666664 5889999998776 21 12
Q ss_pred hcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccccc
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NINYK 361 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~~~ 361 (472)
...+..+|++|+|+|++++.+++. |...+.....+.|+++|+||+|+..... .+.+.
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 346788999999999998766552 3333333336899999999999975321 13334
Q ss_pred CCC-ceEEEEeccCccHHHHHHHHHHHh
Q psy9409 362 NNI-ANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 362 ~~~-~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+. +++++||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 454 799999999999999999998865
No 89
>PLN03118 Rab family protein; Provisional
Probab=99.83 E-value=5e-20 Score=173.94 Aligned_cols=151 Identities=23% Similarity=0.205 Sum_probs=110.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+++|++..+... .|.++.+.....+.+++ ..+.||||||...+ ...
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~----- 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL--APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF-------RTL----- 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc--CCCceeEEEEEEEEECCEEEEEEEEECCCchhh-------HHH-----
Confidence 358999999999999999999999876433 33344444444555554 57899999998776 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhC--CCCCCEEEEEecCCCCcCcc-------cccccCCCceE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNF--PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANI 367 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i 367 (472)
...+++.+|++|+|+|.+++.++.. |...+... ....|+++|+||+|+..... .+....+++++
T Consensus 79 ---~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 79 ---TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEE
Confidence 2346788999999999998765552 33333332 24579999999999975432 12234567899
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|++++++.|.+.+..
T Consensus 156 e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 156 ECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988843
No 90
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=4.9e-20 Score=168.23 Aligned_cols=145 Identities=20% Similarity=0.269 Sum_probs=104.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+++|.+..+..+.+..+ .....+.+++..+.+|||||...+ ...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~l~D~~G~~~~-------~~~------- 74 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLG----FQIKTLEYEGYKLNIWDVGGQKTL-------RPY------- 74 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc----cceEEEEECCEEEEEEECCCCHHH-------HHH-------
Confidence 45899999999999999999999886543322222 223455667889999999998765 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH----HHHHHHhC-CCCCCEEEEEecCCCCcCcc--ccc--------ccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNF-PMNIPVIYVWNKIDYSGHQK--NIN--------YKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l-~~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~i 367 (472)
...+++.+|++++|+|++++.++.. +..+++.. ..+.|+++|+||+|+..... .+. ....++++
T Consensus 75 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (173)
T cd04154 75 -WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQ 153 (173)
T ss_pred -HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEE
Confidence 2346789999999999998754442 23333221 25789999999999975432 111 12346799
Q ss_pred EEEeccCccHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~ 386 (472)
++||++|.|++++++++.+
T Consensus 154 ~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 154 PCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred eccCCCCcCHHHHHHHHhc
Confidence 9999999999999998854
No 91
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=7.1e-20 Score=201.77 Aligned_cols=162 Identities=27% Similarity=0.339 Sum_probs=123.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|+||||||||+|+|++.++..+++.+|||+|.....+.+++.++.+|||||+.... ......+.....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~----~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQ----HKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCc----ccchhHHHHHHH
Confidence 3479999999999999999999999988889999999999998899999999999999987530 001112222233
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------ccc----ccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NIN----YKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~----~~~~~~~i~vSA 371 (472)
++...++.+|++++|+|++++.+.... .++..+ ..++|+++|+||+|+.+... .+. .....+++++||
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~-~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDL-KVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHH-HHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 455678899999999999987544322 222222 35789999999999976432 111 122457899999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|+++|++.+.+.+.
T Consensus 604 ktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999999874
No 92
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=6.7e-20 Score=170.10 Aligned_cols=148 Identities=17% Similarity=0.167 Sum_probs=106.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|++|||||||++++.+..+.. .+..|..+.....+..++ ..+.+|||||...+ .. .
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-------~~--------l 64 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-------DR--------L 64 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhc-------cc--------c
Confidence 79999999999999999999987753 222232222333444555 56899999998765 11 1
Q ss_pred hhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cccc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NINY 360 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~~ 360 (472)
...++..+|++++|+|++++.+++. |...+.....+.|+++|+||+|+..... .+.+
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK 144 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 2336789999999999999866642 3333333235789999999999976431 1112
Q ss_pred cCC-CceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 361 KNN-IANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 361 ~~~-~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
..+ ++++++||++|.|++++|++|.+.+..
T Consensus 145 ~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 145 RINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 223 679999999999999999999988743
No 93
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=9.2e-20 Score=164.36 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=105.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCC--CcceecccCceeeeEEEEEEEeC---CeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS--DVAIVTSIAGTTRDKITKTIQIN---KFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~--~~~~v~~~~gtt~d~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
+||+++|++|||||||+++|.+. .+. ....+++..+.....+.+. ...+.+|||||...+ ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~---- 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP-KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY-------SDM---- 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH-------HHH----
Confidence 48999999999999999999865 332 1233334455555555443 367999999997654 222
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh---CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...++..+|++++|+|.+++.++.....+++. ...+.|+++|+||+|+.+... .+....+++++++
T Consensus 69 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04101 69 ----VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKT 144 (164)
T ss_pred ----HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 23356899999999999987655433333333 235689999999999965432 1233456789999
Q ss_pred EeccCccHHHHHHHHHHHh
Q psy9409 370 SASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~ 388 (472)
||++|.|++++++.|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 145 SALRGVGYEEPFESLARAF 163 (164)
T ss_pred eCCCCCChHHHHHHHHHHh
Confidence 9999999999999998764
No 94
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.83 E-value=4e-20 Score=167.25 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=103.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc---eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA---IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~---~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+|+++|++|+|||||+|+|.+.... .......+|.......+.+++..+.+|||||+..+ ..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~-------- 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-------RS-------- 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-------HH--------
Confidence 5899999999999999999875321 11122234444444567778899999999998776 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC-CCCCCEEEEEecCCCCcCcc--c----ccc------cCCCc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF-PMNIPVIYVWNKIDYSGHQK--N----INY------KNNIA 365 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l-~~~~piivV~NK~Dl~~~~~--~----~~~------~~~~~ 365 (472)
....++..+|++++|+|++++.+.... ..+++.. ..+.|+++|+||+|+..... . +.. ..+.+
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 233467899999999999886544322 3333221 25789999999999876532 1 111 12457
Q ss_pred eEEEEeccCccHHHHHHHHHH
Q psy9409 366 NIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~ 386 (472)
++++||++|.|+++++++|.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999864
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.83 E-value=9.6e-20 Score=166.92 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=105.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..+||+++|.+|||||||++++...++. ...|++..+. ..+..++..+.+|||||...+ ..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~-------~~-------- 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNV--ETVTYKNISFTVWDVGGQDKI-------RP-------- 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccce--EEEEECCEEEEEEECCCChhh-------HH--------
Confidence 4589999999999999999999766552 3344444443 244567889999999998765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--ccccc--------CCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NINYK--------NNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~~~--------~~~~~i 367 (472)
....+++++|++|+|+|++++.+.+...+.+..+ ..+.|+++|+||+|+.+... .+.+. ..+.++
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEE
Confidence 2344688999999999999876555333333222 14689999999999975421 11111 123466
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++||++|.|+++++++|.+.+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999998765
No 96
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=6.6e-20 Score=174.18 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|.+|||||||+++++...+.. ...|+...+.....+..+ ...+.+|||||...+ ..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------ 77 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GG------ 77 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCC-ccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------hh------
Confidence 44799999999999999999998776632 223333334444444443 368899999998776 21
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHH---HHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEec
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSAS 372 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~ 372 (472)
....+++.+|++|+|||.+++.++.....+ +.....+.|+++|+||+|+..... .+.+..+++++++||+
T Consensus 78 --~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk 155 (219)
T PLN03071 78 --LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 155 (219)
T ss_pred --hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCC
Confidence 123467899999999999998666533333 222336799999999999964321 2233456789999999
Q ss_pred cCccHHHHHHHHHHHhh
Q psy9409 373 KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~ 389 (472)
+|.|++++|++|.+.+.
T Consensus 156 ~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 156 SNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998874
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=1.1e-19 Score=162.98 Aligned_cols=148 Identities=26% Similarity=0.199 Sum_probs=108.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||+|+|++..+.. ...+.++.+.....+.+.+. .+.+|||||...+ ..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~-------- 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HA-------- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HH--------
Confidence 589999999999999999999887753 33444445555555665554 5889999996654 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|++++.+...... +......+.|+++|+||+|+..... .+.+..+.+++++||
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 144 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSA 144 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 12235678999999999998765443322 3333334789999999999975432 123345678999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|+++++++|.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 98
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.7e-19 Score=196.12 Aligned_cols=157 Identities=26% Similarity=0.383 Sum_probs=121.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+|+|.||||||||+|+|++...+++++.||+|++.......+++..+.+|||||+... .+.+.......+
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~-------~~~~~~~~~~~~ 348 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD-------VEGIDSAIASQA 348 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCC-------CccHHHHHHHHH
Confidence 5799999999999999999999988889999999999999999999999999999998753 222333334456
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcccccc--cCC-CceEEEEeccCccHHHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNINY--KNN-IANIYLSASKRIGINLL 380 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~~~~~--~~~-~~~i~vSA~~g~gi~~L 380 (472)
..+++.+|++|+|+|+++.. ......+.+.+ ..++|+++|+||+|+........+ ..+ ...+++||++|.|+++|
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~-~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGL-TSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred HHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHH
Confidence 66788999999999998752 22222233222 368999999999998654322111 112 24679999999999999
Q ss_pred HHHHHHHhh
Q psy9409 381 RNTLLDLIE 389 (472)
Q Consensus 381 ~~~l~~~~~ 389 (472)
++.|.+.+.
T Consensus 428 l~~i~~~l~ 436 (712)
T PRK09518 428 LDEALDSLK 436 (712)
T ss_pred HHHHHHhcc
Confidence 999998873
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.83 E-value=8.9e-20 Score=163.93 Aligned_cols=147 Identities=21% Similarity=0.255 Sum_probs=110.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++|+...+. ..+.+++.+.......+++ ..+.+|||||...+ ..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~-------- 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-------AA-------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------hH--------
Confidence 58999999999999999999987764 4555666665555556654 46899999998766 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....++.+|++++|+|.+++.++. ++..+.... ..+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETS 143 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEee
Confidence 2334678899999999999875443 334444332 25799999999999976221 22334567899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|++++++.+.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 100
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.4e-19 Score=195.91 Aligned_cols=160 Identities=23% Similarity=0.319 Sum_probs=120.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|+||||||||+|+|++... .++++||+|.+.....+.+++.++.++||||+.+.... ..+...-|. +.+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~-~~~~s~~E~--i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI-SSQTSLDEQ--IAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccc-cccccHHHH--HHH
Confidence 36899999999999999999999876 57999999999999999999999999999999876111 000111111 222
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.......+|++++|+|+++.+....+...+. +.+.|+++|+||+|+.+... .+.+..++|++++||++|.|+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l~l~~ql~--e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GI 156 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNLYLTLQLL--ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGI 156 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhHHHHHHHH--HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCH
Confidence 2223468999999999998643332222222 35799999999999875432 345567899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
+++++.+.+...
T Consensus 157 deL~~~I~~~~~ 168 (772)
T PRK09554 157 EALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHhhh
Confidence 999999988753
No 101
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=1.1e-19 Score=173.40 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=109.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||++++.+..+.. ...|... +.....+.+++ ..+.||||+|...+ ..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~-~~~~~~i~~~~~~v~l~iwDTaG~e~~-------~~------- 76 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVF-ENYTAGLETEEQRVELSLWDTSGSPYY-------DN------- 76 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCcee-eeeEEEEEECCEEEEEEEEeCCCchhh-------HH-------
Confidence 4799999999999999999999887742 2333333 33334455655 46899999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcC------------cc-------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGH------------QK-------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~------------~~-------~~ 358 (472)
....+++.+|++|+|||++++.+++. |...+....+..|+++|+||+|+... .. .+
T Consensus 77 -~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 77 -VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred -HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 23347899999999999999876652 33333333357899999999998642 11 24
Q ss_pred cccCCC-ceEEEEeccCc-cHHHHHHHHHHHhh
Q psy9409 359 NYKNNI-ANIYLSASKRI-GINLLRNTLLDLIE 389 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~-gi~~L~~~l~~~~~ 389 (472)
++..++ +++++||++|. |++++|+.+...+.
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 445677 59999999998 89999999988763
No 102
>KOG0394|consensus
Probab=99.83 E-value=3.5e-20 Score=163.91 Aligned_cols=152 Identities=24% Similarity=0.292 Sum_probs=120.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
+..+||.++|.+|||||||+|++...++.. ........|+....+.+++. .+++|||+|+..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERF-------------- 71 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERF-------------- 71 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHh--------------
Confidence 345799999999999999999999998864 45556677888888888774 5789999998887
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC----CCCCEEEEEecCCCCcCcc---------ccc-cc
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP----MNIPVIYVWNKIDYSGHQK---------NIN-YK 361 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~----~~~piivV~NK~Dl~~~~~---------~~~-~~ 361 (472)
-+....+++.+|++++++|+..+.+++ |-.+++.+.. ...|+|+++||+|+..... .+. ..
T Consensus 72 -qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 72 -QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK 150 (210)
T ss_pred -hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc
Confidence 122356899999999999999987766 3344555443 4579999999999976431 232 24
Q ss_pred CCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 362 NNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 362 ~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.++|++++|||.+.|+++.|+.+.+.+.
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHHH
Confidence 5689999999999999999999988774
No 103
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.83 E-value=1.2e-19 Score=165.44 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=107.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||++++.+..+. ..+.++..+.....+.+++. .+.+|||||...+ ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~-------- 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY-------DR-------- 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------cc--------
Confidence 58999999999999999999988764 33444555555556666664 4779999998765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
.....+..+|++++|+|.+++.+++ .|...+.....+.|+++|+||+|+.+... .+.
T Consensus 64 ~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 64 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 1224678899999999999886654 23344443357899999999999865421 112
Q ss_pred ccCCC-ceEEEEeccCccHHHHHHHHHHHh
Q psy9409 360 YKNNI-ANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 360 ~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+..++ +++++||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 23343 699999999999999999988754
No 104
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=8.1e-20 Score=187.89 Aligned_cols=157 Identities=23% Similarity=0.273 Sum_probs=117.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..|+++|.||||||||+|+|++.... ++++|+||.+.....+.+. +..+.+|||||+.+. ......++ ..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGlieg-------a~~~~gLg-~~ 229 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEG-------ASEGVGLG-HQ 229 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCccc-------ccccchHH-HH
Confidence 36999999999999999999998865 5899999999988888887 789999999999764 22111221 22
Q ss_pred hhcccccccEEEEEEeCCCC---CCchHHHHHHHhC---C---CCCCEEEEEecCCCCcCcc---cccccCCCceEEEEe
Q psy9409 304 TWVELKNSDIIIYVQDARYD---KHTDFDKKIIKNF---P---MNIPVIYVWNKIDYSGHQK---NINYKNNIANIYLSA 371 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~---~~~~~~~~il~~l---~---~~~piivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA 371 (472)
.+..+.++|++++|+|+++. ++.+.+..+.+.+ . ..+|+++|+||+|+..... .+.+..+.+++++||
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA 309 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISA 309 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeC
Confidence 44556789999999999864 3333333333332 1 3689999999999854432 233334468999999
Q ss_pred ccCccHHHHHHHHHHHhhc
Q psy9409 372 SKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~~ 390 (472)
+++.|+++|+++|.+.+..
T Consensus 310 ~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988853
No 105
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=5.7e-20 Score=184.29 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=116.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..|+|+|.||||||||+|+|.+.... ++++|+||.+.....+.+++ .++.+|||||+.+. ......+ ...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~-------a~~~~gL-g~~ 228 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG-------ASEGAGL-GHR 228 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC-------CcccccH-HHH
Confidence 46999999999999999999987654 68999999998888888877 89999999999764 1111111 112
Q ss_pred hhcccccccEEEEEEeCCCC---CCchHHHHH---HHhCC---CCCCEEEEEecCCCCcCcc------cccccCCCceEE
Q psy9409 304 TWVELKNSDIIIYVQDARYD---KHTDFDKKI---IKNFP---MNIPVIYVWNKIDYSGHQK------NINYKNNIANIY 368 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~---~~~~~~~~i---l~~l~---~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~ 368 (472)
.+..+.++|++++|+|+++. .+.+.+..+ +.... ..+|+++|+||+|+..... .+.+..+.++++
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~ 308 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFP 308 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEE
Confidence 34456789999999999975 233322222 22221 4689999999999976532 123334578999
Q ss_pred EEeccCccHHHHHHHHHHHh
Q psy9409 369 LSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~ 388 (472)
+||+++.|+++++++|.+.+
T Consensus 309 iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEccCCcCHHHHHHHHHHHh
Confidence 99999999999999998764
No 106
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=1.3e-19 Score=164.96 Aligned_cols=149 Identities=20% Similarity=0.226 Sum_probs=110.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++++..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~------- 67 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKS------- 67 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHh-------
Confidence 689999999999999999999877642 3344455556566666666 57899999997655 211
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++++|++++|+|++++.++.....+++.+ ..+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETS 147 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEe
Confidence 1233578899999999999886665333333222 25689999999999865442 23344568899999
Q ss_pred ecc---CccHHHHHHHHHHHh
Q psy9409 371 ASK---RIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~---g~gi~~L~~~l~~~~ 388 (472)
|++ +.|+++++..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 899999999988765
No 107
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=1.5e-19 Score=164.14 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=108.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+..+.. ...+..+.+.....+.+.+. .+.+|||||...+ ..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~-------- 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF-------QS-------- 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------Hh--------
Confidence 589999999999999999999987642 33344455555566666664 5679999997665 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC----CCCCEEEEEecCCCCcCcc-------cccccCC-Cce
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP----MNIPVIYVWNKIDYSGHQK-------NINYKNN-IAN 366 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~----~~~piivV~NK~Dl~~~~~-------~~~~~~~-~~~ 366 (472)
....+++++|++|+|+|++++.++... ..++..+. .+.|+++|+||+|+..+.. .+.+..+ .++
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPY 144 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceE
Confidence 233467889999999999987554422 23333332 3789999999999984221 1222333 689
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|++++++.+.+.+.
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 108
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=2.6e-19 Score=160.36 Aligned_cols=156 Identities=28% Similarity=0.412 Sum_probs=115.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..+|+++|++|+|||||+|+|++.+.+.+.+.+.++++.........+..+.+|||||+... ...........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-------~~~~~~~~~~~ 75 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP-------KKKLGERMVKA 75 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc-------hHHHHHHHHHH
Confidence 36899999999999999999999988777778888887777777777789999999998865 32222211223
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccC-CCceEEEEeccC
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKN-NIANIYLSASKR 374 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~-~~~~i~vSA~~g 374 (472)
....+..+|++++|+|++++.... ...+.+.+. .+.|+++|+||+|+..... .+.... ..+++++|++++
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 154 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKG 154 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccC
Confidence 455678899999999999862222 222222222 3689999999999984332 122222 367999999999
Q ss_pred ccHHHHHHHHHHH
Q psy9409 375 IGINLLRNTLLDL 387 (472)
Q Consensus 375 ~gi~~L~~~l~~~ 387 (472)
.|++++++.|.+.
T Consensus 155 ~~~~~l~~~l~~~ 167 (168)
T cd04163 155 ENVDELLEEIVKY 167 (168)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999765
No 109
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=8.9e-20 Score=176.15 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=109.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++++..+. ..+.+|+.+.....+.+++ +.+.||||+|...+ ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~-------~~-------- 63 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF-------PA-------- 63 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhh-------hH--------
Confidence 48999999999999999999988764 3445555566666777776 56789999998765 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHH----HHHHh---------CCCCCCEEEEEecCCCCcCcc----ccc----cc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKN---------FPMNIPVIYVWNKIDYSGHQK----NIN----YK 361 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~---------l~~~~piivV~NK~Dl~~~~~----~~~----~~ 361 (472)
....++..+|++|+|||+++..+++... ++... ...+.|+++|+||+|+..... .+. ..
T Consensus 64 ~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~ 143 (247)
T cd04143 64 MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD 143 (247)
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc
Confidence 1223567899999999999986665332 33221 114689999999999975322 111 12
Q ss_pred CCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 362 NNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 362 ~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++++++||++|.|++++++.|.+...
T Consensus 144 ~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 144 ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3467999999999999999999999774
No 110
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=1.2e-19 Score=167.35 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=107.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+.+||+++|.+|||||||++++...++. ...|++..+. ..+..++..+.+|||||...+ ..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~-------~~-------- 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI-------RP-------- 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeE--EEEEECCEEEEEEECCCCHHH-------HH--------
Confidence 4589999999999999999999876653 3334433333 346678889999999997665 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-C----CCCCEEEEEecCCCCcCcc--cccccCC--------CceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P----MNIPVIYVWNKIDYSGHQK--NINYKNN--------IANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~----~~~piivV~NK~Dl~~~~~--~~~~~~~--------~~~i 367 (472)
....+++++|++|+|+|++++.+...+...+..+ . .+.|+++|+||+|+..... .+.+..+ +.++
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEE
Confidence 2344678999999999999876655433333322 1 4689999999999876432 2222222 2356
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|+|+++++++|.+.+.
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999988763
No 111
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.82 E-value=1.1e-19 Score=164.94 Aligned_cols=147 Identities=22% Similarity=0.271 Sum_probs=107.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||++++.+..+. ..+..++.+.....+.+++ .++.+|||||...+ ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~------- 65 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-------TAM------- 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-------hhh-------
Confidence 68999999999999999999988763 3344455445455556655 47789999998876 322
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH---HHH-HHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCC-CceEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF---DKK-IIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNN-IANIYL 369 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~---~~~-il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~-~~~i~v 369 (472)
...+++.+|++++|+|.+++.+.+. |.. +.+.. ..+.|+++|+||+|+..... .+.+..+ .+++++
T Consensus 66 -~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04177 66 -RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYET 144 (168)
T ss_pred -hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEe
Confidence 2235678999999999998755442 222 22222 25789999999999975442 1223344 789999
Q ss_pred EeccCccHHHHHHHHHHHh
Q psy9409 370 SASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~ 388 (472)
||++|.|++++++++.+++
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 112
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=1.3e-19 Score=185.28 Aligned_cols=156 Identities=23% Similarity=0.308 Sum_probs=116.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.|+|+|.||||||||+|+|++... .++++|+||+......+.+.+ ..++|+||||+.+. ...-..++. +.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~-------a~~~~~Lg~-~~ 231 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEG-------ASEGAGLGI-RF 231 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccc-------ccchhhHHH-HH
Confidence 599999999999999999998875 679999999999999988875 56999999999864 211111221 23
Q ss_pred hcccccccEEEEEEeCCC---CCCchHHHHHHHhCC------CCCCEEEEEecCCCCcCcc------cccccCC--CceE
Q psy9409 305 WVELKNSDIIIYVQDARY---DKHTDFDKKIIKNFP------MNIPVIYVWNKIDYSGHQK------NINYKNN--IANI 367 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~---~~~~~~~~~il~~l~------~~~piivV~NK~Dl~~~~~------~~~~~~~--~~~i 367 (472)
...+..+|++++|+|++. ......+..+++.+. ..+|+++|+||+|+..... .+.+..+ .+++
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi 311 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVY 311 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEE
Confidence 346889999999999883 223333333333321 3689999999999975432 1222222 3689
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||+++.|+++|++.|.+.+..
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhh
Confidence 99999999999999999998853
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=8.4e-20 Score=164.05 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=99.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc--ceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDV--AIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~--~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
+|+++|++|||||||+++|.+... ..+.+..+.+. ..+...+..+.+|||||...+ ...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~-------~~~-------- 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKY-------RGL-------- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCCHhh-------HHH--------
Confidence 589999999999999999998753 22223333222 234567889999999998776 222
Q ss_pred hhcccccccEEEEEEeCCCCCCch----HHHHHHHh--C-CCCCCEEEEEecCCCCcCcc--cc------cc--cCCCce
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD----FDKKIIKN--F-PMNIPVIYVWNKIDYSGHQK--NI------NY--KNNIAN 366 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~--l-~~~~piivV~NK~Dl~~~~~--~~------~~--~~~~~~ 366 (472)
...+++.+|++++|+|++++.++. ++..+++. + ..+.|+++|+||+|+..... .+ .. ....++
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEE
Confidence 233678899999999999875443 23333332 1 24789999999999976432 11 11 112358
Q ss_pred EEEEeccCccHHHHHHHHHH
Q psy9409 367 IYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~ 386 (472)
+++||++|.|+++++++|.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 99999999999999999865
No 114
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=1.6e-19 Score=164.08 Aligned_cols=148 Identities=21% Similarity=0.189 Sum_probs=107.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||++++++..+.. ...+..+.+.....+.+++. .+.+|||||...+ ..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~------- 69 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-------RS------- 69 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH-------HH-------
Confidence 3799999999999999999999877643 34455555555556666654 5789999997665 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC----CCCCCEEEEEecCCCCcCcc------cccccCC-Cce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF----PMNIPVIYVWNKIDYSGHQK------NINYKNN-IAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l----~~~~piivV~NK~Dl~~~~~------~~~~~~~-~~~ 366 (472)
....+++.+|++++|+|++++.+++.. ..+++.. ..+.|+++|+||+|+..... .+.+..+ .++
T Consensus 70 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 70 -LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPY 148 (170)
T ss_pred -hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeE
Confidence 133467899999999999987655422 3333322 14679999999999964321 2223344 579
Q ss_pred EEEEeccCccHHHHHHHHHHH
Q psy9409 367 IYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~ 387 (472)
+++||++|.|+.++++.+.+.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999998865
No 115
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=1.2e-19 Score=165.19 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=103.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
||+++|.+|||||||+++|.+..+. ...|++..+. ..+..++..+.+|||||...+ .. ...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~~~-------~~--------~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIGFNV--ETVEYKNLKFTIWDVGGKHKL-------RP--------LWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCceeE--EEEEECCEEEEEEECCCChhc-------ch--------HHH
Confidence 5899999999999999999988653 3333322333 456678889999999998765 22 233
Q ss_pred cccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc-----cccccC------CCceEEE
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK-----NINYKN------NIANIYL 369 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~-----~~~~~~------~~~~i~v 369 (472)
.+++.+|++++|+|++++.+.... ..+++... .+.|+++|+||+|+..... .+.... ...++++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeC
Confidence 467889999999999987655433 33332211 3579999999999965421 111111 1257789
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 116
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=1.4e-19 Score=167.00 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=106.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..+||+++|++|||||||++++....+. ...|++..+. ..+...+..+.+|||||...+ ..
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~T~~~~~--~~~~~~~~~~~l~D~~G~~~~-------~~------- 76 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TTIPTIGFNV--ETVEYKNLKFTMWDVGGQDKL-------RP------- 76 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCCccccce--EEEEECCEEEEEEECCCCHhH-------HH-------
Confidence 45689999999999999999999876653 2334333322 345668889999999998765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-C----CCCCEEEEEecCCCCcCcc--ccccc--------CCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P----MNIPVIYVWNKIDYSGHQK--NINYK--------NNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~----~~~piivV~NK~Dl~~~~~--~~~~~--------~~~~~ 366 (472)
....+++.+|++|+|+|++++.++..+...+..+ . .+.|+++|+||.|+..... .+... ..+.+
T Consensus 77 -~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 77 -LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYI 155 (182)
T ss_pred -HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEE
Confidence 2344788999999999999875555333332222 1 3589999999999865321 11111 12346
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|+++++++|.+.+.
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988764
No 117
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=1.2e-19 Score=188.98 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=118.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
..|+|+|.||||||||+|+|++.... ++++|+||++.....+.+.+.++.++||||+.+. ......++. ..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGlieg-------as~g~gLg~-~f 230 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG-------ASEGKGLGL-DF 230 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccc-------cchhhHHHH-HH
Confidence 57999999999999999999998765 5899999999999999999999999999999764 222222222 24
Q ss_pred hcccccccEEEEEEeCCCCC----Cch---HHH-HHHHhCC-----------CCCCEEEEEecCCCCcCccc---cc---
Q psy9409 305 WVELKNSDIIIYVQDARYDK----HTD---FDK-KIIKNFP-----------MNIPVIYVWNKIDYSGHQKN---IN--- 359 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~----~~~---~~~-~il~~l~-----------~~~piivV~NK~Dl~~~~~~---~~--- 359 (472)
+..+.++|++|+|+|+++.. ... .+. ++..... ..+|+++|+||+|+.+.... +.
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l 310 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH
Confidence 45678899999999998532 222 222 2222211 36899999999999754321 11
Q ss_pred ccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 360 YKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 360 ~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
...+++++++||+++.|+++|+++|.+.+.
T Consensus 311 ~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 311 EARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123678999999999999999999999884
No 118
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.82 E-value=1.5e-19 Score=164.95 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=107.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||++++.+..+. ..++.|+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~-------- 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-------DK-------- 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh-------cc--------
Confidence 58999999999999999999987663 5566677777666677776 46788999998765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
....+++.+|++|+|+|++++.+++. |...+.....+.|+++|+||+|+..... .++
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 12346789999999999999866542 3323333235789999999999965321 122
Q ss_pred ccCCC-ceEEEEeccCccHHHHHHHHH
Q psy9409 360 YKNNI-ANIYLSASKRIGINLLRNTLL 385 (472)
Q Consensus 360 ~~~~~-~~i~vSA~~g~gi~~L~~~l~ 385 (472)
+..+. +++++||++|.|++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 33444 799999999999999998875
No 119
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=1.1e-19 Score=166.37 Aligned_cols=148 Identities=23% Similarity=0.283 Sum_probs=101.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce--------e------cccCceeeeEEEEEEEe-----CCeeEEEEeCCCCCccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI--------V------TSIAGTTRDKITKTIQI-----NKFLFKITDTAGIPDIN 286 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~--------v------~~~~gtt~d~~~~~~~~-----~~~~i~liDTpG~~~~~ 286 (472)
+|+++|++|+|||||+++|++....+ + ....|+|.+.....+.+ .+..+.+|||||+.++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 68999999999999999998743211 0 11224454433333333 4567899999998876
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
... ...+++.+|++|+|+|++++........+......+.|+++|+||+|+..... .+.+.
T Consensus 81 ------~~~--------~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~ 146 (179)
T cd01890 81 ------SYE--------VSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDV 146 (179)
T ss_pred ------HHH--------HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 222 33466789999999999886433322222222235789999999999865321 23333
Q ss_pred CCC---ceEEEEeccCccHHHHHHHHHHHh
Q psy9409 362 NNI---ANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 362 ~~~---~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+. +++++||++|.|++++++.|.+.+
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 147 LGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred hCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 333 489999999999999999998876
No 120
>KOG1423|consensus
Probab=99.82 E-value=3.3e-19 Score=169.59 Aligned_cols=165 Identities=25% Similarity=0.324 Sum_probs=125.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.-+.|+++|.||||||||.|.+++...+.++..+.||+..+.+.+.-+..+++|+||||+..... ...+....--.+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~---~r~~~l~~s~lq 147 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM---HRRHHLMMSVLQ 147 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch---hhhHHHHHHhhh
Confidence 34789999999999999999999999999999999999999999999999999999999986511 112222222244
Q ss_pred hhhcccccccEEEEEEeCCCCCC--chHHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cccc-
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKH--TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NINY- 360 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~--~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~~- 360 (472)
..+..+..||++++|+|++++.. .......++.. ...|-++|.||+|...... .+.+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 56778899999999999996421 11222233322 5789999999999877653 0100
Q ss_pred ------------cCCC----ceEEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 361 ------------KNNI----ANIYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 361 ------------~~~~----~~i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
..++ .+|.+||++|+|+++|.++|..++...
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 1112 389999999999999999999998543
No 121
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=5.9e-20 Score=166.14 Aligned_cols=147 Identities=20% Similarity=0.234 Sum_probs=105.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|++|||||||+++++...+. ..+++++.......+.+++. .+.+|||||..... .. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~--------~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD------TE--------Q 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccc------cc--------h
Confidence 5899999999999999999987653 44555554444455566654 57899999987420 11 1
Q ss_pred hhcccccccEEEEEEeCCCCCCchH---HHHHHHhC---CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l---~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|++++.+++. |...+... ..+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeC
Confidence 2235678999999999999866552 33333333 24799999999999864321 23344568899999
Q ss_pred eccC-ccHHHHHHHHHHHh
Q psy9409 371 ASKR-IGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g-~gi~~L~~~l~~~~ 388 (472)
|++| .|++++|+.+.+.+
T Consensus 145 a~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 145 AAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCchhHHHHHHHHHHHH
Confidence 9999 49999999998765
No 122
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.6e-19 Score=188.83 Aligned_cols=153 Identities=33% Similarity=0.416 Sum_probs=119.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
++|+++|.+|||||||+|+|++...+.+++.|++|+|.....+.+++..+.+|||||+... .+.+.......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-------~~~~~~~~~~~~ 74 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-------DDGFEKQIREQA 74 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-------chhHHHHHHHHH
Confidence 5899999999999999999999998888999999999999999999999999999999864 222322223445
Q ss_pred hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcccccc--cCCC-ceEEEEeccCccHHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINY--KNNI-ANIYLSASKRIGINL 379 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~--~~~~-~~i~vSA~~g~gi~~ 379 (472)
..++..+|++|+|+|++++.+.. ....+++. .+.|+++|+||+|+........+ ..+. +++++||++|.|+++
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHH
Confidence 56788999999999998853322 22333333 47899999999997653332222 2343 489999999999999
Q ss_pred HHHHHHH
Q psy9409 380 LRNTLLD 386 (472)
Q Consensus 380 L~~~l~~ 386 (472)
+++.+.+
T Consensus 153 l~~~I~~ 159 (435)
T PRK00093 153 LLDAILE 159 (435)
T ss_pred HHHHHHh
Confidence 9999987
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.5e-19 Score=162.37 Aligned_cols=148 Identities=22% Similarity=0.210 Sum_probs=109.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
++|+++|++|||||||+++|.+..... ...++.+.+.....+.+.+. .+.+|||||...+ ..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~-------- 71 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RS-------- 71 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HH--------
Confidence 789999999999999999999766532 34455556676677777774 5788999997665 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCch---HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....++..+|++++|+|++++.++. .|...++.. ..+.|+++|+||+|+..... .+.+....+++++||
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 151 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSA 151 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeC
Confidence 1234678899999999999875543 333333333 35689999999999975432 122334567999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
++|.|++++++.|.+.+
T Consensus 152 ~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 152 KESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998753
No 124
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=1.5e-19 Score=166.83 Aligned_cols=149 Identities=16% Similarity=0.175 Sum_probs=104.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe---CCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI---NKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+||+++|++|||||||++++.+.++. ...|..+.+.....+.. .+..+.+|||||...+ ...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~----- 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPL----- 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHH-----
Confidence 479999999999999999999987764 33443333333333332 4578999999997765 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC-CCCCCEEEEEecCCCCcCcc--cc------ccc---CCC
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF-PMNIPVIYVWNKIDYSGHQK--NI------NYK---NNI 364 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l-~~~~piivV~NK~Dl~~~~~--~~------~~~---~~~ 364 (472)
...+++.+|++++|+|++++.+.... ..+.+.. ..+.|+++|+||+|+..... .+ ... .++
T Consensus 69 ---~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 69 ---WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPW 145 (183)
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCce
Confidence 23357889999999999987544322 2233322 25689999999999864321 11 111 124
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++++||++|.|++++++.|.+.+.
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHH
Confidence 6889999999999999999998874
No 125
>PLN03108 Rab family protein; Provisional
Probab=99.82 E-value=2.4e-19 Score=169.23 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=111.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++. .+.+|||||...+ ..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~-------~~------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-------RS------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH-------HH-------
Confidence 3799999999999999999999887653 33445555555556666664 5789999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++++|+|++++.++..... +........|+++|+||+|+..... .+.+..+++++++|
T Consensus 71 -~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 71 -ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred -HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 23446778999999999998866553323 2222335789999999999975432 23344578899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++|+++.+.+.
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999888773
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.81 E-value=1.9e-19 Score=161.71 Aligned_cols=142 Identities=21% Similarity=0.246 Sum_probs=100.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
||+++|++|+|||||+++|....+. ...|....+. ..+...+..+.+|||||...+ .. ...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~-------~~--------~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIPTIGFNV--ETVTYKNLKFQVWDLGGQTSI-------RP--------YWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCCccCcCe--EEEEECCEEEEEEECCCCHHH-------HH--------HHH
Confidence 6899999999999999999877653 2233222222 345567889999999998765 22 233
Q ss_pred cccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc--cccc--------cCCCceEEEE
Q psy9409 306 VELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK--NINY--------KNNIANIYLS 370 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~--~~~~--------~~~~~~i~vS 370 (472)
.++..+|++|+|+|++++.+.. ++..+++... .+.|+++|+||+|+.+... .+.. ..+.+++++|
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS 141 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 4678899999999999864332 2333333221 4689999999999975431 1111 1124699999
Q ss_pred eccCccHHHHHHHHHH
Q psy9409 371 ASKRIGINLLRNTLLD 386 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~ 386 (472)
|++|.|+++++++|.+
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999864
No 127
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=5.9e-20 Score=167.22 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=108.7
Q ss_pred EEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc
Q psy9409 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~ 307 (472)
++|++|||||||+|+|.+.+. .+++.+++|.+.....+.++ +.++.+|||||+.+. ....+.. .......
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~-------~~~~~~~-~~~~~~~ 71 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEG-------ASEGRGL-GNQFLAH 71 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchh-------hhcCCCc-cHHHHHH
Confidence 589999999999999999887 46788999988888888888 899999999998653 1110110 1122345
Q ss_pred cccccEEEEEEeCCCCC------Cch---HH-HHHHHhCC-------CCCCEEEEEecCCCCcCccc-------ccccCC
Q psy9409 308 LKNSDIIIYVQDARYDK------HTD---FD-KKIIKNFP-------MNIPVIYVWNKIDYSGHQKN-------INYKNN 363 (472)
Q Consensus 308 ~~~aD~il~v~D~s~~~------~~~---~~-~~il~~l~-------~~~piivV~NK~Dl~~~~~~-------~~~~~~ 363 (472)
++.+|++++|+|++++. +.. .| ..+..... .+.|+++|+||+|+...... .....+
T Consensus 72 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 151 (176)
T cd01881 72 IRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEG 151 (176)
T ss_pred HhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCC
Confidence 67799999999999873 222 12 22221111 36899999999999765431 112335
Q ss_pred CceEEEEeccCccHHHHHHHHHHH
Q psy9409 364 IANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 364 ~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
.+++++||++|.|++++++.+...
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 679999999999999999998764
No 128
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=1.6e-19 Score=162.11 Aligned_cols=142 Identities=24% Similarity=0.283 Sum_probs=98.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+|+++|++|||||||+|+|.+.++.. ..|+...+. ..+.. .+..+.+|||||.... .. ..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~~~-------~~--------~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIPTVGFNV--EMLQLEKHLSLTVWDVGGQEKM-------RT--------VW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccCccCcce--EEEEeCCceEEEEEECCCCHhH-------HH--------HH
Confidence 58999999999999999999988743 233222222 23333 3568999999997765 22 12
Q ss_pred hcccccccEEEEEEeCCCCCCchH----HHHHHHhCC-CCCCEEEEEecCCCCcCcc--cc---------cccCCCceEE
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFP-MNIPVIYVWNKIDYSGHQK--NI---------NYKNNIANIY 368 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~-~~~piivV~NK~Dl~~~~~--~~---------~~~~~~~~i~ 368 (472)
..++..+|++++|+|++++.+... +..+++... .+.|+++|+||+|+..... .+ ....++++++
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEe
Confidence 335778999999999998754442 233332211 5789999999999964321 11 1112346899
Q ss_pred EEeccCccHHHHHHHHHH
Q psy9409 369 LSASKRIGINLLRNTLLD 386 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~ 386 (472)
+||++|.|++++++.|.+
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 999999999999999864
No 129
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.81 E-value=2.8e-19 Score=163.54 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|+|||||+++|....+... .|....+ ...+.+++..+.+|||||...+ ...
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~t~~~~--~~~~~~~~~~~~l~D~~G~~~~-------~~~------- 75 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT--SPTIGSN--VEEIVYKNIRFLMWDIGGQESL-------RSS------- 75 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc--CCccccc--eEEEEECCeEEEEEECCCCHHH-------HHH-------
Confidence 357999999999999999999998766432 2322222 2456667889999999997765 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc--cccc--------cCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK--NINY--------KNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~--~~~~--------~~~~~~i 367 (472)
...+++.+|++++|+|++++.++. ++..+++... .+.|+++|+||+|+..... .+.+ ..+++++
T Consensus 76 -~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 76 -WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 234678999999999999875443 2333332211 4689999999999865321 1111 1235689
Q ss_pred EEEeccCccHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~ 386 (472)
++||++|.|+++++++|.+
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 130
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.7e-19 Score=162.21 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=105.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe--CCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||+|+|.+..+. ...+.+..+. .....+ .+..+.+|||||...+ ..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-------~~-------- 62 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQD-------RA-------- 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhh-------hH--------
Confidence 48999999999999999999998764 2344332222 222223 4567899999998765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCccc---------ccc-cCC-CceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN---------INY-KNN-IANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~~---------~~~-~~~-~~~i 367 (472)
.....+..+|++++|+|++++.+++ .|...++....+.|+++|+||+|+.+.... +.+ ... .+++
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01893 63 NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV 142 (166)
T ss_pred HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEE
Confidence 2233568899999999999876654 354555544467999999999999764321 111 122 3799
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|++++++.+.+.+.
T Consensus 143 e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EeccccccCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 131
>KOG0098|consensus
Probab=99.81 E-value=1.5e-19 Score=160.18 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=121.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
-+|++++|+.|||||+|+-+++.+.+..+.+ .+...+.....+.+++. ++++|||+|+..+ .
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f---------------r 69 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF---------------R 69 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHH---------------H
Confidence 3799999999999999999999999865443 44566777777788775 5799999998887 3
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
+-+..+++.+-.+|+|||+++.+++..+ .++.+...++..+++++||+||...+. .+++..+..++++|
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETS 149 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETS 149 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhh
Confidence 3366789999999999999999887633 333333347788999999999987653 46677888999999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|+++.|++|.|......+
T Consensus 150 akt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 999999999999887776
No 132
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=3.7e-19 Score=166.31 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=108.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|.+|||||||++++++..+. ..+..++.+.....+.+++ ..+.+|||||...+ ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~-------- 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAM-------- 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHH--------
Confidence 6899999999999999999988764 3444555555555666777 57889999998775 221
Q ss_pred hhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCccc--------c-cccCCCceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQKN--------I-NYKNNIANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~~--------~-~~~~~~~~i~v 369 (472)
...++..+|++++|+|++++.+++.. ..+.+... .+.|+++|+||+|+...... . ....+.+++++
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~ 143 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVET 143 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEe
Confidence 22367889999999999987555433 23333333 57899999999999763221 1 11234678999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 144 Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 144 SAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.81 E-value=2.4e-19 Score=160.31 Aligned_cols=145 Identities=24% Similarity=0.311 Sum_probs=109.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|++|||||||+++|++..+ ......++.+.....+..++ ..+.+|||||.... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~-------- 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------SAM-------- 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH-------HHH--------
Confidence 689999999999999999998874 35556666666666677764 57899999997765 222
Q ss_pred hhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
....++.+|++++|+|.+++.+.. ++..+..... ...|+++|+||+|+..... .+....+.+++++||
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 143 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSA 143 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEecc
Confidence 223567899999999999875544 3333443333 4799999999999986332 122334578999999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|++++++.|.+.
T Consensus 144 ~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 144 KDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999875
No 134
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.81 E-value=3.3e-19 Score=169.19 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=108.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|||||||++++.+..+. ..+..|..+.....+.+++. .+.||||+|...+ ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~-------~~-------- 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY-------DN-------- 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCEEEEEEEEeCCCcHHH-------HH--------
Confidence 68999999999999999999998774 23333333444455666654 5788999998765 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
....+++.+|++|+|||++++.+++ .|...+....++.|+++|+||+|+..... .++
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 1234688999999999999986655 34433333446899999999999965310 233
Q ss_pred ccCCC-ceEEEEeccCcc-HHHHHHHHHHHh
Q psy9409 360 YKNNI-ANIYLSASKRIG-INLLRNTLLDLI 388 (472)
Q Consensus 360 ~~~~~-~~i~vSA~~g~g-i~~L~~~l~~~~ 388 (472)
+..++ +|+++||+++.| ++++|+......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 34564 899999999985 999999988865
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.80 E-value=2.5e-19 Score=162.37 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=103.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++|++..+. .....+..+.........+ ..+.+|||||+..+ ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~-------~~-------- 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY-------DR-------- 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------cc--------
Confidence 58999999999999999999998763 2222333343344444444 46899999998765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCccc------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN------------------INY 360 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~~------------------~~~ 360 (472)
.....++.+|++++|+|++++.++. .|...+.....+.|+++|+||+|+...... +..
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 64 LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 1223557899999999999865544 233333333357999999999999765521 122
Q ss_pred cCCC-ceEEEEeccCccHHHHHHHHHH
Q psy9409 361 KNNI-ANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 361 ~~~~-~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
..+. +++++||++|.|++++++.|.+
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 3344 8999999999999999999875
No 136
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=2.7e-19 Score=166.41 Aligned_cols=148 Identities=24% Similarity=0.236 Sum_probs=106.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCC------CcceecccCceeeeEEEEEEEeC--------------CeeEEEEeCCCCCc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGTTRDKITKTIQIN--------------KFLFKITDTAGIPD 284 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gtt~d~~~~~~~~~--------------~~~i~liDTpG~~~ 284 (472)
++|+++|++|+|||||+++|++. +.......+|+|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 22223456678887766666554 67899999999765
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHH--HHHHhCCCCCCEEEEEecCCCCcCcc------
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK--KIIKNFPMNIPVIYVWNKIDYSGHQK------ 356 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~--~il~~l~~~~piivV~NK~Dl~~~~~------ 356 (472)
+ ..........+|++++|+|+++........ .+... .+.|+++|+||+|+.....
T Consensus 81 ~---------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~ 143 (192)
T cd01889 81 L---------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIE 143 (192)
T ss_pred H---------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHH
Confidence 4 223334567799999999998753222111 12222 3679999999999974321
Q ss_pred cccc----------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 NINY----------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~~----------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+ ..+.+++++||++|.|+++|++.|.+++.
T Consensus 144 ~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 144 KMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1111 23578999999999999999999998874
No 137
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=3.1e-19 Score=158.55 Aligned_cols=145 Identities=28% Similarity=0.312 Sum_probs=106.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|+|||||+|+|.+..... ...+.++.+.....+..+ ...+.+|||||...+ ..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~-------- 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-NYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF-------RS-------- 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-ccCCceeeeeEEEEEEECCEEEEEEEEecCChHHH-------HH--------
Confidence 589999999999999999999988764 234444555555555553 367899999997765 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.....++++|++++|+|++++.+......++..+ ....|+++|+||+|+..... .+....+.+++++||
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 144 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSA 144 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEec
Confidence 2344678899999999999865444333333322 25689999999999962222 223345678999999
Q ss_pred ccCccHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLL 385 (472)
Q Consensus 372 ~~g~gi~~L~~~l~ 385 (472)
++|.|+++++++|.
T Consensus 145 ~~~~~i~~~~~~i~ 158 (159)
T cd00154 145 KTGENVEELFQSLA 158 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999875
No 138
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=165.36 Aligned_cols=157 Identities=24% Similarity=0.312 Sum_probs=117.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+.+.|+|.|.||||||||++++.+.+.. +.++|.||.....+++..++.+++++||||+-+- +-...+.+|..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDR---Pl~ErN~IE~q--- 239 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDR---PLEERNEIERQ--- 239 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCC---ChHHhcHHHHH---
Confidence 4578999999999999999999999986 5999999999999999999999999999999874 11113444443
Q ss_pred hhhcccccccEEEEEEeCCCCCCch------HHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD------FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~------~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vS 370 (472)
.....-.-.++++|++|+|...-.. .+.++...+ ..|+++|+||+|...... .+....+.....+|
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence 2222223478999999998753222 344444433 489999999999885543 12222334467899
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
+..+.+++.+.+.+....
T Consensus 318 ~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 318 ATKGCGLDKLREEVRKTA 335 (346)
T ss_pred eeehhhHHHHHHHHHHHh
Confidence 999999999998888775
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=6.3e-19 Score=159.31 Aligned_cols=146 Identities=23% Similarity=0.250 Sum_probs=105.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---CeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---KFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.|+++|++|+|||||+|+|.+..+.. ...+++|.+.....+... +..+.+|||||+..+ ...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~------- 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNM------- 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHH-------
Confidence 58999999999999999999887654 455677777665666664 678999999997665 221
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccc---------ccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NIN---------YKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~---------~~~~~~~i 367 (472)
....+..+|++++|+|+++..... ....+..+ ..+.|+++|+||+|+..... .+. ....++++
T Consensus 67 -~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 67 -RARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred -HHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEE
Confidence 223457899999999998753222 11122221 25789999999999875421 111 01236799
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++||++|.|+++++++|.+..
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EeecccCCCHHHHHHHHHHhh
Confidence 999999999999999998764
No 140
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.80 E-value=3.4e-19 Score=160.63 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=101.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++++...+.. ..+.+.. .....+.++| ..+.+|||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~~~~----------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESPEGG-RFKKEVLVDGQSHLLLIRDEGGAPDA----------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCCCcc-ceEEEEEECCEEEEEEEEECCCCCch-----------------
Confidence 489999999999999999998876642 2332322 2345677777 45889999997542
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---C--CCCCEEEEEecCCCCcC--cc-------ccccc-CCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---P--MNIPVIYVWNKIDYSGH--QK-------NINYK-NNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~--~~~piivV~NK~Dl~~~--~~-------~~~~~-~~~~~i 367 (472)
.+++.+|++++|+|.+++.+++....++..+ . ...|+++|+||+|+... .. .+.+. .+++++
T Consensus 61 ---~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 137 (158)
T cd04103 61 ---QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY 137 (158)
T ss_pred ---hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEE
Confidence 1346799999999999987766433333322 2 56899999999998532 11 23323 357899
Q ss_pred EEEeccCccHHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~ 387 (472)
+|||++|.||+++|+.+.+.
T Consensus 138 e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 138 ETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEecCCCCCHHHHHHHHHhh
Confidence 99999999999999998764
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=5.3e-19 Score=165.42 Aligned_cols=160 Identities=24% Similarity=0.275 Sum_probs=104.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|.+..+. ++..|++|++.... .++ ++.+|||||+...........+..... ..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDE-IV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHH-HH
Confidence 3579999999999999999999998764 57888998876543 333 689999999754300000001111111 11
Q ss_pred hh-hcccccccEEEEEEeCCCCCCc-h---------HHHHHHHhC-CCCCCEEEEEecCCCCcCcc----cccccCC---
Q psy9409 303 RT-WVELKNSDIIIYVQDARYDKHT-D---------FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK----NINYKNN--- 363 (472)
Q Consensus 303 ~~-~~~~~~aD~il~v~D~s~~~~~-~---------~~~~il~~l-~~~~piivV~NK~Dl~~~~~----~~~~~~~--- 363 (472)
.. ......+|++++|+|.+..... . ...++.+.+ ..+.|+++|+||+|+..... .+.+..+
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 11 1234567899999998753211 1 112222222 25789999999999965431 2222222
Q ss_pred ------CceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 364 ------IANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 364 ------~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++++||++| |+++++++|.+.+.
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 25899999999 99999999998764
No 142
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=4.8e-19 Score=163.68 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=105.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|.+|||||||+|+|.+..+..+. | |.......+.+++.++.+|||||.... ..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~------- 76 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ--P--TQHPTSEELAIGNIKFTTFDLGGHQQA-------RR------- 76 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC--C--ccccceEEEEECCEEEEEEECCCCHHH-------HH-------
Confidence 34589999999999999999999998765332 2 233334556678899999999997765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC-CCCCCEEEEEecCCCCcCcc--ccc------cc-------
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF-PMNIPVIYVWNKIDYSGHQK--NIN------YK------- 361 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l-~~~~piivV~NK~Dl~~~~~--~~~------~~------- 361 (472)
....++..+|++++|+|++++.+.... ..+++.. ..+.|+++|+||+|+..... .+. +.
T Consensus 77 -~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 77 -LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKV 155 (184)
T ss_pred -HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccccc
Confidence 123467899999999999987544322 2232211 15789999999999864321 111 10
Q ss_pred --CCCceEEEEeccCccHHHHHHHHHHH
Q psy9409 362 --NNIANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 362 --~~~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
....++++||++|.|+++++++|.+.
T Consensus 156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCceeEEEEeecccCCChHHHHHHHHhh
Confidence 12348999999999999999999765
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=5.5e-19 Score=163.63 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=104.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
...+|+++|++|||||||+++|.+..+..+ .| |.......+.+++.++.+|||||...+ ..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~--~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~~-------- 78 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH--VP--TLHPTSEELTIGNIKFKTFDLGGHEQA-------RR-------- 78 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc--CC--ccCcceEEEEECCEEEEEEECCCCHHH-------HH--------
Confidence 458999999999999999999998776422 22 222334566778899999999997654 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc--cccc---------------
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK--NINY--------------- 360 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~--~~~~--------------- 360 (472)
....+++.+|++++|+|+++..++. ++..+++... .+.|+++|+||+|+..... .+.+
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc
Confidence 2334678899999999999865443 3333333222 4689999999999964322 1111
Q ss_pred ----cCCCceEEEEeccCccHHHHHHHHHHH
Q psy9409 361 ----KNNIANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 361 ----~~~~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
....+++++||++|.|+++++++|.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 012458999999999999999999875
No 144
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.80 E-value=5.8e-19 Score=158.26 Aligned_cols=142 Identities=19% Similarity=0.229 Sum_probs=102.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
||+++|.+|||||||++++++.......+..+.+ ...+.+++..+.+|||||...+ ... ..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~-------~~~--------~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFN----VETVEYKNVSFTVWDVGGQDKI-------RPL--------WK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcc----eEEEEECCEEEEEEECCCChhh-------HHH--------HH
Confidence 6899999999999999999998753322222322 2445667889999999998765 222 23
Q ss_pred cccccccEEEEEEeCCCCCCchH----HHHHHHhC-CCCCCEEEEEecCCCCcCcc------ccc----ccCCCceEEEE
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDF----DKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NIN----YKNNIANIYLS 370 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~----~~~~~~~i~vS 370 (472)
..+..+|++++|+|++++.+... +..+.+.. ..+.|+++|+||+|+..... .+. .....+++++|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEee
Confidence 36678999999999998754443 33333322 25789999999999976441 111 12345799999
Q ss_pred eccCccHHHHHHHHHH
Q psy9409 371 ASKRIGINLLRNTLLD 386 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~ 386 (472)
|++|.|++++++.|..
T Consensus 142 a~~~~gv~~~~~~l~~ 157 (158)
T cd00878 142 AVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCCHHHHHHHHhh
Confidence 9999999999999865
No 145
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=1e-18 Score=159.38 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=103.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.||+++|++|||||||++++.+..+. ..+..|..+.....+.+++. .+.+|||||...+ ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY-------DR-------- 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhh-------hh--------
Confidence 58999999999999999999998764 22333433433445556554 6789999998765 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------ccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NIN 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~~ 359 (472)
.....+..+|++++|+|+++..+++ .|...+.....+.|+++|+||+|+.+... .+.
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 1223568899999999999875543 23333333335789999999999865321 011
Q ss_pred ccCC-CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 360 YKNN-IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 360 ~~~~-~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+..+ .+++++||++|.|++++++.|.+.+
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 1222 4799999999999999999998653
No 146
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=1.1e-18 Score=162.87 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=100.9
Q ss_pred CCEEEEEecCCCchhHHHH-hhhCCCcc---eecccCceee--eEEEEE--------EEeCC--eeEEEEeCCCCCcccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFN-SLVGSDVA---IVTSIAGTTR--DKITKT--------IQINK--FLFKITDTAGIPDINS 287 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin-~L~~~~~~---~v~~~~gtt~--d~~~~~--------~~~~~--~~i~liDTpG~~~~~~ 287 (472)
.+||+++|.+|||||||++ ++.+..+. ....+..|.. +..... ..++| ..+.+|||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3799999999999999996 55544321 0122222221 221111 13344 57899999997643
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcC---------
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGH--------- 354 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~--------- 354 (472)
. ...+++.+|++++|+|++++.+++. |...++....+.|+++|+||+|+...
T Consensus 80 -------------~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 -------------D--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred -------------h--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcc
Confidence 1 2236889999999999999877652 43333333357899999999998641
Q ss_pred ----------cc-------cccccCCCceEEEEeccCccHHHHHHHHHHH
Q psy9409 355 ----------QK-------NINYKNNIANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 355 ----------~~-------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
.. .+++..+++++++||++|.|++++|+.+.+.
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 11 2444567899999999999999999998764
No 147
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=9.6e-19 Score=163.69 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=105.7
Q ss_pred EecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc
Q psy9409 230 IGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307 (472)
Q Consensus 230 vG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~ 307 (472)
+|.+|||||||+++++...+.. ...|....+.....+.+++ ..+.+|||||...+ .. ....+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-------~~--------l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-------GG--------LRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-------hh--------hhHHH
Confidence 5999999999999999776532 2233333455445555544 57899999998776 21 23347
Q ss_pred cccccEEEEEEeCCCCCCch---HHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccCccHHH
Q psy9409 308 LKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 308 ~~~aD~il~v~D~s~~~~~~---~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
++.+|++|+|||+++..++. .|...+.....+.|+++|+||+|+..... .+.+..+++++++||++|.|+++
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEK 144 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 88999999999999986665 33333333336799999999999864321 23344578899999999999999
Q ss_pred HHHHHHHHhh
Q psy9409 380 LRNTLLDLIE 389 (472)
Q Consensus 380 L~~~l~~~~~ 389 (472)
+|++|.+.+.
T Consensus 145 ~F~~l~~~i~ 154 (200)
T smart00176 145 PFLWLARKLI 154 (200)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 148
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=9.9e-19 Score=159.17 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=103.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+.++|+++|++|||||||+++|.+..+....+..|.+ ...+.+++..+.+|||||...+ ...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~----~~~i~~~~~~~~~~D~~G~~~~-------~~~------- 74 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFN----IKTVQSDGFKLNVWDIGGQRAI-------RPY------- 74 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcc----eEEEEECCEEEEEEECCCCHHH-------HHH-------
Confidence 4689999999999999999999998764433333322 2355667889999999997665 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc--cccccC--------CCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK--NINYKN--------NIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~--~~~~~~--------~~~~i 367 (472)
...+++.+|++++|+|+++..... ++..+++.. ..+.|+++++||+|+..... .+.+.. ..+++
T Consensus 75 -~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 75 -WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred -HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEE
Confidence 233568899999999999764333 223333221 24689999999999976432 111111 12478
Q ss_pred EEEeccCccHHHHHHHHHH
Q psy9409 368 YLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~ 386 (472)
++||++|.|+++++++|.+
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 9999999999999999875
No 149
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1e-18 Score=160.32 Aligned_cols=149 Identities=23% Similarity=0.234 Sum_probs=109.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.||+++|++|||||||++++.+..+. ....+++.+.....+.+++ +.+.+|||||..++ ...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~------- 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY-------SIL------- 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhh-------HHH-------
Confidence 58999999999999999999987753 3344444444445555655 45789999998765 211
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...++..+|++++|+|.++..+++ ++..+++... .+.|+++|+||+|+..... .+.+..+.+++++|
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (180)
T cd04137 66 -PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESS 144 (180)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 223566899999999999875544 3444544432 5689999999999874321 12334567899999
Q ss_pred eccCccHHHHHHHHHHHhhc
Q psy9409 371 ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~~ 390 (472)
|++|.|+.++++++.+.+..
T Consensus 145 a~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 145 ARENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998853
No 150
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=7.9e-19 Score=159.13 Aligned_cols=142 Identities=17% Similarity=0.244 Sum_probs=101.9
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhc
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~ 306 (472)
|+++|++|||||||+++|.+..+.. ...|....+ ...+...+..+.+|||||...+ .. ....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~-------~~--------~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SVVPTTGFN--SVAIPTQDAIMELLEIGGSQNL-------RK--------YWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-cccccCCcc--eEEEeeCCeEEEEEECCCCcch-------hH--------HHHH
Confidence 7999999999999999999876532 223332332 2345667789999999998766 22 2334
Q ss_pred ccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-----------cccccCCCceEEEEec
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-----------NINYKNNIANIYLSAS 372 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-----------~~~~~~~~~~i~vSA~ 372 (472)
+++.+|++++|+|.+++.++.....++..+ ..+.|+++|+||+|+..... .+.+..+++++++||+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~ 143 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLD 143 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeec
Confidence 688999999999999875544333333322 26799999999999865432 1223345678899988
Q ss_pred c------CccHHHHHHHHHH
Q psy9409 373 K------RIGINLLRNTLLD 386 (472)
Q Consensus 373 ~------g~gi~~L~~~l~~ 386 (472)
+ ++|++++|+.+..
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999998753
No 151
>KOG0080|consensus
Probab=99.79 E-value=4.3e-19 Score=153.27 Aligned_cols=148 Identities=25% Similarity=0.196 Sum_probs=119.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCc-eeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-TTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-tt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+||.++|.+|||||||+-++..+.+-. ..|. ...|+....+.++|. ++.+|||+|++.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~--~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErF--------------- 73 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDD--LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERF--------------- 73 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCc--cCCceeeeeEEEEEEEEcCceEEEEEEeccchHhh---------------
Confidence 3799999999999999999999988742 2232 567888888888775 6889999999887
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-----CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-----MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-----~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+..+++.|..+|+|||++..+++..+..+++++. ++.-.++|+||+|....+. .+++..++-+++
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE 153 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIE 153 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEE
Confidence 2336679999999999999999888775555555542 4555789999999875432 355667788999
Q ss_pred EEeccCccHHHHHHHHHHHh
Q psy9409 369 LSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~ 388 (472)
+||++.+|++..|+.+...+
T Consensus 154 ~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 154 CSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred cchhhhccHHHHHHHHHHHH
Confidence 99999999999999998887
No 152
>KOG0087|consensus
Probab=99.79 E-value=7.4e-19 Score=159.19 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=125.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|.++||||-|+.++..+++.. ...++...++....+.+++. +.+||||+|+..+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~-~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy-------------- 76 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY-------------- 76 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCc-ccccceeEEEEeeceeecCcEEEEeeecccchhhh--------------
Confidence 345899999999999999999999999976 66677788888888888886 5689999999987
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+..+++.|-.+++|||++...+++....|++++ ..++++++|+||+||...+. .+++..+..+++
T Consensus 77 -rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~E 155 (222)
T KOG0087|consen 77 -RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLE 155 (222)
T ss_pred -ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEE
Confidence 233667899999999999999987777444444444 47889999999999987432 356667788999
Q ss_pred EEeccCccHHHHHHHHHHHh
Q psy9409 369 LSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~ 388 (472)
+||..+.|+++.|+.+...+
T Consensus 156 tSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 156 TSALDATNVEKAFERVLTEI 175 (222)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999999999998887776
No 153
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.79 E-value=1.4e-18 Score=156.26 Aligned_cols=147 Identities=27% Similarity=0.327 Sum_probs=112.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
||+++|++|||||||+++|.+..+.. ...+....+.....+..++. .+.+|||+|...+ ...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~-------- 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF-------DSL-------- 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG-------HHH--------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccc-------ccc--------
Confidence 79999999999999999999887642 33444447777777888765 5899999997765 221
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHH----hCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEec
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIK----NFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSAS 372 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~----~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA~ 372 (472)
....+.++|++++|+|.+++.++.....++. ......|+++|+||.|+..... .+.+..+.+++++||+
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 144 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAK 144 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECC
Confidence 2236788999999999999866653333333 3334689999999999987332 2444567899999999
Q ss_pred cCccHHHHHHHHHHHh
Q psy9409 373 KRIGINLLRNTLLDLI 388 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~ 388 (472)
++.|+.++|..+.+.+
T Consensus 145 ~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 145 NGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998875
No 154
>KOG0079|consensus
Probab=99.78 E-value=3.5e-19 Score=151.77 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=122.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
++.+|+|.||||||||+-++....++. +.+..+..|....+++++|. ++.+|||+|.+.+ ..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF---------------rt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF---------------RT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccccc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH---------------HH
Confidence 577899999999999999999998864 66667778999999999875 6789999998877 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEec
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSAS 372 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA~ 372 (472)
.+..+++..+++++|||+++.+++.....+++++ ....|-++|+||.|...... .++...++.+|++|||
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK 152 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK 152 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhh
Confidence 3556889999999999999998887444444443 25788999999999987653 3556678899999999
Q ss_pred cCccHHHHHHHHHHHh
Q psy9409 373 KRIGINLLRNTLLDLI 388 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~ 388 (472)
...|++..|..|.+++
T Consensus 153 e~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 153 ENENVEAMFHCITKQV 168 (198)
T ss_pred hcccchHHHHHHHHHH
Confidence 9999999999999887
No 155
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.78 E-value=2.5e-18 Score=156.31 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=101.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|++|||||||+++|.+.......+..+. ....+..++..+.+|||||...+ .. ...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~~~i~D~~G~~~~-------~~--------~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGF----TPTKLRLDKYEVCIFDLGGGANF-------RG--------IWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccc----eEEEEEECCEEEEEEECCCcHHH-------HH--------HHH
Confidence 489999999999999999998732222222222 23466678899999999997655 22 234
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhC----C-CCCCEEEEEecCCCCcCcc-----------cccccC--CCceE
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P-MNIPVIYVWNKIDYSGHQK-----------NINYKN--NIANI 367 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~-~~~piivV~NK~Dl~~~~~-----------~~~~~~--~~~~i 367 (472)
.+++.+|++++|+|++++.++.....++..+ . .+.|+++|+||+|+..... .+.+.. .++++
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEE
Confidence 5778999999999999876555333333322 1 4789999999999976542 111111 24678
Q ss_pred EEEeccC------ccHHHHHHHHHH
Q psy9409 368 YLSASKR------IGINLLRNTLLD 386 (472)
Q Consensus 368 ~vSA~~g------~gi~~L~~~l~~ 386 (472)
++||++| .|+++.++||.+
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 8999998 899999999864
No 156
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=2.5e-18 Score=152.89 Aligned_cols=142 Identities=19% Similarity=0.294 Sum_probs=101.8
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhc
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~ 306 (472)
|+++|++|||||||+|+|.+.++.. ...|++..+.. .+..++..+.+|||||...+ ... ...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~-------~~~--------~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRF-------RSM--------WER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCCCCcceE--EEEECCEEEEEEECCCCHhH-------HHH--------HHH
Confidence 7999999999999999999987753 44454444432 34566788999999998765 222 233
Q ss_pred ccccccEEEEEEeCCCCCCchH----HHHHHHhC-CCCCCEEEEEecCCCCcCcc--cc------c--ccCCCceEEEEe
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDF----DKKIIKNF-PMNIPVIYVWNKIDYSGHQK--NI------N--YKNNIANIYLSA 371 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~----~~~il~~l-~~~~piivV~NK~Dl~~~~~--~~------~--~~~~~~~i~vSA 371 (472)
++..+|++++|+|+++...... +..+++.. ..+.|+++|+||+|+..... .+ . .....+++++|+
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEe
Confidence 5688999999999998644432 22332211 15789999999999876532 11 1 112357899999
Q ss_pred ccCccHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLD 386 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~ 386 (472)
++|.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999865
No 157
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.78 E-value=4.6e-18 Score=150.36 Aligned_cols=151 Identities=32% Similarity=0.388 Sum_probs=105.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|.+|+|||||+|+|.+.. ......++++.+.....+..++ ..+.+|||||..+. .... .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~-~~~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-------RAIR-RLYYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-------hHHH-HHHHh
Confidence 689999999999999999999988 4567788999998888788888 78999999997665 2222 11122
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCcc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIG 376 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~g 376 (472)
.+...+...|+.++|.|.... ...+...+......+.|+++|+||+|+..... .+......+++++||++|.|
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEI-LEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhH-hHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCC
Confidence 233334444555444444432 11233333333333789999999999976421 12333456799999999999
Q ss_pred HHHHHHHHH
Q psy9409 377 INLLRNTLL 385 (472)
Q Consensus 377 i~~L~~~l~ 385 (472)
+.+++++|.
T Consensus 152 v~~~~~~l~ 160 (161)
T TIGR00231 152 IDSAFKIVE 160 (161)
T ss_pred HHHHHHHhh
Confidence 999999874
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=2.3e-18 Score=158.44 Aligned_cols=148 Identities=23% Similarity=0.226 Sum_probs=108.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceec---------------ccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVT---------------SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~---------------~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 290 (472)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4899999999999999999987654311 23456666666677778889999999998765
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc----------ccc
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK----------NIN 359 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~----------~~~ 359 (472)
.. ....+++.+|++++|+|++.+.... ...++..+ ..+.|+++|+||+|+..... .+.
T Consensus 76 --~~--------~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 76 --SS--------EVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred --HH--------HHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 22 2334567899999999998764322 22222222 25799999999999986321 011
Q ss_pred c-------------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 360 Y-------------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 360 ~-------------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
. ....+++++||++|.|++++++.|.+.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1 13567999999999999999999998763
No 159
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=1.9e-18 Score=185.78 Aligned_cols=148 Identities=24% Similarity=0.358 Sum_probs=112.6
Q ss_pred ecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccccc
Q psy9409 231 GQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN 310 (472)
Q Consensus 231 G~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~ 310 (472)
|+||||||||+|+|.+... .++++||+|.+.....+.+++.++.+|||||+.+. ......+.+.+.......
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~-------~~~s~~e~v~~~~l~~~~ 72 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL-------TTFSLEEEVARDYLLNEK 72 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc-------CccchHHHHHHHHHhhcC
Confidence 8999999999999999876 57999999999999999999999999999999876 111111112222223457
Q ss_pred ccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHHHHHHHH
Q psy9409 311 SDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGINLLRNTL 384 (472)
Q Consensus 311 aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~~L~~~l 384 (472)
+|++++|+|+++.+.. .....+..+.+.|+++|+||+|+.+... .+.+..+.+++++||++|.|++++++.+
T Consensus 73 aDvvI~VvDat~ler~--l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 73 PDLVVNVVDASNLERN--LYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred CCEEEEEecCCcchhh--HHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999875322 1212222246799999999999865432 3445668899999999999999999999
Q ss_pred HHHh
Q psy9409 385 LDLI 388 (472)
Q Consensus 385 ~~~~ 388 (472)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8865
No 160
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=1.6e-18 Score=152.80 Aligned_cols=133 Identities=22% Similarity=0.241 Sum_probs=90.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
||+++|++|||||||+|+|.+..+.. .+ | . ...+.+ .+|||||.... .... .....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~---~~-t-~-----~~~~~~---~~iDt~G~~~~-------~~~~----~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY---KK-T-Q-----AVEYND---GAIDTPGEYVE-------NRRL----YSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc---cc-c-e-----eEEEcC---eeecCchhhhh-------hHHH----HHHHH
Confidence 79999999999999999999887531 11 1 1 122222 68999997421 1111 11222
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCC-ceEEEEeccCccHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNI-ANIYLSASKRIGIN 378 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~-~~i~vSA~~g~gi~ 378 (472)
..++++|++++|+|++++.++.. ..+.... ..|+++|+||+|+.+... .+.+..+. +++++||++|.|++
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~-~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFP-PGFASIF--VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCC-hhHHHhc--cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 35789999999999998865432 2233322 349999999999965322 12223343 79999999999999
Q ss_pred HHHHHHH
Q psy9409 379 LLRNTLL 385 (472)
Q Consensus 379 ~L~~~l~ 385 (472)
++++++.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
No 161
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=6.2e-18 Score=162.01 Aligned_cols=155 Identities=23% Similarity=0.343 Sum_probs=113.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|+||+|||||+|+|.+.... +.+++++|.+.....+.+++.++.+|||||+.+. ....... .....
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~-------~~~~~~~-~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG-------AADGKGR-GRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccc-------cccchhH-HHHHH
Confidence 6899999999999999999998753 5889999999888888899999999999998764 1100010 12234
Q ss_pred cccccccEEEEEEeCCCCCC-ch--------------------------------------------HHHHHHHhC----
Q psy9409 306 VELKNSDIIIYVQDARYDKH-TD--------------------------------------------FDKKIIKNF---- 336 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~-~~--------------------------------------------~~~~il~~l---- 336 (472)
..++++|++++|+|++++.. .. ....++++.
T Consensus 73 ~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~ 152 (233)
T cd01896 73 AVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHN 152 (233)
T ss_pred HhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeee
Confidence 57889999999999886531 11 112222221
Q ss_pred ------------------C---CCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 337 ------------------P---MNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 337 ------------------~---~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
. ...|+++|+||+|+.............+++++||++|.|++++++.|.+.+.
T Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 153 ADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1 2368999999999976543111112346899999999999999999998774
No 162
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.76 E-value=6.2e-18 Score=156.54 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=105.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.||+++|++|+|||||+++|....+.. ....+..+.....+.+++. .+.+|||||...+ ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~------- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY-------ERL------- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhc-------ccc-------
Confidence 489999999999999999998665532 2223344444445566654 4789999998765 111
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-----------------ccccc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------------NINYK 361 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-----------------~~~~~ 361 (472)
....+..+|++++++|.++..+++ .|...+.....+.|+++|+||+|+..... .+.+.
T Consensus 66 -~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 66 -RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred -chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 112567899999999999876654 24444433335799999999999854211 12233
Q ss_pred CC-CceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 362 NN-IANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 362 ~~-~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+ .+++++||++|.|++++++.+.+.+.
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 44 47999999999999999999998773
No 163
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=4e-18 Score=158.80 Aligned_cols=139 Identities=21% Similarity=0.217 Sum_probs=98.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceec---------------ccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVT---------------SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~---------------~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 290 (472)
+|+++|.+|+|||||+|+|++....... ...|+|.+.....+..++..+.+|||||+.++
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~----- 78 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF----- 78 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH-----
Confidence 7999999999999999999963211111 12456666666677788899999999998876
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----c---c-c-
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----N---I-N- 359 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~---~-~- 359 (472)
... ...+++.+|++++|+|+++. .......++..+ ..+.|+++|+||+|+..... . + .
T Consensus 79 --~~~--------~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 79 --GGE--------VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred --HHH--------HHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 222 33467889999999999875 233333333322 25789999999999965432 0 1 0
Q ss_pred -----ccCCCceEEEEeccCccHHHH
Q psy9409 360 -----YKNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 360 -----~~~~~~~i~vSA~~g~gi~~L 380 (472)
+..+++++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCccCEEEeehhcccccccc
Confidence 123678999999999887544
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=6.4e-18 Score=152.33 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=95.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|++|+|||||+|+|.+.... . ..|. .+.+.+. .+|||||.... ...... ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~-----~v~~~~~--~~iDtpG~~~~-------~~~~~~----~~~ 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQ-----AVEFNDK--GDIDTPGEYFS-------HPRWYH----ALI 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccce-----EEEECCC--CcccCCccccC-------CHHHHH----HHH
Confidence 6999999999999999999886531 1 1111 1222222 26999998654 222211 123
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc----cccccCC--CceEEEEeccCccHHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK----NINYKNN--IANIYLSASKRIGINL 379 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~----~~~~~~~--~~~i~vSA~~g~gi~~ 379 (472)
..++.+|++++|+|+++..+... ..+. .+..+.|+++|+||+|+..... .+.+..+ .|++++||++|.|+++
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~-~~~~-~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLP-AGLL-DIGVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccC-HHHH-hccCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence 34789999999999998754321 1122 2235679999999999865432 1111233 4899999999999999
Q ss_pred HHHHHHHHhhc
Q psy9409 380 LRNTLLDLIEK 390 (472)
Q Consensus 380 L~~~l~~~~~~ 390 (472)
+++.+.+.+..
T Consensus 138 l~~~l~~~~~~ 148 (158)
T PRK15467 138 LVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHhchh
Confidence 99999998753
No 165
>KOG0093|consensus
Probab=99.76 E-value=5.2e-18 Score=144.52 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=118.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+|+.++|...+|||||+-+.++..+.+ .-+.....|+...++--+ ..++.+|||+|++.+ ..
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~-afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry---------------rt 85 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY---------------RT 85 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcccccc-ceeeeeeeeEEEeEeeecccEEEEEEEecccchhh---------------hH
Confidence 699999999999999999999998854 333444556555544333 357899999998876 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.+-.+++.++++|+++|.++.+++...+.+...+ ..+.|+|+|+||||+.+.+. .+.+..|..++++||
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSa 165 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSA 165 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcc
Confidence 3556889999999999999987776555544443 26899999999999987664 356677899999999
Q ss_pred ccCccHHHHHHHHHHHhhc
Q psy9409 372 SKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~~ 390 (472)
|.+.|++.+|+.+...+..
T Consensus 166 K~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICD 184 (193)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999998854
No 166
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=1.4e-17 Score=147.31 Aligned_cols=151 Identities=30% Similarity=0.383 Sum_probs=113.0
Q ss_pred EEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc
Q psy9409 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~ 307 (472)
++|++|+|||||+|+|.+......+..+++|.+......... +..+.+|||||+... ....... .......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~-------~~~~~~~-~~~~~~~ 72 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEA-------GGLGRER-EELARRV 72 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcc-------ccchhhH-HHHHHHH
Confidence 589999999999999999887766788888888877777765 778999999998876 2211110 1234456
Q ss_pred cccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCccc----------ccccCCCceEEEEeccCccH
Q psy9409 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN----------INYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 308 ~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~----------~~~~~~~~~i~vSA~~g~gi 377 (472)
+..+|++++|+|++..........+......+.|+++|+||+|+...... .......+++++||+++.|+
T Consensus 73 ~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 73 LERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 78899999999999875443322122222468999999999999875431 11234578999999999999
Q ss_pred HHHHHHHHHH
Q psy9409 378 NLLRNTLLDL 387 (472)
Q Consensus 378 ~~L~~~l~~~ 387 (472)
+++++++.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 167
>KOG0095|consensus
Probab=99.75 E-value=5.6e-18 Score=144.55 Aligned_cols=148 Identities=22% Similarity=0.216 Sum_probs=117.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|..|||||+|+.++...-+.. +.-.....|+.-.+++++|. ++.+|||+|+..+ ..
T Consensus 8 fkivlvgnagvgktclvrrftqglfpp-gqgatigvdfmiktvev~gekiklqiwdtagqerf---------------rs 71 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF---------------RS 71 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCC-CCCceeeeeEEEEEEEECCeEEEEEEeeccchHHH---------------HH
Confidence 799999999999999999999887754 55556678888888888774 6789999998887 33
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
.+..+++.|+++++|+|++...+++-+.+++.++ ...+--|+|+||+|+.+..+ .+.+....-++++||
T Consensus 72 itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsa 151 (213)
T KOG0095|consen 72 ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSA 151 (213)
T ss_pred HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcc
Confidence 4777999999999999999987777444444443 34555789999999987654 233333445889999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
+...|++.||..+...+
T Consensus 152 kea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 152 KEADNVEKLFLDLACRL 168 (213)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 99999999999987766
No 168
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=1.2e-17 Score=142.27 Aligned_cols=115 Identities=40% Similarity=0.583 Sum_probs=91.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHH-HHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE-KIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e-~~~i~~~ 304 (472)
+|+++|.+|+|||||+|+|++.+...+++.+++|++.....+.+++..+.++||||+.+. ..... ...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~-------~~~~~~~~~~~~~ 73 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDG-------ESQDNDGKEIRKF 73 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSS-------SHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCccc-------chhhHHHHHHHHH
Confidence 689999999999999999999877788999999999977788889999999999999875 22111 1134456
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEec
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK 348 (472)
...+..+|++++|+|++.+ .......+++.+....|+++|+||
T Consensus 74 ~~~~~~~d~ii~vv~~~~~-~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 74 LEQISKSDLIIYVVDASNP-ITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp HHHHCTESEEEEEEETTSH-SHHHHHHHHHHHHTTSEEEEEEES
T ss_pred HHHHHHCCEEEEEEECCCC-CCHHHHHHHHHHhcCCCEEEEEcC
Confidence 6677899999999997773 233445555555578999999998
No 169
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=159.19 Aligned_cols=186 Identities=25% Similarity=0.364 Sum_probs=135.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhHH----hhhC-CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEE
Q psy9409 193 NKNDFFNELIKIKKKLLKIIQQGKKRA----LIRN-GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTI 267 (472)
Q Consensus 193 ~~~~l~~~l~~l~~~l~~~~~~~~~~~----~~~~-~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~ 267 (472)
....++.++++++++++...+....+. ..++ ..+|+++|.|+||||||+|+|++.+.. +.++|+||...+...+
T Consensus 27 hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l 105 (365)
T COG1163 27 HIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGML 105 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceE
Confidence 345678888999988877522111110 0112 248999999999999999999998875 5999999999999999
Q ss_pred EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC-c--------------------
Q psy9409 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH-T-------------------- 326 (472)
Q Consensus 268 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~-~-------------------- 326 (472)
.++|..++++|+||+.+..+..... -+......++||++++|+|+..... .
T Consensus 106 ~Y~ga~IQild~Pgii~gas~g~gr--------G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~ 177 (365)
T COG1163 106 EYKGAQIQLLDLPGIIEGASSGRGR--------GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPD 177 (365)
T ss_pred eecCceEEEEcCcccccCcccCCCC--------cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCc
Confidence 9999999999999998762211100 1235567899999999999985432 0
Q ss_pred ------------------------hHHHHHHHhC-------------------------CCCCCEEEEEecCCCCcCcc-
Q psy9409 327 ------------------------DFDKKIIKNF-------------------------PMNIPVIYVWNKIDYSGHQK- 356 (472)
Q Consensus 327 ------------------------~~~~~il~~l-------------------------~~~~piivV~NK~Dl~~~~~- 356 (472)
+....++++. ...+|.+.|.||+|+...+.
T Consensus 178 V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~ 257 (365)
T COG1163 178 VTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEEL 257 (365)
T ss_pred eEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHH
Confidence 0122222221 13579999999999988443
Q ss_pred -cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 -NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 -~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+. .+++++||+++.|+++|.+.|.+.+.
T Consensus 258 ~~l~~~--~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 258 ERLARK--PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHHHhc--cceEEEecccCCCHHHHHHHHHHhhC
Confidence 22222 37899999999999999999999984
No 170
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=7.1e-18 Score=164.78 Aligned_cols=222 Identities=18% Similarity=0.157 Sum_probs=142.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc-----ceec------------ccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDV-----AIVT------------SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~-----~~v~------------~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|+++|++|+|||||+|+|+.... ..++ ...|+|.+.....+.+++..+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 589999999999999999974211 1111 24478888888899999999999999998776
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cccccC
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYKN 362 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~~ 362 (472)
. ......++.+|++++|+|++... ......+++.+ ..++|+++|+||+|+..... .+.+..
T Consensus 78 ----~--------~~~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l 144 (270)
T cd01886 78 ----T--------IEVERSLRVLDGAVAVFDAVAGV-EPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred ----H--------HHHHHHHHHcCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHh
Confidence 2 23445778899999999998763 22233333333 25789999999999976432 222222
Q ss_pred C---C-ceEEEEeccCccHHHHHHHHHHHhh-ccCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCc
Q psy9409 363 N---I-ANIYLSASKRIGINLLRNTLLDLIE-KTQTIE--SSPYLARERHIHSLNEANYYLSCAIKIINQS--EKNFEKN 433 (472)
Q Consensus 363 ~---~-~~i~vSA~~g~gi~~L~~~l~~~~~-~~~~~~--~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~ 433 (472)
+ . ..+++|+.. ++..+.+.+..... +..... ......+....+..+++.+.|-+.+...+.. ++||+..
T Consensus 145 ~~~~~~~~~Pisa~~--~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~ 222 (270)
T cd01886 145 GANPVPLQLPIGEED--DFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGE 222 (270)
T ss_pred CCCceEEEeccccCC--CceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCC
Confidence 2 1 267888864 34555555544442 211101 0123344555566666666666655544332 5777765
Q ss_pred hhHHHHHHHHHHHH-----------HhchhCCCCchhHHHHHhh
Q psy9409 434 LELIAEDLRFCHEK-----------LSSIIGKSTTNDLLDNIFS 466 (472)
Q Consensus 434 ~el~~~el~~a~~~-----------l~~i~g~~~~e~iLd~iF~ 466 (472)
++..+||..+++. .|--+..+..+.+||.|-.
T Consensus 223 -~~~~~el~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~ 265 (270)
T cd01886 223 -EITEEEIKAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVD 265 (270)
T ss_pred -CCCHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHH
Confidence 7777788777775 2222234677888887643
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=4.5e-17 Score=151.37 Aligned_cols=159 Identities=24% Similarity=0.270 Sum_probs=107.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH-
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI- 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~- 299 (472)
+..++|+++|++|||||||+|+|++.+ ...+++.+++|++..... + +.++.||||||+.... .+....+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~----~~~~~~~~~~ 94 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAK----VSKEEKEKWQ 94 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcC----CCchHHHHHH
Confidence 355799999999999999999999975 556677888887764433 2 4689999999976430 111111111
Q ss_pred -hHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------ccccc---CCCceE
Q psy9409 300 -GIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYK---NNIANI 367 (472)
Q Consensus 300 -~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~---~~~~~i 367 (472)
...........++++++|+|.+.+.... .+..+++. .+.|+++|+||+|+..... .+... ...+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 0112223334567899999988753322 22233332 4689999999999976432 11111 146899
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 172
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=2.9e-17 Score=150.53 Aligned_cols=148 Identities=21% Similarity=0.280 Sum_probs=109.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+...+|+++|..|+||||++++|...+... ..| |.......+.+++..+.+||.+|.... ..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~--~~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~-------~~------- 73 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE--TIP--TIGFNIEEIKYKGYSLTIWDLGGQESF-------RP------- 73 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE--EEE--ESSEEEEEEEETTEEEEEEEESSSGGG-------GG-------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc--cCc--ccccccceeeeCcEEEEEEeccccccc-------cc-------
Confidence 456899999999999999999999876543 222 334445677789999999999997765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----C-CCCCEEEEEecCCCCcCcc--------cccc---cCCCc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P-MNIPVIYVWNKIDYSGHQK--------NINY---KNNIA 365 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~-~~~piivV~NK~Dl~~~~~--------~~~~---~~~~~ 365 (472)
....++..+|++|||+|+++........+.+..+ . .+.|+++++||.|+.+... .+.. ...+.
T Consensus 74 -~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 74 -LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp -GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEE
T ss_pred -cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceE
Confidence 2445788999999999999875444333322221 1 5789999999999876532 1122 23455
Q ss_pred eEEEEeccCccHHHHHHHHHHHh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++.+||.+|+|+.+.+++|.+++
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 88999999999999999998764
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=7.8e-18 Score=158.69 Aligned_cols=140 Identities=22% Similarity=0.177 Sum_probs=99.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecc------------------------------cCceeeeEEEEEEEeCCeeEE
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTS------------------------------IAGTTRDKITKTIQINKFLFK 275 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~------------------------------~~gtt~d~~~~~~~~~~~~i~ 275 (472)
+|+++|++|+|||||+++|+.....++++ ..|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998765444321 267899988888889999999
Q ss_pred EEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCc
Q psy9409 276 ITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSG 353 (472)
Q Consensus 276 liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~ 353 (472)
||||||+.++ . ......+..+|++|+|+|++.+.... ....+.+.. ...++++|+||+|+..
T Consensus 81 liDTpG~~~~-------~--------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 81 IADTPGHEQY-------T--------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEECCcHHHH-------H--------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 9999998765 2 12334578899999999998763211 112233322 2245788999999975
Q ss_pred Ccc--------cc---cccCC---CceEEEEeccCccHHHHH
Q psy9409 354 HQK--------NI---NYKNN---IANIYLSASKRIGINLLR 381 (472)
Q Consensus 354 ~~~--------~~---~~~~~---~~~i~vSA~~g~gi~~L~ 381 (472)
... .+ ....+ .+++++||++|.|+.+..
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 145 YSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 321 11 11222 458999999999998543
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=1.9e-17 Score=152.14 Aligned_cols=151 Identities=24% Similarity=0.307 Sum_probs=97.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
+..++|+++|++|+|||||+|+|++.. ...+++.+++|.+...... + ..+.+|||||+....... .....+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~-~~~~~~~~~- 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSK-EEKEKWQKL- 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCCh-hHHHHHHHH-
Confidence 456899999999999999999999986 5556788888887654332 3 379999999976531000 000111111
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------ccc----cc-CCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NIN----YK-NNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~----~~-~~~~~i~ 368 (472)
..........+|++++|+|++++.... ...+++.+ ..+.|+++|+||+|+..... .+. .. ...++++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~-~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKEL-DLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHH-HHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 111222234578999999998753322 22222222 25789999999999975432 111 11 1247999
Q ss_pred EEeccCccHH
Q psy9409 369 LSASKRIGIN 378 (472)
Q Consensus 369 vSA~~g~gi~ 378 (472)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999974
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=4.7e-18 Score=157.56 Aligned_cols=149 Identities=29% Similarity=0.370 Sum_probs=109.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-----------------ecccCceeeeEEEEEEE--eCCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-----------------VTSIAGTTRDKITKTIQ--INKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-----------------v~~~~gtt~d~~~~~~~--~~~~~i~liDTpG~~~~ 285 (472)
.+|+++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.++||||+.++
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 579999999999999999999643211 01223566777777777 88999999999998776
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NIN 359 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~ 359 (472)
.......+..+|++|+|+|+.++ ......+.+..+ ..+.|+++|+||+|+..... .+.
T Consensus 84 ---------------~~~~~~~~~~~D~ailvVda~~g-~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 84 ---------------IKEMIRGLRQADIAILVVDANDG-IQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp ---------------HHHHHHHHTTSSEEEEEEETTTB-STHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred ---------------eecccceecccccceeeeecccc-cccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 33344567889999999999976 333334443333 36789999999999984332 111
Q ss_pred -----cc-----CCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 360 -----YK-----NNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 360 -----~~-----~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.. ..+|++++||++|.|+++|++.|.+.++
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 1357999999999999999999998764
No 176
>KOG1489|consensus
Probab=99.73 E-value=9.2e-18 Score=160.70 Aligned_cols=154 Identities=25% Similarity=0.301 Sum_probs=118.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCee-EEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL-FKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~-i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..|++||-||+|||||+|+|...... |.+++.||......++.+++.. +.+-|.||+.+. ...-..+|. .
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G-------Ah~nkGlG~-~ 267 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG-------AHMNKGLGY-K 267 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCcccccc-------ccccCcccH-H
Confidence 46899999999999999999998885 6999999999888888887765 999999999886 332333333 3
Q ss_pred hhcccccccEEEEEEeCCCC---CCchHHHHHHHhC------CCCCCEEEEEecCCCCcCcc----cccccCC-CceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYD---KHTDFDKKIIKNF------PMNIPVIYVWNKIDYSGHQK----NINYKNN-IANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~---~~~~~~~~il~~l------~~~~piivV~NK~Dl~~~~~----~~~~~~~-~~~i~v 369 (472)
.+..+.+|+..+||+|.+.+ ..++.++.+..++ -...|.++|.||+|+.+... .+.+... ..++++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEe
Confidence 44567889999999999988 4444333333333 15789999999999965443 2333333 349999
Q ss_pred EeccCccHHHHHHHHHHH
Q psy9409 370 SASKRIGINLLRNTLLDL 387 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~ 387 (472)
||++++|+.+|++.|.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999988764
No 177
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=145.09 Aligned_cols=159 Identities=25% Similarity=0.321 Sum_probs=114.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh-
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG- 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~- 300 (472)
...-|+++|.+|||||||+|+|+++. .+.++..||.|+......+ ++ .+.++|.||++.. +-|...-+.++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyA----kv~k~~~e~w~~ 95 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYA----KVPKEVKEKWKK 95 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccc----cCCHHHHHHHHH
Confidence 45689999999999999999999965 6889999999997754443 33 3889999998865 11222222221
Q ss_pred -HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc------cccc----cCCCc--e
Q psy9409 301 -IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK------NINY----KNNIA--N 366 (472)
Q Consensus 301 -i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~------~~~~----~~~~~--~ 366 (472)
+......-.+..++++++|+..+ ..+...++++.+. .+.|+++|+||+|...... .+.+ ..... +
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~-~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHP-PKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCC-CcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 33333333447789999999987 4444556665553 6899999999999987643 1111 12222 7
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+..|+.++.|++++...|.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 88999999999999999988764
No 178
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=2.6e-16 Score=148.92 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=105.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe--CCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+++++...+.. ...++...+.....+.. +...+.+|||+|...+ ...
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-------~~~----- 74 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEK-KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-------GGL----- 74 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCchhh-------hhh-----
Confidence 45899999999999999998776655421 22333333343333333 3467899999997665 211
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHH---hCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEec
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIK---NFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSAS 372 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~---~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~ 372 (472)
...++..+|++++|+|.++..++.....++. ....+.|+++|+||+|+..... .+.+..+..++++||+
T Consensus 75 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (215)
T PTZ00132 75 ---RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAK 151 (215)
T ss_pred ---hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCC
Confidence 2235678899999999998765543222222 2236789999999999865332 2233456789999999
Q ss_pred cCccHHHHHHHHHHHhhc
Q psy9409 373 KRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~~ 390 (472)
+|.|+++++.+|.+.+..
T Consensus 152 ~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 152 SNYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988743
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=3.2e-17 Score=153.93 Aligned_cols=149 Identities=19% Similarity=0.129 Sum_probs=96.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCc--ceecccCceeeeEEEEEEEeC---------------------------C----
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDV--AIVTSIAGTTRDKITKTIQIN---------------------------K---- 271 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~--~~v~~~~gtt~d~~~~~~~~~---------------------------~---- 271 (472)
++|+++|+.|+|||||+.+|.+... ..-....+.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999976521 000111111211111111111 2
Q ss_pred --eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc----hHHHHHHHhCCCCCCEEEE
Q psy9409 272 --FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT----DFDKKIIKNFPMNIPVIYV 345 (472)
Q Consensus 272 --~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~----~~~~~il~~l~~~~piivV 345 (472)
..+.||||||+..+ .......+..+|++++|+|++++... ..+.. +... ...|+++|
T Consensus 81 ~~~~i~~iDtPG~~~~---------------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~-~~~~-~~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHEIL---------------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA-LEIM-GLKHIIIV 143 (203)
T ss_pred cccEEEEEECCChHHH---------------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH-HHHc-CCCcEEEE
Confidence 67999999997655 33455667789999999999974221 12222 2222 23579999
Q ss_pred EecCCCCcCcc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 346 WNKIDYSGHQK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 346 ~NK~Dl~~~~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||+|+..... .+.+ ..+.+++++||++|.|+++|++.|.+.+..
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 144 QNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 99999976332 1111 125689999999999999999999987754
No 180
>KOG0086|consensus
Probab=99.72 E-value=3e-17 Score=140.71 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=116.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+|++++|+.|.|||+|+..+..+.+.- ........++-...+.+++. ++.+|||+|+..+ ..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD-dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErF---------------RS 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD-DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERF---------------RS 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc-cccceeeeeecceeeeecCcEEEEEEeecccHHHH---------------HH
Confidence 799999999999999999999887742 22334456777777777764 6899999998887 33
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA 371 (472)
-+..+++.|-..++|+|+++.++++.+..++... .+++.+++++||.||....+ .+++....-+.++||
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa 153 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 153 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecc
Confidence 4667999999999999999998887555554433 36777899999999987765 233344456899999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
+||+|++|.|-...+.+
T Consensus 154 ~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTI 170 (214)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999987766655
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.72 E-value=7.7e-17 Score=176.56 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=113.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
....+.|+++|++|+|||||+++|.+..+.. +..+|.|.+.....+.+++..+.||||||+..+ ...
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F-------~~m----- 353 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEAGGITQHIGAYQVETNGGKITFLDTPGHEAF-------TAM----- 353 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-cccCceeeeccEEEEEECCEEEEEEECCCCccc-------hhH-----
Confidence 3456789999999999999999999877653 566788888877788888999999999999887 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cc------cccC--CCce
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NI------NYKN--NIAN 366 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~------~~~~--~~~~ 366 (472)
....+..+|++|+|+|++++. ...+.+.+... ..+.|+|+|+||+|+..... .+ .+.+ .+++
T Consensus 354 ---~~rga~~aDiaILVVdAddGv-~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~ 429 (787)
T PRK05306 354 ---RARGAQVTDIVVLVVAADDGV-MPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIF 429 (787)
T ss_pred ---HHhhhhhCCEEEEEEECCCCC-CHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceE
Confidence 223567899999999998852 22233333333 26789999999999965431 11 1112 2689
Q ss_pred EEEEeccCccHHHHHHHHHH
Q psy9409 367 IYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~ 386 (472)
+++||++|.|+++|+++|..
T Consensus 430 vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 430 VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEeCCCCCCchHHHHhhhh
Confidence 99999999999999999874
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.71 E-value=8.8e-17 Score=172.17 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=110.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
...++|+++|++|+|||||+++|.+..+.. ...+|+|.+.....+.+++. .+.||||||+..+ ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-------~~~----- 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-------TSM----- 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcch-------hhH-----
Confidence 355789999999999999999999987753 56678888887777777554 8999999999887 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccc------ccC--CCce
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NIN------YKN--NIAN 366 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~------~~~--~~~~ 366 (472)
....+..+|++++|+|++++. .....+.+... ..+.|+++++||+|+..... .+. ..+ ..++
T Consensus 152 ---r~rga~~aDiaILVVda~dgv-~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 152 ---RARGAKVTDIVVLVVAADDGV-MPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred ---HHhhhccCCEEEEEEECCCCC-CHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceE
Confidence 223567899999999998753 22223333332 25789999999999965331 111 111 2479
Q ss_pred EEEEeccCccHHHHHHHHHH
Q psy9409 367 IYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~ 386 (472)
+++||++|.|+++++++|..
T Consensus 228 v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEECCCCCChHHHHHhhhh
Confidence 99999999999999999864
No 183
>KOG0395|consensus
Probab=99.71 E-value=7.2e-17 Score=150.14 Aligned_cols=150 Identities=21% Similarity=0.242 Sum_probs=122.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..||+++|.+|||||+|..++++..+. ..+.+|..|.+...+.+++. .+.++||+|..++ ...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~-------~~~------ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEF-------SAM------ 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccC-------hHH------
Confidence 468999999999999999999999884 66777888888888888764 5789999997776 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----C-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...++..+|++++||++++..+++....+.+.+ . ...|+++|+||+|+..... .++..++++++++
T Consensus 68 --~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~ 145 (196)
T KOG0395|consen 68 --RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIET 145 (196)
T ss_pred --HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEe
Confidence 234778899999999999998888655555544 2 5579999999999987543 3455678899999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||+...+++++|..|.+.+..
T Consensus 146 Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 146 SAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred eccCCcCHHHHHHHHHHHHHh
Confidence 999999999999999998854
No 184
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=4.3e-17 Score=159.65 Aligned_cols=224 Identities=20% Similarity=0.209 Sum_probs=137.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----ec------c------cCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----VT------S------IAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----v~------~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|+++|++|+|||||+|+|+.....+ +. + ..+.|.......+.++++.+.+|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 48999999999999999998643221 10 0 1133344445677788999999999998765
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cccccC
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYKN 362 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~~ 362 (472)
.......+..+|++++|+|++...... ...+++.+ ..+.|+++|+||+|+..... .+.+..
T Consensus 78 ------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 78 ------------VGETRAALRAADAALVVVSAQSGVEVG-TEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred ------------HHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 223445677899999999999863322 22222222 25789999999999986542 234445
Q ss_pred CCceEE--EEeccCccHHHHHHHHHHHhh-ccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCchhHH
Q psy9409 363 NIANIY--LSASKRIGINLLRNTLLDLIE-KTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS--EKNFEKNLELI 437 (472)
Q Consensus 363 ~~~~i~--vSA~~g~gi~~L~~~l~~~~~-~~~~~~~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~el~ 437 (472)
+.++++ ++.++|.|+..+.+.+..... +...........+.......+++...|-+.+...++. ++|++.. ++.
T Consensus 145 ~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~-~~~ 223 (268)
T cd04170 145 GRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGG-ELT 223 (268)
T ss_pred CCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCC-CCC
Confidence 555544 457899999999888876652 2121110122334445555555555555544433322 4666643 566
Q ss_pred HHHHHHHHHHH---hchh--------CCCCchhHHHHHhh
Q psy9409 438 AEDLRFCHEKL---SSII--------GKSTTNDLLDNIFS 466 (472)
Q Consensus 438 ~~el~~a~~~l---~~i~--------g~~~~e~iLd~iF~ 466 (472)
.++|..+++.. +.+. ...+.+++||.+-.
T Consensus 224 ~~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~ 263 (268)
T cd04170 224 EEELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVH 263 (268)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHH
Confidence 66665555432 2221 23567777776643
No 185
>KOG0088|consensus
Probab=99.70 E-value=8.9e-18 Score=144.74 Aligned_cols=149 Identities=20% Similarity=0.194 Sum_probs=113.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.|||+++|..-||||||+-+++.+.+.- .........+....+.+++. .+.+|||+|+..+ .
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~-kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErf---------------H 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC-KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERF---------------H 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch-hhHHHHHHHHhhcccccccceeeeeeeeccchHhh---------------h
Confidence 4799999999999999999999887742 22222222333445555554 5889999999887 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....-+++.++.+|+|||+++.++++.. .++.+.+...+-+++|+||+||..... ..++..|..++++|
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTS 156 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETS 156 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecc
Confidence 2234589999999999999999888733 444444456778999999999987654 34556788899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|+.+.||.++|+.|...+
T Consensus 157 Ak~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKM 174 (218)
T ss_pred cccccCHHHHHHHHHHHH
Confidence 999999999999998876
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.70 E-value=1.3e-16 Score=171.54 Aligned_cols=150 Identities=22% Similarity=0.258 Sum_probs=106.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce--------ec------ccCceeeeEEEEEEEeC---C--eeEEEEeCCCCCccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI--------VT------SIAGTTRDKITKTIQIN---K--FLFKITDTAGIPDIN 286 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~--------v~------~~~gtt~d~~~~~~~~~---~--~~i~liDTpG~~~~~ 286 (472)
+++++|++++|||||+++|+.....+ +. ...|.|.+.....+.+. + +.+.||||||+.++
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF- 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF- 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-
Confidence 69999999999999999998753221 11 12366666555555542 2 68999999999887
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
... ...+++.+|++|+|+|++++........+......+.|+++|+||+|+..... .+.+.
T Consensus 84 ------~~~--------v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~ 149 (595)
T TIGR01393 84 ------SYE--------VSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEV 149 (595)
T ss_pred ------HHH--------HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHH
Confidence 332 33467789999999999986443322222222235789999999999965432 23333
Q ss_pred CCC---ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 362 NNI---ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 362 ~~~---~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+. +++++||++|.|+++|++.|.+.+..
T Consensus 150 lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 150 IGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred hCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 343 48999999999999999999998854
No 187
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.70 E-value=1.4e-16 Score=148.46 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=98.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC------Ccc---------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS------DVA---------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~------~~~---------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
.++|+++|++++|||||+++|++. ... ......|+|.+.....+.+++..+.|+||||+.++
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY--- 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH---
Confidence 368999999999999999999864 110 01125678888887788888899999999998766
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------cc-
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK-------NI- 358 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~-------~~- 358 (472)
+......+..+|++++|+|++.+- .....+++..+ ..+.| +++|+||+|+..... .+
T Consensus 79 ------------~~~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~ 145 (195)
T cd01884 79 ------------IKNMITGAAQMDGAILVVSATDGP-MPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred ------------HHHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 334555778899999999998752 22233333332 24566 789999999964332 11
Q ss_pred ---cc----cCCCceEEEEeccCccHH
Q psy9409 359 ---NY----KNNIANIYLSASKRIGIN 378 (472)
Q Consensus 359 ---~~----~~~~~~i~vSA~~g~gi~ 378 (472)
.. ..+.+++++||++|.|+.
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCC
Confidence 11 124789999999999853
No 188
>KOG0091|consensus
Probab=99.69 E-value=2.8e-17 Score=142.52 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=119.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-C--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-K--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+++.++|++-||||||+..+....++..+ .|....|+....+++. | .++.+|||+|+..+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerf--------------- 71 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF--------------- 71 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHH---------------
Confidence 478999999999999999999999887644 5667777766666653 3 46899999998887
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC----C-CCCC-EEEEEecCCCCcCcc-------cccccCCCceE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P-MNIP-VIYVWNKIDYSGHQK-------NINYKNNIANI 367 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~-~~~p-iivV~NK~Dl~~~~~-------~~~~~~~~~~i 367 (472)
...+..+++++-.+++|+|.++..+++....++++. . +.++ +.+|+.|+||...++ .++...+..++
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FV 151 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFV 151 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEE
Confidence 334778999999999999999998887555555443 2 3444 678999999987654 35667889999
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++||++|.|+++-++.|.+.+
T Consensus 152 ETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 152 ETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EecccCCCcHHHHHHHHHHHH
Confidence 999999999999999998876
No 189
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.69 E-value=2.1e-16 Score=147.99 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=94.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-------CeeEEEEeCCCCCccccccccchhHHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-------KFLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-------~~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
+||+++|.+|||||||++++++..+.. ...|+...+.....+.++ .+.+.+|||+|...+ .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-------~---- 68 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-------K---- 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH-------H----
Confidence 589999999999999999999987643 333433344444444442 256899999998776 1
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-------------------CCCCCEEEEEecCCCCcC
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-------------------PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-------------------~~~~piivV~NK~Dl~~~ 354 (472)
.....+++++|++|+|+|++++.+++ |..++.+.. ..+.|+++|+||+|+.+.
T Consensus 69 ----~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 69 ----STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ----HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 12345788999999999999987765 333333211 136899999999999764
Q ss_pred cc-----------cccccCCCceEEEEeccC
Q psy9409 355 QK-----------NINYKNNIANIYLSASKR 374 (472)
Q Consensus 355 ~~-----------~~~~~~~~~~i~vSA~~g 374 (472)
.. .+++..+.+.+.+++.+.
T Consensus 145 r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred cccchHHHhhHhhhHHHhcCCceEEEecCCc
Confidence 31 244566778888887654
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.69 E-value=9.2e-17 Score=167.49 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=103.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceec------------------------------ccCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT------------------------------SIAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~------------------------------~~~gtt~d~~~~~~~~~~~ 272 (472)
..++|+++|++|+|||||+++|+.....+.. ..+|+|+|.....+.++++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4579999999999999999999965433221 1579999999999999999
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC--CCCc--hHHHHHHHhCCCCCCEEEEEec
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY--DKHT--DFDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~--~~~~--~~~~~il~~l~~~~piivV~NK 348 (472)
.+.||||||+.++ .......+..+|++++|+|+++ .... .....+...+ ...|+++|+||
T Consensus 85 ~i~liDtpG~~~~---------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK 148 (425)
T PRK12317 85 YFTIVDCPGHRDF---------------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINK 148 (425)
T ss_pred EEEEEECCCcccc---------------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEc
Confidence 9999999998776 2223345678999999999987 3111 1222333333 22469999999
Q ss_pred CCCCcCcc--------ccc---ccC-----CCceEEEEeccCccHHHHH
Q psy9409 349 IDYSGHQK--------NIN---YKN-----NIANIYLSASKRIGINLLR 381 (472)
Q Consensus 349 ~Dl~~~~~--------~~~---~~~-----~~~~i~vSA~~g~gi~~L~ 381 (472)
+|+..... .+. +.. ..+++++||++|.|++++.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 99975221 111 111 2579999999999998743
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.69 E-value=2e-16 Score=170.10 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=111.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+.|+++|++|+|||||+|+|.+.+.. .....+|+|.+.....+.+++..+.+|||||+..+ +.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---------------~~ 65 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---------------IS 65 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---------------HH
Confidence 46899999999999999999975421 12345688999888888888899999999997766 33
Q ss_pred hhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCC-EEEEEecCCCCcCcc------ccc----cc---CCCce
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIP-VIYVWNKIDYSGHQK------NIN----YK---NNIAN 366 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~p-iivV~NK~Dl~~~~~------~~~----~~---~~~~~ 366 (472)
.....+..+|++++|+|++++...+ ....+++. .+.| +++|+||+|+.+... .+. .. .++++
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcE
Confidence 4556778899999999999852211 11223332 3567 999999999976442 111 11 15789
Q ss_pred EEEEeccCccHHHHHHHHHHHhhc
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+++||++|.|++++++.|.+.+..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999999887743
No 192
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.69 E-value=1.8e-16 Score=172.27 Aligned_cols=151 Identities=23% Similarity=0.266 Sum_probs=108.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe----CCeeEEEEeCCCCCccccccccchhHH
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI----NKFLFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~----~~~~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
.....+|+++|++|+|||||+++|.+..+.. +..+|.|.+.....+.+ .+..+.||||||+..+ ..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F-------~~-- 310 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF-------SS-- 310 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-------HH--
Confidence 4566799999999999999999999887753 55667776644444333 3578999999998766 22
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cc------cccC--
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NI------NYKN-- 362 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~------~~~~-- 362 (472)
.....+..+|++|+|+|++++.... ..+.+..+ ..+.|+++|+||+|+..... .+ ....
T Consensus 311 ------mr~rg~~~aDiaILVVDA~dGv~~Q-T~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~ 383 (742)
T CHL00189 311 ------MRSRGANVTDIAILIIAADDGVKPQ-TIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGG 383 (742)
T ss_pred ------HHHHHHHHCCEEEEEEECcCCCChh-hHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCC
Confidence 2334667899999999998753222 22222222 35789999999999976432 11 1112
Q ss_pred CCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 363 NIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 363 ~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.++++++||++|.|+++|++.|....
T Consensus 384 ~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CceEEEEECCCCCCHHHHHHhhhhhh
Confidence 26899999999999999999987643
No 193
>KOG0073|consensus
Probab=99.67 E-value=1.4e-15 Score=132.37 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=112.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|.++|..|+||||++++|.+.+...+++ |.-+.-.++.++++.+.+||..|+... . +-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~l-------r--------~~ 76 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTL-------R--------SY 76 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchh-------H--------HH
Confidence 6999999999999999999999998544433 344445677889999999999998876 2 23
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC----C-CCCCEEEEEecCCCCcCcc-----------cccccCCCceE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P-MNIPVIYVWNKIDYSGHQK-----------NINYKNNIANI 367 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~-~~~piivV~NK~Dl~~~~~-----------~~~~~~~~~~i 367 (472)
..+|+..+|++|||+|.+++...+.....++.+ . .+.|++++.||.|+...-. .+.+...++++
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 556899999999999999875544333332222 1 4689999999999985432 22344567899
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.|||.+|+++.+-+++|...+.
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred EEeccccccHHHHHHHHHHHHH
Confidence 9999999999999998887663
No 194
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=2.6e-15 Score=134.77 Aligned_cols=156 Identities=23% Similarity=0.290 Sum_probs=100.5
Q ss_pred EEEEEecCCCchhHHHHhhhCC-CcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS-DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~-~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.|+++|++|+|||||+|.|.+. .....+..+++|.+... +..++ .+.+|||||+...... ......... .....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~-~~~~~~~~~-~~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVS-KEVKEKWGK-LIEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccC-HHHHHHHHH-HHHHH
Confidence 3899999999999999999953 33445666666665433 33333 8999999998764110 000111111 12222
Q ss_pred hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------c----cc-ccCCCceEEEEe
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------N----IN-YKNNIANIYLSA 371 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~----~~-~~~~~~~i~vSA 371 (472)
.......+++++++|.+...... ....++.. .+.|+++|+||+|+..... . +. .....+++++||
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 33334678999999998753222 22233332 3589999999999965432 1 11 133467999999
Q ss_pred ccCccHHHHHHHHHHHh
Q psy9409 372 SKRIGINLLRNTLLDLI 388 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~ 388 (472)
+++.|++++++.|.+.+
T Consensus 154 ~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 154 LKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 195
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=2.4e-15 Score=140.32 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=106.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecc-cCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTS-IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~-~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
++|+++|.||+|||||+|+|++.+...++. .+++|++.......+++..+.++||||+.+.. ...+.+.......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~----~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS----VSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc----CChHHHHHHHHHH
Confidence 479999999999999999999988754443 45788888888888899999999999998761 1122333332333
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC----C--CCCCEEEEEecCCCCcCcc----------c---ccccCCC
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF----P--MNIPVIYVWNKIDYSGHQK----------N---INYKNNI 364 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~--~~~piivV~NK~Dl~~~~~----------~---~~~~~~~ 364 (472)
.......+|++|+|+|+... + .....+++.+ + ...++++|+||+|...... . +-+..+.
T Consensus 77 ~~~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~ 154 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG 154 (196)
T ss_pred HHhcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC
Confidence 34456789999999998873 2 2223333332 2 1268899999999775432 0 1111122
Q ss_pred ceEEEE-----eccCccHHHHHHHHHHHhhc
Q psy9409 365 ANIYLS-----ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 365 ~~i~vS-----A~~g~gi~~L~~~l~~~~~~ 390 (472)
.++.++ +..+.++++|++.|.+.+..
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 333333 45567777777777777653
No 196
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.65 E-value=7.2e-16 Score=134.56 Aligned_cols=141 Identities=28% Similarity=0.319 Sum_probs=99.4
Q ss_pred EEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe--CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhc
Q psy9409 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~ 306 (472)
++|++|+|||||+|+|.+..... .....+..+........ .+..+.+|||||.... ... ...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~--------~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF-------RSL--------RRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHH-------HhH--------HHH
Confidence 57999999999999999887621 22222324444444443 3568999999998765 221 234
Q ss_pred ccccccEEEEEEeCCCCCCchHHH-----HHHHhCCCCCCEEEEEecCCCCcCccc--------ccccCCCceEEEEecc
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDK-----KIIKNFPMNIPVIYVWNKIDYSGHQKN--------INYKNNIANIYLSASK 373 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~-----~il~~l~~~~piivV~NK~Dl~~~~~~--------~~~~~~~~~i~vSA~~ 373 (472)
.++.+|++++|+|++.+....... ..........|+++|+||+|+...... .......+++++|+++
T Consensus 65 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 144 (157)
T cd00882 65 YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKT 144 (157)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCC
Confidence 668899999999999874433222 222223478999999999999765431 1223467899999999
Q ss_pred CccHHHHHHHHH
Q psy9409 374 RIGINLLRNTLL 385 (472)
Q Consensus 374 g~gi~~L~~~l~ 385 (472)
+.|+++++++|.
T Consensus 145 ~~~i~~~~~~l~ 156 (157)
T cd00882 145 GENVEELFEELA 156 (157)
T ss_pred CCChHHHHHHHh
Confidence 999999999875
No 197
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=3.8e-15 Score=148.41 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=107.9
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe------------------------CCeeEEEEeCCCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI------------------------NKFLFKITDTAGI 282 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~------------------------~~~~i~liDTpG~ 282 (472)
|+++|.||||||||+|+|++... .++++|++|.+.......+ ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999876 5699999998877654443 2357999999999
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC-------------CCch----------HH---------H
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD-------------KHTD----------FD---------K 330 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~-------------~~~~----------~~---------~ 330 (472)
... ....+.+ -.+.+..+++||++++|+|++.. +... .| .
T Consensus 80 v~g-------a~~~~gl-g~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~ 151 (318)
T cd01899 80 VPG-------AHEGKGL-GNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWE 151 (318)
T ss_pred CCC-------ccchhhH-HHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 2222222 13456679999999999999741 0000 00 0
Q ss_pred H--------------------------------HHHh----------------------CCCCCCEEEEEecCCCCcCcc
Q psy9409 331 K--------------------------------IIKN----------------------FPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 331 ~--------------------------------il~~----------------------l~~~~piivV~NK~Dl~~~~~ 356 (472)
. +++. +...+|+|+|+||+|+.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~ 231 (318)
T cd01899 152 KIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN 231 (318)
T ss_pred HHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH
Confidence 0 0000 012479999999999864432
Q ss_pred c---cc-ccCCCceEEEEeccCccHHHHHH-HHHHHhhc
Q psy9409 357 N---IN-YKNNIANIYLSASKRIGINLLRN-TLLDLIEK 390 (472)
Q Consensus 357 ~---~~-~~~~~~~i~vSA~~g~gi~~L~~-~l~~~~~~ 390 (472)
. +. .....+++++||+.+.++++|.+ .+.+.++.
T Consensus 232 ~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 232 NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 11 12245799999999999999998 69988854
No 198
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.64 E-value=1.5e-15 Score=145.75 Aligned_cols=114 Identities=26% Similarity=0.269 Sum_probs=81.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCccee-----------------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIV-----------------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v-----------------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|+++|++|+|||||+++|+.....+. ....+.|.+.....+.+++.++.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999986432211 012234555666778889999999999999887
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~ 355 (472)
.. ....+++.+|++++|+|+++... .....+.+.+ ..++|+++|+||+|+...+
T Consensus 78 ----~~--------~~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 78 ----IA--------EVERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRKLNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred ----HH--------HHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHHcCCCEEEEEECccccCCC
Confidence 22 23446788999999999998632 2222332222 2578999999999997543
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.64 E-value=1.6e-15 Score=163.37 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=105.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce--------e------cccCceeeeEEEEEEEeC-----CeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI--------V------TSIAGTTRDKITKTIQIN-----KFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~--------v------~~~~gtt~d~~~~~~~~~-----~~~i~liDTpG~~~~ 285 (472)
-+++|+|+.++|||||+++|+.....+ + ....|.|.......+.|. ++.+.||||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 379999999999999999998642211 0 112355555444444443 578999999999987
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINY 360 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~ 360 (472)
...+ ..+++.+|++|+|+|++++........+......+.|+++|+||+|+..... .+.+
T Consensus 88 -------~~~v--------~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~ 152 (600)
T PRK05433 88 -------SYEV--------SRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIED 152 (600)
T ss_pred -------HHHH--------HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH
Confidence 3333 2356789999999999986433322222222235789999999999975432 2333
Q ss_pred cCCC---ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 361 KNNI---ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 361 ~~~~---~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
..+. +++++||++|.|+++|+++|.+.+..
T Consensus 153 ~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 3333 38999999999999999999998854
No 200
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=1.3e-15 Score=167.59 Aligned_cols=223 Identities=17% Similarity=0.129 Sum_probs=135.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-----ecc------------cCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-----VTS------------IAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-----v~~------------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
.+|+|+|++|+|||||+|+|+.....+ +.+ ..|+|.+.....+.+++..+.+|||||+.++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~-- 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF-- 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch--
Confidence 379999999999999999997532211 111 4578888888999999999999999999876
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
.. .....++.+|++++|+|++++.... ...++..+ ..+.|+++|+||+|+..... .+...
T Consensus 89 -----~~--------~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~ 154 (689)
T TIGR00484 89 -----TV--------EVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQR 154 (689)
T ss_pred -----hH--------HHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 22 2344678899999999998763222 22333322 25789999999999986542 22222
Q ss_pred CCC----ceEEEEeccCccHHHHHHHHHHHh-hccCCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHhhc--ccccCC
Q psy9409 362 NNI----ANIYLSASKRIGINLLRNTLLDLI-EKTQTIES--SPYLARERHIHSLNEANYYLSCAIKIINQS--EKNFEK 432 (472)
Q Consensus 362 ~~~----~~i~vSA~~g~gi~~L~~~l~~~~-~~~~~~~~--~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~--~~~~~~ 432 (472)
.+. ..+++|+..+ +..+++.+.... .+...... .....+....+.+.++.+.|-+++...++. ++|++.
T Consensus 155 l~~~~~~~~ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~ 232 (689)
T TIGR00484 155 LGANAVPIQLPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG 232 (689)
T ss_pred hCCCceeEEeccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC
Confidence 221 2678888766 444444433222 11111110 011122333444455555554444433222 466664
Q ss_pred chhHHHHHHHHHHHHH---hc--------hhCCCCchhHHHHHhh
Q psy9409 433 NLELIAEDLRFCHEKL---SS--------IIGKSTTNDLLDNIFS 466 (472)
Q Consensus 433 ~~el~~~el~~a~~~l---~~--------i~g~~~~e~iLd~iF~ 466 (472)
. ++..++++.++... +. .....+.+.+||.|..
T Consensus 233 ~-~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~ 276 (689)
T TIGR00484 233 E-ELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVD 276 (689)
T ss_pred C-CCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHH
Confidence 3 55666666665552 12 2233567899998865
No 201
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=7.8e-15 Score=138.88 Aligned_cols=160 Identities=20% Similarity=0.232 Sum_probs=120.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..+++|.++|.+|+|||||+|+|++.+.+.++..+.+++........+++..++||||||+++. .+.-. ...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg-------~~~D~-~~r 108 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDG-------KDKDA-EHR 108 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccc-------hhhhH-HHH
Confidence 4568899999999999999999998888877777766666666666677888999999999986 22111 112
Q ss_pred HhhhcccccccEEEEEEeCCCCCC---chHHHHHHHhCCCCCCEEEEEecCCCCcCccc-----------c---------
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN-----------I--------- 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~---~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~-----------~--------- 358 (472)
+...+++.+.|++++++|+.++.. .+.+..++... .+.|+++++|.+|...+... +
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 345678889999999999998743 23555555433 55899999999998766310 0
Q ss_pred --cc--cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 359 --NY--KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 --~~--~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+ ..-.|++.+|...+.|+++|...+.+.++.
T Consensus 188 ~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 188 ALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 00 112478888999999999999999999864
No 202
>KOG0410|consensus
Probab=99.63 E-value=3.2e-15 Score=143.45 Aligned_cols=183 Identities=19% Similarity=0.198 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCe
Q psy9409 196 DFFNELIKIKKKLLKIIQQGK--KRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKF 272 (472)
Q Consensus 196 ~l~~~l~~l~~~l~~~~~~~~--~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~ 272 (472)
-++.+...++++++..-+... .+..-.+...|++||.+|+|||||+++|.+..... .+.-..|.|+......+ .|.
T Consensus 148 llr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lpsg~ 226 (410)
T KOG0410|consen 148 LLRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPSGN 226 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCCCc
Confidence 345566667777766655541 22233345679999999999999999999655432 45556777776666555 577
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHH---HHHHHhCC-CCCC----EEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFP-MNIP----VIY 344 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~---~~il~~l~-~~~p----iiv 344 (472)
.+.+.||-|+... .|...++. ++.++..+..+|++|.|+|++.|...... ...++.+. +..| ++-
T Consensus 227 ~vlltDTvGFisd-----LP~~LvaA--F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 227 FVLLTDTVGFISD-----LPIQLVAA--FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred EEEEeechhhhhh-----CcHHHHHH--HHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 8999999999875 67888888 78899999999999999999999654433 33444443 2223 677
Q ss_pred EEecCCCCcCcccccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 345 VWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 345 V~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
|.||+|..+....-. ....+.+||++|.|++++++.+...+.
T Consensus 300 VdnkiD~e~~~~e~E---~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 300 VDNKIDYEEDEVEEE---KNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred hccccccccccCccc---cCCccccccccCccHHHHHHHHHHHhh
Confidence 999999876543211 112688999999999999999988773
No 203
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=1e-13 Score=145.41 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=70.2
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEec
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNK 348 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK 348 (472)
..++|+||||+.... ...+... ....+..+|++|||+|++.... .....+++.+ ....|+++|+||
T Consensus 230 ~QIIFVDTPGIhk~~------~~~L~k~----M~eqL~eADvVLFVVDat~~~s-~~DeeIlk~Lkk~~K~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAG------QPHLQKM----LNQQLARASAVLAVLDYTQLKS-ISDEEVREAILAVGQSVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCcc------chHHHHH----HHHHHhhCCEEEEEEeCCCCCC-hhHHHHHHHHHhcCCCCCEEEEEEc
Confidence 468899999998640 1212222 1236889999999999987422 2223333333 223599999999
Q ss_pred CCCCcCcc----c----cc----c-cC-CCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 349 IDYSGHQK----N----IN----Y-KN-NIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 349 ~Dl~~~~~----~----~~----~-~~-~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+|+.+... . +. + .. ...+++|||++|.|++.|++.|...=
T Consensus 299 IDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 299 FDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred ccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 99864221 1 11 1 11 23599999999999999999998853
No 204
>KOG0083|consensus
Probab=99.63 E-value=1.3e-16 Score=133.75 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=113.1
Q ss_pred EEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHHhhhc
Q psy9409 229 LIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~ 306 (472)
++|.+++|||+|+-++-...+..-.-+.....|+-...+..++. ++++|||+|+..+ ..-+..
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerf---------------rsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERF---------------RSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHH---------------hhhhHh
Confidence 68999999999998877665543223334556666666677664 6799999999887 233566
Q ss_pred ccccccEEEEEEeCCCCCCchHHHHHHHhC----CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEeccCc
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNF----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSASKRI 375 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~~il~~l----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA~~g~ 375 (472)
+++.+|..++++|+.+..+++..+.++.++ ...+.+.+++||+|+.+... .+++..++|++++||++|.
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~ 146 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGF 146 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccc
Confidence 899999999999999988887444444443 35677899999999976432 4667789999999999999
Q ss_pred cHHHHHHHHHHHhh
Q psy9409 376 GINLLRNTLLDLIE 389 (472)
Q Consensus 376 gi~~L~~~l~~~~~ 389 (472)
|++-.|-.|.+.+.
T Consensus 147 nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 147 NVDLAFLAIAEELK 160 (192)
T ss_pred cHhHHHHHHHHHHH
Confidence 99999999988774
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=3.1e-15 Score=160.02 Aligned_cols=144 Identities=23% Similarity=0.227 Sum_probs=95.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccC-ceeeeEEEEEEEeC------------------CeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-GTTRDKITKTIQIN------------------KFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-gtt~d~~~~~~~~~------------------~~~i~liDTpG~~~~ 285 (472)
..|+++|++|+|||||+|+|.+..+. ...+ ++|++.-...+.++ ..++.||||||+..+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45999999999999999999998764 2333 35543222222111 124889999998776
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc--------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------- 356 (472)
.. .....+..+|++++|+|+++..... ..+.+..+ ..+.|+++|+||+|+.....
T Consensus 83 -------~~--------l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 83 -------TN--------LRKRGGALADLAILIVDINEGFKPQ-TQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred -------HH--------HHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence 22 1223567899999999998742211 11111111 24789999999999964210
Q ss_pred -----------------------cccc--------------cCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 357 -----------------------NINY--------------KNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 357 -----------------------~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
.+.+ ....+++++||++|+|+++|.++|..
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0010 11368999999999999999998864
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=1e-15 Score=145.49 Aligned_cols=137 Identities=20% Similarity=0.219 Sum_probs=95.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc------------------------------eecccCceeeeEEEEEEEeCCeeEE
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA------------------------------IVTSIAGTTRDKITKTIQINKFLFK 275 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~------------------------------~v~~~~gtt~d~~~~~~~~~~~~i~ 275 (472)
+|+++|++++|||||+.+|+..... ......|+|++.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999742110 0112457899999999999999999
Q ss_pred EEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC------Cc-h--HHHHHHHhCCCCCCEEEEE
Q psy9409 276 ITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK------HT-D--FDKKIIKNFPMNIPVIYVW 346 (472)
Q Consensus 276 liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~------~~-~--~~~~il~~l~~~~piivV~ 346 (472)
+|||||+.++ .......+..+|++|+|+|++++. .. . ....+.... ...|+++|+
T Consensus 81 liDtpG~~~~---------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivv 144 (219)
T cd01883 81 ILDAPGHRDF---------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAV 144 (219)
T ss_pred EEECCChHHH---------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEE
Confidence 9999998766 222344567899999999999741 11 1 111122222 236899999
Q ss_pred ecCCCCcC---cc-------cc----ccc----CCCceEEEEeccCccHH
Q psy9409 347 NKIDYSGH---QK-------NI----NYK----NNIANIYLSASKRIGIN 378 (472)
Q Consensus 347 NK~Dl~~~---~~-------~~----~~~----~~~~~i~vSA~~g~gi~ 378 (472)
||+|+... .. .+ ... ..++++++||++|.|++
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 99999832 11 11 111 13679999999999988
No 207
>KOG0081|consensus
Probab=99.62 E-value=2.2e-16 Score=136.32 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=112.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--C---------eeEEEEeCCCCCccccccccch
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--K---------FLFKITDTAGIPDINSKIKKNI 293 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~---------~~i~liDTpG~~~~~~~~~~~~ 293 (472)
+|...+|.+||||||++.+.....+.. .-+.....|+.+..+.++ | ..+.+|||+|++.+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~-qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF-------- 80 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT-QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF-------- 80 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc-eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH--------
Confidence 466778999999999999998877642 223334455555555442 1 24789999998887
Q ss_pred hHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-----CCCCEEEEEecCCCCcCcc-------ccccc
Q psy9409 294 NEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-----MNIPVIYVWNKIDYSGHQK-------NINYK 361 (472)
Q Consensus 294 ~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-----~~~piivV~NK~Dl~~~~~-------~~~~~ 361 (472)
...+-.+++.|-.+++++|.++..++-....++.++. .+..+++++||+||.+... .+++.
T Consensus 81 -------RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 81 -------RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred -------HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence 2235567889999999999999877766666666552 4566999999999987654 46677
Q ss_pred CCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 362 NNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 362 ~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+.||+++||-+|.|+++-.+.|...+
T Consensus 154 yglPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 154 YGLPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred hCCCeeeeccccCcCHHHHHHHHHHHH
Confidence 899999999999999999888877765
No 208
>KOG0075|consensus
Probab=99.62 E-value=8.7e-15 Score=124.99 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=115.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
....+.+.++|-.|+|||||+|.+...++. ...+.|+.+....+.-++..+.+||.||+..+ ...++
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rf-------rsmWe--- 83 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE--- 83 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccH-------HHHHH---
Confidence 455689999999999999999999887663 34455666666777788899999999999988 44444
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCC-CCCCEEEEEecCCCCcCccc--c------ccc--CCCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFP-MNIPVIYVWNKIDYSGHQKN--I------NYK--NNIA 365 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~-~~~piivV~NK~Dl~~~~~~--~------~~~--~~~~ 365 (472)
.+++.+++++||+|+++++.... ...++..-. .+.|+++.+||.|+..+-.. + ... ...-
T Consensus 84 -----rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvc 158 (186)
T KOG0075|consen 84 -----RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVC 158 (186)
T ss_pred -----HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEE
Confidence 48899999999999999865442 333332222 57899999999999877541 1 111 1245
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++.+||+...|++.+.++|.++..
T Consensus 159 C~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 159 CFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEcCCccHHHHHHHHHHHhh
Confidence 899999999999999999998764
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.62 E-value=5.1e-15 Score=159.75 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=105.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
-|+++|++++|||||+++|.+.+.. ......|.|.+.....+.. ++..+.||||||+..+ +.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f---------------i~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF---------------LS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH---------------HH
Confidence 5899999999999999999985422 2234468888876655544 4677899999998766 33
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCC-EEEEEecCCCCcCcc------cccc---c---CCCceEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIP-VIYVWNKIDYSGHQK------NINY---K---NNIANIY 368 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~p-iivV~NK~Dl~~~~~------~~~~---~---~~~~~i~ 368 (472)
.....+..+|++++|+|++.+. .....+.+..+. .+.| +++|+||+|+.+... .+.+ . ...++++
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGV-MAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 4555678899999999998752 222222222221 3455 579999999975432 1111 1 1368999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|+++|++.|.+...
T Consensus 146 VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhhc
Confidence 999999999999999987653
No 210
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=147.40 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=115.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
-|+++|-||+|||||++++...+..+ .++|.||....-..+.. .+..+++-|.||+.+. ...-..+|. +.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKI-adYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG-------As~G~GLG~-~F 231 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKI-ADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG-------ASEGVGLGL-RF 231 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcc-cCCccccccCcccEEEecCCCcEEEecCcccccc-------cccCCCccH-HH
Confidence 48999999999999999999988875 99999999888777776 4557999999999987 222222332 34
Q ss_pred hcccccccEEEEEEeCCCCCC---chHHHHHHHhCC------CCCCEEEEEecCCCCcCccc-------ccccCCCc-eE
Q psy9409 305 WVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFP------MNIPVIYVWNKIDYSGHQKN-------INYKNNIA-NI 367 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~---~~~~~~il~~l~------~~~piivV~NK~Dl~~~~~~-------~~~~~~~~-~i 367 (472)
+..+.++-++++|+|++..+. .+....+..++. .++|.++|+||+|+..+.+. +.+..+.+ .+
T Consensus 232 LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~ 311 (369)
T COG0536 232 LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFY 311 (369)
T ss_pred HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcce
Confidence 556788999999999997542 233333333331 57899999999996655431 22223333 22
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||.++.|+++|...+.+.+..
T Consensus 312 ~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 312 LISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eeehhcccCHHHHHHHHHHHHHH
Confidence 39999999999999999998854
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.61 E-value=9e-15 Score=157.01 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=110.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCccee---------------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCcccccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIV---------------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKI 289 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v---------------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~ 289 (472)
-+|+|+|+.++|||||+++|+....... ....|.|.+.....+.+++..+.+|||||+.++
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df---- 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF---- 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh----
Confidence 4799999999999999999996322111 123467777777788889999999999999887
Q ss_pred ccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh-CCCCCCEEEEEecCCCCcCcc-----c----c-
Q psy9409 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYVWNKIDYSGHQK-----N----I- 358 (472)
Q Consensus 290 ~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~-l~~~~piivV~NK~Dl~~~~~-----~----~- 358 (472)
... ...+++.+|++|+|+|+++.. ......++.. ...+.|.++|+||+|+..... . +
T Consensus 82 ---~~~--------v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~ 149 (607)
T PRK10218 82 ---GGE--------VERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFV 149 (607)
T ss_pred ---HHH--------HHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence 333 334678899999999998752 2222222222 235789999999999875542 0 1
Q ss_pred -----cccCCCceEEEEeccCc----------cHHHHHHHHHHHhhcc
Q psy9409 359 -----NYKNNIANIYLSASKRI----------GINLLRNTLLDLIEKT 391 (472)
Q Consensus 359 -----~~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~~ 391 (472)
.....+|++++||++|. |+..|++.+.+.++.+
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 01235789999999998 6899999999888543
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.61 E-value=3.5e-15 Score=155.64 Aligned_cols=143 Identities=20% Similarity=0.188 Sum_probs=102.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcce------------------------------ecccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAI------------------------------VTSIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~------------------------------v~~~~gtt~d~~~~~~~~~~ 271 (472)
+..++|+++|++++|||||+++|+.....+ .....|+|.|.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 355799999999999999999998532111 01244889999888899999
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc---hHH--HHHHHhCCCCCCEEEEE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT---DFD--KKIIKNFPMNIPVIYVW 346 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~---~~~--~~il~~l~~~~piivV~ 346 (472)
..+.||||||+.++ +......+..+|++++|+|++++.+. ..+ ..+.+.+ ...|+++|+
T Consensus 85 ~~i~iiDtpGh~~f---------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVvi 148 (426)
T TIGR00483 85 YEVTIVDCPGHRDF---------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAI 148 (426)
T ss_pred eEEEEEECCCHHHH---------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEE
Confidence 99999999997766 33344567889999999999987321 111 2233333 235799999
Q ss_pred ecCCCCcCcc--------c---ccccC-----CCceEEEEeccCccHHHH
Q psy9409 347 NKIDYSGHQK--------N---INYKN-----NIANIYLSASKRIGINLL 380 (472)
Q Consensus 347 NK~Dl~~~~~--------~---~~~~~-----~~~~i~vSA~~g~gi~~L 380 (472)
||+|+.+... . +.+.. ..+++++||++|.|+.++
T Consensus 149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred EChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 9999974221 1 11111 357999999999999873
No 213
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=3.3e-15 Score=154.82 Aligned_cols=139 Identities=18% Similarity=0.174 Sum_probs=99.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc---------------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA---------------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~---------------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~ 286 (472)
+..++|+++|++|+|||||+|+|++.... ......|+|.+.....+..++..+.|+||||+.++
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~- 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY- 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH-
Confidence 45589999999999999999999974211 11224788998877777778889999999997765
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------c
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK-------N 357 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~-------~ 357 (472)
+......+..+|++++|+|+..+. .....+.+..+ ..++| +|+|+||+|+.+... .
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~ 153 (409)
T CHL00071 89 --------------VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred --------------HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence 333455677899999999998752 23333333333 24678 778999999976432 1
Q ss_pred ----cccc----CCCceEEEEeccCcc
Q psy9409 358 ----INYK----NNIANIYLSASKRIG 376 (472)
Q Consensus 358 ----~~~~----~~~~~i~vSA~~g~g 376 (472)
+... ...|++++||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 1111 136899999999864
No 214
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.61 E-value=4e-15 Score=145.26 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=97.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCccee---------------ccc------CceeeeEEEEEEEeCCeeEEEEeCCCCCc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIV---------------TSI------AGTTRDKITKTIQINKFLFKITDTAGIPD 284 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v---------------~~~------~gtt~d~~~~~~~~~~~~i~liDTpG~~~ 284 (472)
+|+|+|++|+|||||+++|+.....+. .++ .+.+.......+.+++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 699999999999999999986432211 111 12233344557788999999999999887
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cc
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NI 358 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~ 358 (472)
+ . ......++.+|++++|+|+++.. ......+++.. ..++|+++++||+|+..... .+
T Consensus 84 f-------~--------~~~~~~l~~aD~~IlVvda~~g~-~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l 147 (267)
T cd04169 84 F-------S--------EDTYRTLTAVDSAVMVIDAAKGV-EPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEI 147 (267)
T ss_pred H-------H--------HHHHHHHHHCCEEEEEEECCCCc-cHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHH
Confidence 6 2 22444667899999999998752 22223333332 25789999999999876542 34
Q ss_pred cccCCCceEEEE--eccCccHHHHHHHHHHHh
Q psy9409 359 NYKNNIANIYLS--ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 359 ~~~~~~~~i~vS--A~~g~gi~~L~~~l~~~~ 388 (472)
.+..+.+.+++. ...+.++..+.+.+...+
T Consensus 148 ~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a 179 (267)
T cd04169 148 EEELGIDCTPLTWPIGMGKDFKGVYDRRTGEV 179 (267)
T ss_pred HHHHCCCceeEEecccCCCceEEEEEhhhCEE
Confidence 444555554444 344556666666665544
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.60 E-value=4.8e-15 Score=152.86 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=107.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCc----------c-----eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDV----------A-----IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~----------~-----~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+++|++++|||||+++|++... . ......|+|.+.....+..++..+.|+||||+.++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34568999999999999999999986311 0 01125688998877777777889999999997766
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~------- 356 (472)
+......+..+|++++|+|++.+. .....+.+..+ ..+.| +|+|+||+|+.+...
T Consensus 89 ---------------~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~ 152 (394)
T PRK12736 89 ---------------VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEM 152 (394)
T ss_pred ---------------HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHH
Confidence 333445567899999999998752 22222222222 24677 678999999974332
Q ss_pred ccc----cc----CCCceEEEEeccCc--------cHHHHHHHHHHHhh
Q psy9409 357 NIN----YK----NNIANIYLSASKRI--------GINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~----~~----~~~~~i~vSA~~g~--------gi~~L~~~l~~~~~ 389 (472)
.+. .. ...|++++||++|. ++.+|++.+.+.+.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 111 11 13589999999983 68888888888764
No 216
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=3.2e-15 Score=164.40 Aligned_cols=225 Identities=18% Similarity=0.121 Sum_probs=131.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCc---c--eec------------ccCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDV---A--IVT------------SIAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~---~--~v~------------~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
.+|+|+|++|+|||||+|+|+.... . .++ ...|+|.+.....+.+.+..++|+||||+.++
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-- 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-- 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH--
Confidence 4799999999999999999973211 1 122 35688999988899999999999999998766
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
.. .....+..+|++|+|+|+..+- ......++..+ ..+.|+++++||+|+..... .+.+.
T Consensus 89 -----~~--------ev~~al~~~D~~vlVvda~~g~-~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~ 154 (693)
T PRK00007 89 -----TI--------EVERSLRVLDGAVAVFDAVGGV-EPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDR 154 (693)
T ss_pred -----HH--------HHHHHHHHcCEEEEEEECCCCc-chhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 22 2444667889999999998762 22223333333 35789999999999986543 12222
Q ss_pred CC----CceEEEEeccC-ccHHHHHHHHHHHhhccC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCc
Q psy9409 362 NN----IANIYLSASKR-IGINLLRNTLLDLIEKTQ-TIESSPYLARERHIHSLNEANYYLSCAIKIINQS--EKNFEKN 433 (472)
Q Consensus 362 ~~----~~~i~vSA~~g-~gi~~L~~~l~~~~~~~~-~~~~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~ 433 (472)
.+ ...+++|+.++ .|+-+++......+.... .........+........++...|-+.+...+.. ++|++.
T Consensus 155 l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~- 233 (693)
T PRK00007 155 LGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEG- 233 (693)
T ss_pred hCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc-
Confidence 22 34678898877 344444432221111000 0000011112222333333333333333222111 345553
Q ss_pred hhHHHHHHHHHHHHH-----------hchhCCCCchhHHHHHhh
Q psy9409 434 LELIAEDLRFCHEKL-----------SSIIGKSTTNDLLDNIFS 466 (472)
Q Consensus 434 ~el~~~el~~a~~~l-----------~~i~g~~~~e~iLd~iF~ 466 (472)
.++..++++.+++.. |......+.+.+||.|..
T Consensus 234 ~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~ 277 (693)
T PRK00007 234 EELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVD 277 (693)
T ss_pred CCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHH
Confidence 255666766666643 112234566889998865
No 217
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=99.60 E-value=2.9e-15 Score=116.52 Aligned_cols=68 Identities=41% Similarity=0.621 Sum_probs=59.3
Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCC
Q psy9409 397 SPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFC 469 (472)
Q Consensus 397 ~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FC 469 (472)
+.++++.||+++|++|+.+|+.++..+..+ .++|+++++|+.|++.|++|||.+++|||||+||++||
T Consensus 6 ~~~l~~~Rq~~~L~~a~~~l~~a~~~l~~~-----~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~FC 73 (73)
T PF12631_consen 6 DPILTNARQRQLLEQALEHLEDALEALENG-----LPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNFC 73 (73)
T ss_dssp SSS--SHHHHHHHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS-
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhhC
Confidence 678999999999999999999999999877 78999999999999999999999999999999999999
No 218
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.60 E-value=8.9e-15 Score=157.17 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=109.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----e----------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----V----------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----v----------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 290 (472)
+|+|+|+.++|||||+++|+.....+ + ....|.|.......+.++++.+.||||||+.++
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF----- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF----- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-----
Confidence 69999999999999999998632111 1 113467777777788999999999999998887
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----c----cc-
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----N----IN- 359 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~----~~- 359 (472)
... ....++.+|++++|+|++.. .......++..+ ..+.|+++|+||+|+..... . +.
T Consensus 78 --~~e--------v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~ 146 (594)
T TIGR01394 78 --GGE--------VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAE 146 (594)
T ss_pred --HHH--------HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 333 33466789999999999875 233222233222 35789999999999865432 0 10
Q ss_pred -----ccCCCceEEEEeccCc----------cHHHHHHHHHHHhhcc
Q psy9409 360 -----YKNNIANIYLSASKRI----------GINLLRNTLLDLIEKT 391 (472)
Q Consensus 360 -----~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~~ 391 (472)
+...+|++++||++|. |++.|++.+.+.++.+
T Consensus 147 ~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 147 LGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred hccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 1235789999999996 8999999999988543
No 219
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.59 E-value=1.1e-14 Score=138.56 Aligned_cols=145 Identities=22% Similarity=0.267 Sum_probs=95.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce------e--c-----ccCceee------------------------eEEEEEEE
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI------V--T-----SIAGTTR------------------------DKITKTIQ 268 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~------v--~-----~~~gtt~------------------------d~~~~~~~ 268 (472)
||+++|+.++|||||+++|....+.. . . ...|.|. +.....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998643311 0 0 0011111 00012344
Q ss_pred eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccc--ccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEE
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVEL--KNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYV 345 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~--~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV 345 (472)
..+..+.++||||+..+ . ..+...+ ..+|++++|+|+..+. ......++..+ ..+.|+++|
T Consensus 81 ~~~~~i~liDtpG~~~~-------~--------~~~~~~~~~~~~D~~llVvda~~g~-~~~d~~~l~~l~~~~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHERY-------L--------KTTLFGLTGYAPDYAMLVVAANAGI-IGMTKEHLGLALALNIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHHH-------H--------HHHHHhhcccCCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEE
Confidence 56778999999998776 2 2223233 3699999999998763 33333333333 257899999
Q ss_pred EecCCCCcCcc------cccc-----------------------------cCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 346 WNKIDYSGHQK------NINY-----------------------------KNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 346 ~NK~Dl~~~~~------~~~~-----------------------------~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
+||+|+.+... .+.+ ...+|++.+||.+|.|+++|.+.|..
T Consensus 145 vNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 145 VTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 99999875432 1110 11248999999999999999988854
No 220
>KOG0097|consensus
Probab=99.59 E-value=6.9e-15 Score=124.59 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=113.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCce-eeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT-TRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gt-t~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
-+|..|+|.-|||||+|+..+..+.+. .+.|.| ..++-...+++.|. ++.+|||+|+..+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerf--------------- 73 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF--------------- 73 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHH---------------
Confidence 368999999999999999999998875 455543 45555666777665 6789999998887
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh---C-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---F-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
..-+..+++.+-..+.|+|++...+...+..++.. + .++..+++++||.||..... .+++..+.-++++
T Consensus 74 ravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~ 153 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEA 153 (215)
T ss_pred HHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEe
Confidence 33466789999999999999987655544444332 2 35667899999999987654 3555677889999
Q ss_pred EeccCccHHHHHHHHHHHh
Q psy9409 370 SASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~ 388 (472)
||++|.|+++.|-.-.+.+
T Consensus 154 saktg~nvedafle~akki 172 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred cccccCcHHHHHHHHHHHH
Confidence 9999999999886666655
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.58 E-value=1.2e-14 Score=150.07 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=107.0
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC------Ccc---------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS------DVA---------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~------~~~---------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+++|++++|||||+++|++. ... ......|+|.+.....+..++..+.|+||||+.++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 355689999999999999999999862 110 01125688888877777778889999999998766
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEE-EEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVI-YVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~pii-vV~NK~Dl~~~~~------- 356 (472)
+......+..+|++++|+|+.... .....+.+..+ ..+.|.+ +|+||+|+.+...
T Consensus 89 ---------------~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ 152 (396)
T PRK12735 89 ---------------VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred ---------------HHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHH
Confidence 334555677899999999998752 22222333332 2467855 5799999975322
Q ss_pred cc----ccc----CCCceEEEEeccCc----------cHHHHHHHHHHHhh
Q psy9409 357 NI----NYK----NNIANIYLSASKRI----------GINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~----~~~----~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~ 389 (472)
.+ ... ...+++++||++|. ++..|++.|...+.
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 11 111 13679999999984 67788888877653
No 222
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.58 E-value=4.6e-14 Score=144.79 Aligned_cols=157 Identities=22% Similarity=0.304 Sum_probs=109.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe---------------------C---CeeEEEEeCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI---------------------N---KFLFKITDTA 280 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~---------------------~---~~~i~liDTp 280 (472)
++|+|+|.||||||||+|+|++.+.. ++++|++|.+........ + ..++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 68999999999999999999998764 589999998887765432 1 2468999999
Q ss_pred CCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC-------------CCch----------H---------
Q psy9409 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD-------------KHTD----------F--------- 328 (472)
Q Consensus 281 G~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~-------------~~~~----------~--------- 328 (472)
|+... ....+.+ -.+.+..++++|++++|+|+... +... .
T Consensus 81 Gl~~g-------a~~g~gl-g~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~ 152 (396)
T PRK09602 81 GLVPG-------AHEGRGL-GNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKN 152 (396)
T ss_pred CcCCC-------ccchhhH-HHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 98764 2111222 12455678999999999999721 0000 0
Q ss_pred H--------------------------------HHHHHh----------------------CCCCCCEEEEEecCCCCcC
Q psy9409 329 D--------------------------------KKIIKN----------------------FPMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 329 ~--------------------------------~~il~~----------------------l~~~~piivV~NK~Dl~~~ 354 (472)
+ .++++. +...+|+++|+||+|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~ 232 (396)
T PRK09602 153 WEKFSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPA 232 (396)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccc
Confidence 0 001110 0134899999999997643
Q ss_pred cc---cccccCCCceEEEEeccCccHHH-HHHHHHHHhhc
Q psy9409 355 QK---NINYKNNIANIYLSASKRIGINL-LRNTLLDLIEK 390 (472)
Q Consensus 355 ~~---~~~~~~~~~~i~vSA~~g~gi~~-L~~~l~~~~~~ 390 (472)
.. .+.+....+++++||+.+.++++ +.+.+.+.++.
T Consensus 233 ~~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 233 EENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred hHHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 32 12222345699999999999999 88888888754
No 223
>KOG0393|consensus
Probab=99.58 E-value=5.7e-15 Score=135.13 Aligned_cols=148 Identities=17% Similarity=0.221 Sum_probs=113.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-Cee--EEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFL--FKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~--i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+|+++||..++|||+|+..+....+. ..+..|--|.....+.++ |.+ +.+|||+|+.++ +. ++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-------Dr-lR--- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-------DR-LR--- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCCCccc-------cc-cc---
Confidence 379999999999999999999988775 344445557777788884 754 689999999987 22 11
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch-----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD-----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------------------- 356 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~-----~~~~il~~l~~~~piivV~NK~Dl~~~~~------------------- 356 (472)
...+.++|++|++|++.++.+++ |+.++. ...++.|+|+|++|.||.+...
T Consensus 71 ----plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~-~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 71 ----PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIK-HHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred ----ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHH-hhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHH
Confidence 23778899999999999997765 444443 3348999999999999985431
Q ss_pred cccccCC-CceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 NINYKNN-IANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~~~~~-~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++..| ..++++||++..|++++|+......-
T Consensus 146 ~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 146 ELAKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 1233344 56999999999999999999888764
No 224
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.57 E-value=9.4e-15 Score=151.26 Aligned_cols=151 Identities=18% Similarity=0.122 Sum_probs=98.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEEE--------------------Ee------CCeeE
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKTI--------------------QI------NKFLF 274 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~~--------------------~~------~~~~i 274 (472)
..++|+++|++++|||||+++|.+.... ......|.|.+.-.... .. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3578999999999999999999764211 00111233322211100 00 14579
Q ss_pred EEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC-Cch--HHHHHHHhCCCCCCEEEEEecCCC
Q psy9409 275 KITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK-HTD--FDKKIIKNFPMNIPVIYVWNKIDY 351 (472)
Q Consensus 275 ~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~-~~~--~~~~il~~l~~~~piivV~NK~Dl 351 (472)
.+|||||+.++ .......+..+|++++|+|++++. ..+ ....+++.+ ...|+++|+||+|+
T Consensus 83 ~liDtPGh~~f---------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 83 SFVDAPGHETL---------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDL 146 (406)
T ss_pred EEEECCCHHHH---------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 99999998776 223444566799999999999753 111 111222222 23579999999999
Q ss_pred CcCcc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 352 SGHQK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 352 ~~~~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+... .+.+ ..+++++++||++|.|+++|+++|...+.
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 75432 1111 12568999999999999999999998764
No 225
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.57 E-value=3.6e-14 Score=134.24 Aligned_cols=149 Identities=23% Similarity=0.253 Sum_probs=107.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+++|.+..+.. ...++............. ..++.+|||+|+.++ . .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~--------~ 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------R--------S 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------H--------H
Confidence 799999999999999999999998864 333333444444443333 467899999998876 2 2
Q ss_pred hhhcccccccEEEEEEeCCCCCC-ch---HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------------cc------
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKH-TD---FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------------NI------ 358 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~-~~---~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------------~~------ 358 (472)
....++..++++++++|.+.... .+ .|...+.... ...|+++|+||+|+..... .+
T Consensus 70 ~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 70 LRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 24457889999999999998433 33 3443334333 4689999999999987642 00
Q ss_pred ---cccCCCceEEEEec--cCccHHHHHHHHHHHhh
Q psy9409 359 ---NYKNNIANIYLSAS--KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 359 ---~~~~~~~~i~vSA~--~g~gi~~L~~~l~~~~~ 389 (472)
.......++++|++ ++.++.+++..+...+.
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 00112338999999 99999999999988874
No 226
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=2.7e-14 Score=148.93 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=106.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC------CCccee---------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG------SDVAIV---------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v---------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+++|++++|||||+++|.+ ...... ...+|+|.+.....+..++..+.|+||||+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 35568999999999999999999973 221111 223789999988888888889999999998876
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~------- 356 (472)
+......+..+|++++|+|++.+. .....+.+..+ ..+.| +|+|+||+|+.+...
T Consensus 138 ---------------~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~ 201 (447)
T PLN03127 138 ---------------VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEM 201 (447)
T ss_pred ---------------HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHH
Confidence 333444556799999999998752 22233333333 25678 578999999975332
Q ss_pred cccc------c--CCCceEEEEec---cCcc-------HHHHHHHHHHHhh
Q psy9409 357 NINY------K--NNIANIYLSAS---KRIG-------INLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~~------~--~~~~~i~vSA~---~g~g-------i~~L~~~l~~~~~ 389 (472)
.+.+ . ...|++++||. +|.| +.+|++.+.+.+.
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1111 1 13678888875 5555 6788888877654
No 227
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=2.1e-14 Score=148.07 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=106.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc------c---------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV------A---------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~------~---------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~ 286 (472)
+..++|+++|++++|||||+++|++... . ......|+|.+.....+..++..+.|+||||+.++
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f- 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH-
Confidence 4568999999999999999999987310 0 01125688999887777778889999999998766
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEE-EEEecCCCCcCcc-------c
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVI-YVWNKIDYSGHQK-------N 357 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~pii-vV~NK~Dl~~~~~-------~ 357 (472)
+......+..+|++++|+|+..+. .....+++..+ ..+.|.+ +++||+|+.+... .
T Consensus 89 --------------~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~ 153 (396)
T PRK00049 89 --------------VKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEME 153 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHH
Confidence 334455678999999999998752 22222333222 2467875 6899999975322 1
Q ss_pred ccc--------cCCCceEEEEeccCc----------cHHHHHHHHHHHhh
Q psy9409 358 INY--------KNNIANIYLSASKRI----------GINLLRNTLLDLIE 389 (472)
Q Consensus 358 ~~~--------~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~ 389 (472)
+.. ....|++++||++|. |+..|++.|...+.
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 111 124689999999875 56778877777653
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=2.3e-14 Score=147.96 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=100.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC------Ccce---------ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS------DVAI---------VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~------~~~~---------v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~ 286 (472)
+..++|+++|+.++|||||+++|++. .... .....|+|.+.....+..++..+.||||||+.++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f- 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY- 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH-
Confidence 45589999999999999999999842 1110 1124688999877777777888999999998876
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEE-EEEecCCCCcCcc-------c
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVI-YVWNKIDYSGHQK-------N 357 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~pii-vV~NK~Dl~~~~~-------~ 357 (472)
+......+..+|++++|+|++.+.. ....+.+..+ ..+.|.+ +|+||+|+.+... .
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~ 153 (394)
T TIGR00485 89 --------------VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEME 153 (394)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 2233445578999999999987522 2222222222 2466755 6899999975432 1
Q ss_pred c----ccc----CCCceEEEEeccCc--------cHHHHHHHHHHH
Q psy9409 358 I----NYK----NNIANIYLSASKRI--------GINLLRNTLLDL 387 (472)
Q Consensus 358 ~----~~~----~~~~~i~vSA~~g~--------gi~~L~~~l~~~ 387 (472)
+ ... ..+|++++||++|. ++..+++.|.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 1 111 12789999999875 344555555443
No 229
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=1.7e-14 Score=151.76 Aligned_cols=144 Identities=21% Similarity=0.157 Sum_probs=100.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecc--------------------------------cCceeeeEEEEEEEe
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS--------------------------------IAGTTRDKITKTIQI 269 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~--------------------------------~~gtt~d~~~~~~~~ 269 (472)
+..++|+++|++++|||||+++|+.....+... ..|.|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 566899999999999999999998764433211 124556776777778
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc--hHHHHHHHhCCCCCCEEEEEe
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT--DFDKKIIKNFPMNIPVIYVWN 347 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~--~~~~~il~~l~~~~piivV~N 347 (472)
++..+.|+||||+.++ .......+..+|++++|+|+..+... .....+...+. ..|+++|+|
T Consensus 105 ~~~~i~~iDTPGh~~f---------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-~~~iIvvvN 168 (474)
T PRK05124 105 EKRKFIIADTPGHEQY---------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-IKHLVVAVN 168 (474)
T ss_pred CCcEEEEEECCCcHHH---------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-CCceEEEEE
Confidence 8889999999997665 22233346889999999999875221 12223333332 357899999
Q ss_pred cCCCCcCcc--------ccc---c----cCCCceEEEEeccCccHHHHH
Q psy9409 348 KIDYSGHQK--------NIN---Y----KNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 348 K~Dl~~~~~--------~~~---~----~~~~~~i~vSA~~g~gi~~L~ 381 (472)
|+|+..... .+. . ....+++++||++|.|++++.
T Consensus 169 KiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 169 KMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred eeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 999974322 111 1 124679999999999998754
No 230
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=2.4e-14 Score=148.20 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=99.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC--cceecccCceeeeEEEEEEEe------------------C--------Cee
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD--VAIVTSIAGTTRDKITKTIQI------------------N--------KFL 273 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~--~~~v~~~~gtt~d~~~~~~~~------------------~--------~~~ 273 (472)
+..++|+++|+.++|||||+.+|.+.. ...-....|.|.+.......+ + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 456899999999999999999997631 111111234554432111111 0 257
Q ss_pred EEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHH---HHHHhCCCCCCEEEEEecCC
Q psy9409 274 FKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 274 i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~---~il~~l~~~~piivV~NK~D 350 (472)
+.||||||+.++ +.........+|++++|+|++++....... .++... ...|+++|+||+|
T Consensus 87 i~liDtPG~~~f---------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~D 150 (411)
T PRK04000 87 VSFVDAPGHETL---------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKID 150 (411)
T ss_pred EEEEECCCHHHH---------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeec
Confidence 999999997766 333445566789999999999753111111 222222 2347899999999
Q ss_pred CCcCcc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 351 YSGHQK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 351 l~~~~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+.+... .+.. ..+.+++++||++|.|+++|++.|.+.+.
T Consensus 151 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 976432 1111 12468999999999999999999998774
No 231
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.55 E-value=1.9e-13 Score=136.50 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=109.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC------CCcceecccCceee-------------------eEEEEE-----------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAGTTR-------------------DKITKT----------- 266 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~gtt~-------------------d~~~~~----------- 266 (472)
..+.|+|.|+||+|||||++.|.. .....+...|.+.. ......
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 457899999999999999998653 22333232222210 000111
Q ss_pred ---------EEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC
Q psy9409 267 ---------IQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP 337 (472)
Q Consensus 267 ---------~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~ 337 (472)
+...|+.++|+||+|.+.. ... ....+|+++++.++..++... .+....
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs-------~~~-----------i~~~aD~vlvv~~p~~gd~iq---~~k~gi- 192 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQS-------ETA-----------VAGMVDFFLLLQLPGAGDELQ---GIKKGI- 192 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccc-------hhH-----------HHHhCCEEEEEecCCchHHHH---HHHhhh-
Confidence 1123578999999999976 222 244699999998744432221 111111
Q ss_pred CCCCEEEEEecCCCCcCcc------ccc------c----cCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccc
Q psy9409 338 MNIPVIYVWNKIDYSGHQK------NIN------Y----KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401 (472)
Q Consensus 338 ~~~piivV~NK~Dl~~~~~------~~~------~----~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~ 401 (472)
.....++|+||+|+..... .+. . .+..|++.+||++|.|+++|++.|.+++.+....+ .+.
T Consensus 193 ~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg---~l~ 269 (332)
T PRK09435 193 MELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG---EFA 269 (332)
T ss_pred hhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC---hHH
Confidence 1233489999999876432 111 0 12368999999999999999999999987543333 455
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy9409 402 RERHIHSLNEANYYLSCAIKI 422 (472)
Q Consensus 402 ~~r~~~~l~~~~~~l~~~~~~ 422 (472)
..|++.......+.+.+.+..
T Consensus 270 ~~r~~~~~~~v~elire~l~~ 290 (332)
T PRK09435 270 ARRREQQVDWMWEMVEEGLLD 290 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 232
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=4.1e-15 Score=126.85 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=71.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc---eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA---IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~---~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
||+++|++|||||||+++|++.... ...+..+.+.......+......+.+||++|.... ...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~------- 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF-------YSQ------- 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH-------HCT-------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee-------ccc-------
Confidence 7999999999999999999988765 11222333332222222223345899999998665 111
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh---C---CCCCCEEEEEecCC
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---F---PMNIPVIYVWNKID 350 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l---~~~~piivV~NK~D 350 (472)
....+..+|++++|+|.+++.++.....+++. + ..+.|+++|+||.|
T Consensus 67 -~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 -HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11236789999999999998665543333222 2 35699999999998
No 233
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.55 E-value=2.1e-14 Score=148.55 Aligned_cols=140 Identities=21% Similarity=0.182 Sum_probs=97.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec--------------------------------ccCceeeeEEEEEEEeCCe
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT--------------------------------SIAGTTRDKITKTIQINKF 272 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~--------------------------------~~~gtt~d~~~~~~~~~~~ 272 (472)
++|+++|++++|||||+++|+.....+.. ...|.|.|.....+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999754322111 1225668888888888899
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~D 350 (472)
.+.|+||||+.++ +......+..+|++++|+|++.+...+ ....+...+. ..++++|+||+|
T Consensus 81 ~~~liDtPGh~~f---------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-~~~iivviNK~D 144 (406)
T TIGR02034 81 KFIVADTPGHEQY---------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-IRHVVLAVNKMD 144 (406)
T ss_pred EEEEEeCCCHHHH---------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-CCcEEEEEEecc
Confidence 9999999998776 222334567899999999998762211 1222333332 346889999999
Q ss_pred CCcCcc--------ccc---c---cCCCceEEEEeccCccHHHH
Q psy9409 351 YSGHQK--------NIN---Y---KNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 351 l~~~~~--------~~~---~---~~~~~~i~vSA~~g~gi~~L 380 (472)
+..... .+. + ....+++++||++|.|++++
T Consensus 145 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 145 LVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 975332 111 1 12357999999999999863
No 234
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=2.1e-14 Score=141.55 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=82.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---------------CeeEEEEeCCCCCcccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---------------KFLFKITDTAGIPDINS 287 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---------------~~~i~liDTpG~~~~~~ 287 (472)
..+||+++|..|||||||+++|.+..+.. ...++...+.....+.++ .+.+.||||+|...+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf-- 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY-- 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCccc-ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh--
Confidence 34799999999999999999999887642 334444444444444443 246899999998876
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC----------------CCCCEEEEEecCCC
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP----------------MNIPVIYVWNKIDY 351 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~----------------~~~piivV~NK~Dl 351 (472)
.. ....+++++|++|+|+|+++..+++....+++.+. .+.|+++|+||+||
T Consensus 97 -----rs--------L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 97 -----KD--------CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred -----hh--------hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 22 23346889999999999999866653333332221 24799999999999
Q ss_pred CcC
Q psy9409 352 SGH 354 (472)
Q Consensus 352 ~~~ 354 (472)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 653
No 235
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=5.2e-14 Score=131.53 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=92.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecc----cCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS----IAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEK 298 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~----~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~ 298 (472)
+++|+++|++|+|||||+|+|++........ ...+|.... .+.. ....+.+|||||+.+. ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~-------~~~~~~ 71 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGST-------AFPPDD 71 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcc-------cCCHHH
Confidence 3689999999999999999999865421111 111232221 1111 1346899999999865 222222
Q ss_pred HhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----------c--------c-
Q psy9409 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------N--------I- 358 (472)
Q Consensus 299 ~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----------~--------~- 358 (472)
+ ++ ...+..+|++++|.|..-......+...++. .+.|+++|+||+|+..+.. . +
T Consensus 72 ~-l~--~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 146 (197)
T cd04104 72 Y-LE--EMKFSEYDFFIIISSTRFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCL 146 (197)
T ss_pred H-HH--HhCccCcCEEEEEeCCCCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHH
Confidence 1 11 1235788999998653311111233344443 3689999999999954211 0 0
Q ss_pred ---cc--cCCCceEEEEec--cCccHHHHHHHHHHHhh
Q psy9409 359 ---NY--KNNIANIYLSAS--KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 359 ---~~--~~~~~~i~vSA~--~g~gi~~L~~~l~~~~~ 389 (472)
.. ....+++.+|+. .+.|+..|.+.|...+.
T Consensus 147 ~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 147 ENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 00 122468888887 67888888888888764
No 236
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=1.1e-13 Score=133.66 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=91.0
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
....++|+++|++|||||||+|+|++.....++..+++|.........+++.++.+|||||+.+... ........
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~-----~~~~~~~~ 102 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVM-----DQRVNRKI 102 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchh-----hHHHHHHH
Confidence 4567899999999999999999999998877788888888887777888899999999999987610 11111111
Q ss_pred HHhhhccc--ccccEEEEEEeCCCCCCchHHHHHHH----hCCC--CCCEEEEEecCCCCcCcc
Q psy9409 301 IERTWVEL--KNSDIIIYVQDARYDKHTDFDKKIIK----NFPM--NIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 301 i~~~~~~~--~~aD~il~v~D~s~~~~~~~~~~il~----~l~~--~~piivV~NK~Dl~~~~~ 356 (472)
+.....++ ...|++++|...+..........+++ .++. -.++++|+||+|...+..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22222233 25789999976665422222222332 2322 257999999999976653
No 237
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.55 E-value=4.9e-14 Score=132.31 Aligned_cols=113 Identities=26% Similarity=0.387 Sum_probs=76.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEE--eCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQ--INKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~--~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
+|+++|++|||||||+++|....+.. ..+.++......... ..+..+.+|||||+..+ .. .
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~--------~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RD--------K 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHHH-------HH--------H
Confidence 68999999999999999999886532 233333322221221 23678999999998766 22 2
Q ss_pred hhcccccc-cEEEEEEeCCCC-CCch----HHHHHHHhC---CCCCCEEEEEecCCCCcCc
Q psy9409 304 TWVELKNS-DIIIYVQDARYD-KHTD----FDKKIIKNF---PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 304 ~~~~~~~a-D~il~v~D~s~~-~~~~----~~~~il~~l---~~~~piivV~NK~Dl~~~~ 355 (472)
...+++.+ +++|+|+|+++. .... ++..++... ....|+++|+||+|+....
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 33456677 999999999986 2222 333333222 2579999999999987643
No 238
>PRK12739 elongation factor G; Reviewed
Probab=99.54 E-value=4.2e-14 Score=155.66 Aligned_cols=135 Identities=19% Similarity=0.148 Sum_probs=96.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCc-----ceec------------ccCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDV-----AIVT------------SIAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~-----~~v~------------~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
.+|+|+|++|+|||||+|+|+.... ..+. ...|+|.+.....+.+++..++++||||+.++
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f-- 86 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF-- 86 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH--
Confidence 4799999999999999999975321 1122 25678899888999999999999999998766
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
...+...+..+|++|+|+|+..+. ......++..+ ..++|+++++||+|+..... .+.+.
T Consensus 87 -------------~~e~~~al~~~D~~ilVvDa~~g~-~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~ 152 (691)
T PRK12739 87 -------------TIEVERSLRVLDGAVAVFDAVSGV-EPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDR 152 (691)
T ss_pred -------------HHHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 223555778899999999998763 23333444333 35789999999999986542 12222
Q ss_pred CC----CceEEEEeccCc
Q psy9409 362 NN----IANIYLSASKRI 375 (472)
Q Consensus 362 ~~----~~~i~vSA~~g~ 375 (472)
.+ ...+++|+..+.
T Consensus 153 l~~~~~~~~iPis~~~~f 170 (691)
T PRK12739 153 LGANAVPIQLPIGAEDDF 170 (691)
T ss_pred hCCCceeEEecccccccc
Confidence 22 125788887654
No 239
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=4.2e-14 Score=123.39 Aligned_cols=133 Identities=26% Similarity=0.320 Sum_probs=88.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
||+++|++|+|||||+++|.+.+... ..|. .+.+.+ .++||||-.-. ...... ...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KTq-----~i~~~~---~~IDTPGEyiE------~~~~y~-----aLi 58 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQ-----AIEYYD---NTIDTPGEYIE------NPRFYH-----ALI 58 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----Cccc-----eeEecc---cEEECChhhee------CHHHHH-----HHH
Confidence 79999999999999999999977531 1122 122222 36999995432 011111 223
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCccc------ccccCCC-ceEEEEeccCccHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN------INYKNNI-ANIYLSASKRIGIN 378 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~------~~~~~~~-~~i~vSA~~g~gi~ 378 (472)
....+||++++|.|++++.. ..-..+.+. ..+|+|-|+||+|+...... +-+.-|+ ++|++|+.+|+|++
T Consensus 59 ~ta~dad~V~ll~dat~~~~-~~pP~fa~~--f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRS-VFPPGFASM--FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIE 135 (143)
T ss_pred HHHhhCCEEEEEecCCCCCc-cCCchhhcc--cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHH
Confidence 34568999999999998632 112233332 36899999999999943321 1112233 47999999999999
Q ss_pred HHHHHHH
Q psy9409 379 LLRNTLL 385 (472)
Q Consensus 379 ~L~~~l~ 385 (472)
+|.++|.
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9999885
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.54 E-value=3e-14 Score=155.54 Aligned_cols=142 Identities=23% Similarity=0.205 Sum_probs=97.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecc----------cC----------------------ceeeeEEEEEEEe
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS----------IA----------------------GTTRDKITKTIQI 269 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~----------~~----------------------gtt~d~~~~~~~~ 269 (472)
++.++|+++|++|+|||||+|+|+.....+++. .. |.|.|.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 455799999999999999999999866544321 23 3455555566777
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEe
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWN 347 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~N 347 (472)
++.++.|+||||+.++ .......+..+|++++|+|++.+.... ....++..+ ...|+++|+|
T Consensus 102 ~~~~~~liDtPG~~~f---------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvN 165 (632)
T PRK05506 102 PKRKFIVADTPGHEQY---------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVN 165 (632)
T ss_pred CCceEEEEECCChHHH---------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEE
Confidence 8889999999997765 222333567899999999998752211 222233333 2357889999
Q ss_pred cCCCCcCcc--------ccc---cc---CCCceEEEEeccCccHHH
Q psy9409 348 KIDYSGHQK--------NIN---YK---NNIANIYLSASKRIGINL 379 (472)
Q Consensus 348 K~Dl~~~~~--------~~~---~~---~~~~~i~vSA~~g~gi~~ 379 (472)
|+|+..... .+. .. ...+++++||++|.|+.+
T Consensus 166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 999974221 111 11 135699999999999985
No 241
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.54 E-value=6.1e-14 Score=150.71 Aligned_cols=143 Identities=26% Similarity=0.246 Sum_probs=93.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCc-eeeeEEEEEEEeC------C------------eeEEEEeCCCCCc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-TTRDKITKTIQIN------K------------FLFKITDTAGIPD 284 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-tt~d~~~~~~~~~------~------------~~i~liDTpG~~~ 284 (472)
.+.|+++|++|+|||||+|+|.+.... ...+| .|++.-....... + ..+.||||||+..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 356999999999999999999887653 33332 3333211111110 0 1278999999887
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC---CCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD---KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK----- 356 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~---~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~----- 356 (472)
+ ... ....+..+|++++|+|+++. .+...+. ++. ..+.|+++|+||+|+.....
T Consensus 84 f-------~~~--------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-~~~--~~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 84 F-------TNL--------RKRGGALADIAILVVDINEGFQPQTIEAIN-ILK--RRKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred H-------HHH--------HHHhHhhCCEEEEEEECCCCCCHhHHHHHH-HHH--HcCCCEEEEEECcCCchhhhhhcCc
Confidence 7 222 22355789999999999974 2222222 222 25789999999999852100
Q ss_pred --------------------------cccc--------------cCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 357 --------------------------NINY--------------KNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 357 --------------------------~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
.+.+ ....+++++||++|.|+++|++.+..
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000 12357999999999999999988764
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.53 E-value=8.2e-14 Score=146.10 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=99.5
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcc---------------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVA---------------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~---------------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+++|++++|||||+++|++.... .-....|.|.+.....+..++..+.|+||||+.++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 355689999999999999999999963211 11234578888888888888999999999998877
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~------- 356 (472)
+......+..+|++++|+|+..+.. ....+.+..+ ..++| +++++||+|+.+...
T Consensus 158 ---------------~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 158 ---------------VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred ---------------HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHH
Confidence 3334556678999999999987632 2222222222 24677 778999999976432
Q ss_pred c----ccc----cCCCceEEEEeccCccH
Q psy9409 357 N----INY----KNNIANIYLSASKRIGI 377 (472)
Q Consensus 357 ~----~~~----~~~~~~i~vSA~~g~gi 377 (472)
. +.. ....|++++||.+|.++
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 1 111 12568999999988543
No 243
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.52 E-value=8.2e-14 Score=131.78 Aligned_cols=111 Identities=24% Similarity=0.407 Sum_probs=74.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceec------------------ccCceeeeEEEEEEEeC-----CeeEEEEeCCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVT------------------SIAGTTRDKITKTIQIN-----KFLFKITDTAGI 282 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~------------------~~~gtt~d~~~~~~~~~-----~~~i~liDTpG~ 282 (472)
+|+++|++|+|||||+++|+.....+.. ...|.|.+.....+.+. .+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875443210 01123332222333222 367999999999
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCC
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~ 352 (472)
.++ . ......+..+|++++|+|+++..... ...+++.. ..+.|+++|+||+|+.
T Consensus 82 ~~f-------~--------~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-------M--------DEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch-------H--------HHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHcCCCEEEEEECcccC
Confidence 877 2 22445677899999999998764332 22222222 2468999999999986
No 244
>PTZ00258 GTP-binding protein; Provisional
Probab=99.51 E-value=1.5e-13 Score=139.59 Aligned_cols=92 Identities=30% Similarity=0.346 Sum_probs=74.4
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-----------------eeEEEEeCCCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----------------FLFKITDTAGIP 283 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-----------------~~i~liDTpG~~ 283 (472)
...+++|+|+|.||||||||+|+|.+... .++++|+||++.....+.+.+ .++.++||||+.
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 46778999999999999999999988775 679999999999888887653 248999999998
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s 321 (472)
.. ....+.++ .+.+..++++|++++|+|+.
T Consensus 97 ~g-------a~~g~gLg-~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KG-------ASEGEGLG-NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cC-------CcchhHHH-HHHHHHHHHCCEEEEEEeCC
Confidence 65 22223333 35667789999999999984
No 245
>KOG0462|consensus
Probab=99.50 E-value=1.2e-13 Score=140.78 Aligned_cols=152 Identities=24% Similarity=0.298 Sum_probs=118.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc--------------eecccCceeeeEEEEEEEeCC---eeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA--------------IVTSIAGTTRDKITKTIQINK---FLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~--------------~v~~~~gtt~d~~~~~~~~~~---~~i~liDTpG~~~~~~~ 288 (472)
+++|+-+..-|||||..+|+..... .+....|.|.-.....+.+.+ +.++++||||+.++
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF--- 138 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF--- 138 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc---
Confidence 6899999999999999998853221 133456888888777777776 88999999999999
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccc---
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINY--- 360 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~--- 360 (472)
..++++ .+..||.+|+|+|++++-..+....+...+..+..+|.|+||+|+..++. ++.+
T Consensus 139 ----s~EVsR--------slaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~ 206 (650)
T KOG0462|consen 139 ----SGEVSR--------SLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFD 206 (650)
T ss_pred ----cceehe--------hhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence 555444 66789999999999998444444455555567888999999999988764 2222
Q ss_pred cCCCceEEEEeccCccHHHHHHHHHHHhhccC
Q psy9409 361 KNNIANIYLSASKRIGINLLRNTLLDLIEKTQ 392 (472)
Q Consensus 361 ~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~ 392 (472)
....+++.+|||+|.|++++++++.+.++.+.
T Consensus 207 ~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 207 IPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred CCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 23446999999999999999999999996543
No 246
>PTZ00099 rab6; Provisional
Probab=99.50 E-value=2.2e-13 Score=125.00 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=87.0
Q ss_pred cCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch----H
Q psy9409 255 IAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD----F 328 (472)
Q Consensus 255 ~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~----~ 328 (472)
.|+...+.....+.+++ ..+.||||||...+ ... ...+++.+|++|+|+|++++.+++ +
T Consensus 10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~-------~~~--------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w 74 (176)
T PTZ00099 10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERF-------RSL--------IPSYIRDSAAAIVVYDITNRQSFENTTKW 74 (176)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHh-------hhc--------cHHHhCCCcEEEEEEECCCHHHHHHHHHH
Confidence 34444566666666665 56889999998776 221 234678999999999999976654 3
Q ss_pred HHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 329 DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 329 ~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+..+.+......|+++|+||+|+..... .+....+..++++||++|.|++++|++|.+.+..
T Consensus 75 ~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 75 IQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334333335688999999999964321 1223446678999999999999999999998854
No 247
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.49 E-value=1.3e-12 Score=130.04 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=92.3
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecC
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKI 349 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~ 349 (472)
.+++++|+||||.... . ...+..+|.++++.+.... +....+...+ ..+|.++|+||+
T Consensus 125 ~g~D~viidT~G~~~~-------e-----------~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS-------E-----------VDIANMADTFVVVTIPGTG---DDLQGIKAGL-MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCchh-------h-----------hHHHHhhceEEEEecCCcc---HHHHHHHHHH-hhhccEEEEEcc
Confidence 3678999999997754 1 1234568999888654432 2223333333 467889999999
Q ss_pred CCCcCcc----------ccc---c---cCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccccHHHHHHHHHHH
Q psy9409 350 DYSGHQK----------NIN---Y---KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEAN 413 (472)
Q Consensus 350 Dl~~~~~----------~~~---~---~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~ 413 (472)
|+..... .+. . .+..+++++||++|.|+++++++|.+.+... .+ ...+.+.||+++++++.
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~--~~-~~~l~~~R~~~~l~~a~ 259 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL--TA-SGLLQEKRRQRSVEWLK 259 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH--Hh-ccHHHHHHHHHHHHHHH
Confidence 9976532 001 1 1234699999999999999999999987644 23 56888999999999999
Q ss_pred HHHHHHHHHH
Q psy9409 414 YYLSCAIKII 423 (472)
Q Consensus 414 ~~l~~~~~~~ 423 (472)
..+++.+...
T Consensus 260 ~~l~~~l~~~ 269 (300)
T TIGR00750 260 KLVEEEVLKK 269 (300)
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 248
>KOG1707|consensus
Probab=99.49 E-value=5.4e-14 Score=144.51 Aligned_cols=183 Identities=21% Similarity=0.171 Sum_probs=124.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCcee-eeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT-RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt-~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
+..+||+++|..|+|||||+-+|+.+++. ...|..- +-.+...+..+..+..++||+.-.+. ...
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~--~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~-------~~~----- 72 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFV--DAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD-------RLC----- 72 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcc--ccccccCCccccCCccCcCcCceEEEecccccch-------hHH-----
Confidence 45689999999999999999999999874 3333211 11122334445678999999864443 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC---CCCCEEEEEecCCCCcCccc---------ccccCCC
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP---MNIPVIYVWNKIDYSGHQKN---------INYKNNI 364 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~---~~~piivV~NK~Dl~~~~~~---------~~~~~~~ 364 (472)
....+++||+++++++++++.+.+ .|..++++.. .+.|+|+|+||+|....... +.+...+
T Consensus 73 ---l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 73 ---LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI 149 (625)
T ss_pred ---HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence 234678899999999999875543 6777777775 78999999999999765532 1111222
Q ss_pred -ceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9409 365 -ANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCAIKIINQS 426 (472)
Q Consensus 365 -~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~ 426 (472)
.+++|||++-.++.++|....+.+-++..+- .....++.-.+|..+|.+++...+.+
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaVihPt~PL-----yda~~qelkp~~v~al~RIFki~D~d 207 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAVIHPTSPL-----YDAEEQELKPRCVKALKRIFKISDSD 207 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhheeeccCccc-----cccccccccHHHHHHHHHHHhhhccc
Confidence 3799999999999999999999885543221 12222334445556666666544444
No 249
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.48 E-value=3e-13 Score=143.66 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=80.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-----e----------cc------cCceeeeEEEEEEEeCCeeEEEEeCCCCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-----V----------TS------IAGTTRDKITKTIQINKFLFKITDTAGIP 283 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-----v----------~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~ 283 (472)
.+|+|+|++|+|||||+++|+.....+ + ++ ..|.|.......+.++++.+.+|||||+.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 589999999999999999997422110 0 11 11333444455678889999999999988
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~ 354 (472)
++ . ..+...++.+|++|+|+|+++.. ......+++.. ..+.|+++++||+|+...
T Consensus 91 df-------~--------~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 91 DF-------S--------EDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hh-------H--------HHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 77 2 22444677899999999998762 33334444433 268999999999998653
No 250
>KOG3883|consensus
Probab=99.48 E-value=5e-13 Score=115.05 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred hhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC---eeEEEEeCCCCCccccccccchhHH
Q psy9409 220 LIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK---FLFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 220 ~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
++-...||+++|.-++|||+++..|+..+...-++...|-.|.+...++-+. ..+.|.||+|+... .
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-------~--- 74 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-------Q--- 74 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-------h---
Confidence 4556789999999999999999999876655556666777888777776643 36899999998875 1
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc-------cccccCCC
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK-------NINYKNNI 364 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~ 364 (472)
.+.-..+++-+|++++||+..++++++....+-+.+ +..+|+++.+||+|+.++.. .|++....
T Consensus 75 ----~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkv 150 (198)
T KOG3883|consen 75 ----QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKV 150 (198)
T ss_pred ----hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhhe
Confidence 122445778899999999999998887544444444 25689999999999976553 35566677
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
..++++|.....+-+.|..+...+..+
T Consensus 151 kl~eVta~dR~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 151 KLWEVTAMDRPSLYEPFTYLASRLHQP 177 (198)
T ss_pred eEEEEEeccchhhhhHHHHHHHhccCC
Confidence 899999999999999999999887543
No 251
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.47 E-value=4.6e-13 Score=131.44 Aligned_cols=130 Identities=18% Similarity=0.274 Sum_probs=84.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecc--------cCce-eeeEEEEEEEeCC--eeEEEEeCCCCCccccccccch
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTS--------IAGT-TRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNI 293 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~--------~~gt-t~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 293 (472)
++|+++|++|+|||||+|+|++........ .+.| +.+.....+..+| ..+.+|||||+.+.... ....
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhhH
Confidence 689999999999999999999987754322 2222 3445555566666 46899999999875110 0000
Q ss_pred hHHH--------H-----HhHHh-hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 294 NEVE--------K-----IGIER-TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 294 ~~~e--------~-----~~i~~-~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
..+. . ..+.+ ....-.++|+++|+++.+......+..++++.+....|+++|+||+|+....
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHH
Confidence 0100 0 00111 1111235899999999886444455577777776679999999999997643
No 252
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=6.8e-13 Score=133.35 Aligned_cols=88 Identities=25% Similarity=0.348 Sum_probs=72.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-----------------eEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-----------------LFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-----------------~i~liDTpG~~~~~~ 287 (472)
++|+|+|.||||||||+|+|++.. +.++++|+||++.....+.+.+. ++.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~-- 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG-- 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC--
Confidence 789999999999999999999998 56799999999988877776552 4899999999865
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCC
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s 321 (472)
....+.++ .+.+..++++|++++|+|+.
T Consensus 80 -----a~~g~glg-~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 80 -----ASKGEGLG-NQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred -----CChHHHHH-HHHHHHHHhCCEEEEEEeCC
Confidence 33333333 45677889999999999985
No 253
>KOG4252|consensus
Probab=99.46 E-value=6.5e-15 Score=129.71 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=115.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+|++|+|..+|||||++.+++..-+.. +.......|..+..+.+. +..+.+|||+|+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTk-dykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------------- 82 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------------- 82 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccccc-ccccccchhhhhHHHHhhHHHHHHHHHHhccchhH---------------
Confidence 34899999999999999999999765532 333344556655555543 456789999998887
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
-..+..+++.|.+.++||+.++..+++...++.+.+ ...+|.++|-||+|+.+... .+.+.....++.+|
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtS 162 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTS 162 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhh
Confidence 223567899999999999999988887444444333 26899999999999987654 24445567789999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
++...|+..+|.+|.+.+
T Consensus 163 vked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 163 VKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhHHHHHHHHHHH
Confidence 999999999999998876
No 254
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=8.7e-13 Score=135.55 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---CeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---KFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+-|+++|+.--|||||+..+-+.+.+. ...-|.|.+.-...+.++ ...+.|+||||+..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF--------------- 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF--------------- 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH---------------
Confidence 3569999999999999999999988874 667789999888888884 468999999998876
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----c------ccccCC--Cce
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----N------INYKNN--IAN 366 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~------~~~~~~--~~~ 366 (472)
......-.+-+|++++|+|+.+.-..+ ..+-++.+ ..+.|+++..||+|..+.+. . ..+.++ ..+
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQ-TiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQ-TIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchh-HHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEE
Confidence 112223456799999999999973222 22222222 36899999999999987653 1 112222 468
Q ss_pred EEEEeccCccHHHHHHHHHHHh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+++||++|+|+++|++.+.-..
T Consensus 148 VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 148 VPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEeeccCCCCHHHHHHHHHHHH
Confidence 9999999999999999987653
No 255
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=2.2e-12 Score=126.60 Aligned_cols=125 Identities=20% Similarity=0.292 Sum_probs=84.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+.++|+++|.+|+||||++|+|++.+.+.++...+++..........+|.++.+|||||+.+. .. ......
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~-------~~-~~e~~~ 107 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG-------GY-INDQAV 107 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch-------HH-HHHHHH
Confidence 4568999999999999999999999988777777776665555556678999999999999875 21 111111
Q ss_pred Hhhh--cccccccEEEEEEeCCCCCCchH----HHHHHHhCC--CCCCEEEEEecCCCCcC
Q psy9409 302 ERTW--VELKNSDIIIYVQDARYDKHTDF----DKKIIKNFP--MNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 302 ~~~~--~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~--~~~piivV~NK~Dl~~~ 354 (472)
.... ..-...|++|||.+.+....... ...+.+.++ --.++|+|+|++|..++
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1111 12236999999966543222222 222222222 23579999999998754
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.44 E-value=6.1e-13 Score=138.95 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=98.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc------------------------------eecccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA------------------------------IVTSIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~------------------------------~v~~~~gtt~d~~~~~~~~~~ 271 (472)
+..++|+++|+.++|||||+.+|+...-. ......|.|.+.....+.+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34578999999999999999998752110 001234788888888888899
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC------chHHHHHHHhC-CCCCC-EE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH------TDFDKKIIKNF-PMNIP-VI 343 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~------~~~~~~il~~l-~~~~p-ii 343 (472)
..+.|+||||+.++ +......+..+|++++|+|++.+.. .....+.+..+ ..++| +|
T Consensus 85 ~~i~lIDtPGh~~f---------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRDF---------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMI 149 (446)
T ss_pred eEEEEEECCChHHH---------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEE
Confidence 99999999998877 4445556789999999999987521 11222222222 24666 67
Q ss_pred EEEecCCCCc--Cc-c-------cccc--------cCCCceEEEEeccCccHHH
Q psy9409 344 YVWNKIDYSG--HQ-K-------NINY--------KNNIANIYLSASKRIGINL 379 (472)
Q Consensus 344 vV~NK~Dl~~--~~-~-------~~~~--------~~~~~~i~vSA~~g~gi~~ 379 (472)
+++||+|... .. . .+.. ....+++++|+.+|.|+.+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999999532 11 1 1111 1246799999999999964
No 257
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.44 E-value=6.5e-13 Score=126.08 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=76.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccC---------------ceeeeEEEEEEEeC----------CeeEEEEeCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA---------------GTTRDKITKTIQIN----------KFLFKITDTA 280 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~---------------gtt~d~~~~~~~~~----------~~~i~liDTp 280 (472)
+|+++|+.++|||||+++|+.....+..... |.|.......+.+. ++.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999865432211111 22322222223333 6789999999
Q ss_pred CCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCC
Q psy9409 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 281 G~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~ 352 (472)
|+.++ .......++.+|++++|+|++.+... .+..+++.. ..+.|+++|+||+|+.
T Consensus 82 G~~~f---------------~~~~~~~l~~aD~~ilVvD~~~g~~~-~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF---------------SSEVTAALRLCDGALVVVDAVEGVCV-QTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc---------------HHHHHHHHHhcCeeEEEEECCCCCCH-HHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99988 23345577899999999999986433 334444333 3568999999999986
No 258
>KOG0070|consensus
Probab=99.43 E-value=8e-13 Score=118.19 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=110.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+..+|+++|--|+||||+++.|-..+... ..| |.......+.+.+..+.+||..|+... ..
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vt--tvP--TiGfnVE~v~ykn~~f~vWDvGGq~k~-------R~------- 76 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT--TVP--TIGFNVETVEYKNISFTVWDVGGQEKL-------RP------- 76 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCccc--CCC--ccccceeEEEEcceEEEEEecCCCccc-------cc-------
Confidence 355799999999999999999998887643 344 334445677788999999999998766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCC-CCCCEEEEEecCCCCcCcc--cc------ccc--CCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFP-MNIPVIYVWNKIDYSGHQK--NI------NYK--NNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~-~~~piivV~NK~Dl~~~~~--~~------~~~--~~~~~ 366 (472)
-...++++.+++|||+|.++.+......+ ++..-. ...|+++..||.|+..+-. .+ ... ....+
T Consensus 77 -lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 77 -LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred -chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEE
Confidence 24458899999999999999755443322 222222 5789999999999986643 11 111 22346
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
-.++|.+|+|+.+-++++.+.+.
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred eeccccccccHHHHHHHHHHHHh
Confidence 67899999999999999998774
No 259
>KOG1490|consensus
Probab=99.42 E-value=6.8e-13 Score=134.03 Aligned_cols=158 Identities=25% Similarity=0.277 Sum_probs=113.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.-.++++|.||||||||+|.+...+.. |.+++.||.....+++.+.-..++++||||+-+.. -.-.+.+|...+ .
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p---lEdrN~IEmqsI-T 242 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP---EEDRNIIEMQII-T 242 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcc---hhhhhHHHHHHH-H
Confidence 457999999999999999999988875 59999999999988888888899999999998750 011223333211 1
Q ss_pred hhcccccccEEEEEEeCCCCC--CchHHHHHHHhCC---CCCCEEEEEecCCCCcCcc----------cccccCCCceEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDK--HTDFDKKIIKNFP---MNIPVIYVWNKIDYSGHQK----------NINYKNNIANIY 368 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~--~~~~~~~il~~l~---~~~piivV~NK~Dl~~~~~----------~~~~~~~~~~i~ 368 (472)
+...+ -.+|||++|.|... +...-..++..+. .++|+|+|+||+|+..... .+.+..+.+++.
T Consensus 243 ALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 243 ALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence 22223 35699999998752 2222233333332 6899999999999987654 123344578999
Q ss_pred EEeccCccHHHHHHHHHHHh
Q psy9409 369 LSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~ 388 (472)
+|+.+.+|+-++....++.+
T Consensus 321 tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred ecccchhceeeHHHHHHHHH
Confidence 99999999988776655543
No 260
>PRK13351 elongation factor G; Reviewed
Probab=99.41 E-value=1e-12 Score=145.06 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=82.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-----------ecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-----------VTS------IAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-----------v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
.+|+|+|+.|+|||||+++|+.....+ +.+ ..+.|.......+.+++..+.+|||||+.++
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df-- 86 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF-- 86 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH--
Confidence 589999999999999999998532110 011 2344555556677888999999999998876
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~ 355 (472)
.. .+..+++.+|++++|+|+++..... ...++..+ ..+.|+++|+||+|+...+
T Consensus 87 -----~~--------~~~~~l~~aD~~ilVvd~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 87 -----TG--------EVERSLRVLDGAVVVFDAVTGVQPQ-TETVWRQADRYGIPRLIFINKMDRVGAD 141 (687)
T ss_pred -----HH--------HHHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHhcCCCEEEEEECCCCCCCC
Confidence 22 2444678899999999998864322 22222222 2578999999999998754
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.41 E-value=2e-12 Score=137.45 Aligned_cols=114 Identities=22% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcce-----e----------cc------cCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAI-----V----------TS------IAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~-----v----------~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
-.+|+|+|++|+|||||+++|+.....+ + ++ ..|.|.......+.++++.+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 3589999999999999999986422111 1 11 1134444555677888999999999998
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCc
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSG 353 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~ 353 (472)
.++ ...+...+..+|++|+|+|++.. .......+++.+. .+.|+++|+||+|+..
T Consensus 91 ~df---------------~~~~~~~l~~aD~aIlVvDa~~g-v~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 91 EDF---------------SEDTYRTLTAVDNCLMVIDAAKG-VETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhH---------------HHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 776 22345567889999999999875 2222233333222 5789999999999864
No 262
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=4.7e-12 Score=113.15 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=108.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCccee-----cc-cC---ceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIV-----TS-IA---GTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKN 292 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v-----~~-~~---gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~ 292 (472)
.+.||++.|+.++||||++.++......++ +. .. .||.-.-...+.+.+ ..+.|+||||+..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 357999999999999999999998764322 11 11 245444445555555 88999999999987
Q ss_pred hhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecCCCCcCcc--c----cccc-CC
Q psy9409 293 INEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKIDYSGHQK--N----INYK-NN 363 (472)
Q Consensus 293 ~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~Dl~~~~~--~----~~~~-~~ 363 (472)
.-.++- ..+.++.+++++|.+.+..+ ...+++..+. ...|+++..||.|+.+... . +... ..
T Consensus 82 ~fm~~~--------l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~ 152 (187)
T COG2229 82 KFMWEI--------LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLS 152 (187)
T ss_pred HHHHHH--------HhCCcceEEEEEecCCCcch-HHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCC
Confidence 333333 56779999999999998665 3333433332 2389999999999987754 1 1222 36
Q ss_pred CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 364 IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 364 ~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.|+++++|..++|..+.++.+....
T Consensus 153 ~~vi~~~a~e~~~~~~~L~~ll~~~ 177 (187)
T COG2229 153 VPVIEIDATEGEGARDQLDVLLLKD 177 (187)
T ss_pred CceeeeecccchhHHHHHHHHHhhc
Confidence 7899999999999999999888773
No 263
>KOG1145|consensus
Probab=99.40 E-value=3.4e-12 Score=130.21 Aligned_cols=151 Identities=23% Similarity=0.268 Sum_probs=114.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
.+.++-|-|+|+..-|||||+.+|-+...+. +..-|.|.+.-...+.+ +|..++|+||||+.-+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-------------- 214 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-------------- 214 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCcHHHH--------------
Confidence 3456779999999999999999999998875 67778888876666655 6789999999997776
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCccc------------ccccC-CCc
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKN------------INYKN-NIA 365 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~~------------~~~~~-~~~ 365 (472)
-.+...-...+|++++|+.+.++- ..+..+.++.. ..+.|+++.+||+|....+.. ..+.. +.+
T Consensus 215 -~aMRaRGA~vtDIvVLVVAadDGV-mpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 215 -SAMRARGANVTDIVVLVVAADDGV-MPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred -HHHHhccCccccEEEEEEEccCCc-cHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCcee
Confidence 122334566799999999999873 33333333333 368999999999998876531 11122 367
Q ss_pred eEEEEeccCccHHHHHHHHHHHh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++++||++|+|++.|.+.+.-+.
T Consensus 293 vipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEEeecccCCChHHHHHHHHHHH
Confidence 99999999999999999987664
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=2e-12 Score=135.09 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=98.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc------------------------------eecccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA------------------------------IVTSIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~------------------------------~v~~~~gtt~d~~~~~~~~~~ 271 (472)
+..++|+++|+.++|||||+-+|+..... ......|.|.+.....+.+++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 45678999999999999999998742110 001123677888777788889
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc------hHHHHHHHhC-CCCC-CEE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT------DFDKKIIKNF-PMNI-PVI 343 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~------~~~~~il~~l-~~~~-pii 343 (472)
+.+.++||||+.++ +......+..+|++|+|+|++..... ....+.+..+ ..+. +++
T Consensus 85 ~~i~liDtPGh~df---------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 85 YYCTVIDAPGHRDF---------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred EEEEEEECCCHHHH---------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 99999999998887 44456677899999999999974211 1222222211 2456 478
Q ss_pred EEEecCCCCcCc---c-------ccc---ccC-----CCceEEEEeccCccHHH
Q psy9409 344 YVWNKIDYSGHQ---K-------NIN---YKN-----NIANIYLSASKRIGINL 379 (472)
Q Consensus 344 vV~NK~Dl~~~~---~-------~~~---~~~-----~~~~i~vSA~~g~gi~~ 379 (472)
+++||+|+.... . .+. +.. ..+++++||++|.|+.+
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 899999986211 0 111 111 36799999999999854
No 265
>KOG0076|consensus
Probab=99.39 E-value=4e-13 Score=118.29 Aligned_cols=155 Identities=20% Similarity=0.155 Sum_probs=112.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceec----ccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT----SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~----~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
++.+.|+|+|.-|+|||||+.++-........ ..-.+|.-....++.+.+.++.+||.-|+... ...
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~l-------rSl-- 85 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESL-------RSL-- 85 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHH-------HHH--
Confidence 45688999999999999999987653221101 11134555666777888899999999998765 222
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHh-CCCCCCEEEEEecCCCCcCcc--cc------cc---c
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKN-FPMNIPVIYVWNKIDYSGHQK--NI------NY---K 361 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~-l~~~~piivV~NK~Dl~~~~~--~~------~~---~ 361 (472)
...++..++++++++|+++++.++. .+.++.. .-.+.|+++..||.|+.+... .+ .+ .
T Consensus 86 ------w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~ 159 (197)
T KOG0076|consen 86 ------WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPR 159 (197)
T ss_pred ------HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCC
Confidence 3347888999999999999755542 2222222 237899999999999987653 11 11 2
Q ss_pred CCCceEEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 362 NNIANIYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 362 ~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
..+++.+|||.+|+|+++-++++.+.+...
T Consensus 160 rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 346799999999999999999999988644
No 266
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.38 E-value=2.1e-12 Score=129.88 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=113.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce--------------ecccCceeeeEEEEEEEeC-----CeeEEEEeCCCCCccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI--------------VTSIAGTTRDKITKTIQIN-----KFLFKITDTAGIPDIN 286 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~--------------v~~~~gtt~d~~~~~~~~~-----~~~i~liDTpG~~~~~ 286 (472)
+..|+-+-.-|||||..+|+...... .....|.|.-.....+.+. .+.+.|+||||+.++
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF- 89 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF- 89 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce-
Confidence 57888999999999999998632211 2334577766666665552 367999999999998
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----ccccc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYK 361 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~ 361 (472)
.-++ ...+..|..+|+|+|++++-..+....+...+..+.-++.|+||+||..++. ++.+.
T Consensus 90 ------sYEV--------SRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~ 155 (603)
T COG0481 90 ------SYEV--------SRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDI 155 (603)
T ss_pred ------EEEe--------hhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHH
Confidence 2222 2256678999999999998444455566666678889999999999988764 34444
Q ss_pred CCC---ceEEEEeccCccHHHHHHHHHHHhhccC
Q psy9409 362 NNI---ANIYLSASKRIGINLLRNTLLDLIEKTQ 392 (472)
Q Consensus 362 ~~~---~~i~vSA~~g~gi~~L~~~l~~~~~~~~ 392 (472)
.|. ..+.+|||+|.|++++++.|.+.++.+.
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 444 3799999999999999999999996543
No 267
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.36 E-value=2.9e-12 Score=133.58 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=99.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCccee--cccCceeeeEEEEEE---------------Ee----------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIV--TSIAGTTRDKITKTI---------------QI---------------- 269 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v--~~~~gtt~d~~~~~~---------------~~---------------- 269 (472)
..++|+++|+...|||||+.+|.+.+.... ....|.|.+.-.... .+
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 457899999999999999999997543110 111122322111100 00
Q ss_pred --CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCCCCCCEEE
Q psy9409 270 --NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIY 344 (472)
Q Consensus 270 --~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~~~~piiv 344 (472)
-...+.|+||||+.++ +......+..+|++++|+|+..+.... ....++..+ .-.|+++
T Consensus 113 ~~~~~~i~~IDtPGH~~f---------------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIV 176 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL---------------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIII 176 (460)
T ss_pred ccccceEeeeeCCCHHHH---------------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEE
Confidence 0236899999998776 444556677899999999999742111 122233333 2346899
Q ss_pred EEecCCCCcCcc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 345 VWNKIDYSGHQK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 345 V~NK~Dl~~~~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
|+||+|+.+... .+.+ ....+++++||++|.|++.|++.|.+.+.
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 999999975332 1111 13578999999999999999999998664
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.34 E-value=3.1e-12 Score=140.84 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=93.6
Q ss_pred EecCCCchhHHHHhhhCCCccee-----------cc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccc
Q psy9409 230 IGQPNVGKSSLFNSLVGSDVAIV-----------TS------IAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKN 292 (472)
Q Consensus 230 vG~~nvGKSSLin~L~~~~~~~v-----------~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~ 292 (472)
+|++|+|||||+++|+.....+. .+ ..|.|.+.....+.++++.+.+|||||+.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 59999999999999965433211 11 2456667777788899999999999998765
Q ss_pred hhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cccccCCCce
Q psy9409 293 INEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYKNNIAN 366 (472)
Q Consensus 293 ~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~ 366 (472)
.. .....+..+|++++|+|++...... ...++..+ ..+.|+++|+||+|+..... .+.+..+.+.
T Consensus 74 ~~--------~~~~~l~~aD~vllvvd~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~ 144 (668)
T PRK12740 74 TG--------EVERALRVLDGAVVVVCAVGGVEPQ-TETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPV 144 (668)
T ss_pred HH--------HHHHHHHHhCeEEEEEeCCCCcCHH-HHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCc
Confidence 22 2344667899999999998864332 22222222 35789999999999876542 2333334332
Q ss_pred --EEEEeccCccHHHHHHHHHH
Q psy9409 367 --IYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 367 --i~vSA~~g~gi~~L~~~l~~ 386 (472)
..+....|.++..+.+.+..
T Consensus 145 ~~~~~p~~~~~~~~~~id~~~~ 166 (668)
T PRK12740 145 VPLQLPIGEGDDFTGVVDLLSM 166 (668)
T ss_pred eeEEecccCCCCceEEEECccc
Confidence 34455666666665554443
No 269
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.34 E-value=6.6e-12 Score=119.09 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=101.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC------CCcceecccCc--ee-----------------eeEEEEEEEe--------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAG--TT-----------------RDKITKTIQI-------- 269 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~g--tt-----------------~d~~~~~~~~-------- 269 (472)
+.+.|+|.|+||+|||||+++|.. ..+++..-.|. .| ....-....-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 457899999999999999999873 33333222221 11 1111122211
Q ss_pred ------------CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchH-HHHHHHhC
Q psy9409 270 ------------NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF-DKKIIKNF 336 (472)
Q Consensus 270 ------------~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~-~~~il~~l 336 (472)
-|+.++|+.|.|..+. .- ....-+|.+++|+-+...+..+. -.-+++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQs-------E~-----------~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-- 167 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQS-------EV-----------DIADMADTVVLVLVPGLGDEIQAIKAGIME-- 167 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTH-------HH-----------HHHTTSSEEEEEEESSTCCCCCTB-TTHHH--
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCcc-------HH-----------HHHHhcCeEEEEecCCCccHHHHHhhhhhh--
Confidence 2478999999999876 11 23456999999999887654331 122222
Q ss_pred CCCCCEEEEEecCCCCcCccc---------c----cccCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccccH
Q psy9409 337 PMNIPVIYVWNKIDYSGHQKN---------I----NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARE 403 (472)
Q Consensus 337 ~~~~piivV~NK~Dl~~~~~~---------~----~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~~~ 403 (472)
..-++|+||+|+...+.. + ...+.+|++.+||.+|.|+++|++.|.++..+..... .....
T Consensus 168 ---iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg---~~~~r 241 (266)
T PF03308_consen 168 ---IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESG---ELEER 241 (266)
T ss_dssp ---H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTT---HHHHH
T ss_pred ---hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcc---hHHHH
Confidence 235899999997655431 1 1123468999999999999999999999886543332 23344
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9409 404 RHIHSLNEANYYLSCAI 420 (472)
Q Consensus 404 r~~~~l~~~~~~l~~~~ 420 (472)
|+.+...+....+.+.+
T Consensus 242 r~~q~~~~~~~~~~~~l 258 (266)
T PF03308_consen 242 RREQARREMWELIEEEL 258 (266)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445554444433
No 270
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.33 E-value=1.6e-11 Score=123.15 Aligned_cols=151 Identities=24% Similarity=0.315 Sum_probs=115.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----e----------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----V----------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----v----------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 290 (472)
+|+|+-+..-|||||+..|+.+.-.. + ....|.|.=.....+.|+++.++++||||+-++
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF----- 81 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF----- 81 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc-----
Confidence 69999999999999999999753211 1 113366666666678899999999999999999
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHH-hCCCCCCEEEEEecCCCCcCccc------------
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIK-NFPMNIPVIYVWNKIDYSGHQKN------------ 357 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~-~l~~~~piivV~NK~Dl~~~~~~------------ 357 (472)
..++|+ .+.-.|.+++++|+..+ ...+.+.+++ .+..+.+-|+|+||+|...++..
T Consensus 82 --GGEVER--------vl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~ 150 (603)
T COG1217 82 --GGEVER--------VLSMVDGVLLLVDASEG-PMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE 150 (603)
T ss_pred --cchhhh--------hhhhcceEEEEEEcccC-CCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 788777 56778999999999987 3333344333 34567777899999999887641
Q ss_pred ---ccccCCCceEEEEeccCc----------cHHHHHHHHHHHhhccC
Q psy9409 358 ---INYKNNIANIYLSASKRI----------GINLLRNTLLDLIEKTQ 392 (472)
Q Consensus 358 ---~~~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~~~ 392 (472)
-.+..++|++..|++.|. ++..||+.|.++++.+.
T Consensus 151 L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 151 LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 123467899999998884 78999999999996543
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.8e-12 Score=124.35 Aligned_cols=144 Identities=22% Similarity=0.260 Sum_probs=105.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc------------------------e------ecccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA------------------------I------VTSIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~------------------------~------v~~~~gtt~d~~~~~~~~~~ 271 (472)
+..++++++|++.+|||||+-+|+.+--. - .....|.|.+.....++.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 35579999999999999999999852111 0 11244788888888888899
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc------h---HHHHHHHhCCCCCCE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT------D---FDKKIIKNFPMNIPV 342 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~------~---~~~~il~~l~~~~pi 342 (472)
+.+.++|+||++++ +........+||+.|+|+|++.++.. - .-..+.+.+ .-..+
T Consensus 85 ~~~tIiDaPGHrdF---------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~l 148 (428)
T COG5256 85 YNFTIIDAPGHRDF---------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQL 148 (428)
T ss_pred ceEEEeeCCchHHH---------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceE
Confidence 99999999999988 55666778899999999999987311 1 222233333 34568
Q ss_pred EEEEecCCCCcCcc-----------ccccc-----CCCceEEEEeccCccHHHHH
Q psy9409 343 IYVWNKIDYSGHQK-----------NINYK-----NNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 343 ivV~NK~Dl~~~~~-----------~~~~~-----~~~~~i~vSA~~g~gi~~L~ 381 (472)
|+++||+|+.+-++ .+.+. ...++++||+.+|.|+.+--
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 99999999987543 11111 14679999999999987654
No 272
>KOG1486|consensus
Probab=99.32 E-value=1.3e-11 Score=114.94 Aligned_cols=186 Identities=22% Similarity=0.303 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhh-hHH---hh-hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEE
Q psy9409 193 NKNDFFNELIKIKKKLLKIIQQGK-KRA---LI-RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTI 267 (472)
Q Consensus 193 ~~~~l~~~l~~l~~~l~~~~~~~~-~~~---~~-~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~ 267 (472)
....++.++.+.++++...-.... .+. .+ ...-+|+++|-|+||||||+..+.+..... ..+..||...+...+
T Consensus 26 HLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~Sea-A~yeFTTLtcIpGvi 104 (364)
T KOG1486|consen 26 HLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEA-ASYEFTTLTCIPGVI 104 (364)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhh-hceeeeEEEeecceE
Confidence 345566677777766554333221 111 11 123589999999999999999999876543 678899999999999
Q ss_pred EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--------------------
Q psy9409 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-------------------- 327 (472)
Q Consensus 268 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-------------------- 327 (472)
.++|..++++|.||+.+..+..+.. -+......+.||+++.|+|++..+...
T Consensus 105 ~y~ga~IQllDLPGIieGAsqgkGR--------GRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pn 176 (364)
T KOG1486|consen 105 HYNGANIQLLDLPGIIEGASQGKGR--------GRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPN 176 (364)
T ss_pred EecCceEEEecCcccccccccCCCC--------CceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCC
Confidence 9999999999999998763322111 122445677899999999998653210
Q ss_pred -------------------------HHHHHHH----------------------hC---CCCCCEEEEEecCCCCcCcc-
Q psy9409 328 -------------------------FDKKIIK----------------------NF---PMNIPVIYVWNKIDYSGHQK- 356 (472)
Q Consensus 328 -------------------------~~~~il~----------------------~l---~~~~piivV~NK~Dl~~~~~- 356 (472)
....++. .+ ....+++.|.||+|...-+.
T Consensus 177 iy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eev 256 (364)
T KOG1486|consen 177 IYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEV 256 (364)
T ss_pred eEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHH
Confidence 1111111 11 12457888999999776443
Q ss_pred -cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 -NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 -~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++ .+..+.+|+....|++.|++.|.+.+.
T Consensus 257 drlAr--~PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 257 DRLAR--QPNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred HHHhc--CCCcEEEEeccccCHHHHHHHHHHHhc
Confidence 2332 234688999999999999999999883
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.32 E-value=1.6e-11 Score=116.05 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=79.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec-ccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT-SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~-~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
++|+++|.+|+||||++|.|++.+..... .....|.........++|..+.++||||+.+.. ...+.+... +.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~----~~~~~~~~~-i~~ 75 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD----GSDEEIIRE-IKR 75 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETT----EEHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCc----ccHHHHHHH-HHH
Confidence 47999999999999999999999875433 234556666677778999999999999997751 112222222 222
Q ss_pred h-hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCC--CCCEEEEEecCCCCcCc
Q psy9409 304 T-WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPM--NIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 304 ~-~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~--~~piivV~NK~Dl~~~~ 355 (472)
. .......|++|+|++.......+ .+..+.+.++. -..+++|+|..|.....
T Consensus 76 ~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 76 CLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp HHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred HHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 2 23456799999999998442111 33333333432 24689999999876554
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.30 E-value=1.2e-10 Score=112.00 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=124.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC------CCcceecccC--cee---------------ee--EEEEEEE---------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIA--GTT---------------RD--KITKTIQ--------- 268 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~--gtt---------------~d--~~~~~~~--------- 268 (472)
+...|+|.|.||+|||||+.+|.. ..+++..-.| ..| .+ .......
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 345899999999999999999874 2232222122 111 01 1111111
Q ss_pred -----------eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC
Q psy9409 269 -----------INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP 337 (472)
Q Consensus 269 -----------~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~ 337 (472)
--|+.++|+.|.|..+. .-. ....+|.+++|.=+..++..+ -+..-+
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQs-------ev~-----------I~~~aDt~~~v~~pg~GD~~Q---~iK~Gi- 187 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQS-------EVD-----------IANMADTFLVVMIPGAGDDLQ---GIKAGI- 187 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcc-------hhH-----------HhhhcceEEEEecCCCCcHHH---HHHhhh-
Confidence 12478999999999986 222 334689999998766554322 221111
Q ss_pred CCCCEEEEEecCCCCcCcc-------c-------c-cccCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCccccc
Q psy9409 338 MNIPVIYVWNKIDYSGHQK-------N-------I-NYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLAR 402 (472)
Q Consensus 338 ~~~piivV~NK~Dl~~~~~-------~-------~-~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~~ 402 (472)
...--++|+||.|+..... . + ...+.+|++.+||.+|+|+++|++.+.++..+..... ....
T Consensus 188 mEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg---~~~~ 264 (323)
T COG1703 188 MEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG---LFTE 264 (323)
T ss_pred hhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc---cccc
Confidence 3445699999999766532 0 1 1134578999999999999999999999987654433 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcC
Q psy9409 403 ERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQF 468 (472)
Q Consensus 403 ~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~F 468 (472)
.|..+..+.....+...+....... ........++..++. .|+.++...-+.+|..|
T Consensus 265 ~rr~q~~~~~~~~v~~~v~~~~~~~----~~~k~~~~~~~~~v~-----~~e~~p~~aa~~ll~~~ 321 (323)
T COG1703 265 KRRTQYVEWIRTLVRDEVLDRLEAN----PAVKKVYADLEAAVR-----KGELDPYTAAQQLLEAI 321 (323)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcc----hhhhhhhHHHHHHHH-----hCCCChHHHHHHHHHHh
Confidence 5555566666655554443222210 122233333333332 45666665566665543
No 275
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=1.3e-11 Score=123.71 Aligned_cols=162 Identities=19% Similarity=0.321 Sum_probs=105.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC----Ccc-----------eecccCc---eeeeEEE---EEEEeC-----CeeEEE
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS----DVA-----------IVTSIAG---TTRDKIT---KTIQIN-----KFLFKI 276 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~----~~~-----------~v~~~~g---tt~d~~~---~~~~~~-----~~~i~l 276 (472)
..+-|+++|+.|+|||||+|+|.+. +.+ .+++.+| +|.|... ..+++. ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4478999999999999999999998 666 7788999 8888766 444442 158999
Q ss_pred EeCCCCCccccccc-----------------cchhHHHHHhHHhhhcccc-cccEEEEEE-eCCCC-----CCchHHHHH
Q psy9409 277 TDTAGIPDINSKIK-----------------KNINEVEKIGIERTWVELK-NSDIIIYVQ-DARYD-----KHTDFDKKI 332 (472)
Q Consensus 277 iDTpG~~~~~~~~~-----------------~~~~~~e~~~i~~~~~~~~-~aD~il~v~-D~s~~-----~~~~~~~~i 332 (472)
+||+|+.....-+. .|.+....+| +...+. ++|+.|+|. |.+-. .-.+....+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiG---T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIG---TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhh---HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 99999876411111 1111222222 344566 899999999 87521 112233445
Q ss_pred HHhCC-CCCCEEEEEecCC-CCcCcc----cccccCCCceEEEEecc--CccHHHHHHHHHHH
Q psy9409 333 IKNFP-MNIPVIYVWNKID-YSGHQK----NINYKNNIANIYLSASK--RIGINLLRNTLLDL 387 (472)
Q Consensus 333 l~~l~-~~~piivV~NK~D-l~~~~~----~~~~~~~~~~i~vSA~~--g~gi~~L~~~l~~~ 387 (472)
++.+. .++|+++|+||+| ..+... .+.+.++.|++++|+.. ...|..+++.+.-.
T Consensus 173 i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 173 IEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 55443 6899999999999 433322 23455678999999854 33444444444333
No 276
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.29 E-value=5.6e-12 Score=122.87 Aligned_cols=86 Identities=23% Similarity=0.321 Sum_probs=71.0
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-----------------eEEEEeCCCCCcccccc
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-----------------LFKITDTAGIPDINSKI 289 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-----------------~i~liDTpG~~~~~~~~ 289 (472)
|+|+|.||||||||+|+|++.+. .++++|+||++.....+.+.+. ++.++||||+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~---- 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG---- 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC----
Confidence 58999999999999999999988 6799999999998888887653 4999999999875
Q ss_pred ccchhHHHHHhHHhhhcccccccEEEEEEeCC
Q psy9409 290 KKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321 (472)
Q Consensus 290 ~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s 321 (472)
....+.+| .+.+..++++|++++|+|+.
T Consensus 76 ---a~~~~glg-~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 76 ---ASKGEGLG-NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ---CchhhHHH-HHHHHHHHhCCEEEEEEeCc
Confidence 33334443 34666788999999999975
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.29 E-value=1.5e-11 Score=117.21 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=85.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC-CcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS-DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~-~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+..|+++|++|+|||||+|.|++. ....++...|+. ......+..+.++||||...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~~~~~i~~vDtPg~~~--------------- 95 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTGKKRRLTFIECPNDIN--------------- 95 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEecCCceEEEEeCCchHH---------------
Confidence 345678999999999999999999875 222233344431 11223677899999998331
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCE-EEEEecCCCCcCcc-------cc----c--ccCCC
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPV-IYVWNKIDYSGHQK-------NI----N--YKNNI 364 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~pi-ivV~NK~Dl~~~~~-------~~----~--~~~~~ 364 (472)
.....++.+|++++|+|++.... .....++..+ ..+.|. ++|+||+|+..... .+ . ...+.
T Consensus 96 ---~~l~~ak~aDvVllviDa~~~~~-~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 96 ---AMIDIAKVADLVLLLIDASFGFE-METFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred ---HHHHHHHhcCEEEEEEecCcCCC-HHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCC
Confidence 12334577999999999987532 2233344433 245675 45999999974332 11 1 12356
Q ss_pred ceEEEEeccCc
Q psy9409 365 ANIYLSASKRI 375 (472)
Q Consensus 365 ~~i~vSA~~g~ 375 (472)
+++++||++..
T Consensus 172 ki~~iSa~~~~ 182 (225)
T cd01882 172 KLFYLSGIVHG 182 (225)
T ss_pred cEEEEeeccCC
Confidence 89999998874
No 278
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.8e-11 Score=121.41 Aligned_cols=90 Identities=26% Similarity=0.339 Sum_probs=72.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC------------------eeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK------------------FLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~------------------~~i~liDTpG~~~~ 285 (472)
.++++|||.||||||||+|+++... +...++|.+|.+.......+.. .++.|+|.||+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999999 4569999999998777665532 25899999999876
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
...-+.+| ++.+..++++|++++|+|++.
T Consensus 81 -------As~GeGLG-NkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 81 -------ASKGEGLG-NKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred -------cccCCCcc-hHHHHhhhhcCeEEEEEEecC
Confidence 33333333 246678899999999999874
No 279
>KOG0096|consensus
Probab=99.24 E-value=4.4e-11 Score=106.93 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=109.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEE--EEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITK--TIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~--~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++++++|..|.||||++++.+..++.. ...+.+..+...- .-..+..++..|||+|+... ..
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~-------gg------- 74 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK-------GG------- 74 (216)
T ss_pred eEEEEEecCCcccccchhhhhhccccee-cccCcceeEEeeeeeecccCcEEEEeeecccceee-------cc-------
Confidence 5799999999999999999999888863 3333333333222 22223378999999998876 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEec
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSAS 372 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~ 372 (472)
..-.++-++.++++++|++..-+.. |...+.+.+ .++|+++++||.|...... .+....++.++++||+
T Consensus 75 -lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSak 152 (216)
T KOG0096|consen 75 -LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAK 152 (216)
T ss_pred -cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccceeeecccceeEEeecc
Confidence 1223455678999999998763332 555555554 6799999999999876652 2334557789999999
Q ss_pred cCccHHHHHHHHHHHhhcc
Q psy9409 373 KRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~~~ 391 (472)
+..|++.-|-++.+.+...
T Consensus 153 sn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 153 SNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cccccccchHHHhhhhcCC
Confidence 9999999999999998543
No 280
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.24 E-value=2.8e-11 Score=109.63 Aligned_cols=112 Identities=25% Similarity=0.228 Sum_probs=71.6
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEE-------------------------------------------
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKI------------------------------------------- 263 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~------------------------------------------- 263 (472)
|+++|..++|||||+|+|+|.+...++..|.|..-..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999988655444443321100
Q ss_pred -----------EEE-EEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHH
Q psy9409 264 -----------TKT-IQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKK 331 (472)
Q Consensus 264 -----------~~~-~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~ 331 (472)
... .......+.|+||||+.+. ..... ..+..++..+|++|+|++++..........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~-------~~~~~----~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~ 149 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNST-------NSEHT----EITEEYLPKADVVIFVVDANQDLTESDMEF 149 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSS-------HTTTS----HHHHHHHSTTEEEEEEEETTSTGGGHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccc-------hhhhH----HHHHHhhccCCEEEEEeccCcccchHHHHH
Confidence 000 0001135889999999764 11111 225556789999999999998644444555
Q ss_pred HHHhCC-CCCCEEEEEecC
Q psy9409 332 IIKNFP-MNIPVIYVWNKI 349 (472)
Q Consensus 332 il~~l~-~~~piivV~NK~ 349 (472)
+.+... ....+++|.||+
T Consensus 150 l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 150 LKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHTTTCSSEEEEEE-G
T ss_pred HHHHhcCCCCeEEEEEcCC
Confidence 554443 445599999995
No 281
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.20 E-value=4.3e-11 Score=132.39 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=76.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce---------ecc------cCceeeeEEEE----EEEeCCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI---------VTS------IAGTTRDKITK----TIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~---------v~~------~~gtt~d~~~~----~~~~~~~~i~liDTpG~~~~ 285 (472)
.+|+++|+.++|||||+++|+.....+ +.+ ..++|.+.... .+.++++.+.+|||||+.++
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 589999999999999999997531110 001 13444443222 24567789999999999887
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcC
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~ 354 (472)
.. .....+..+|++|+|+|+..+-. .....+++.+ ..+.|.++|+||+|....
T Consensus 100 -------~~--------~~~~al~~aD~~llVvda~~g~~-~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 100 -------GG--------DVTRAMRAVDGAIVVVCAVEGVM-PQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred -------HH--------HHHHHHHhcCEEEEEEecCCCCC-ccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 22 24457788999999999987522 2222222222 356788999999998754
No 282
>PRK13768 GTPase; Provisional
Probab=99.20 E-value=5.5e-11 Score=115.37 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=69.7
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhccccc--ccEEEEEEeCCCCCCch-----HHHHHHHhCCCCCCEEEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN--SDIIIYVQDARYDKHTD-----FDKKIIKNFPMNIPVIYV 345 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~--aD~il~v~D~s~~~~~~-----~~~~il~~l~~~~piivV 345 (472)
.+.+|||||..+..+. ...... ....+.. ++++++|+|++...... .+.........+.|+++|
T Consensus 98 ~~~~~d~~g~~~~~~~----~~~~~~-----~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v 168 (253)
T PRK13768 98 DYVLVDTPGQMELFAF----RESGRK-----LVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPV 168 (253)
T ss_pred CEEEEeCCcHHHHHhh----hHHHHH-----HHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999998764110 111111 1112222 89999999997653221 111211222357999999
Q ss_pred EecCCCCcCccc------ccc-----------------------------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 346 WNKIDYSGHQKN------INY-----------------------------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 346 ~NK~Dl~~~~~~------~~~-----------------------------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||+|+...... +.. ....+++++|++++.|+++|+++|.+.+..
T Consensus 169 ~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred EEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 999999865430 110 112478999999999999999999998853
No 283
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.9e-10 Score=124.78 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=92.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-----ec------------ccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-----VT------------SIAGTTRDKITKTIQINK-FLFKITDTAGIPDIN 286 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-----v~------------~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~ 286 (472)
-+|+|+|+..+|||||..+|+...-.+ +. ...|.|......++.|.+ +.++++||||+.++
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF- 89 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF- 89 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcccc-
Confidence 479999999999999999998533211 11 123567777778888996 99999999999999
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC---chHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NI 358 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~---~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~ 358 (472)
..++++ .++-+|++++|+|+..+-. ...|+... ..+.|.++++||+|....+. .+
T Consensus 90 ------t~EV~r--------slrvlDgavvVvdaveGV~~QTEtv~rqa~---~~~vp~i~fiNKmDR~~a~~~~~~~~l 152 (697)
T COG0480 90 ------TIEVER--------SLRVLDGAVVVVDAVEGVEPQTETVWRQAD---KYGVPRILFVNKMDRLGADFYLVVEQL 152 (697)
T ss_pred ------HHHHHH--------HHHhhcceEEEEECCCCeeecHHHHHHHHh---hcCCCeEEEEECccccccChhhhHHHH
Confidence 555544 6788999999999998622 22343332 47899999999999987764 23
Q ss_pred cccCCCceEEEEe
Q psy9409 359 NYKNNIANIYLSA 371 (472)
Q Consensus 359 ~~~~~~~~i~vSA 371 (472)
....+.+...+..
T Consensus 153 ~~~l~~~~~~v~~ 165 (697)
T COG0480 153 KERLGANPVPVQL 165 (697)
T ss_pred HHHhCCCceeeec
Confidence 3344444444443
No 284
>KOG0074|consensus
Probab=99.19 E-value=5.1e-11 Score=101.43 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=106.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
+..+|+.++|-.|+|||||+..|.+++..-+.+..| +....+...| ..+.+||..|.+.. ...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G----Fn~k~v~~~g~f~LnvwDiGGqr~I-------Rpy----- 78 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG----FNTKKVEYDGTFHLNVWDIGGQRGI-------RPY----- 78 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCC----cceEEEeecCcEEEEEEecCCcccc-------chh-----
Confidence 566899999999999999999999998765444443 3345566666 78999999998876 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc--cccc--------cCCCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK--NINY--------KNNIA 365 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~--~~~~--------~~~~~ 365 (472)
..+++.+.|.+|||+|.++...++.. .++++..+ ...|+++..||.|+..... .++. ...+.
T Consensus 79 ---WsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswh 155 (185)
T KOG0074|consen 79 ---WSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWH 155 (185)
T ss_pred ---hhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEE
Confidence 34588999999999998876444422 22332222 5789999999999875432 1111 11234
Q ss_pred eEEEEeccCccHHHHHHHHHHHh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+-++||.+++|+..-.+++....
T Consensus 156 Iq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 156 IQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeeCccccccCccCcchhhhcCC
Confidence 66899999999999888887643
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=1.8e-10 Score=121.79 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceeccc-CceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI-AGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~-~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
-.++|+++|++|+||||++|.|++.....++.. ++||+ .......++|..+.++||||+.+... ........+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~-----dq~~neeIL 190 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSAS-----DQSKNEKIL 190 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCcccc-----chHHHHHHH
Confidence 346899999999999999999999987666654 45554 44445566889999999999998611 111111112
Q ss_pred Hhhhcccc--cccEEEEEEeCCCCCCch----HHHHHHHhCCC--CCCEEEEEecCCCCcC
Q psy9409 302 ERTWVELK--NSDIIIYVQDARYDKHTD----FDKKIIKNFPM--NIPVIYVWNKIDYSGH 354 (472)
Q Consensus 302 ~~~~~~~~--~aD~il~v~D~s~~~~~~----~~~~il~~l~~--~~piivV~NK~Dl~~~ 354 (472)
.....++. .+|++|+|...+...... .+..+.+.++. -..+|||+|..|..++
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 22222333 589999998876432221 22333333332 3568999999999864
No 286
>KOG0071|consensus
Probab=99.18 E-value=3.5e-10 Score=96.31 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=106.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+.+|-.++||||++..|.-.... ..+| |..+....+.+.+..+.+||..|.... ...
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~--~~ip--TvGFnvetVtykN~kfNvwdvGGqd~i-------Rpl------- 77 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKI-------RPL------- 77 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc--cccc--ccceeEEEEEeeeeEEeeeeccCchhh-------hHH-------
Confidence 4689999999999999999999877653 3333 333444677788999999999997665 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH-HHHHHhCC----CCCCEEEEEecCCCCcCcc--cc------cccCC--CceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD-KKIIKNFP----MNIPVIYVWNKIDYSGHQK--NI------NYKNN--IANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~-~~il~~l~----~~~piivV~NK~Dl~~~~~--~~------~~~~~--~~~i 367 (472)
...++....++|||+|..+.+..+.. .++.+.+. ...|+++..||.|+..+.. ++ ....+ +-+.
T Consensus 78 -WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vq 156 (180)
T KOG0071|consen 78 -WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQ 156 (180)
T ss_pred -HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEee
Confidence 44588899999999999886444322 22222222 4678999999999987654 22 22222 3467
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++||.+|.|+.+=+.+|...+
T Consensus 157 p~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 157 PSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccccchhHHHHHHHHHhhc
Confidence 899999999999999887754
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.17 E-value=1.5e-10 Score=128.40 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=75.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccC---------------ceeeeEEEEEEEe----CCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA---------------GTTRDKITKTIQI----NKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~---------------gtt~d~~~~~~~~----~~~~i~liDTpG~~~~ 285 (472)
-+|+++|+.++|||||+++|+.....+..... |.|.+.....+.+ +++.+.|+||||+.++
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 36999999999999999999865432211111 2333333333333 4678999999999887
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh-CCCCCCEEEEEecCCCCc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYVWNKIDYSG 353 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~-l~~~~piivV~NK~Dl~~ 353 (472)
.. .....++.+|++|+|+|+..+-. .....+++. ...+.|.++++||+|+..
T Consensus 101 -------~~--------~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 -------GG--------DVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred -------HH--------HHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 22 34446788999999999987622 222222222 234678899999999864
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.14 E-value=1.8e-10 Score=129.34 Aligned_cols=112 Identities=23% Similarity=0.283 Sum_probs=77.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCc---------------eeeeEEEEEEEe----------------CCee
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG---------------TTRDKITKTIQI----------------NKFL 273 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g---------------tt~d~~~~~~~~----------------~~~~ 273 (472)
.+|+|+|+.++|||||+++|+.....+.....+ .|.+.....+.+ +++.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 379999999999999999998765433222222 233322233333 2677
Q ss_pred EEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCC
Q psy9409 274 FKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 274 i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~ 352 (472)
+.|+||||+.++ +......++.+|++|+|+|+..+-. .....+++.+ ..++|+++++||+|+.
T Consensus 100 inliDtPGh~dF---------------~~e~~~al~~~D~ailVvda~~Gv~-~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDF---------------SSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHH---------------HHHHHHHHhhcCEEEEEEECCCCCc-ccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 899999999888 3334556788999999999998622 2222233322 4678999999999998
No 289
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.14 E-value=1.2e-10 Score=106.16 Aligned_cols=59 Identities=37% Similarity=0.513 Sum_probs=50.5
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
....++|+++|.||+|||||+|+|.+...+.+++.||+|++.....+ +..+.++||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 34568999999999999999999999998889999999998755443 246899999995
No 290
>KOG0461|consensus
Probab=99.13 E-value=4.9e-10 Score=108.77 Aligned_cols=152 Identities=24% Similarity=0.260 Sum_probs=103.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc------ceecccCceeeeEEEEEEEe---------CCeeEEEEeCCCCCcccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV------AIVTSIAGTTRDKITKTIQI---------NKFLFKITDTAGIPDINS 287 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~------~~v~~~~gtt~d~~~~~~~~---------~~~~i~liDTpG~~~~~~ 287 (472)
..++++++|+..+|||||..+|..-.. ...+...|.|.|.-...+.. +..++.++|.||+...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL-- 83 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL-- 83 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH--
Confidence 447999999999999999999975211 11233455666644433332 1235799999997765
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHH-HHHHHhCCCCCCEEEEEecCCCCcCccc---c-----
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD-KKIIKNFPMNIPVIYVWNKIDYSGHQKN---I----- 358 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~-~~il~~l~~~~piivV~NK~Dl~~~~~~---~----- 358 (472)
++......+-.|+.++|+|+..+-..+.. --++-++ .....++|+||+|..+..+. +
T Consensus 84 -------------IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-~c~klvvvinkid~lpE~qr~ski~k~~k 149 (522)
T KOG0461|consen 84 -------------IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-LCKKLVVVINKIDVLPENQRASKIEKSAK 149 (522)
T ss_pred -------------HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-hccceEEEEeccccccchhhhhHHHHHHH
Confidence 44455566678999999999876322211 1122222 34567899999998876431 1
Q ss_pred --cc------c-CCCceEEEEeccC----ccHHHHHHHHHHHhhc
Q psy9409 359 --NY------K-NNIANIYLSASKR----IGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 --~~------~-~~~~~i~vSA~~g----~gi~~L~~~l~~~~~~ 390 (472)
.+ . .+.|++++||+.| +++.+|.+.|...+..
T Consensus 150 k~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 150 KVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 11 1 2378999999999 8999999999998843
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.13 E-value=9.7e-10 Score=110.79 Aligned_cols=151 Identities=22% Similarity=0.274 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC-----CcceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS-----DVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~-----~~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
..++|+|+|.+|+|||||+|+|.|- ..+.++.. .||.+.... ..... .+++||.||++.. ....
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y--~~p~~pnv~lWDlPG~gt~-------~f~~ 103 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPY--PHPKFPNVTLWDLPGIGTP-------NFPP 103 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEE--E-SS-TTEEEEEE--GGGS-------S--H
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeC--CCCCCCCCeEEeCCCCCCC-------CCCH
Confidence 4479999999999999999999762 23333332 344444332 23333 5999999999865 2222
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCC--CcC-----cc--------c---
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDY--SGH-----QK--------N--- 357 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl--~~~-----~~--------~--- 357 (472)
+.+ .. ...+...|++|++.+..-. .....+.+.+ ..++|+.+|.||+|. ... .. .
T Consensus 104 ~~Y-l~--~~~~~~yD~fiii~s~rf~---~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 104 EEY-LK--EVKFYRYDFFIIISSERFT---ENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp HHH-HH--HTTGGG-SEEEEEESSS-----HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred HHH-HH--HccccccCEEEEEeCCCCc---hhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence 221 11 1246678988887664322 2222333333 268999999999996 111 00 0
Q ss_pred -----ccc--cCCCceEEEEecc--CccHHHHHHHHHHHhh
Q psy9409 358 -----INY--KNNIANIYLSASK--RIGINLLRNTLLDLIE 389 (472)
Q Consensus 358 -----~~~--~~~~~~i~vSA~~--g~gi~~L~~~l~~~~~ 389 (472)
+.+ ...+++|.||+.. ..++..|.+.|.+-++
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 111 2235688899765 4679999999998774
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.13 E-value=2e-10 Score=96.12 Aligned_cols=136 Identities=24% Similarity=0.264 Sum_probs=89.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
|++++|+.|+|||||+++|-|++... ..|. .++++. =-.+||||-.-. +..+ .....
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQ-----Ave~~d--~~~IDTPGEy~~-------~~~~----Y~aL~ 59 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQ-----AVEFND--KGDIDTPGEYFE-------HPRW----YHALI 59 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----cccc-----eeeccC--ccccCCchhhhh-------hhHH----HHHHH
Confidence 68999999999999999999987532 1111 122211 115899995533 1111 11223
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-c-----ccccCCCceEEEEeccCccHHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-N-----INYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-~-----~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
.....+|++++|-.+.++.+.- -..+. .+ ..+|+|-|++|+|+..... . +.+...-++|.+|+.+..|+++
T Consensus 60 tt~~dadvi~~v~~and~~s~f-~p~f~-~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRF-PPGFL-DI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred HHhhccceeeeeecccCccccC-Ccccc-cc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHH
Confidence 3467899999999999874311 11111 11 3567999999999995332 1 2223345799999999999999
Q ss_pred HHHHHHHH
Q psy9409 380 LRNTLLDL 387 (472)
Q Consensus 380 L~~~l~~~ 387 (472)
|++.|...
T Consensus 137 l~~~L~~~ 144 (148)
T COG4917 137 LVDYLASL 144 (148)
T ss_pred HHHHHHhh
Confidence 99998653
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.12 E-value=1.6e-10 Score=112.81 Aligned_cols=143 Identities=22% Similarity=0.175 Sum_probs=102.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceec--------------------------------ccCceeeeEEEEEEEe
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT--------------------------------SIAGTTRDKITKTIQI 269 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~--------------------------------~~~gtt~d~~~~~~~~ 269 (472)
+..+|++-+|...-|||||+-+|+....++.. ...|.|.|+....+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45579999999999999999999975433211 1236788998888888
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-HHHHHHHhCCCCCCEEEEEec
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~~piivV~NK 348 (472)
+..++++.||||+.++ .+....-...||++|+++|+..+-..+ .-..++..+-.-..+++.+||
T Consensus 84 ~KRkFIiADTPGHeQY---------------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGHEQY---------------TRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcHHHH---------------hhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEee
Confidence 8999999999998887 223334567899999999998762222 112222222234568999999
Q ss_pred CCCCcCcc-----------cccccCC---CceEEEEeccCccHHH
Q psy9409 349 IDYSGHQK-----------NINYKNN---IANIYLSASKRIGINL 379 (472)
Q Consensus 349 ~Dl~~~~~-----------~~~~~~~---~~~i~vSA~~g~gi~~ 379 (472)
+||.+-.+ .++...+ ..++++||..|.|+-.
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 99998665 1222222 3599999999999754
No 294
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=9.4e-10 Score=105.28 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceec-----ccCc----------------------------------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT-----SIAG---------------------------------------- 257 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~-----~~~g---------------------------------------- 257 (472)
.-++|+++|+.|+||||++++|.+..+...+ ..|.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3458999999999999999999987532111 1110
Q ss_pred -----eeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccc-cccEEEEEEeCCCCCCchHHH
Q psy9409 258 -----TTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELK-NSDIIIYVQDARYDKHTDFDK 330 (472)
Q Consensus 258 -----tt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~-~aD~il~v~D~s~~~~~~~~~ 330 (472)
.+.+.+.-.+.. +...+.|+||||+...... .. .......-.+....+++ ..+++|+|+|+...-......
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~-~~-~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVG-DQ-PPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccC-Cc-cHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 000011111111 1135899999999643100 01 12222222334666777 456999999987643333334
Q ss_pred HHHHhCC-CCCCEEEEEecCCCCcCc
Q psy9409 331 KIIKNFP-MNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 331 ~il~~l~-~~~piivV~NK~Dl~~~~ 355 (472)
++.+.+. .+.|+++|+||+|..+..
T Consensus 183 ~ia~~ld~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHcCCcEEEEEECCCCCCcc
Confidence 5665554 678999999999998654
No 295
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.12 E-value=7.2e-11 Score=107.67 Aligned_cols=113 Identities=22% Similarity=0.376 Sum_probs=65.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe---CCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI---NKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..|+|+|++|+|||+|+..|....... .. |.... ...+.+ .+.++.++|+||+... ....-.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~--T~--tS~e~-n~~~~~~~~~~~~~~lvD~PGH~rl-------r~~~~~--- 68 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP--TV--TSMEN-NIAYNVNNSKGKKLRLVDIPGHPRL-------RSKLLD--- 68 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-----B-----SSE-EEECCGSSTCGTCECEEEETT-HCC-------CHHHHH---
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC--ee--ccccC-CceEEeecCCCCEEEEEECCCcHHH-------HHHHHH---
Confidence 469999999999999999999874321 11 11111 112222 4568999999998876 332211
Q ss_pred HhhhcccccccEEEEEEeCCCCCC-----chHHHHHHHhC---CCCCCEEEEEecCCCCcC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKH-----TDFDKKIIKNF---PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~-----~~~~~~il~~l---~~~~piivV~NK~Dl~~~ 354 (472)
...+...+-++|||+|++.... .+.+..++... ....|++++.||.|+..+
T Consensus 69 --~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 69 --ELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp --HHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred --hhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1124677999999999874211 11223333222 367899999999998754
No 296
>PTZ00416 elongation factor 2; Provisional
Probab=99.11 E-value=2e-10 Score=128.78 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=77.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCce---------------eeeEEEEEEEeC----------CeeEEEEeC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT---------------TRDKITKTIQIN----------KFLFKITDT 279 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gt---------------t~d~~~~~~~~~----------~~~i~liDT 279 (472)
.+|+++|+.++|||||+++|+.....+.....|+ |.+.....+.+. ++.+.|+||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 3899999999999999999997554332223332 333222233443 567999999
Q ss_pred CCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCC
Q psy9409 280 AGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 280 pG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~ 352 (472)
||+.++ .......++.+|++|+|+|+..+- ......+++.+ ..+.|+++|+||+|+.
T Consensus 100 PG~~~f---------------~~~~~~al~~~D~ailVvda~~g~-~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDF---------------SSEVTAALRVTDGALVVVDCVEGV-CVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCHHhH---------------HHHHHHHHhcCCeEEEEEECCCCc-CccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999887 333455678899999999998862 22223333333 3568999999999997
No 297
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.11 E-value=2.6e-10 Score=102.50 Aligned_cols=57 Identities=33% Similarity=0.450 Sum_probs=48.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
.+++|+++|.||||||||+|+|.+.....+++.||+|++.... .. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI--TL-MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE--Ec-CCCEEEEECcCC
Confidence 4578999999999999999999999998999999999976433 23 235899999995
No 298
>KOG0072|consensus
Probab=99.11 E-value=1.7e-10 Score=98.54 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=105.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
...++.++|--|+||||++-++--.+.. +..|.... ....+.+.+.++.+||..|.... ...+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv--ttkPtigf--nve~v~yKNLk~~vwdLggqtSi-------rPyW------ 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV--TTKPTIGF--NVETVPYKNLKFQVWDLGGQTSI-------RPYW------ 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc--ccCCCCCc--CccccccccccceeeEccCcccc-------cHHH------
Confidence 3478999999999999999988766653 44443332 23556668899999999998776 3332
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc--------cccc--cCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK--------NINY--KNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~--------~~~~--~~~~~~i 367 (472)
..++.+.|.+|||+|.++.+... .+..++++-. .+..++++.||.|...... .+.+ ..-+.++
T Consensus 80 --RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv 157 (182)
T KOG0072|consen 80 --RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIV 157 (182)
T ss_pred --HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEE
Confidence 34788999999999999874322 2233332211 4577899999999865432 1111 1125689
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..||.+|+|+++.+++|.+.+.
T Consensus 158 ~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 158 KTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred eeccccccCCcHHHHHHHHHHh
Confidence 9999999999999999998774
No 299
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.11 E-value=6e-10 Score=125.34 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=90.6
Q ss_pred CchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC------------------eeEEEEeCCCCCccccccccchhHH
Q psy9409 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK------------------FLFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 235 vGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~------------------~~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
++||||+.+|.+.+.+. ...-|.|.+.-...+.++. ..+.||||||+..+ ..
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~-- 541 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TS-- 541 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HH--
Confidence 45999999999988754 5566777776555555431 12899999997765 11
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------------------
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------------------ 356 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------------------ 356 (472)
.....+..+|++++|+|++++-..+ ....+++. .+.|+++|+||+|+.+...
T Consensus 542 ------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~ 613 (1049)
T PRK14845 542 ------LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHA 613 (1049)
T ss_pred ------HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHH
Confidence 1223457799999999998742111 11222222 4689999999999963210
Q ss_pred --c-----------ccc--------------cCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 357 --N-----------INY--------------KNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 357 --~-----------~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
. +.+ ....+++++||++|+|+++|.+.|..
T Consensus 614 ~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 614 LTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 0 000 11357999999999999999998854
No 300
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.09 E-value=7.1e-10 Score=105.50 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=93.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
||+++|+.++||||+.+.+.++-.+.-+..-+.|.+.....+.. +..++.+||.||+... .+..- ....
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~-------~~~~~---~~~~ 70 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDF-------MENYF---NSQR 70 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCST-------THTTH---TCCH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccc-------ccccc---cccH
Confidence 79999999999999999999876544345556777777677764 5569999999999876 22210 0112
Q ss_pred hcccccccEEEEEEeCCCCCCch---HHHHHHHh---CCCCCCEEEEEecCCCCcCccc----------cc---ccCC--
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD---FDKKIIKN---FPMNIPVIYVWNKIDYSGHQKN----------IN---YKNN-- 363 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~---l~~~~piivV~NK~Dl~~~~~~----------~~---~~~~-- 363 (472)
...+++++++|||+|+...+..+ .....++. ..++..+-+.+.|+|+...... +. ...+
T Consensus 71 ~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~ 150 (232)
T PF04670_consen 71 EEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE 150 (232)
T ss_dssp HHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 23568899999999999543333 22333322 2478889999999999865530 11 1122
Q ss_pred -CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 364 -IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 364 -~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+.++.+|..+. .+-+.+..+.+.+
T Consensus 151 ~~~~~~TSI~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 151 DITFFLTSIWDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp SEEEEEE-TTST-HHHHHHHHHHHTT
T ss_pred ceEEEeccCcCc-HHHHHHHHHHHHH
Confidence 56888888774 6666666666655
No 301
>KOG1532|consensus
Probab=99.08 E-value=2.4e-10 Score=107.92 Aligned_cols=111 Identities=18% Similarity=0.274 Sum_probs=70.4
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhC----CCCCCEEEEE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNF----PMNIPVIYVW 346 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l----~~~~piivV~ 346 (472)
.+..++||||+.+..+-.. ...+ +-.++ .-...-++++|+|....... .+...++-.+ +...|+|+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSA--sGsI----Ite~l-ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvf 188 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSA--SGSI----ITETL-ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVF 188 (366)
T ss_pred cCEEEEcCCCceEEEEecC--Cccc----hHhhH-hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEE
Confidence 3588999999886411000 1111 11111 11235688899997654222 2333333322 3678999999
Q ss_pred ecCCCCcCcc-------------ccc-------------------c-cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 347 NKIDYSGHQK-------------NIN-------------------Y-KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 347 NK~Dl~~~~~-------------~~~-------------------~-~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
||+|+.+... .+. + ..+...+.||+.+|.|+++++..+.+.+.
T Consensus 189 NK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 189 NKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred ecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 9999988763 011 1 23567899999999999999999999884
No 302
>KOG1673|consensus
Probab=99.07 E-value=5.8e-10 Score=96.52 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=111.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||.++|++..|||||+-...+++... .............++.+.|. .+.+||..|.+++ +
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~---------------~ 83 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF---------------I 83 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceEEEEEEEecCCcHhh---------------h
Confidence 3699999999999999999999887632 23333445666677777765 5689999999987 4
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---C-CCCCEEEEEecCCCCcCcc------------cccccCCCc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---P-MNIPVIYVWNKIDYSGHQK------------NINYKNNIA 365 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~-~~~piivV~NK~Dl~~~~~------------~~~~~~~~~ 365 (472)
....-...++-+++|++|.+.+.+..-..++.++. . .-+| |+|++|-|+.-.-. ..++..+.+
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAs 162 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNAS 162 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 44556788899999999999986655444444443 2 2345 68999999743211 234566789
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++|+....|++++|+.+...+.
T Consensus 163 L~F~Sts~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 163 LFFCSTSHSINVQKIFKIVLAKLF 186 (205)
T ss_pred EEEeeccccccHHHHHHHHHHHHh
Confidence 999999999999999999888774
No 303
>KOG0090|consensus
Probab=99.06 E-value=4.5e-09 Score=96.14 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=98.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
+-.|.++|+.++|||+|+-.|...... ..-|........+.++...+.++|.||+... ...+..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl-------R~kl~e----- 101 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSRL-------RRKLLE----- 101 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHHH-------HHHHHH-----
Confidence 357999999999999999999887432 1123344455666677777999999998766 333322
Q ss_pred hhcccccccEEEEEEeCCCCCCc-----hHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------------------
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHT-----DFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK------------------- 356 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~-----~~~~~il~~l---~~~~piivV~NK~Dl~~~~~------------------- 356 (472)
....-..+-+++||+|....... +.+..++... ....|++++.||.|+..+..
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sR 181 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESR 181 (238)
T ss_pred HccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 11111378899999998754221 1223333222 46788999999999976542
Q ss_pred c------------------------cccc--CCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 357 N------------------------INYK--NNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 357 ~------------------------~~~~--~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
. +.+. ....+.+.|+++| +++++.+||.+.+
T Consensus 182 sa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 182 SALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 0001 1234788999988 8999999998753
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.06 E-value=2e-10 Score=110.17 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=58.7
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHH----hCCCCCCEEEEEe
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIK----NFPMNIPVIYVWN 347 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~----~l~~~~piivV~N 347 (472)
.+.++||||+.+.... .+.... +-..... ...=++++++|+...... .....++- .+..+.|.+.|+|
T Consensus 92 ~y~l~DtPGQiElf~~----~~~~~~--i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH----SDSGRK--IVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHHH----SHHHHH--HHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEEe----chhHHH--HHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 6899999999886211 222222 1112222 345688999998865331 12222111 1235899999999
Q ss_pred cCCCCcCcc--------------------------c----ccccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 348 KIDYSGHQK--------------------------N----INYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 348 K~Dl~~~~~--------------------------~----~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
|+|+.+... . +...... +++++|+++++|+++|+..+.+.++
T Consensus 165 K~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 165 KIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp -GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 999987220 0 1122234 7999999999999999999988764
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.03 E-value=1.3e-09 Score=106.99 Aligned_cols=131 Identities=22% Similarity=0.300 Sum_probs=77.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec-cc--------CceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccch
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT-SI--------AGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNI 293 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~-~~--------~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~ 293 (472)
++|+++|.+|+|||||+|.|++....... .. ...........+.-++. .+.++||||+++.-.- ....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhh
Confidence 68999999999999999999997654322 11 11222222233333444 5789999999865110 0000
Q ss_pred ----hHHH----H-----HhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 294 ----NEVE----K-----IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 294 ----~~~e----~-----~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
+.++ . ..+.+....-.+.|++||+++++.........+.++.+....++|.|+.|+|.....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEEEEEESTGGGS-HHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccccEEeEEecccccCHHH
Confidence 1111 1 0111111222468999999999876566677788888888899999999999987654
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.7e-09 Score=106.91 Aligned_cols=114 Identities=25% Similarity=0.325 Sum_probs=86.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce---------------ecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI---------------VTS------IAGTTRDKITKTIQINKFLFKITDTAGIPD 284 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~---------------v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~ 284 (472)
..+|+-+|.+|||||...|+--..++ +|+ ..|.+.....-+++++++.++|+||||+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 58999999999999999987321111 122 234455555677888999999999999999
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCc
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~ 355 (472)
+ -+.++..+..+|.+|.|+|+..+ ......++++-+. .+.|++-++||+|....+
T Consensus 94 F---------------SEDTYRtLtAvDsAvMVIDaAKG-iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 94 F---------------SEDTYRTLTAVDSAVMVIDAAKG-IEPQTLKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred c---------------chhHHHHHHhhheeeEEEecccC-ccHHHHHHHHHHhhcCCceEEEeeccccccCC
Confidence 8 23366677789999999999986 4555566666654 789999999999986554
No 307
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.99 E-value=1.7e-09 Score=101.14 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=50.5
Q ss_pred ccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--------cccc-cCCCceEEEEeccCccHHHHH
Q psy9409 311 SDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--------NINY-KNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 311 aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--------~~~~-~~~~~~i~vSA~~g~gi~~L~ 381 (472)
+|.++.|+|+.+...... .....+ ...-++|+||+|+.+... .... ..+.+++++||++|+|+++++
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi--~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI--TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh--hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 578999999987543211 101111 122389999999985311 1122 345789999999999999999
Q ss_pred HHHHHHh
Q psy9409 382 NTLLDLI 388 (472)
Q Consensus 382 ~~l~~~~ 388 (472)
++|.+.+
T Consensus 189 ~~i~~~~ 195 (199)
T TIGR00101 189 DWIEHYA 195 (199)
T ss_pred HHHHhhc
Confidence 9998865
No 308
>KOG0458|consensus
Probab=98.99 E-value=2.8e-09 Score=110.28 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=104.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC----------------------Ccc--------eecccCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS----------------------DVA--------IVTSIAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~----------------------~~~--------~v~~~~gtt~d~~~~~~~~~~~ 272 (472)
..+..+++|+.++|||||+-+|+.. .++ ......|.|.++....++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 5678999999999999999998741 010 0122347888888888888888
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc---------hHHHHHHHhCCCCCCEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT---------DFDKKIIKNFPMNIPVI 343 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~---------~~~~~il~~l~~~~pii 343 (472)
.++|+|+||+.++ +..+......||+.++|+|++..... .....+++.++ -..++
T Consensus 256 ~~tliDaPGhkdF---------------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qli 319 (603)
T KOG0458|consen 256 IVTLIDAPGHKDF---------------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLI 319 (603)
T ss_pred eEEEecCCCcccc---------------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEE
Confidence 9999999999998 44566677889999999999875211 13344555553 45689
Q ss_pred EEEecCCCCcCccc------------cccc-----CCCceEEEEeccCccHHHH
Q psy9409 344 YVWNKIDYSGHQKN------------INYK-----NNIANIYLSASKRIGINLL 380 (472)
Q Consensus 344 vV~NK~Dl~~~~~~------------~~~~-----~~~~~i~vSA~~g~gi~~L 380 (472)
+++||+|+....+. +.+. ....+++||+.+|+|+-..
T Consensus 320 vaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 320 VAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred EEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999999876641 1111 2347999999999998755
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.96 E-value=3.8e-09 Score=99.46 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=47.7
Q ss_pred ccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--------cccc-cCCCceEEEEeccCccHHHHH
Q psy9409 311 SDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--------NINY-KNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 311 aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--------~~~~-~~~~~~i~vSA~~g~gi~~L~ 381 (472)
.+..+.|+|+.+..... ...... ...|.++|+||+|+..... .+.+ ....+++++||++|.|+++++
T Consensus 124 ~~~~i~Vvd~~~~d~~~--~~~~~~--~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKP--LKYPGM--FKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred cCeEEEEEecCcccchh--hhhHhH--HhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 34556677776542211 111111 3467899999999975321 1111 234789999999999999999
Q ss_pred HHHHHH
Q psy9409 382 NTLLDL 387 (472)
Q Consensus 382 ~~l~~~ 387 (472)
+++.+.
T Consensus 200 ~~i~~~ 205 (207)
T TIGR00073 200 EFLEGQ 205 (207)
T ss_pred HHHHHh
Confidence 999875
No 310
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.2e-09 Score=105.49 Aligned_cols=148 Identities=24% Similarity=0.201 Sum_probs=113.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
-|+..|+---|||||+.++.+..-. .-....|+|.|.-...+..+++.+.|+|+||+.++ +..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~---------------i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF---------------ISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH---------------HHH
Confidence 4788899999999999999986532 22345689999988888888889999999999887 555
Q ss_pred hhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------ccc---ccCCCceEEEEec
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NIN---YKNNIANIYLSAS 372 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~---~~~~~~~i~vSA~ 372 (472)
....+...|.+++|+|++++-..+ ....+++.+ .....++|+||+|..+... .+. .....+++.+|++
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccc
Confidence 666778899999999997652222 223344444 3345699999999987542 111 1335678999999
Q ss_pred cCccHHHHHHHHHHHhh
Q psy9409 373 KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~ 389 (472)
+|.||++|.+.|.+...
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999999873
No 311
>KOG0077|consensus
Probab=98.95 E-value=1.1e-09 Score=95.97 Aligned_cols=147 Identities=19% Similarity=0.236 Sum_probs=103.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.++.-|++++|--|+|||||++.|-.+.... ..| |.+.....+.+.|.+++-+|..|+..-
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q--hvP--TlHPTSE~l~Ig~m~ftt~DLGGH~qA--------------- 77 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--HVP--TLHPTSEELSIGGMTFTTFDLGGHLQA--------------- 77 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccc--cCC--CcCCChHHheecCceEEEEccccHHHH---------------
Confidence 3455689999999999999999998776543 222 444555678899999999999996654
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---C--CCCCEEEEEecCCCCcCccc--------c---------
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---P--MNIPVIYVWNKIDYSGHQKN--------I--------- 358 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~--~~~piivV~NK~Dl~~~~~~--------~--------- 358 (472)
.+-...++..+|.+++++|+-+.+.+...+.-++.+ . ...|+++.+||+|...+... +
T Consensus 78 rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~ 157 (193)
T KOG0077|consen 78 RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGK 157 (193)
T ss_pred HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccc
Confidence 233556888999999999999876655333333222 1 57899999999999876430 0
Q ss_pred -cc-cCC---CceEEEEeccCccHHHHHHHHHH
Q psy9409 359 -NY-KNN---IANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 359 -~~-~~~---~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
.. ..+ ..++.||...+.|.-+-+.++..
T Consensus 158 v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 158 VNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred ccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 00 111 23678888888886666666544
No 312
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.1e-09 Score=103.81 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecc--cCceee--------------------eEEEEEEEeCC------eeE
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS--IAGTTR--------------------DKITKTIQINK------FLF 274 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~--~~gtt~--------------------d~~~~~~~~~~------~~i 274 (472)
..++|+++|+..-|||||..+|.|-.-..-+. ..+.|. ..........| ..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45799999999999999999999842111000 001110 00000011111 358
Q ss_pred EEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecCCCC
Q psy9409 275 KITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKIDYS 352 (472)
Q Consensus 275 ~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~Dl~ 352 (472)
.|+|.||+.-. +...+.-..-.|.+|+|+.++.+..+.+..+-+-.+. .-+.+++|-||+|+.
T Consensus 89 SfVDaPGHe~L---------------MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 89 SFVDAPGHETL---------------MATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred EEeeCCchHHH---------------HHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 89999997654 4444555666899999999998865554444333332 456799999999998
Q ss_pred cCccc------ccc------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 353 GHQKN------INY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 353 ~~~~~------~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
..+.. +.+ ..+.|++++||..+.||+-|+++|.+.+..
T Consensus 154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 87652 222 236799999999999999999999999954
No 313
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.94 E-value=3.1e-09 Score=105.17 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=51.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..+++++++|.||||||||+|+|.+.....+++.||+|++... +.++ ..+.++||||+...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPGi~~~ 179 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG-KGLELLDTPGILWP 179 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC-CcEEEEECCCcCCC
Confidence 4568999999999999999999999998888999999998753 3333 46899999999754
No 314
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.93 E-value=3.7e-09 Score=94.83 Aligned_cols=58 Identities=36% Similarity=0.520 Sum_probs=49.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
..+.+++++|.||+|||||+|+|++.....+++.++||++.....+ +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 3567899999999999999999999887778899999999866543 246899999995
No 315
>KOG4423|consensus
Probab=98.92 E-value=1e-10 Score=104.27 Aligned_cols=149 Identities=23% Similarity=0.209 Sum_probs=111.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe---eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF---LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~---~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+++.++|.-++||||++.+.+...+.. ........|.....+.|+.. ++.|||.+|++.+ -
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerf---------------g 89 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERF---------------G 89 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhh---------------c
Confidence 589999999999999999998877753 33334445555555566654 5689999999877 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC------C--CCCCEEEEEecCCCCcCcc--------cccccCCC-
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF------P--MNIPVIYVWNKIDYSGHQK--------NINYKNNI- 364 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l------~--~~~piivV~NK~Dl~~~~~--------~~~~~~~~- 364 (472)
..+.-+++.+.+..+|+|+++..+++-...+.+.+ + ...|+++..||||...... .+.+..+.
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 34667899999999999999987666444444433 2 3467899999999876432 22333443
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..+++|+|.+.+++|....+.+.+.
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHHH
Confidence 4899999999999999999998874
No 316
>KOG1487|consensus
Probab=98.90 E-value=1.3e-08 Score=95.58 Aligned_cols=154 Identities=22% Similarity=0.261 Sum_probs=110.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|.++|-|++|||||+..|.+... .|..+.+||--.+.....+++-++.+.|.||+.+.....+ .. -++..
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk-------gr-g~qvi 131 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK-------GR-GKQVI 131 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCC-------CC-ccEEE
Confidence 899999999999999999998765 3578889999888999999999999999999987611111 11 11234
Q ss_pred cccccccEEEEEEeCCCCCCc-----------------------------------------hHHHHHHHh---------
Q psy9409 306 VELKNSDIIIYVQDARYDKHT-----------------------------------------DFDKKIIKN--------- 335 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~-----------------------------------------~~~~~il~~--------- 335 (472)
...+.|+++++|+|+-.|-+. +....++.+
T Consensus 132 avartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~ 211 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIA 211 (358)
T ss_pred EEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchhee
Confidence 456789999999998665211 011111111
Q ss_pred -------------CC---CCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 336 -------------FP---MNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 336 -------------l~---~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+. ...|.+.++||+|-..-++.--....+..+++||-++.|++++++.+.+.+
T Consensus 212 Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 212 LRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eecCcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcc
Confidence 11 246899999999976654311112234589999999999999999999987
No 317
>KOG1144|consensus
Probab=98.90 E-value=4.3e-09 Score=110.78 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=100.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC------------------eeEEEEeCCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK------------------FLFKITDTAGI 282 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~------------------~~i~liDTpG~ 282 (472)
+|+++ ++|+|+...|||-|+..+.+.++.. +..-|+|...-...+...+ -.+.+|||||+
T Consensus 473 lRSPI-cCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPI-CCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred cCCce-EEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 44444 8999999999999999999987643 5555565543332222221 13789999998
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK----- 356 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~----- 356 (472)
..+ .+. .......||++|+|+|+.++- .....+-++.+ ..+.|+|+.+||+|.+-...
T Consensus 551 EsF-------tnl--------RsrgsslC~~aIlvvdImhGl-epqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 551 ESF-------TNL--------RSRGSSLCDLAILVVDIMHGL-EPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred hhh-------hhh--------hhccccccceEEEEeehhccC-CcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 887 221 223456799999999999872 22222222333 36899999999999753321
Q ss_pred --------------------------cccc----------c--C--CCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 357 --------------------------NINY----------K--N--NIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 357 --------------------------~~~~----------~--~--~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+++ . . .+.++++||.+|+||.+|+-+|.+..
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 0000 0 0 13478999999999999999988764
No 318
>KOG1954|consensus
Probab=98.89 E-value=4.6e-09 Score=102.97 Aligned_cols=121 Identities=26% Similarity=0.188 Sum_probs=86.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEEEEeCC-------------------------------
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKTIQINK------------------------------- 271 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~~~~~~------------------------------- 271 (472)
.-|.++|+-+.||||+++.|+..++. .+++.|+|.+-.......-.+
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 46999999999999999999998763 345566554433222111110
Q ss_pred --------eeEEEEeCCCCCccccccccchhHHHHHhHHhh-------hcccccccEEEEEEeCCCCCCchHHHHHHHhC
Q psy9409 272 --------FLFKITDTAGIPDINSKIKKNINEVEKIGIERT-------WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF 336 (472)
Q Consensus 272 --------~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~-------~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l 336 (472)
..+.++||||+-+. +...+++. ..+..++|.|+++||+...+..+...+++..+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsg-----------eKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL 207 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSG-----------EKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL 207 (532)
T ss_pred hcCChhhhhheeeeccCccccc-----------chhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh
Confidence 24889999998765 11112222 23567899999999999887777888888888
Q ss_pred C-CCCCEEEEEecCCCCcCcc
Q psy9409 337 P-MNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 337 ~-~~~piivV~NK~Dl~~~~~ 356 (472)
. ..-.+-+|+||+|..+..+
T Consensus 208 kG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 208 KGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred hCCcceeEEEeccccccCHHH
Confidence 5 5567889999999998876
No 319
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.89 E-value=3.4e-09 Score=98.32 Aligned_cols=57 Identities=40% Similarity=0.520 Sum_probs=46.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc--------ceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV--------AIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~--------~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
.+.+++++|.||||||||+|+|.+... ..++..||||++.....+.. .+.++||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 346899999999999999999998542 35688999999987665532 5799999996
No 320
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=6.1e-09 Score=102.45 Aligned_cols=60 Identities=35% Similarity=0.490 Sum_probs=50.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..++++++|.||||||||+|+|.+.....+++.||+|+.... +.++ ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS-DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC-CCEEEEECCCcccC
Confidence 467999999999999999999999988888999999998754 3333 36899999999643
No 321
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.87 E-value=8.3e-09 Score=94.12 Aligned_cols=58 Identities=38% Similarity=0.509 Sum_probs=49.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
..+++++++|.+|+|||||+|+|.+..+..+++.+++|.+.....+. ..+.++||||+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34579999999999999999999999887788999999987665443 56899999997
No 322
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.86 E-value=4.8e-09 Score=105.20 Aligned_cols=61 Identities=34% Similarity=0.448 Sum_probs=52.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
....+|+++|-||||||||||+|++...+.+++.||+|.+.....+.. .+.|+||||+...
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~ 190 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPP 190 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCC
Confidence 344789999999999999999999999999999999999876555433 4889999998865
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.86 E-value=1.5e-08 Score=98.93 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=38.0
Q ss_pred CCCEEEEEecCCCCcCcc--------cccc-cCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 339 NIPVIYVWNKIDYSGHQK--------NINY-KNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 339 ~~piivV~NK~Dl~~~~~--------~~~~-~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
..+-++|+||+|+.+... .+.. ....+++++||++|+|+++|.++|.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999986321 1222 2457899999999999999999998753
No 324
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=5.7e-09 Score=92.08 Aligned_cols=55 Identities=38% Similarity=0.582 Sum_probs=47.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~ 283 (472)
+++++|.+|+|||||+|+|++.....++..+|+|++... +.+++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence 799999999999999999999998778999999998654 34443 68999999975
No 325
>KOG0465|consensus
Probab=98.81 E-value=2.8e-08 Score=103.18 Aligned_cols=220 Identities=20% Similarity=0.170 Sum_probs=136.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----------------ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----------------VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----------------v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|++.-+--+||||+.++++....-+ .....|+|.........|..+.++++||||+.++
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF--- 117 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF--- 117 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE---
Confidence 58999999999999999987532211 1113355555656677788999999999999998
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC---CchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccc
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK---HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINY 360 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~---~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~ 360 (472)
.-++++ .++..|.+++|+|+..+- +...|++.. ..++|.+..+||+|...... .+..
T Consensus 118 ----T~EVeR--------ALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~---ry~vP~i~FiNKmDRmGa~~~~~l~~i~~ 182 (721)
T KOG0465|consen 118 ----TFEVER--------ALRVLDGAVLVLDAVAGVESQTETVWRQMK---RYNVPRICFINKMDRMGASPFRTLNQIRT 182 (721)
T ss_pred ----EEEehh--------hhhhccCeEEEEEcccceehhhHHHHHHHH---hcCCCeEEEEehhhhcCCChHHHHHHHHh
Confidence 444443 566778899999988762 222444433 36899999999999987764 2222
Q ss_pred cCCC--ceEEEEeccCccHHHHHHHHHHHh-hccCCCCCCc---ccccHHHHHHHHHHHHHHHHHHHHHhhc--ccccCC
Q psy9409 361 KNNI--ANIYLSASKRIGINLLRNTLLDLI-EKTQTIESSP---YLARERHIHSLNEANYYLSCAIKIINQS--EKNFEK 432 (472)
Q Consensus 361 ~~~~--~~i~vSA~~g~gi~~L~~~l~~~~-~~~~~~~~~~---~~~~~r~~~~l~~~~~~l~~~~~~~~~~--~~~~~~ 432 (472)
..+. -++.+-.....++..+.+.+.... .|.+... .. ...++.++....++.+.|-+.+...++. +.|+|.
T Consensus 183 kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g-~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee 261 (721)
T KOG0465|consen 183 KLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENG-EIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEE 261 (721)
T ss_pred hcCCchheeEccccccccchhHHhhhhceEEEEcCCCC-ceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc
Confidence 2222 255555555557777777776665 3333222 11 2234445555555555555555444332 234443
Q ss_pred chhHHHHHHHHHHHHH-----------hchhCCCCchhHHHHHh
Q psy9409 433 NLELIAEDLRFCHEKL-----------SSIIGKSTTNDLLDNIF 465 (472)
Q Consensus 433 ~~el~~~el~~a~~~l-----------~~i~g~~~~e~iLd~iF 465 (472)
.+...++|..|++.. |.-+-.....-+||.|-
T Consensus 262 -~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVv 304 (721)
T KOG0465|consen 262 -EEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVV 304 (721)
T ss_pred -CCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHH
Confidence 367788888888763 22223356667777663
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.80 E-value=5.6e-08 Score=96.18 Aligned_cols=132 Identities=16% Similarity=0.253 Sum_probs=85.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCccee----ccc-----CceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIV----TSI-----AGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKN 292 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v----~~~-----~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~ 292 (472)
.++|+++|+.|.|||||+|.|++...... ... ++.........+.-+|. .++++||||+++.- .....
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i-dNs~~ 101 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI-DNSKC 101 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc-ccccc
Confidence 36899999999999999999998733211 111 12222333333333454 57899999999861 11111
Q ss_pred hhHH--------HHH-----hHHhh-hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 293 INEV--------EKI-----GIERT-WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 293 ~~~~--------e~~-----~i~~~-~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
.+.+ +.. .+.+. ...=.+.|++||++.++.........++++.+.....+|-|+-|+|....++
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcccCeeeeeeccccCCHHH
Confidence 1111 111 11111 1122358999999999887666777888888888889999999999987654
No 327
>KOG2486|consensus
Probab=98.80 E-value=2.1e-08 Score=95.31 Aligned_cols=160 Identities=23% Similarity=0.206 Sum_probs=96.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcce--ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAI--VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~--v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++++++|.+|||||||+|.++...... .+..+|-|+.. ....-|..+.++|.||.....-.-..|.++..-
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~i---n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~-- 209 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAI---NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF-- 209 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceee---eeeeccceEEEEecCCcccccCCccCcchHhHh--
Confidence 44789999999999999999999865422 22255555533 222346689999999954320001122222211
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc--------cccc----------c
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK--------NINY----------K 361 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~--------~~~~----------~ 361 (472)
...+...-++-=.+.+++|++-+ ........++.++ .++|+.+|+||||...... .+.. .
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~-i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP-IQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC-CCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 11111111233345677788765 2222233334443 6899999999999865432 1111 1
Q ss_pred CCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 362 NNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 362 ~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
...|++.+|+.++.|+++|.-.+.+..
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccCCceeeecccccCceeeeeehhhhh
Confidence 135678899999999999987776654
No 328
>KOG1547|consensus
Probab=98.79 E-value=5.4e-08 Score=90.49 Aligned_cols=134 Identities=24% Similarity=0.305 Sum_probs=83.9
Q ss_pred hhCC--CEEEEEecCCCchhHHHHhhhCCCccee-------cccCceee-eEEEEEEEeCCe--eEEEEeCCCCCccccc
Q psy9409 221 IRNG--LNVVLIGQPNVGKSSLFNSLVGSDVAIV-------TSIAGTTR-DKITKTIQINKF--LFKITDTAGIPDINSK 288 (472)
Q Consensus 221 ~~~~--~~V~ivG~~nvGKSSLin~L~~~~~~~v-------~~~~gtt~-d~~~~~~~~~~~--~i~liDTpG~~~~~~~ 288 (472)
++.| |+|++||++|.|||||+|.|........ .++|.|+. ......+.-+|. +++++||||+++.-.
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn- 119 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN- 119 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-
Confidence 4555 5899999999999999999987543221 12333332 233333444554 578999999987500
Q ss_pred cccchhHHHHHhHHhhh------------ccc--ccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcC
Q psy9409 289 IKKNINEVEKIGIERTW------------VEL--KNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~------------~~~--~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~ 354 (472)
.....+.+.++-..... ..+ .+.++++|++.++.........++++.+..-..++-|+-|+|-..-
T Consensus 120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKADTLTL 199 (336)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhheeeeeEeecccccH
Confidence 00111122111111111 112 2488999999998775555677888888777789999999997654
Q ss_pred c
Q psy9409 355 Q 355 (472)
Q Consensus 355 ~ 355 (472)
+
T Consensus 200 e 200 (336)
T KOG1547|consen 200 E 200 (336)
T ss_pred H
Confidence 3
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.77 E-value=4.2e-08 Score=89.23 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=48.0
Q ss_pred EEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCccc--------c-cccCCCceEEEEeccCccHHHHHH
Q psy9409 313 IIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQKN--------I-NYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 313 ~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~~--------~-~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
.-++|+|++.++... . +--+ ....-++|+||.|+.+.-.. . .-....|++++|+++|+|++++++
T Consensus 120 ~~v~VidvteGe~~P--~---K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~ 194 (202)
T COG0378 120 LRVVVIDVTEGEDIP--R---KGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLR 194 (202)
T ss_pred eEEEEEECCCCCCCc--c---cCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHH
Confidence 778888888764211 0 0000 01135899999999875431 1 113567899999999999999999
Q ss_pred HHHHHh
Q psy9409 383 TLLDLI 388 (472)
Q Consensus 383 ~l~~~~ 388 (472)
++....
T Consensus 195 ~i~~~~ 200 (202)
T COG0378 195 FIEPQA 200 (202)
T ss_pred HHHhhc
Confidence 987653
No 330
>KOG1491|consensus
Probab=98.77 E-value=9.9e-09 Score=99.98 Aligned_cols=93 Identities=27% Similarity=0.394 Sum_probs=74.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-----------------eeEEEEeCCCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----------------FLFKITDTAGIPD 284 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-----------------~~i~liDTpG~~~ 284 (472)
.+.++++|||.||||||||+|+|...... ..++|.+|.|..+..+.+.. ..+.++|++|+..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35579999999999999999999999887 69999999999988877643 2589999999987
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
. ...-+.+| +..+..++.+|.++.|+++...
T Consensus 97 G-------As~G~GLG-N~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 97 G-------ASAGEGLG-NKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred C-------cccCcCch-HHHHHhhhhccceeEEEEecCc
Confidence 6 33333333 2456788999999999998653
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.9e-08 Score=93.35 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=102.0
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC----------c-----ceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD----------V-----AIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~----------~-----~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+.+|+.+-|||||..++...- + +.-....|.|.......++..+..+-.+|+||+.++
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 4566899999999999999999986411 1 111223377888877788888889999999999888
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCC-EEEEEecCCCCcCccc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP-VIYVWNKIDYSGHQKN------- 357 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~p-iivV~NK~Dl~~~~~~------- 357 (472)
++.......+.|..|+|+.+++...-+....++-.-.-+.| +++++||+|+.+....
T Consensus 89 ---------------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemE 153 (394)
T COG0050 89 ---------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEME 153 (394)
T ss_pred ---------------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHH
Confidence 44455566788999999999986332222222211123565 7788999999986541
Q ss_pred ----ccc--cC--CCceEEEEeccC-c-------cHHHHHHHHHHHhh
Q psy9409 358 ----INY--KN--NIANIYLSASKR-I-------GINLLRNTLLDLIE 389 (472)
Q Consensus 358 ----~~~--~~--~~~~i~vSA~~g-~-------gi~~L~~~l~~~~~ 389 (472)
+.. .. ..|++.-||..- + .|.+|++++.+.+.
T Consensus 154 vreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 154 VRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred HHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 111 12 356777776432 2 34666666666553
No 332
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.75 E-value=1.5e-08 Score=102.28 Aligned_cols=90 Identities=23% Similarity=0.227 Sum_probs=71.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-----------------eeEEEEeCCCCCcccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----------------FLFKITDTAGIPDINS 287 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-----------------~~i~liDTpG~~~~~~ 287 (472)
++++|+|.||+|||||+|+|++.....+.++|.||.+.....+.+.+ ..+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g-- 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG-- 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc--
Confidence 78999999999999999999999873568899999998888877755 25899999999875
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
...-+.+| .+.+..++.+|++++|+|+..
T Consensus 81 -----As~g~Glg-n~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 -----ASKGEGLG-NQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred -----hhcccCcc-hHHHHHHHhCCEEEEEEeCCC
Confidence 21112222 245667899999999999864
No 333
>KOG2655|consensus
Probab=98.70 E-value=8.4e-08 Score=95.64 Aligned_cols=132 Identities=19% Similarity=0.287 Sum_probs=85.8
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCccee------cccCceeeeEEEEEEEe--CCe--eEEEEeCCCCCcc--ccccccc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIV------TSIAGTTRDKITKTIQI--NKF--LFKITDTAGIPDI--NSKIKKN 292 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v------~~~~gtt~d~~~~~~~~--~~~--~i~liDTpG~~~~--~~~~~~~ 292 (472)
+.+.++|++|.|||||+|.|+..+..-- ...+..|.........+ +|. .++++||||+++. ++..-.|
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 6899999999999999999998754311 11222233333333333 454 5789999999875 1111111
Q ss_pred -----hhHHHHH-----hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 293 -----INEVEKI-----GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 293 -----~~~~e~~-----~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
....+.. ++.+....=.+.+++||++.++.........++++.+.....+|-|+-|+|......
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccccccceeeccccCCHHH
Confidence 1111111 112211112368999999999887666777888888888899999999999987764
No 334
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.65 E-value=1.1e-07 Score=85.29 Aligned_cols=57 Identities=33% Similarity=0.483 Sum_probs=45.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
...+++++|.+|+|||||+|+|.+.....+++.+|+|.+.. .+.. +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEc-CCCEEEEECcCC
Confidence 45789999999999999999999887777788889887643 2222 347899999995
No 335
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.63 E-value=8.4e-08 Score=97.89 Aligned_cols=59 Identities=36% Similarity=0.457 Sum_probs=47.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC-----cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD-----VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~-----~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+.+|.++|.+|||||||+|+|++.. ...++..||||++..... ++ ..+.++||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~~-~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--LD-DGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--eC-CCCEEEECCCCCCh
Confidence 4689999999999999999999853 356799999999876544 32 24679999999865
No 336
>PRK13796 GTPase YqeH; Provisional
Probab=98.62 E-value=6.8e-08 Score=98.71 Aligned_cols=59 Identities=37% Similarity=0.509 Sum_probs=46.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC-----CcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS-----DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~-----~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+.++.++|.||||||||+|+|++. +...++..||||++.....+. + ...++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC--C-CcEEEECCCcccc
Confidence 457999999999999999999854 234478999999998665442 2 2479999998653
No 337
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.62 E-value=5.9e-06 Score=85.33 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=83.0
Q ss_pred CEEEEEecCCCchhHHHHhhh------CCCcceecccCc-----------eee---eEEEEEE--E-------------e
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAG-----------TTR---DKITKTI--Q-------------I 269 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~g-----------tt~---d~~~~~~--~-------------~ 269 (472)
..|+++|++||||||++..|. +..+..++..+. ..+ .+..... + -
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999987 444444433221 001 1111000 0 0
Q ss_pred CCeeEEEEeCCCCCccccccccchh-HHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEe
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNIN-EVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWN 347 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~-~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~N 347 (472)
.++.++|+||||.... .. ..+. +.... ....+|.+++|+|++.+... ....+.+. .-.+.-+|+|
T Consensus 181 ~~~DvViIDTaGr~~~-------d~~lm~E--l~~i~-~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQ-------EDSLFEE--MLQVA-EAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSVDVGSVIIT 247 (429)
T ss_pred CCCCEEEEECCCCCcc-------hHHHHHH--HHHHh-hhcCCcEEEEEeccccChhH---HHHHHHHHhccCCcEEEEE
Confidence 2578999999996544 22 2222 22222 23467899999998865222 12222222 2235678999
Q ss_pred cCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 348 KIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 348 K~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
|.|...... .+....+.|+.+++ +|++++++..
T Consensus 248 KlD~~argG~aLs~~~~t~~PI~fig--~Ge~v~Dle~ 283 (429)
T TIGR01425 248 KLDGHAKGGGALSAVAATKSPIIFIG--TGEHIDDFEI 283 (429)
T ss_pred CccCCCCccHHhhhHHHHCCCeEEEc--CCCChhhcCc
Confidence 999865443 23345567777766 5666776643
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=98.60 E-value=4.2e-08 Score=99.29 Aligned_cols=57 Identities=32% Similarity=0.321 Sum_probs=45.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.++|+|+||||||||+|+|++.....++..++ ||++.... .+.+. ..|+||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC-cEEEeCCCcccc
Confidence 47999999999999999999988877888888 78877333 33221 279999999886
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.60 E-value=6.1e-08 Score=98.07 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=43.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.++++|+||||||||+|+|++.....+++.++ ||+......+.-++ .|+||||++++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 37999999999999999999988776777664 55544333332222 59999999987
No 340
>KOG0468|consensus
Probab=98.59 E-value=1.8e-07 Score=97.87 Aligned_cols=113 Identities=26% Similarity=0.349 Sum_probs=77.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec----------------ccCceeeeEEEEEEEeCC-----eeEEEEeCCCCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT----------------SIAGTTRDKITKTIQINK-----FLFKITDTAGIP 283 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~----------------~~~gtt~d~~~~~~~~~~-----~~i~liDTpG~~ 283 (472)
.+|+++|+-..|||+|+..|..+.....+ ...|.+......++-..+ +-++++||||+.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 37999999999999999999876432110 011223333333333322 358999999999
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~ 352 (472)
++ .++ +...++.+|++++|+|+..+-.....+-+...+..+.|+++|+||+|..
T Consensus 209 nF-------~DE--------~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NF-------SDE--------TTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cc-------hHH--------HHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 98 444 4447788999999999998754443333333346789999999999964
No 341
>KOG3886|consensus
Probab=98.57 E-value=1.3e-07 Score=87.67 Aligned_cols=140 Identities=17% Similarity=0.229 Sum_probs=98.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
-||.++|.+|+||||+=..+..+-.+.-...+|.|.|+...++.+-| .-+.+||..|+..+ ++......
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f----------men~~~~q 74 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF----------MENYLSSQ 74 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH----------HHHHHhhc
Confidence 47999999999999998887766655556678889998888877755 67899999997755 33332223
Q ss_pred hhcccccccEEEEEEeCCCCCCch---HHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------------cccccCCC
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------------NINYKNNI 364 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l---~~~~piivV~NK~Dl~~~~~-------------~~~~~~~~ 364 (472)
-...+++.+++++|+|++..+... ..+..++.+ .+...+.+.+.|+|+...+. .++...++
T Consensus 75 ~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~ 154 (295)
T KOG3886|consen 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLEC 154 (295)
T ss_pred chhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccc
Confidence 345678899999999999764322 333333333 25666899999999987653 12223345
Q ss_pred ceEEEEeccC
Q psy9409 365 ANIYLSASKR 374 (472)
Q Consensus 365 ~~i~vSA~~g 374 (472)
.++++|..+.
T Consensus 155 ~~f~TsiwDe 164 (295)
T KOG3886|consen 155 KCFPTSIWDE 164 (295)
T ss_pred cccccchhhH
Confidence 6777776543
No 342
>KOG0448|consensus
Probab=98.57 E-value=3.5e-07 Score=96.45 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=75.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEE-------------------------------------
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKI------------------------------------- 263 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~------------------------------------- 263 (472)
.+...||+|.|.+++||||++|+++.++... +..-.||.-+.
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 4567899999999999999999999876543 22111221000
Q ss_pred ------EEEEEeC-C------eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHH
Q psy9409 264 ------TKTIQIN-K------FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK 330 (472)
Q Consensus 264 ------~~~~~~~-~------~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~ 330 (472)
-..+.|. + -.+.++|.||+.-.. .-..+ .......+|++|+|+.+.+..+ ....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----e~tsw--------id~~cldaDVfVlV~NaEntlt-~sek 251 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----ELTSW--------IDSFCLDADVFVLVVNAENTLT-LSEK 251 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCch----hhhHH--------HHHHhhcCCeEEEEecCccHhH-HHHH
Confidence 0111111 1 158899999988640 00222 2336778999999999887532 2334
Q ss_pred HHHHhCCCCCC-EEEEEecCCCCcCcc
Q psy9409 331 KIIKNFPMNIP-VIYVWNKIDYSGHQK 356 (472)
Q Consensus 331 ~il~~l~~~~p-iivV~NK~Dl~~~~~ 356 (472)
.++......+| ++++.||+|......
T Consensus 252 ~Ff~~vs~~KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 252 QFFHKVSEEKPNIFILNNKWDASASEP 278 (749)
T ss_pred HHHHHhhccCCcEEEEechhhhhcccH
Confidence 44544443455 677778889876643
No 343
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.56 E-value=1.1e-07 Score=90.63 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC--CcceecccCceeeeEEEEEEEe---CCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS--DVAIVTSIAGTTRDKITKTIQI---NKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~--~~~~v~~~~gtt~d~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.|+|+|++++|||||+|.|++. .+......+.+|+........+ .+..+.++||||+.+. ......
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~-------~~~~~~-- 79 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR-------ERGEFE-- 79 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc-------ccCchh--
Confidence 5789999999999999999999 7776666778888777666555 3578999999999875 110000
Q ss_pred HHhhhcccc--cccEEEEEEeCCCC
Q psy9409 301 IERTWVELK--NSDIIIYVQDARYD 323 (472)
Q Consensus 301 i~~~~~~~~--~aD~il~v~D~s~~ 323 (472)
.......+. -+|++|+..+....
T Consensus 80 ~~~~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 80 DDARLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred hhhHHHHHHHHHhCEEEEeccCccc
Confidence 111222223 48999999887654
No 344
>KOG0464|consensus
Probab=98.56 E-value=1.3e-07 Score=93.94 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=85.9
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----------------ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----------------VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----------------v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|+++.+-.+||||...+++....++ .....|.|.......++|.|+++.++||||+.++
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf--- 115 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF--- 115 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE---
Confidence 68999999999999999987532211 1224467788888899999999999999999998
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC---chHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH---TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~---~~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
.-++|+ .++..|.++.|+|++.+-. ...|.+- -+.+.|-++.+||+|......
T Consensus 116 ----~lever--------clrvldgavav~dasagve~qtltvwrqa---dk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 116 ----RLEVER--------CLRVLDGAVAVFDASAGVEAQTLTVWRQA---DKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred ----EEEHHH--------HHHHhcCeEEEEeccCCcccceeeeehhc---cccCCchhhhhhhhhhhhhhh
Confidence 555554 5667899999999997632 2244432 246889999999999877654
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=4.7e-06 Score=83.45 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=84.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccCce--------------eeeEEEEEE---------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGT--------------TRDKITKTI--------------- 267 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gt--------------t~d~~~~~~--------------- 267 (472)
.+-.++++|++|+||||++..|.+. .+..++..+.. .........
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3557899999999999999988742 22221111100 011111000
Q ss_pred EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc-----cccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCE
Q psy9409 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE-----LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPV 342 (472)
Q Consensus 268 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~-----~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~pi 342 (472)
...++.++++||||..... ...++. +...... -...+-.++|+|++... ............-.+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~------~~l~~e--L~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK------TNLMEE--LKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC------HHHHHH--HHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCC
Confidence 1245689999999976540 222222 1122211 23578899999999642 2222222211122355
Q ss_pred EEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 343 IYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 343 ivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
-+|+||.|...... .+....+.|+..++ +|+++++|..
T Consensus 263 giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 263 GIILTKLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EEEEECCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 78999999654433 23445588998888 7888877654
No 346
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.52 E-value=6e-08 Score=82.60 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=73.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCc-eeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-TTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-tt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
+||+++|..|+|||+|+.++....+. ..+. .|.. +.-+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~--------------------~~~~------------------ 39 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG--------------------IDVY------------------ 39 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh--------------------hhhc------------------
Confidence 48999999999999999999766553 1221 1111 1111
Q ss_pred hhcccccccEEEEEEeCCCCCCchH-HHHHHHh-CCCCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDF-DKKIIKN-FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~-~~~il~~-l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
.....+.++.++.|++.+...+... |...+.. .+.+.|.++++||.|+.... .+......+++++|+++|.|+.
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHHHHHHHhCCCcchhh
Confidence 1224567889999999888755542 4443333 34567899999999985433 3333334467789999999884
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.48 E-value=1.2e-06 Score=85.81 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=82.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhC------CCcceecccCc--------------eeeeEEEE-------E--------EE
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAG--------------TTRDKITK-------T--------IQ 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~g--------------tt~d~~~~-------~--------~~ 268 (472)
+-.|+++|++|+||||++..|.. ..+..++-.+. ........ . ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999888763 22222221110 00011100 0 00
Q ss_pred eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcc-----cccccEEEEEEeCCCCCC-chHHHHHHHhCCCCCCE
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE-----LKNSDIIIYVQDARYDKH-TDFDKKIIKNFPMNIPV 342 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~-----~~~aD~il~v~D~s~~~~-~~~~~~il~~l~~~~pi 342 (472)
..++.++++||||....+ ...++. ++..... -..+|.+++|+|++.... ......+.+.+ .+.
T Consensus 152 ~~~~D~ViIDT~G~~~~d------~~~~~e--l~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~---~~~ 220 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNK------VNLMDE--LKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAV---GLT 220 (272)
T ss_pred HCCCCEEEEeCCCCCcch------HHHHHH--HHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhC---CCC
Confidence 245789999999976540 122222 1122222 224899999999985411 11222232222 356
Q ss_pred EEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 343 IYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 343 ivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
-+|+||.|...... .+....+.|+.+++ +|++++++..
T Consensus 221 g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 221 GIILTKLDGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEEEEccCCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 78999999866554 23345578888888 7888877643
No 348
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=1.6e-07 Score=90.76 Aligned_cols=56 Identities=36% Similarity=0.332 Sum_probs=42.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.++++|++|||||||+|+|++.....+++.++ ||++.....+ .+ ..++||||++..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 68999999999999999999876555444432 7776655444 32 379999999986
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.46 E-value=5.2e-07 Score=80.95 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=60.3
Q ss_pred hcccccccEEEEEEeCCCCCC--chHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCcc
Q psy9409 305 WVELKNSDIIIYVQDARYDKH--TDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIG 376 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~--~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~g 376 (472)
+..+..+|++++|+|++.+.. ...+...+.....++|+++|+||+|+.+... .+.+......+++||+++.|
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 456789999999999998632 2344555544434589999999999976542 11122222257899999999
Q ss_pred HHHHHHHHHHHh
Q psy9409 377 INLLRNTLLDLI 388 (472)
Q Consensus 377 i~~L~~~l~~~~ 388 (472)
+++|++.+.+.+
T Consensus 83 ~~~L~~~l~~~~ 94 (157)
T cd01858 83 KGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 350
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=3.8e-07 Score=88.10 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=62.4
Q ss_pred cccccccEEEEEEeCCCCC-CchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 306 VELKNSDIIIYVQDARYDK-HTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~-~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.+++++|.+++|+|++++. ++.....++..+ ..+.|+++|+||+||.+... ......+.+++++||++|.|+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL 111 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence 4788999999999999875 454444444333 26789999999999975332 111235678999999999999
Q ss_pred HHHHHHHHHHh
Q psy9409 378 NLLRNTLLDLI 388 (472)
Q Consensus 378 ~~L~~~l~~~~ 388 (472)
++|++.+.+..
T Consensus 112 ~eLf~~l~~~~ 122 (245)
T TIGR00157 112 KELIEALQNRI 122 (245)
T ss_pred HHHHhhhcCCE
Confidence 99999987654
No 351
>KOG1424|consensus
Probab=98.45 E-value=1.3e-07 Score=96.76 Aligned_cols=62 Identities=32% Similarity=0.386 Sum_probs=52.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.++.+.|++||.|||||||+||+|.|.+...|+..||.|+++.+..++ -.+.|.|+||+.-.
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFP 372 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCcccc
Confidence 344578999999999999999999999998899999999998665543 35789999998753
No 352
>KOG1707|consensus
Probab=98.44 E-value=4.9e-06 Score=86.60 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=102.2
Q ss_pred HhhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHH
Q psy9409 219 ALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 219 ~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
+..|+-++.-++|+.|+|||.|+++++|+.... ++...++.......+...| ..+++-|.+-. .. +..
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~--------~~l 489 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQ--------DFL 489 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-cc--------ccc
Confidence 345667899999999999999999999987754 3333333322223333323 23556565543 21 100
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC--CCCCCEEEEEecCCCCcCcc-------cccccCCC-ce
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF--PMNIPVIYVWNKIDYSGHQK-------NINYKNNI-AN 366 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~-~~ 366 (472)
.... ..||+++++||.+++.++.....+.+.. ....|+++|.+|+|+.+..+ .+....+. +.
T Consensus 490 ------~~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 490 ------TSKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP 561 (625)
T ss_pred ------cCcc--ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC
Confidence 1111 5799999999999988887666655543 26789999999999987664 22333443 36
Q ss_pred EEEEeccCccHHHHHHHHHHHhhccC
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEKTQ 392 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~~~ 392 (472)
+.+|.++... .++|..|.....++.
T Consensus 562 ~~~S~~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 562 IHISSKTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred eeeccCCCCC-chHHHHHHHhhhCCC
Confidence 7788885333 889999988876543
No 353
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=8.1e-08 Score=85.99 Aligned_cols=58 Identities=31% Similarity=0.346 Sum_probs=35.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec---ccC----ceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT---SIA----GTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~---~~~----gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
-.++++|++|||||||+|+|++.....+. ... .||+.. ..+.+.+ ...++||||++++
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~--~l~~l~~-g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHR--ELFPLPD-GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SE--EEEEETT-SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCe--eEEecCC-CcEEEECCCCCcc
Confidence 46899999999999999999997543222 221 244433 2333422 4579999999987
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=5.1e-07 Score=80.83 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=59.2
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc--c---ccccCCCceEEEEeccCccHHH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK--N---INYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~--~---~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
..++++|++++|+|++++.... ...+.+.+ ..++|+++|+||+|+.+... . +.+..+.+++++||++|.|+++
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~-~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~ 86 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTR-SRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKI 86 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccC-CHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHH
Confidence 3456799999999998763322 12232222 24689999999999965322 1 1223456799999999999999
Q ss_pred HHHHHHHHhh
Q psy9409 380 LRNTLLDLIE 389 (472)
Q Consensus 380 L~~~l~~~~~ 389 (472)
|++.+.+.+.
T Consensus 87 L~~~l~~~~~ 96 (156)
T cd01859 87 LRRTIKELAK 96 (156)
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 355
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.35 E-value=1.5e-06 Score=80.46 Aligned_cols=84 Identities=25% Similarity=0.131 Sum_probs=59.7
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------ccc-----ccCC---CceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NIN-----YKNN---IANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~-----~~~~---~~~i~v 369 (472)
...+++++|++++|+|++++.. .+...+... ..++|+++|+||+|+.+... .+. +..+ .+++++
T Consensus 28 l~~~~~~ad~il~VvD~~~~~~-~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 105 (190)
T cd01855 28 LSSISPKKALVVHVVDIFDFPG-SLIPRLRLF-GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILI 105 (190)
T ss_pred HHhcccCCcEEEEEEECccCCC-ccchhHHHh-cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEE
Confidence 4457889999999999987632 222233222 25689999999999975432 111 1122 258999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++|++.|.+.+.
T Consensus 106 SA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 106 SAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred ECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999763
No 356
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.34 E-value=3.1e-06 Score=83.93 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=95.2
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcce--------ec-----ccCceeeeEEEEEEEeCC----------------
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI--------VT-----SIAGTTRDKITKTIQINK---------------- 271 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~--------v~-----~~~gtt~d~~~~~~~~~~---------------- 271 (472)
.+..+.|+..|+.+.|||||+-.|.....-- .+ -..|.|.+.....+.+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3456789999999999999999987543210 00 011333333333333322
Q ss_pred -------eeEEEEeCCCCCccccccccchhHHHHHhHHhhhc--ccccccEEEEEEeCCCCCCchHHHHHHH-hCCCCCC
Q psy9409 272 -------FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV--ELKNSDIIIYVQDARYDKHTDFDKKIIK-NFPMNIP 341 (472)
Q Consensus 272 -------~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~--~~~~aD~il~v~D~s~~~~~~~~~~il~-~l~~~~p 341 (472)
.-+.|+||.|+..+ ++.+.. .-++.|..++++-+++.-+ ...++-+- .+....|
T Consensus 194 ~vv~~aDklVsfVDtvGHEpw---------------LrTtirGL~gqk~dYglLvVaAddG~~-~~tkEHLgi~~a~~lP 257 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPW---------------LRTTIRGLLGQKVDYGLLVVAADDGVT-KMTKEHLGIALAMELP 257 (527)
T ss_pred HhhhhcccEEEEEecCCccHH---------------HHHHHHHHhccccceEEEEEEccCCcc-hhhhHhhhhhhhhcCC
Confidence 23789999998765 223332 3467899999999988733 22222221 1236899
Q ss_pred EEEEEecCCCCcCcc--------------------cccc--------------cCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 342 VIYVWNKIDYSGHQK--------------------NINY--------------KNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 342 iivV~NK~Dl~~~~~--------------------~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
+++|++|+|+.+.+. .++. ..-.|++.+|+.||+|++-|.+.+..
T Consensus 258 viVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 258 VIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred EEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 999999999988763 0000 11258999999999999866655443
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=1.4e-05 Score=83.91 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC--------CcceecccCce------------eeeEEEEE-E----------Ee
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS--------DVAIVTSIAGT------------TRDKITKT-I----------QI 269 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~--------~~~~v~~~~gt------------t~d~~~~~-~----------~~ 269 (472)
...+-.|+|+|++|+||||++..|... .+..++..+.. ........ . .+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 345668999999999999999988742 22222211100 00000000 0 11
Q ss_pred CCeeEEEEeCCCCCccccccccchhH-HHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEec
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~-~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK 348 (472)
.++.++|+||||.... ... .+. +.... ... ....++|++.+. ....+..+++.+....+.-+|+||
T Consensus 427 ~~~DLVLIDTaG~s~~-------D~~l~ee--L~~L~-aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~~~~~gvILTK 493 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR-------DRALAAQ--LNWLR-AAR-QVTSLLVLPANA--HFSDLDEVVRRFAHAKPQGVVLTK 493 (559)
T ss_pred ccCCEEEecCCCcchh-------hHHHHHH--HHHHH-Hhh-cCCcEEEEECCC--ChhHHHHHHHHHHhhCCeEEEEec
Confidence 3468999999997654 221 211 11111 111 234567777764 234455666655444677899999
Q ss_pred CCCCcCcc---cccccCCCceEEEEeccCccH
Q psy9409 349 IDYSGHQK---NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 349 ~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi 377 (472)
+|...... .+....+.|+.+++ +|.++
T Consensus 494 lDEt~~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 494 LDETGRFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred CcCccchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 99865443 22233456666666 35555
No 358
>KOG0447|consensus
Probab=98.33 E-value=1.1e-05 Score=82.98 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhhhCC-CEEEEEecCCCchhHHHHhhhCCCcce-------------ec--c---
Q psy9409 194 KNDFFNELIKIKKKLLKIIQQGKKRALIRNG-LNVVLIGQPNVGKSSLFNSLVGSDVAI-------------VT--S--- 254 (472)
Q Consensus 194 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~-~~V~ivG~~nvGKSSLin~L~~~~~~~-------------v~--~--- 254 (472)
...+++.+-....++...+..+..+....+. ++|++||..++||||.+..+....... |+ .
T Consensus 277 ~kklKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy 356 (980)
T KOG0447|consen 277 HRKLKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH 356 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc
Confidence 4456666666777777777776655444443 599999999999999999987532211 00 0
Q ss_pred -----------------------------------cCceeeeEEEEEEEeCC---eeEEEEeCCCCCccccccccchhHH
Q psy9409 255 -----------------------------------IAGTTRDKITKTIQINK---FLFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 255 -----------------------------------~~gtt~d~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
..|.|...-...+.+.| ..++++|.||+..+-+....+ +.-
T Consensus 357 HVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~-dTK 435 (980)
T KOG0447|consen 357 HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAP-DTK 435 (980)
T ss_pred hhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccc-cch
Confidence 01222222222233333 368999999987652211111 111
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCC-CCCCEEEEEecCCCCcCc
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFP-MNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~-~~~piivV~NK~Dl~~~~ 355 (472)
+.+ ++.+..++.+.+++|+|+--.+-+.. .....++..+. .+...|+|++|+|+....
T Consensus 436 d~I-~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 436 ETI-FSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred HHH-HHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 221 55678899999999999853322111 13444555554 678899999999998764
No 359
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=5.7e-07 Score=87.75 Aligned_cols=57 Identities=32% Similarity=0.318 Sum_probs=40.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccC-------ceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-------GTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-------gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..+++|++|||||||+|+|.+.....+.++. .||+...-..+.-+| .++||||++++
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 5899999999999999999986443333322 355554443333345 49999999987
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=98.30 E-value=7.4e-06 Score=82.38 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=82.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhC----C--CcceecccC---ce-----------eeeEEEEEE---------------E
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG----S--DVAIVTSIA---GT-----------TRDKITKTI---------------Q 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~----~--~~~~v~~~~---gt-----------t~d~~~~~~---------------~ 268 (472)
+..|+++|++|+||||++..|.. . .+..+...+ +. ......... .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 46789999999999997777653 1 222211110 00 001111000 1
Q ss_pred eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCCCCCCEEEEEe
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFPMNIPVIYVWN 347 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~~~~piivV~N 347 (472)
..++.++|+||||.... ..+.++. ++... .....|.+++|+|+...... .....+.+. -..--+|+|
T Consensus 220 ~~~~DvVLIDTaGr~~~------~~~lm~e--L~~i~-~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~---~~~~giIlT 287 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHT------DANLMDE--LKKIV-RVTKPDLVIFVGDALAGNDAVEQAREFNEA---VGIDGVILT 287 (336)
T ss_pred hCCCCEEEEECCCccCC------cHHHHHH--HHHHH-HhhCCceEEEeeccccchhHHHHHHHHHhc---CCCCEEEEe
Confidence 13567999999997754 0233333 22222 22357899999999764211 112222221 234578999
Q ss_pred cCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 348 KIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 348 K~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
|.|...... .+....+.|+.+++ +|++++++..
T Consensus 288 KlD~~~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 288 KVDADAKGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred eecCCCCccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 999866543 23334578888888 7898887754
No 361
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.28 E-value=2e-06 Score=78.29 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=62.6
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--ccc---ccCCCceEEEEeccCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NIN---YKNNIANIYLSASKRI 375 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~---~~~~~~~i~vSA~~g~ 375 (472)
+++.+..++++|++++|+|++.+.... ...+.+.+ .++|+++|+||+|+.+... .+. +..+.+++.+||+++.
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~-~~~i~~~~-~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 87 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSR-NPLLEKIL-GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcC-ChhhHhHh-cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 556777899999999999998763322 12234333 4679999999999975432 111 1223468999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|+++|.+.+.+.+
T Consensus 88 gi~~L~~~l~~~l 100 (171)
T cd01856 88 GVKKLLKAAKKLL 100 (171)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998875
No 362
>KOG2485|consensus
Probab=98.27 E-value=1.6e-06 Score=84.14 Aligned_cols=65 Identities=34% Similarity=0.407 Sum_probs=53.5
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC-----CCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG-----SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~-----~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
...++.|.++|-||+|||||+|++.. ...+.|+..||.|+.+.+..--.+.-++.++||||+...
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 34678999999999999999999763 356778999999999877555556678999999998864
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=98.27 E-value=1.1e-06 Score=87.30 Aligned_cols=59 Identities=31% Similarity=0.287 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+..++++|++|||||||+|+|++.....++..+. ||+..... .+.+ ...++||||++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DLPG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--EcCC-CcEEEECCCcCcc
Confidence 3468999999999999999999876655455443 55544332 2322 2479999999964
No 364
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=1e-05 Score=83.47 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=79.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc--------ceec-cc---------------CceeeeEEEE-------EEEeC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV--------AIVT-SI---------------AGTTRDKITK-------TIQIN 270 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~--------~~v~-~~---------------~gtt~d~~~~-------~~~~~ 270 (472)
..+-+|+++|++|+||||++..|.+... ..+. +. .|........ ...+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 4566899999999999999998875311 1000 00 0000000000 01123
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~D 350 (472)
+..++++||+|.... ....... +... ......+-.++|+|++.. .....++......-..-=+|+||.|
T Consensus 269 ~~d~VLIDTaGrsqr-------d~~~~~~-l~~l-~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~~~~~~I~TKlD 337 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-------DQMLAEQ-IAML-SQCGTQVKHLLLLNATSS--GDTLDEVISAYQGHGIHGCIITKVD 337 (420)
T ss_pred CCCEEEecCCCCCcc-------hHHHHHH-HHHH-hccCCCceEEEEEcCCCC--HHHHHHHHHHhcCCCCCEEEEEeee
Confidence 467899999997764 2222111 2221 222334567788898853 3344555555543334568999999
Q ss_pred CCcCcc---cccccCCCceEEEEeccCccH
Q psy9409 351 YSGHQK---NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 351 l~~~~~---~~~~~~~~~~i~vSA~~g~gi 377 (472)
-..... .+....+.|+..++ +|.++
T Consensus 338 Et~~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 338 EAASLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred CCCCccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 876554 23334566776666 46666
No 365
>KOG2484|consensus
Probab=98.22 E-value=6.8e-07 Score=89.08 Aligned_cols=73 Identities=29% Similarity=0.433 Sum_probs=58.6
Q ss_pred HHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 210 KIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 210 ~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.++.++.+...++..++|+|+|-|||||||+||+|.......|++.||.|+...+..+ +..+.|+|.||+.-.
T Consensus 238 ~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 238 KVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVPP 310 (435)
T ss_pred HHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceeec
Confidence 3444444444567789999999999999999999999999899999999986644433 457899999998754
No 366
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.22 E-value=1.1e-05 Score=81.63 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=68.5
Q ss_pred EEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC----------Cch----
Q psy9409 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK----------HTD---- 327 (472)
Q Consensus 262 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~----------~~~---- 327 (472)
.....+.+++..+.+||..|.+.. ......++.++++++||+|.++.+ ...
T Consensus 174 i~~~~f~~~~~~~~~~DvgGqr~~---------------R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~ 238 (342)
T smart00275 174 IQETAFIVKKLFFRMFDVGGQRSE---------------RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLN 238 (342)
T ss_pred eEEEEEEECCeEEEEEecCCchhh---------------hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHH
Confidence 344556677888999999998766 223445788999999999999742 111
Q ss_pred HHHHHHHhC-CCCCCEEEEEecCCCCcCcccccccCCCceEEEEeccC-ccHHHHHHHHHHHhh
Q psy9409 328 FDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR-IGINLLRNTLLDLIE 389 (472)
Q Consensus 328 ~~~~il~~l-~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g-~gi~~L~~~l~~~~~ 389 (472)
.+..+++.- -.+.|+++++||.|+....-....... + ..-.+| ...+...+++.+.+.
T Consensus 239 ~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~--~--fp~y~g~~~~~~~~~yi~~~F~ 298 (342)
T smart00275 239 LFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVD--Y--FPDYKGPNDYEAAAKFIKQKFL 298 (342)
T ss_pred HHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhc--c--CCCCCCCCCHHHHHHHHHHHHH
Confidence 233333221 156899999999998764321000000 0 011122 478888888888874
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.22 E-value=9.4e-06 Score=73.03 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-HHHHHHHhCCCCCCEEEEEecCC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~~piivV~NK~D 350 (472)
...+++||||..+. ....+...........-..|.+++++|+....... ....+..++. .--++|+||+|
T Consensus 87 ~d~I~IEt~G~~~p-------~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~--~ad~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADP-------GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA--FADRILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCH-------HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH--HCCEEEEeccc
Confidence 46789999999875 44444432233445566799999999987531100 0112222221 12367999999
Q ss_pred C
Q psy9409 351 Y 351 (472)
Q Consensus 351 l 351 (472)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=4.2e-05 Score=77.84 Aligned_cols=144 Identities=15% Similarity=0.186 Sum_probs=76.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC--------cceecccC----------------ceeeeEEEEE-------EEeC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD--------VAIVTSIA----------------GTTRDKITKT-------IQIN 270 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~--------~~~v~~~~----------------gtt~d~~~~~-------~~~~ 270 (472)
..+-.++++|++||||||++..|...- ...++... +......... ..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 445679999999999999999987531 11111100 1101000000 1124
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CC-------CC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MN-------IP 341 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~-------~p 341 (472)
++.++|+||||.... +...... +.. ......++-.++|++++... +...++++... .. .+
T Consensus 215 ~~DlVLIDTaG~~~~-------d~~l~e~-La~-L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~ 283 (374)
T PRK14722 215 NKHMVLIDTIGMSQR-------DRTVSDQ-IAM-LHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDL 283 (374)
T ss_pred CCCEEEEcCCCCCcc-------cHHHHHH-HHH-HhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCC
Confidence 568999999997754 3322221 111 22233455678999988752 22222222211 11 12
Q ss_pred EEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHH
Q psy9409 342 VIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 342 iivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
-=+|+||.|-..... .+....+.|+..++ +|.+|.
T Consensus 284 ~~~I~TKlDEt~~~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 284 AGCILTKLDEASNLGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred CEEEEeccccCCCccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 357889999876544 22334456766666 344444
No 369
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.19 E-value=2e-06 Score=85.12 Aligned_cols=58 Identities=29% Similarity=0.320 Sum_probs=40.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccC-------ceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-------GTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-------gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
-.++++|++|||||||+|.|++.....++... +||++.....+... ..++||||+.++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46999999999999999999997654433332 35665533333222 369999999875
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.17 E-value=5e-06 Score=74.45 Aligned_cols=76 Identities=22% Similarity=0.173 Sum_probs=53.5
Q ss_pred cEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCcc--c----ccccCCCceEEEEeccCccHHHHHHH
Q psy9409 312 DIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK--N----INYKNNIANIYLSASKRIGINLLRNT 383 (472)
Q Consensus 312 D~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~--~----~~~~~~~~~i~vSA~~g~gi~~L~~~ 383 (472)
|++|+|+|++++.... .+... ..+ ..++|+++|+||+|+.+... . +....+.+++.+||++|.|+++|.+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~ 79 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESA 79 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHH
Confidence 7899999998874332 11110 122 35789999999999975432 1 22223456899999999999999999
Q ss_pred HHHHh
Q psy9409 384 LLDLI 388 (472)
Q Consensus 384 l~~~~ 388 (472)
+.+..
T Consensus 80 i~~~~ 84 (155)
T cd01849 80 FTKQT 84 (155)
T ss_pred HHHHh
Confidence 87653
No 371
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.17 E-value=1.6e-05 Score=80.45 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCc--ceecccCceeeeEEE-----------------------------EEEEeCCe
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDV--AIVTSIAGTTRDKIT-----------------------------KTIQINKF 272 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~--~~v~~~~gtt~d~~~-----------------------------~~~~~~~~ 272 (472)
+-.|++|||+||||||.+-.|...-. ..-....-.|.|.++ ....+..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45699999999999999998875432 000111123333221 00112346
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~ 352 (472)
.++|+||+|.... |......+....... ...-+.+|++++.. .....++++.+..-..-=+++||.|-.
T Consensus 283 d~ILVDTaGrs~~--------D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i~~~I~TKlDET 351 (407)
T COG1419 283 DVILVDTAGRSQY--------DKEKIEELKELIDVS-HSIEVYLVLSATTK--YEDLKEIIKQFSLFPIDGLIFTKLDET 351 (407)
T ss_pred CEEEEeCCCCCcc--------CHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHHHHHHHhccCCcceeEEEccccc
Confidence 7999999996654 222222243444444 33445566676653 456777877774333345789999976
Q ss_pred cCcc
Q psy9409 353 GHQK 356 (472)
Q Consensus 353 ~~~~ 356 (472)
..-.
T Consensus 352 ~s~G 355 (407)
T COG1419 352 TSLG 355 (407)
T ss_pred Cchh
Confidence 6544
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=8.9e-05 Score=75.12 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=79.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccCcee------------eeE-EEEEEE-------------eC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGTT------------RDK-ITKTIQ-------------IN 270 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gtt------------~d~-~~~~~~-------------~~ 270 (472)
.+-.++++|++|+||||++..|... .+..++..+... .+. .....+ ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3456899999999999999988742 222222211100 000 000000 02
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~D 350 (472)
++.++|+||||.... ..+.++. +....... ..|.+++|+++.. .......+++....-.+--+|+||.|
T Consensus 285 ~~D~VLIDTAGr~~~------d~~~l~E--L~~l~~~~-~p~~~~LVLsag~--~~~d~~~i~~~f~~l~i~glI~TKLD 353 (407)
T PRK12726 285 CVDHILIDTVGRNYL------AEESVSE--ISAYTDVV-HPDLTCFTFSSGM--KSADVMTILPKLAEIPIDGFIITKMD 353 (407)
T ss_pred CCCEEEEECCCCCcc------CHHHHHH--HHHHhhcc-CCceEEEECCCcc--cHHHHHHHHHhcCcCCCCEEEEEccc
Confidence 468999999997543 0223333 22222222 4577778887643 23334455554433334578899999
Q ss_pred CCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 351 YSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 351 l~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
-..... .+....+.|+..+| +|.++.+
T Consensus 354 ET~~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 354 ETTRIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred CCCCccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 865543 23445567776666 4555554
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=98.12 E-value=5.2e-06 Score=84.11 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred ccccccEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCcc--ccc---ccCCCceEEEEeccCccHHH
Q psy9409 307 ELKNSDIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK--NIN---YKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~--~~~---~~~~~~~i~vSA~~g~gi~~ 379 (472)
.+.++|.+++|+|+.++.... .+..++... ..+.|+++|+||+||..... .+. ...+++++++||++|.|+++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~e 165 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEA 165 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence 478899999999998774333 234444332 35789999999999975432 121 24577899999999999999
Q ss_pred HHHHHHHHh
Q psy9409 380 LRNTLLDLI 388 (472)
Q Consensus 380 L~~~l~~~~ 388 (472)
|++.+....
T Consensus 166 L~~~L~~ki 174 (352)
T PRK12289 166 LLEQLRNKI 174 (352)
T ss_pred Hhhhhccce
Confidence 999987654
No 374
>KOG0466|consensus
Probab=98.11 E-value=1.5e-06 Score=83.54 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=71.8
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKID 350 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~D 350 (472)
.+.|+|.||+.-. +...++-..-.|++++++....+.......+-+..+. .-+.++++-||+|
T Consensus 126 HVSfVDCPGHDiL---------------MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiD 190 (466)
T KOG0466|consen 126 HVSFVDCPGHDIL---------------MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKID 190 (466)
T ss_pred EEEeccCCchHHH---------------HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhh
Confidence 3789999996543 3344555566788999998876533332222222221 4567899999999
Q ss_pred CCcCccc------ccc------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 351 YSGHQKN------INY------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 351 l~~~~~~------~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+....+. +.+ ..+.|++++||.-+.|++-+.++|.+.++
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9877652 111 34679999999999999999999999985
No 375
>PRK00098 GTPase RsgA; Reviewed
Probab=98.08 E-value=6.1e-06 Score=82.12 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=59.8
Q ss_pred cccccccEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 306 VELKNSDIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
..+.++|++++|+|++++.... ....++..+ ..++|+++|+||+|+..... ...+..+.+++++||++|.|+
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 155 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL 155 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence 3468999999999998775433 223333222 25789999999999963322 112234678999999999999
Q ss_pred HHHHHHHHHHh
Q psy9409 378 NLLRNTLLDLI 388 (472)
Q Consensus 378 ~~L~~~l~~~~ 388 (472)
++|++.+....
T Consensus 156 ~~L~~~l~gk~ 166 (298)
T PRK00098 156 DELKPLLAGKV 166 (298)
T ss_pred HHHHhhccCce
Confidence 99999886543
No 376
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=5.8e-06 Score=81.84 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccccccEEEEEEeCCCCC-CchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccCccHHH
Q psy9409 307 ELKNSDIIIYVQDARYDK-HTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~-~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
.+.++|.+++|+|+.++. +......++..+ ..++|+++|+||+|+.+... ......+.+++++||+++.|+++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~ 154 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDE 154 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHH
Confidence 578899999999999875 333333343322 25789999999999976532 11223577899999999999999
Q ss_pred HHHHHHHHh
Q psy9409 380 LRNTLLDLI 388 (472)
Q Consensus 380 L~~~l~~~~ 388 (472)
|+..|....
T Consensus 155 L~~~L~~k~ 163 (287)
T cd01854 155 LREYLKGKT 163 (287)
T ss_pred HHhhhccce
Confidence 999887643
No 377
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=1.2e-05 Score=81.62 Aligned_cols=143 Identities=20% Similarity=0.184 Sum_probs=79.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC------CcceecccCce--e------------eeEEEEE--------E---E-eCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGT--T------------RDKITKT--------I---Q-INK 271 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gt--t------------~d~~~~~--------~---~-~~~ 271 (472)
+..|+++|++|+||||++..|... .+..++..+.. . ....... + . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 457999999999999999998631 22222211110 0 0000000 0 0 014
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY 351 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl 351 (472)
+.++|+||||.... ....++. +.+... ....|-+++|+|++.. ......+++.+..-..-=+++||.|-
T Consensus 321 ~DvVLIDTaGRs~k------d~~lm~E--L~~~lk-~~~PdevlLVLsATtk--~~d~~~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYR------ASETVEE--MIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCc------CHHHHHH--HHHHHh-hcCCCeEEEEECCccC--hHHHHHHHHHhcCCCCCEEEEEcccC
Confidence 68999999997543 0223333 222222 2236778899998753 23334555555433345689999998
Q ss_pred CcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 352 SGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 352 ~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
..... .+....+.|+..++ +|.++.+
T Consensus 390 T~k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 390 TASSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred CCCccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 76544 23444566766665 3555443
No 378
>KOG0463|consensus
Probab=98.07 E-value=2.4e-05 Score=77.31 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=87.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce-------------ecccCcee----eeE---------------EEEEEEe---
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI-------------VTSIAGTT----RDK---------------ITKTIQI--- 269 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~-------------v~~~~gtt----~d~---------------~~~~~~~--- 269 (472)
.+|+++|...+|||||+-.|...+.-- -.-..|.| .|. ....++|
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 489999999999999999887533210 00000111 110 0111111
Q ss_pred ---CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccc--ccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEE
Q psy9409 270 ---NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVEL--KNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344 (472)
Q Consensus 270 ---~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~--~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piiv 344 (472)
...-++|+|.+|++.+ +..+..-+ .-.|...+++-+...-....-+.+--.+....|+++
T Consensus 214 ce~saKviTFIDLAGHEkY---------------LKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfv 278 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKY---------------LKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFV 278 (641)
T ss_pred ccccceeEEEEeccchhhh---------------hheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEE
Confidence 1134789999998876 32333222 347888888877665211111111112246889999
Q ss_pred EEecCCCCcCcc-----------------------------------cccccCCCceEEEEeccCccHHHHHHHHH
Q psy9409 345 VWNKIDYSGHQK-----------------------------------NINYKNNIANIYLSASKRIGINLLRNTLL 385 (472)
Q Consensus 345 V~NK~Dl~~~~~-----------------------------------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 385 (472)
|++|+|..+... .+....-||+|.+|-.+|+|++-|...|.
T Consensus 279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 999999887652 01112237899999999999987776653
No 379
>KOG3905|consensus
Probab=98.07 E-value=6.4e-05 Score=73.24 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCCEEEEEecCCCCcCcc------------------cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 339 NIPVIYVWNKIDYSGHQK------------------NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 339 ~~piivV~NK~Dl~~~~~------------------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++|+++|++|+|...--. .++-..|...|.+|+|...|++-|..+|.....
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 578999999999843211 122246778999999999999999999998763
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.06 E-value=8e-06 Score=71.91 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=51.6
Q ss_pred hhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc--cc---cccCCCceEEEEeccCcc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NI---NYKNNIANIYLSASKRIG 376 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~---~~~~~~~~i~vSA~~g~g 376 (472)
....+..+|++++|+|++++.... .+..++.....++|+++|+||+|+.+... .+ .+..+.+++++||+++.+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 556788999999999998874322 44444443334789999999999975432 11 112346799999999876
No 381
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.06 E-value=1.1e-05 Score=79.48 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=61.4
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--ccc---ccCCCceEEEEeccCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NIN---YKNNIANIYLSASKRI 375 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~---~~~~~~~i~vSA~~g~ 375 (472)
++.....+..+|++|+|+|+..+.+.. ...+.+.+ .++|+++|+||+|+.+... .+. +..+.+++.+||+++.
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~-~~~i~~~l-~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSR-NPMIDEIR-GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCC-ChhHHHHH-CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 445667889999999999998763322 12222333 4689999999999965431 111 1134578999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|+++|.+.+.+.+
T Consensus 90 gi~~L~~~i~~~~ 102 (276)
T TIGR03596 90 GVKKIIKAAKKLL 102 (276)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999888765
No 382
>KOG1143|consensus
Probab=98.06 E-value=1.4e-05 Score=78.96 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=89.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcc------eec-------ccCceeeeEEEEE---------EEe------------C
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVA------IVT-------SIAGTTRDKITKT---------IQI------------N 270 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~------~v~-------~~~gtt~d~~~~~---------~~~------------~ 270 (472)
++|+++|...+|||||+--|...+.- ... -..|.|....... +++ .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 69999999999999999998864321 100 0112221111111 111 1
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccc--cccEEEEEEeCCCCCCc--hHHHHHHHhCCCCCCEEEEE
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELK--NSDIIIYVQDARYDKHT--DFDKKIIKNFPMNIPVIYVW 346 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~--~aD~il~v~D~s~~~~~--~~~~~il~~l~~~~piivV~ 346 (472)
..-+.|+|.+|...+ ...+...+. ..|.+++|+++...-.. ..-..++.. .+.|+++++
T Consensus 248 SKlvTfiDLAGh~kY---------------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlv 310 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKY---------------QKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLV 310 (591)
T ss_pred cceEEEeecccchhh---------------heeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEE
Confidence 134889999998876 222333332 37889999998876322 222233333 589999999
Q ss_pred ecCCCCcCcc------c-----------------------c---cc---cCCCceEEEEeccCccHHHHHHHHH
Q psy9409 347 NKIDYSGHQK------N-----------------------I---NY---KNNIANIYLSASKRIGINLLRNTLL 385 (472)
Q Consensus 347 NK~Dl~~~~~------~-----------------------~---~~---~~~~~~i~vSA~~g~gi~~L~~~l~ 385 (472)
+|+|+.+... . + .+ ..-.|++.+|..+|+|++-|...|.
T Consensus 311 tK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 311 TKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred EeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 9999988732 0 0 00 1124789999999999987765553
No 383
>KOG0460|consensus
Probab=98.04 E-value=2.9e-05 Score=76.10 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=99.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC-------C---c-----ceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS-------D---V-----AIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~-------~---~-----~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..++|+-+|+..-|||||..++..- + + +.-....|.|.......++-....+-=+|+||+-++
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 345689999999999999999998631 1 1 111223367777666666666667788999998887
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHH--HHHHhCCCCCCEEEEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK--KIIKNFPMNIPVIYVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~--~il~~l~~~~piivV~NK~Dl~~~~~------- 356 (472)
++....-..+.|..|+|+.+++..-.+.-+ -+.+++. -..+++.+||.|+.++.+
T Consensus 131 ---------------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVG-V~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 131 ---------------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVG-VKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred ---------------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcC-CceEEEEEecccccCCHHHHHHHHH
Confidence 555556677889999999999874322222 2233332 245888999999996554
Q ss_pred c----ccc--c--CCCceEEEEe---ccCc-------cHHHHHHHHHHHhh
Q psy9409 357 N----INY--K--NNIANIYLSA---SKRI-------GINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~----~~~--~--~~~~~i~vSA---~~g~-------gi~~L~~~l~~~~~ 389 (472)
. +.+ + ...|++.=|| +.|. .|.+|++.+-..+.
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 1 111 1 2367887665 4442 25566666655553
No 384
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.4e-05 Score=85.89 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=78.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCc--------ceecccC----------------ceeeeEEEE-------EEEeCCe
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDV--------AIVTSIA----------------GTTRDKITK-------TIQINKF 272 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~--------~~v~~~~----------------gtt~d~~~~-------~~~~~~~ 272 (472)
+-.|+++|++||||||++..|.+.-. ..++... +........ .-...++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 44689999999999999999885321 1111100 000000000 0012346
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCC---CCEEEEEecC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMN---IPVIYVWNKI 349 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~---~piivV~NK~ 349 (472)
.++||||||.... ....... +.... .....+-+++|+|++.. .+...++.+.+... .+-=+|+||.
T Consensus 265 D~VLIDTAGRs~~-------d~~l~ee-l~~l~-~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKL 333 (767)
T PRK14723 265 HLVLIDTVGMSQR-------DRNVSEQ-IAMLC-GVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKL 333 (767)
T ss_pred CEEEEeCCCCCcc-------CHHHHHH-HHHHh-ccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEecc
Confidence 7999999996654 2222211 22212 23346678899998853 33444455444221 2345789999
Q ss_pred CCCcCcc---cccccCCCceEEEEeccCccH
Q psy9409 350 DYSGHQK---NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 350 Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi 377 (472)
|-..... .+....+.|+..++ +|.+|
T Consensus 334 DEt~~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 334 DEATHLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred CCCCCccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 9876544 23445567777777 45555
No 385
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.01 E-value=3.6e-05 Score=80.76 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC--------cceecccCc----------------eeeeEEE-------EEEEeCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD--------VAIVTSIAG----------------TTRDKIT-------KTIQINK 271 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~--------~~~v~~~~g----------------tt~d~~~-------~~~~~~~ 271 (472)
.+-.++++|++||||||++..|.+.- +..+...+. ....... ......+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 34568999999999999999988532 211111110 0000000 0012234
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY 351 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl 351 (472)
+.++++||+|.... ....... .... .......-.++|+|++.. .....++.+.+......-+|+||.|-
T Consensus 335 ~d~VLIDTaGr~~~-------d~~~~e~-~~~l-~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~~~~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQR-------DRMVSEQ-IAML-HGAGAPVKRLLLLNATSH--GDTLNEVVQAYRGPGLAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChh-------hHHHHHH-HHHH-hccCCCCeeEEEEeCCCc--HHHHHHHHHHhccCCCCEEEEeCCCC
Confidence 57899999996654 2221111 1111 111112337888898764 34445555555433445678999997
Q ss_pred CcCcc---cccccCCCceEEEEeccCccH-HHHH
Q psy9409 352 SGHQK---NINYKNNIANIYLSASKRIGI-NLLR 381 (472)
Q Consensus 352 ~~~~~---~~~~~~~~~~i~vSA~~g~gi-~~L~ 381 (472)
..... .+....+.|+.+++ +|++| ++|.
T Consensus 404 t~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 404 AASLGGALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred cccchHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 66543 23344567777776 56677 4443
No 386
>KOG2423|consensus
Probab=98.01 E-value=2.3e-06 Score=85.04 Aligned_cols=62 Identities=32% Similarity=0.368 Sum_probs=49.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+..+.|+++|.||+||||++|.|-..+++.|.++||-|.-....++ -..|.|||+||+...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYP 365 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCC
Confidence 34568999999999999999999999999999999998863211111 236889999998764
No 387
>KOG0467|consensus
Probab=98.00 E-value=1.5e-05 Score=85.21 Aligned_cols=110 Identities=26% Similarity=0.365 Sum_probs=75.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCce---------------eeeEEEEEEEeCCeeEEEEeCCCCCccccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT---------------TRDKITKTIQINKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gt---------------t~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 290 (472)
+++++-+..-|||||...|+..+.-+.+...|+ |..........+++.++++|+||+.++
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf----- 85 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF----- 85 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch-----
Confidence 689999999999999999987765443444443 222212223336788999999999998
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh-CCCCCCEEEEEecCCC
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYVWNKIDY 351 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~-l~~~~piivV~NK~Dl 351 (472)
..++.. ..+-+|.+++++|+..+-..+ ...++++ ...+...++|+||+|.
T Consensus 86 --~sevss--------as~l~d~alvlvdvvegv~~q-t~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 --SSEVSS--------ASRLSDGALVLVDVVEGVCSQ-TYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred --hhhhhh--------hhhhcCCcEEEEeeccccchh-HHHHHHHHHHccCceEEEEehhhh
Confidence 443332 455689999999998873322 2333332 2356677899999993
No 388
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.96 E-value=2.7e-05 Score=69.26 Aligned_cols=58 Identities=26% Similarity=0.177 Sum_probs=38.0
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~D 350 (472)
++.+.|+||||.... ....+..||.++++..++-.+. ..+++......--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~------------------~~~~~~~Ad~~ivv~tpe~~D~----y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS------------------EVDIASMADTTVVVMAPGAGDD----IQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh------------------hhhHHHhCCEEEEEECCCchhH----HHHhhhhHhhhcCEEEEeCCC
Confidence 467999999997654 2346778999999988773222 222222112334589999998
No 389
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00016 Score=74.19 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=80.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC----------CcceecccCce--------------eeeEEEEE---------EEeC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS----------DVAIVTSIAGT--------------TRDKITKT---------IQIN 270 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~----------~~~~v~~~~gt--------------t~d~~~~~---------~~~~ 270 (472)
+..|+++|++|+||||.+..|... .+..++-.+.. ........ -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 456899999999999999887631 22221111100 00000000 0124
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~D 350 (472)
++.++++||||....+ ...+.. +..........+-+++|+|++.. .....++++....-.+-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~~------~~~l~e--l~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKD------FMKLAE--MKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccC------HHHHHH--HHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCCCCEEEEEecc
Confidence 5689999999965430 111222 22233333223357899999875 3344456555533335568999999
Q ss_pred CCcCcc---cccccCCCceEEEEeccCccH-HHHH
Q psy9409 351 YSGHQK---NINYKNNIANIYLSASKRIGI-NLLR 381 (472)
Q Consensus 351 l~~~~~---~~~~~~~~~~i~vSA~~g~gi-~~L~ 381 (472)
-..... .+....+.|+..++ +|.++ +++.
T Consensus 324 et~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 324 ETTCVGNLISLIYEMRKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred CCCcchHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 866554 23334566766665 56777 4444
No 390
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.93 E-value=2.4e-05 Score=77.44 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=61.4
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--ccc---ccCCCceEEEEeccCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NIN---YKNNIANIYLSASKRI 375 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~---~~~~~~~i~vSA~~g~ 375 (472)
.+.....+..+|++|+|+|+..+.+.. ...+.+.+ .++|+++|+||+|+.+... .+. +..+.+++.+||+++.
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~-~~~l~~~~-~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSE-NPMIDKII-GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCC-ChhHHHHh-CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 445667889999999999998763322 12223333 3789999999999975431 111 1224678999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|+++|.+.+.+.+
T Consensus 93 gi~~L~~~l~~~l 105 (287)
T PRK09563 93 GVKKILKAAKKLL 105 (287)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999887764
No 391
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00038 Score=71.61 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=75.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC-------cceecccCce--------------eeeEEEE--------EEEeCCeeE
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD-------VAIVTSIAGT--------------TRDKITK--------TIQINKFLF 274 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~-------~~~v~~~~gt--------------t~d~~~~--------~~~~~~~~i 274 (472)
+..++++|++||||||++..|.... ...++-.+.- ..+.... .+.-.++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999987421 1111111100 0001000 000136689
Q ss_pred EEEeCCCCCccccccccchhHHHHHhHHhhhcccc--cccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCC
Q psy9409 275 KITDTAGIPDINSKIKKNINEVEKIGIERTWVELK--NSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 275 ~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~--~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~ 352 (472)
+++||||.... ..+.++. +........ ...-.++|+|++.. ......+.+....-.+-=+|+||.|-.
T Consensus 303 VLIDTaGr~~r------d~~~l~e--L~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHR------NLEQLER--MQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCcc------CHHHHHH--HHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 99999997643 0333333 222222221 23467889998875 233445554443333456899999986
Q ss_pred cCcc---cccccCCCceEEEEe
Q psy9409 353 GHQK---NINYKNNIANIYLSA 371 (472)
Q Consensus 353 ~~~~---~~~~~~~~~~i~vSA 371 (472)
.... .+....+.|+..++.
T Consensus 373 ~~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 373 DFLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred CCccHHHHHHHHHCCCEEEEec
Confidence 5543 233345667666663
No 392
>KOG0082|consensus
Probab=97.91 E-value=0.0001 Score=73.83 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=70.3
Q ss_pred eEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc----------hHHH
Q psy9409 261 DKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT----------DFDK 330 (472)
Q Consensus 261 d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~----------~~~~ 330 (472)
...+..+.+.+.++.++|.+|++.. .++......+++++|||++.++-+.. ....
T Consensus 184 GI~e~~F~~k~~~f~~~DvGGQRse---------------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~ 248 (354)
T KOG0082|consen 184 GIVEVEFTIKGLKFRMFDVGGQRSE---------------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESL 248 (354)
T ss_pred CeeEEEEEeCCCceEEEeCCCcHHH---------------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHH
Confidence 3556777888899999999998865 34566688999999999999864211 0222
Q ss_pred HHHHhCC-----CCCCEEEEEecCCCCcCcccccccCCCceEEEEeccC-ccHHHHHHHHHHHhh
Q psy9409 331 KIIKNFP-----MNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKR-IGINLLRNTLLDLIE 389 (472)
Q Consensus 331 ~il~~l~-----~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g-~gi~~L~~~l~~~~~ 389 (472)
.+++.+. .+.++|+++||.||....- ....-..+ .+-.+| ...++..++|..++.
T Consensus 249 ~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi--~~~~~~~~--Fpdy~G~~~~~~a~~yI~~kF~ 309 (354)
T KOG0082|consen 249 KLFESICNNKWFANTSIILFLNKKDLFEEKI--KKVPLTDC--FPDYKGVNTYEEAAKYIRKKFE 309 (354)
T ss_pred HHHHHHhcCcccccCcEEEEeecHHHHHHHh--ccCchhhh--CcCCCCCCChHHHHHHHHHHHH
Confidence 3333321 4689999999999976542 11000001 111122 356677777777773
No 393
>PRK12288 GTPase RsgA; Reviewed
Probab=97.91 E-value=2.7e-05 Score=78.91 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=59.7
Q ss_pred ccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----c---ccccCCCceEEEEeccCccH
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----N---INYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~---~~~~~~~~~i~vSA~~g~gi 377 (472)
...++|.+++|++.+...+......++... ..++|.++|+||+|+.+... . ..+..+.+++++||+++.|+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 357799999999987554444444443332 25689999999999976431 1 11235678999999999999
Q ss_pred HHHHHHHHHHh
Q psy9409 378 NLLRNTLLDLI 388 (472)
Q Consensus 378 ~~L~~~l~~~~ 388 (472)
++|++.|...+
T Consensus 197 deL~~~L~~ki 207 (347)
T PRK12288 197 EELEAALTGRI 207 (347)
T ss_pred HHHHHHHhhCC
Confidence 99999998754
No 394
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.86 E-value=0.00015 Score=84.86 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=70.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecc-------cCceeeeEEEEEEEeCCeeEEEEeCCCCCccccc-cccchhHHH
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTS-------IAGTTRDKITKTIQINKFLFKITDTAGIPDINSK-IKKNINEVE 297 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~-------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~-~~~~~~~~e 297 (472)
=.+|+|++|+||||+++.- |-++..... ..+.|+++ .+-+ ...-+++||+|..-.... .......+.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c---~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC---DWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc---ceEe-cCCEEEEcCCCccccCCCcccccHHHHH
Confidence 3789999999999999986 444432110 01122211 1111 235679999996643100 000011122
Q ss_pred HH-hHHhhhcccccccEEEEEEeCCCCCCc--h-----------HHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 298 KI-GIERTWVELKNSDIIIYVQDARYDKHT--D-----------FDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 298 ~~-~i~~~~~~~~~aD~il~v~D~s~~~~~--~-----------~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
.. ..-+....-+-.|++|+++|+++.-.. . .+.++.+.++...|+.+|+||+|+...-
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF 259 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF 259 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence 21 111112223568999999998865211 1 2345555667889999999999998543
No 395
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.85 E-value=4.5e-05 Score=77.95 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=58.5
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------c----ccccCCC---ceEEEEe
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------N----INYKNNI---ANIYLSA 371 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~----~~~~~~~---~~i~vSA 371 (472)
..+...++++++|+|+.+.. ..+...+.+.+ .+.|+++|+||+|+.+... . ..+..+. .++.+||
T Consensus 58 ~~~~~~~~~Il~VvD~~d~~-~s~~~~l~~~~-~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA 135 (360)
T TIGR03597 58 NSLGDSNALIVYVVDIFDFE-GSLIPELKRFV-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSA 135 (360)
T ss_pred hhcccCCcEEEEEEECcCCC-CCccHHHHHHh-CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecC
Confidence 34567889999999998753 23344444444 4789999999999976432 1 1222344 4899999
Q ss_pred ccCccHHHHHHHHHHH
Q psy9409 372 SKRIGINLLRNTLLDL 387 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~ 387 (472)
++|.|++++++.|.+.
T Consensus 136 k~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 136 KKGNGIDELLDKIKKA 151 (360)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999765
No 396
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=4.4e-05 Score=78.94 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=77.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe---CCeeEEEEeCCCCCccccccccchhHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI---NKFLFKITDTAGIPDINSKIKKNINEVEK 298 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~~e~ 298 (472)
..++-|+++||||+|||||+..|..+-.. .|.+.+...+.+ ....++|+.+|. +.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk-------~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl------------- 124 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK-------QTIDEIRGPITVVSGKTRRITFLECPS--DL------------- 124 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH-------hhhhccCCceEEeecceeEEEEEeChH--HH-------------
Confidence 34577899999999999999999865321 111111122211 234788998883 21
Q ss_pred HhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCccc------------ccc-cCC
Q psy9409 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQKN------------INY-KNN 363 (472)
Q Consensus 299 ~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~~------------~~~-~~~ 363 (472)
.......+-||++|+++|..-+- .....+++..+ .++.| ++-|++..|+...... |.+ ..|
T Consensus 125 ---~~miDvaKIaDLVlLlIdgnfGf-EMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqG 200 (1077)
T COG5192 125 ---HQMIDVAKIADLVLLLIDGNFGF-EMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQG 200 (1077)
T ss_pred ---HHHHhHHHhhheeEEEeccccCc-eehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCC
Confidence 12334456699999999998762 22333444433 35666 6779999999876641 111 236
Q ss_pred CceEEEEec
Q psy9409 364 IANIYLSAS 372 (472)
Q Consensus 364 ~~~i~vSA~ 372 (472)
..+|.+|-.
T Consensus 201 aKlFylsgV 209 (1077)
T COG5192 201 AKLFYLSGV 209 (1077)
T ss_pred ceEEEeccc
Confidence 677777743
No 397
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.83 E-value=0.00018 Score=75.55 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCCEEEEEecCCCCcCc---c---------------cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 339 NIPVIYVWNKIDYSGHQ---K---------------NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 339 ~~piivV~NK~Dl~~~~---~---------------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++|++||++|+|....- . .+.-.+|...+.+|++...+++-|+.+|...+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 36999999999975321 1 122246788999999999999999999988874
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.82 E-value=0.00021 Score=74.51 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhhHH-hhhCCCEEEEEecCCCchhHHHHhhhC------CCcceecccCce--------------ee
Q psy9409 202 IKIKKKLLKIIQQGKKRA-LIRNGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAGT--------------TR 260 (472)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~-~~~~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~gt--------------t~ 260 (472)
+.+.+++.+++....... ....+..|+++|++|+||||++..|.. ..+..++..+.. ..
T Consensus 72 ~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 72 KIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred HHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 444555555543322111 112355789999999999999988753 122222111100 00
Q ss_pred eEEEEE--E-----------EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch
Q psy9409 261 DKITKT--I-----------QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD 327 (472)
Q Consensus 261 d~~~~~--~-----------~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~ 327 (472)
.+.... . ...+..++++||||.... ..+.++.+ . .......+|.+++|+|++... +
T Consensus 152 p~~~~~~~~d~~~i~~~al~~~~~~DvVIIDTAGr~~~------d~~lm~El--~-~l~~~~~pdevlLVvda~~gq--~ 220 (437)
T PRK00771 152 PFYGDPDNKDAVEIAKEGLEKFKKADVIIVDTAGRHAL------EEDLIEEM--K-EIKEAVKPDEVLLVIDATIGQ--Q 220 (437)
T ss_pred cEEecCCccCHHHHHHHHHHHhhcCCEEEEECCCcccc------hHHHHHHH--H-HHHHHhcccceeEEEeccccH--H
Confidence 011000 0 012347999999997654 02333331 1 122344689999999987752 2
Q ss_pred HHHHHHHhCCCCCC-EEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 328 FDKKIIKNFPMNIP-VIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 328 ~~~~il~~l~~~~p-iivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
.. ...+.+....+ .-+|+||.|...... .+....+.|+.+++. |+.+++|..
T Consensus 221 av-~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~--Ge~v~Dle~ 276 (437)
T PRK00771 221 AK-NQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGT--GEKIDDLER 276 (437)
T ss_pred HH-HHHHHHHhcCCCCEEEEecccCCCcccHHHHHHHHHCcCEEEEec--CCCcccCCc
Confidence 22 22233322233 467899999755443 234456778777774 666666543
No 399
>PRK13695 putative NTPase; Provisional
Probab=97.81 E-value=0.00014 Score=66.39 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=52.1
Q ss_pred HHHHHhHHhhhcccccccEEEEEEeC---CCCCCchHHHHHHHh-CCCCCCEEEEEecCCCCcCcccccccCCCceEEEE
Q psy9409 295 EVEKIGIERTWVELKNSDIIIYVQDA---RYDKHTDFDKKIIKN-FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLS 370 (472)
Q Consensus 295 ~~e~~~i~~~~~~~~~aD~il~v~D~---s~~~~~~~~~~il~~-l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vS 370 (472)
..+..+.......+..+|+ +++|- .+... ..+.+.+.. +..+.|++++.||.........+....+..++.+
T Consensus 81 gle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~- 156 (174)
T PRK13695 81 DLERIGIPALERALEEADV--IIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL- 156 (174)
T ss_pred HHHHHHHHHHHhccCCCCE--EEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEE-
Confidence 4555556666667778888 57773 22211 223333333 3567899999999654332333444555556655
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
+.+|-+++...+.+.+
T Consensus 157 --~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 --TPENRDSLPFEILNRL 172 (174)
T ss_pred --cchhhhhHHHHHHHHH
Confidence 5567778888777654
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.80 E-value=6.7e-06 Score=76.67 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=52.4
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC-chHHHHHHHhCCCCCCEEEEEecC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH-TDFDKKIIKNFPMNIPVIYVWNKI 349 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~-~~~~~~il~~l~~~~piivV~NK~ 349 (472)
++.++|+||||..... .+.++. +....... ..+-+++|+|++.... ......+.+.+ .+-=++++|.
T Consensus 83 ~~D~vlIDT~Gr~~~d------~~~~~e--l~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~---~~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD------EELLEE--LKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAF---GIDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSSTH------HHHHHH--HHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHS---STCEEEEEST
T ss_pred CCCEEEEecCCcchhh------HHHHHH--HHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcc---cCceEEEEee
Confidence 4679999999976540 122222 22333333 5788999999987521 11233333333 2335679999
Q ss_pred CCCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 350 DYSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 350 Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
|...... .+....+.|+-.+| +|.++++
T Consensus 151 Det~~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 151 DETARLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp TSSSTTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred cCCCCcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 9866554 22334566666666 4555533
No 401
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=9.9e-05 Score=76.91 Aligned_cols=142 Identities=19% Similarity=0.178 Sum_probs=75.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC--------CcceecccCce----------------eeeEEEEE-------EEeCCe
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS--------DVAIVTSIAGT----------------TRDKITKT-------IQINKF 272 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~--------~~~~v~~~~gt----------------t~d~~~~~-------~~~~~~ 272 (472)
+-.++++|++||||||++..|... .+..++..+.. ........ -...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 457899999999999988876532 22222222110 00000000 012346
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~ 352 (472)
.++|+||||..... ....+. +...........-+.+|++++.. ......+.+.+..-.+--+++||.|-.
T Consensus 301 DlVlIDt~G~~~~d------~~~~~~--L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~~~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRD------KRLIEE--LKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLPLDGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCC------HHHHHH--HHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCCCCEEEEeccccc
Confidence 89999999976430 112222 22222212234566778887653 334455555553222346899999986
Q ss_pred cCccc---ccccCCCceEEEEeccCccH
Q psy9409 353 GHQKN---INYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 353 ~~~~~---~~~~~~~~~i~vSA~~g~gi 377 (472)
..... +....+.|+..++ +|.++
T Consensus 371 ~~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 371 SSLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ccccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 55432 2334466766666 45554
No 402
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00031 Score=80.30 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCccee-------cccCceeeeEEEEEE
Q psy9409 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV-------TSIAGTTRDKITKTI 267 (472)
Q Consensus 195 ~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v-------~~~~gtt~d~~~~~~ 267 (472)
.++..+..+..+.++.........+.+..-+=-+++|+||+||||++.-- |.++.+. ...+| |+++
T Consensus 96 ~~l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~c----- 168 (1188)
T COG3523 96 EELNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNC----- 168 (1188)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccchhhcCCceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-Cccc-----
Confidence 44555555555444443333321222222233688899999999988753 2222211 11222 2322
Q ss_pred Ee-CCeeEEEEeCCCCCcccc-ccccchhHHH-HHhHHhhhcccccccEEEEEEeCCCCCCch-------------HHHH
Q psy9409 268 QI-NKFLFKITDTAGIPDINS-KIKKNINEVE-KIGIERTWVELKNSDIIIYVQDARYDKHTD-------------FDKK 331 (472)
Q Consensus 268 ~~-~~~~i~liDTpG~~~~~~-~~~~~~~~~e-~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-------------~~~~ 331 (472)
++ -+..-+++||+|-..... ........+. -++.-+.....+-.|+||+.+|+++..... -+.+
T Consensus 169 dwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~E 248 (1188)
T COG3523 169 DWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQE 248 (1188)
T ss_pred CcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 22 234578999999665410 0000011111 122223444566789999999988752211 2344
Q ss_pred HHHhCCCCCCEEEEEecCCCCcC
Q psy9409 332 IIKNFPMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 332 il~~l~~~~piivV~NK~Dl~~~ 354 (472)
+...+.-..|+.+++||.|+.+-
T Consensus 249 l~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 249 LRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHhhccCCceEEEEeccccccc
Confidence 55555678999999999999763
No 403
>KOG3859|consensus
Probab=97.73 E-value=5.8e-05 Score=72.02 Aligned_cols=131 Identities=19% Similarity=0.305 Sum_probs=81.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce---ecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCcccccccc--c-----
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI---VTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKK--N----- 292 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~---v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~--~----- 292 (472)
++|.-+|.+|.|||||++.|.+..+.. ....|+.........+.-.+ .++.++||.|+++.-.+..+ |
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyi 122 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYI 122 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHH
Confidence 589999999999999999999877632 12223322222222222233 36899999999875111110 0
Q ss_pred hhHH-----HHHhHHhhhcccc--cccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 293 INEV-----EKIGIERTWVELK--NSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 293 ~~~~-----e~~~i~~~~~~~~--~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
+... +.+-+++.+..+. +.++++|++.++....-....-.++.+.....+|-|+-|+|-....
T Consensus 123 daQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 123 DAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhhhhHHHHHHhhhhhHH
Confidence 1111 2233455554444 4789999999887644444555667777778888899999976554
No 404
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.00029 Score=68.87 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccCc---------e---eeeEEEEE-E-------------EeC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAG---------T---TRDKITKT-I-------------QIN 270 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~g---------t---t~d~~~~~-~-------------~~~ 270 (472)
.+-+++++|++|+||||++..+... ....++..+. + ..+.-... . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4468999999999999999987643 1111111110 0 00000000 0 112
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~D 350 (472)
++.+.++||||.... ..+.++. +..... ....|-+++|+|++.. ......+++.+..-.+-=+++||.|
T Consensus 154 ~~D~ViIDt~Gr~~~------~~~~l~e--l~~~~~-~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYR------ASETVEE--MIETMG-QVEPDYICLTLSASMK--SKDMIEIITNFKDIHIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcC------CHHHHHH--HHHHHh-hhCCCeEEEEEcCccC--HHHHHHHHHHhCCCCCCEEEEEeec
Confidence 568999999997643 0233443 222222 2345778999998753 2334445555544344578999999
Q ss_pred CCcCcc---cccccCCCceEEEEeccCccHH
Q psy9409 351 YSGHQK---NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 351 l~~~~~---~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
...... .+....+.|+..++ +|.++.
T Consensus 223 et~~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 223 ETASSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred CCCCccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 876544 23344566766666 455554
No 405
>PRK13796 GTPase YqeH; Provisional
Probab=97.64 E-value=0.00014 Score=74.47 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=57.7
Q ss_pred hhccccccc-EEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cc----cccCCC---ceEEE
Q psy9409 304 TWVELKNSD-IIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NI----NYKNNI---ANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD-~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~----~~~~~~---~~i~v 369 (472)
....+...| ++++|+|+.+.. ..+...+ .....+.|+++|+||+|+.+... .+ .+..+. .++.+
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~-~s~~~~L-~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN-GSWIPGL-HRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC-CchhHHH-HHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 455666666 999999998753 2233333 33224789999999999975321 11 122343 58999
Q ss_pred EeccCccHHHHHHHHHHHh
Q psy9409 370 SASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~ 388 (472)
||++|.|++++++.|.+..
T Consensus 140 SAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999997754
No 406
>KOG0459|consensus
Probab=97.63 E-value=0.00013 Score=73.14 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=97.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcce------------------------------ecccCceeeeEEEEEEEeC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI------------------------------VTSIAGTTRDKITKTIQIN 270 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~------------------------------v~~~~gtt~d~~~~~~~~~ 270 (472)
.+.+++++++|..-+||||+-..++...... -....|.|...-...+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4577899999999999999988876521100 0112345566666777777
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC---ch-----HHHHHHHhCCCCCCE
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH---TD-----FDKKIIKNFPMNIPV 342 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~---~~-----~~~~il~~l~~~~pi 342 (472)
...+.+.|+||+-.+ +.....-..+||+.++|+++...+. ++ .-..++.....-...
T Consensus 156 ~~~ftiLDApGHk~f---------------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~l 220 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSF---------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHL 220 (501)
T ss_pred ceeEEeeccCccccc---------------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceE
Confidence 789999999999887 3334456678999999999865421 11 111122222245678
Q ss_pred EEEEecCCCCcCcc------c--------cc-----ccCCCceEEEEeccCccHHHHHH
Q psy9409 343 IYVWNKIDYSGHQK------N--------IN-----YKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 343 ivV~NK~Dl~~~~~------~--------~~-----~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
|+++||+|-...+. . +. -.....++++|..+|.++.+..+
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 99999999765432 0 00 01234489999999999998876
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.61 E-value=0.00044 Score=71.94 Aligned_cols=97 Identities=21% Similarity=0.172 Sum_probs=54.0
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCCCCCCEEEEEecC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFPMNIPVIYVWNKI 349 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~~~~piivV~NK~ 349 (472)
++.++|+||||....+ ...++. +..... .-..|-+++|+|+...... .....+.+.+ ...=+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~d------~~l~~e--L~~i~~-~~~p~e~lLVvda~tgq~~~~~a~~f~~~v---~i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQID------EELMEE--LAAIKE-ILNPDEILLVVDAMTGQDAVNTAKTFNERL---GLTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCccccC------HHHHHH--HHHHHH-hhCCceEEEEEeccchHHHHHHHHHHHhhC---CCCEEEEeCc
Confidence 4679999999965430 222232 222222 3357888999998754211 1222222222 2345779999
Q ss_pred CCCcCcc---cccccCCCceEEEEeccCccHHHHH
Q psy9409 350 DYSGHQK---NINYKNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 350 Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~ 381 (472)
|-..... .+....+.|+.+++. |+.+++|.
T Consensus 250 D~~~~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl~ 282 (428)
T TIGR00959 250 DGDARGGAALSVRSVTGKPIKFIGV--GEKIDDLE 282 (428)
T ss_pred cCcccccHHHHHHHHHCcCEEEEeC--CCChhhCc
Confidence 9654333 334456778777765 55565554
No 408
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.61 E-value=0.00058 Score=62.08 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=41.6
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCCCCCCEEEEEecC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFPMNIPVIYVWNKI 349 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~~~~piivV~NK~ 349 (472)
++.+.++||||.... ..+.++.+ .... .....|.+++|+|+...... +....+.+.. + ..-+|+||.
T Consensus 82 ~~d~viiDt~g~~~~------~~~~l~~l--~~l~-~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~--~-~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI------DENLMEEL--KKIK-RVVKPDEVLLVVDAMTGQDAVNQAKAFNEAL--G-ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh------hHHHHHHH--HHHH-hhcCCCeEEEEEECCCChHHHHHHHHHHhhC--C-CCEEEEECC
Confidence 457899999997643 02233332 1111 22348999999998654211 1222222222 2 356788999
Q ss_pred CCCcCcc
Q psy9409 350 DYSGHQK 356 (472)
Q Consensus 350 Dl~~~~~ 356 (472)
|......
T Consensus 150 D~~~~~g 156 (173)
T cd03115 150 DGDARGG 156 (173)
T ss_pred cCCCCcc
Confidence 9876543
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.58 E-value=0.00035 Score=65.63 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=42.3
Q ss_pred eeEEEEeC-CCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC--CchHHHHHHHhCCCCCCEEEEEec
Q psy9409 272 FLFKITDT-AGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK--HTDFDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 272 ~~i~liDT-pG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~--~~~~~~~il~~l~~~~piivV~NK 348 (472)
+.++++|| +|+..+ .....+.+|.+|.|+|++... +.....++.+.+. -+++.+|+||
T Consensus 134 ~e~VivDtEAGiEHf------------------gRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg-~k~i~~V~NK 194 (255)
T COG3640 134 YEVVIVDTEAGIEHF------------------GRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG-IKRIFVVLNK 194 (255)
T ss_pred CcEEEEecccchhhh------------------ccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-CceEEEEEee
Confidence 34677777 555544 234567899999999999752 1224445555443 4889999999
Q ss_pred CCCC
Q psy9409 349 IDYS 352 (472)
Q Consensus 349 ~Dl~ 352 (472)
+|-.
T Consensus 195 v~e~ 198 (255)
T COG3640 195 VDEE 198 (255)
T ss_pred ccch
Confidence 9965
No 410
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0019 Score=57.43 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=80.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCC-CCCcc-----ccc---ccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTA-GIPDI-----NSK---IKK 291 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTp-G~~~~-----~~~---~~~ 291 (472)
..+||.+.|+|||||||++..+...=.. ...+-.-++...+.-+|. .+.++|.. |-... .+. .++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~----~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE----KGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh----cCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 4579999999999999999987742110 000111122222223332 35566655 21110 000 000
Q ss_pred --chhHHHHHhHHhhhcccccccEEEEEEeCCCC---CCchHHHHHHHhCCCCCCEEEEEecCCCCcCcccccccCCCce
Q psy9409 292 --NINEVEKIGIERTWVELKNSDIIIYVQDARYD---KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN 366 (472)
Q Consensus 292 --~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~---~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~ 366 (472)
-.+..+..++.....+++.||++++ |--.+ .+......+-+.+..++|++.++-+-+..+--+.+....+ -+
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~-v~ 156 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG-VY 156 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC-EE
Confidence 0344455555555556677887764 53332 1111222222334678899998887765332223332222 22
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+. .|-.|-+.+...+...+.
T Consensus 157 v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 157 VF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred EE---EccchhhHHHHHHHHHhc
Confidence 22 566677788888877664
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00073 Score=70.35 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=52.9
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCC-CEEEEEecC
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI-PVIYVWNKI 349 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~-piivV~NK~ 349 (472)
++.++|+||||....+ ....+. +...... -..+-+++|+|+... .+ .....+.+.... ..-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~d------~~lm~e--L~~i~~~-v~p~evllVlda~~g--q~-av~~a~~F~~~~~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHID------EELMDE--LKAIKAA-VNPDEILLVVDAMTG--QD-AVNTAKAFNEALGLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCcccC------HHHHHH--HHHHHHh-hCCCeEEEEEecccH--HH-HHHHHHHHHhhCCCCEEEEeCc
Confidence 4679999999965430 222222 1122222 256778999998653 12 112222221122 245788999
Q ss_pred CCCcCcc---cccccCCCceEEEEeccCccHHHHH
Q psy9409 350 DYSGHQK---NINYKNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 350 Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~ 381 (472)
|-..... .+....+.|+.+++. |+++++|.
T Consensus 251 D~~~rgG~alsi~~~~~~PI~fig~--Ge~v~DLe 283 (433)
T PRK10867 251 DGDARGGAALSIRAVTGKPIKFIGT--GEKLDDLE 283 (433)
T ss_pred cCcccccHHHHHHHHHCcCEEEEeC--CCccccCc
Confidence 9654332 234456778777765 55555554
No 412
>PRK01889 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.00039 Score=70.92 Aligned_cols=80 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred ccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc----cccc-cCCCceEEEEeccCccHHHH
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK----NINY-KNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~----~~~~-~~~~~~i~vSA~~g~gi~~L 380 (472)
...++|.+++|+++...-.......++..+ ..+.|.++|+||+||.+... .+.. ..+.+++.+|+++|.|+++|
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVL 188 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHH
Confidence 367899999999997432222444444333 25678899999999986532 1111 34678999999999999999
Q ss_pred HHHHHH
Q psy9409 381 RNTLLD 386 (472)
Q Consensus 381 ~~~l~~ 386 (472)
.+++..
T Consensus 189 ~~~L~~ 194 (356)
T PRK01889 189 AAWLSG 194 (356)
T ss_pred HHHhhc
Confidence 999863
No 413
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.00097 Score=65.99 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccC--------------ceeeeEEEEE-------EE-------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIA--------------GTTRDKITKT-------IQ------- 268 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~--------------gtt~d~~~~~-------~~------- 268 (472)
.++.++++|-.|+||||.+-.|... .+.+..-.. -...+.+... +-
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 3667899999999999999887642 111100000 0111222211 00
Q ss_pred -eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccccccc-----EEEEEEeCCCCCC-chHHHHHHHhCCCCCC
Q psy9409 269 -INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD-----IIIYVQDARYDKH-TDFDKKIIKNFPMNIP 341 (472)
Q Consensus 269 -~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD-----~il~v~D~s~~~~-~~~~~~il~~l~~~~p 341 (472)
-.++.+.|+||+|-... + .+.++. +++....+...+ =+++++|++.+.. ..+.+.+-+..+ -
T Consensus 218 kar~~DvvliDTAGRLhn--k----~nLM~E--L~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~---l 286 (340)
T COG0552 218 KARGIDVVLIDTAGRLHN--K----KNLMDE--LKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG---L 286 (340)
T ss_pred HHcCCCEEEEeCcccccC--c----hhHHHH--HHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC---C
Confidence 13467999999996654 1 333333 233333444444 4889999998732 223333332221 1
Q ss_pred EEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHHH
Q psy9409 342 VIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 342 iivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
-=+++||+|-...-. .+....+.|+.++-. |+++++|..
T Consensus 287 ~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGv--GE~~~DL~~ 328 (340)
T COG0552 287 DGIILTKLDGTAKGGIILSIAYELGIPIKFIGV--GEGYDDLRP 328 (340)
T ss_pred ceEEEEecccCCCcceeeeHHHHhCCCEEEEeC--CCChhhccc
Confidence 247899999433322 456677888888764 667777654
No 414
>KOG0469|consensus
Probab=97.31 E-value=0.00029 Score=72.22 Aligned_cols=111 Identities=29% Similarity=0.378 Sum_probs=69.0
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceee------eEEEEEE-------------------------EeCCeeE
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR------DKITKTI-------------------------QINKFLF 274 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~------d~~~~~~-------------------------~~~~~~i 274 (472)
++.++.+..-|||||...|..+..-+.....|-|| |..+..+ +.++.-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 57788899999999999998754432222332221 1111111 1124568
Q ss_pred EEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHH-HhCCCCCCEEEEEecCCCC
Q psy9409 275 KITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKII-KNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 275 ~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il-~~l~~~~piivV~NK~Dl~ 352 (472)
.++|.||+.++ ..+ .-..++-.|..|+|+|.-++-.-+ .+.++ +.+...+.-++|.||+|..
T Consensus 101 NLIDSPGHVDF-------SSE--------VTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDF-------SSE--------VTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccc-------hhh--------hhheeEeccCcEEEEEccCceEec-hHHHHHHHHHhhccceEEeehhhHH
Confidence 99999999998 333 334778899999999988762222 12222 2234444446899999964
No 415
>PRK01889 GTPase RsgA; Reviewed
Probab=97.24 E-value=0.00026 Score=72.23 Aligned_cols=61 Identities=30% Similarity=0.469 Sum_probs=39.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccC-------ceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-------GTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-------gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..+-+++++|.+|+|||||+|.|++.....++... .+|+.. ....+.+ ...++||||+...
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~--~l~~l~~-~~~l~DtpG~~~~ 260 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHR--ELHPLPS-GGLLIDTPGMREL 260 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhc--cEEEecC-CCeecCCCchhhh
Confidence 34568999999999999999999986544333322 122221 1122222 2358899998765
No 416
>KOG1533|consensus
Probab=97.23 E-value=0.00011 Score=68.81 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=66.7
Q ss_pred CEEEEEecCCCchhHHHHhhh------CCCcceecccCceeeeEEEEEE-------------------------------
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAGTTRDKITKTI------------------------------- 267 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~gtt~d~~~~~~------------------------------- 267 (472)
+-.+++||||+||||..+-.. |+.+.+|.-.|+.....++..+
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence 446899999999999988653 4555555544433211111111
Q ss_pred ---E-------eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccE---EEEEEeCCCC-CCchHHHH--
Q psy9409 268 ---Q-------INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDI---IIYVQDARYD-KHTDFDKK-- 331 (472)
Q Consensus 268 ---~-------~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~---il~v~D~s~~-~~~~~~~~-- 331 (472)
+ -......++|.||+.+...+ ++.... ....+.+-|. ++-++|.--- +.......
T Consensus 83 ~~idwl~~~l~~~~~~Y~lFDcPGQVELft~----h~~l~~-----I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL 153 (290)
T KOG1533|consen 83 ANIDWLLEKLKPLTDHYVLFDCPGQVELFTH----HDSLNK-----IFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLL 153 (290)
T ss_pred hhhHHHHHHhhhccCcEEEEeCCCcEEEEec----cchHHH-----HHHHHHHcCceEEEEEeeeceeeCChHHHHHHHH
Confidence 1 11235789999999886332 333333 2222333343 4444453211 11122222
Q ss_pred --HHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 332 --IIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 332 --il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
+...+....|-+=|+.|+|+.....
T Consensus 154 ~sl~tMl~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 154 VSLATMLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHHHHHhhcccchhhhhHhHHHHhhc
Confidence 2222246789999999999987654
No 417
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.20 E-value=0.00086 Score=67.35 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred eeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC----------ch--
Q psy9409 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH----------TD-- 327 (472)
Q Consensus 260 ~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~----------~~-- 327 (472)
.......+.+++..+.+||++|.+.. . .....++.+++++++|+|.++.+. ..
T Consensus 149 ~Gi~~~~f~~~~~~~~~~DvgGq~~~-------R--------~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~es 213 (317)
T cd00066 149 TGIVETKFTIKNLKFRMFDVGGQRSE-------R--------KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQES 213 (317)
T ss_pred CCeeEEEEEecceEEEEECCCCCccc-------c--------hhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHH
Confidence 34455667778899999999998876 2 234457789999999999987421 11
Q ss_pred --HHHHHHHhCC-CCCCEEEEEecCCCCcCcccccccCCCceEEEEecc--CccHHHHHHHHHHHhh
Q psy9409 328 --FDKKIIKNFP-MNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASK--RIGINLLRNTLLDLIE 389 (472)
Q Consensus 328 --~~~~il~~l~-~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~--g~gi~~L~~~l~~~~~ 389 (472)
.+..+++.-. .+.|+++++||.|+....- ....-..+ ....+ +..+++..+++...+.
T Consensus 214 l~~f~~i~~~~~~~~~pill~~NK~D~f~~ki--~~~~l~~~--fp~y~g~~~~~~~~~~~i~~~F~ 276 (317)
T cd00066 214 LNLFDSICNSRWFANTSIILFLNKKDLFEEKI--KKSPLTDY--FPDYTGPPNDYEEAAKFIRKKFL 276 (317)
T ss_pred HHHHHHHHhCccccCCCEEEEccChHHHHHhh--cCCCcccc--CCCCCCCCCCHHHHHHHHHHHHH
Confidence 2233332211 5789999999999876432 11000001 11112 3578889999988874
No 418
>KOG1534|consensus
Probab=97.12 E-value=0.00072 Score=62.37 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=73.9
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC-CCchHHHHHHHhC----CCCCCEEEEEe
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD-KHTDFDKKIIKNF----PMNIPVIYVWN 347 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~-~~~~~~~~il~~l----~~~~piivV~N 347 (472)
.+.++|.||+.+..++.+--...++.+ .. ..--=++++++|..-. +++....-.+..+ ....|.|=|++
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl-----~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHL-----KQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHH-----hc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 588999999998755433323333332 11 1112346677765432 2222222222222 36789999999
Q ss_pred cCCCCcCcc--cccccCCCc---eEEEEeccCc---cHHHHHHHHHHHhhccCCCCCCcccccHHHHHHHHHHHHHHHHH
Q psy9409 348 KIDYSGHQK--NINYKNNIA---NIYLSASKRI---GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANYYLSCA 419 (472)
Q Consensus 348 K~Dl~~~~~--~~~~~~~~~---~i~vSA~~g~---gi~~L~~~l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~l~~~ 419 (472)
|+||..... .+.+..++. .+..|- .+. -..+|...+...+..-.-- .-.+...+..+.++.++.+++.+
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~-~~~~s~Kf~~L~~~i~~~v~d~~Mv--~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSE-INLRSPKFKKLTKCIAQLVDDYSMV--NFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccc-cccccHHHHHHHHHHHHHhccccce--eeeecCCCCHHHHHHHHHHHHHH
Confidence 999987632 233332221 222221 122 2666777777766421110 11233444566677888888887
Q ss_pred HH
Q psy9409 420 IK 421 (472)
Q Consensus 420 ~~ 421 (472)
.+
T Consensus 250 iQ 251 (273)
T KOG1534|consen 250 IQ 251 (273)
T ss_pred HH
Confidence 76
No 419
>KOG0705|consensus
Probab=97.09 E-value=0.0011 Score=68.76 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=96.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..+|++|+|..++|||+|+.+++...+.. ...|-..+...+.......+-+.+-|-.|..+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~------------------ 89 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD------------------ 89 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCch------------------
Confidence 45799999999999999999988766532 33333334333333333445566667777222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-----CCCCEEEEEecCCCCcCcc----------cccccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-----MNIPVIYVWNKIDYSGHQK----------NINYKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-----~~~piivV~NK~Dl~~~~~----------~~~~~~~~~~i 367 (472)
.++....|++||||...+..+++....+...+. ...|+++|+++.=...... ...+...+.++
T Consensus 90 --aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~ 167 (749)
T KOG0705|consen 90 --AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYY 167 (749)
T ss_pred --hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcccee
Confidence 235667899999999988877765555544442 4567777777643322211 12334557799
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
+.++.+|.++...|+.+....
T Consensus 168 et~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 168 ETCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred ecchhhhhhHHHHHHHHHHHH
Confidence 999999999999999887765
No 420
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.08 E-value=0.0025 Score=63.85 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=80.7
Q ss_pred EEEEecCCCchhHHHHhhhCCCc----ce-ecccCceeee-------EEEEEEEe------------------------C
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDV----AI-VTSIAGTTRD-------KITKTIQI------------------------N 270 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~----~~-v~~~~gtt~d-------~~~~~~~~------------------------~ 270 (472)
.+|-|.=|+|||||+|.|+.+.. ++ |.+.--...| .-...+++ +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 56789999999999999986432 21 1111111111 00011111 1
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchH--HHHHHHhCCCCCCEEEEEec
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF--DKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~--~~~il~~l~~~~piivV~NK 348 (472)
+....+|.|-|+.+. ...++.......+...-..|.++-|+|+........ ...+..++ ..--++|+||
T Consensus 84 ~~D~ivIEtTGlA~P-------~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi--a~AD~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADP-------APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL--AFADVIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCC-------HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH--HhCcEEEEec
Confidence 235789999998875 455544322222233445788999999987532221 12233333 1234899999
Q ss_pred CCCCcCcc------cccc-cCCCceEEEEeccCccHHHHHH
Q psy9409 349 IDYSGHQK------NINY-KNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 349 ~Dl~~~~~------~~~~-~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
.|+.++.. .+.+ ....+++.+|. .+....++++
T Consensus 155 ~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 155 TDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 99998764 1111 23456777776 3444444443
No 421
>KOG0781|consensus
Probab=97.02 E-value=0.0047 Score=63.51 Aligned_cols=152 Identities=16% Similarity=0.254 Sum_probs=84.2
Q ss_pred HHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhh----CCCcce--ec--c------------------cCceeeeEEE
Q psy9409 211 IIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV----GSDVAI--VT--S------------------IAGTTRDKIT 264 (472)
Q Consensus 211 ~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~----~~~~~~--v~--~------------------~~gtt~d~~~ 264 (472)
+++.-...+..+.++.|+++|-.||||||-+-.+. .+.+.. .. . ..++-....+
T Consensus 365 lLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfe 444 (587)
T KOG0781|consen 365 LLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFE 444 (587)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHh
Confidence 33444444555688999999999999999888754 333321 00 0 0000000000
Q ss_pred EEE---------------EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC-CCchH
Q psy9409 265 KTI---------------QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD-KHTDF 328 (472)
Q Consensus 265 ~~~---------------~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~-~~~~~ 328 (472)
.-+ .-+|+.++|+||+|-+... ...+.. + .-+......|.+++|=.+--+ ++.+.
T Consensus 445 kGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~------~~lm~~--l-~k~~~~~~pd~i~~vgealvg~dsv~q 515 (587)
T KOG0781|consen 445 KGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNN------APLMTS--L-AKLIKVNKPDLILFVGEALVGNDSVDQ 515 (587)
T ss_pred hhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCC------hhHHHH--H-HHHHhcCCCceEEEehhhhhCcHHHHH
Confidence 000 1145789999999976541 111111 1 122345679999999765433 23344
Q ss_pred HHHHHHhCC-CCCC---EEEEEecCCCCcCcc----cccccCCCceEEEEe
Q psy9409 329 DKKIIKNFP-MNIP---VIYVWNKIDYSGHQK----NINYKNNIANIYLSA 371 (472)
Q Consensus 329 ~~~il~~l~-~~~p---iivV~NK~Dl~~~~~----~~~~~~~~~~i~vSA 371 (472)
...+-+.+. ...| --++++|+|-.+... .+.-..+.|++++-+
T Consensus 516 ~~~fn~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~ 566 (587)
T KOG0781|consen 516 LKKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGV 566 (587)
T ss_pred HHHHHHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEec
Confidence 455544443 2223 357899999887654 222345678777653
No 422
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.02 E-value=0.005 Score=61.83 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=64.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCC----cceecccCc-eeee------EEEEEEEeC------------------------
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSD----VAIVTSIAG-TTRD------KITKTIQIN------------------------ 270 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~----~~~v~~~~g-tt~d------~~~~~~~~~------------------------ 270 (472)
-.+|.|.-|+|||||+|.++... .+++.+.-| +..| .....+++.
T Consensus 6 v~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~ 85 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLD 85 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHh
Confidence 46788999999999999998542 222222222 1110 000111111
Q ss_pred ----CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCCCCCCEEEE
Q psy9409 271 ----KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFPMNIPVIYV 345 (472)
Q Consensus 271 ----~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~~~~piivV 345 (472)
....+++.|.|+.+. ....+...........-..|.++.|+|+...... ........++ ..--++|
T Consensus 86 ~~~~~~d~IvIEttG~a~p-------~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi--~~AD~Iv 156 (318)
T PRK11537 86 KGNIQFDRLVIECTGMADP-------GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV--GYADRIL 156 (318)
T ss_pred ccCCCCCEEEEECCCccCH-------HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH--HhCCEEE
Confidence 134688999998765 4433332111111222246889999999764211 1111122222 1224889
Q ss_pred EecCCCCcCcc
Q psy9409 346 WNKIDYSGHQK 356 (472)
Q Consensus 346 ~NK~Dl~~~~~ 356 (472)
+||+|+.....
T Consensus 157 lnK~Dl~~~~~ 167 (318)
T PRK11537 157 LTKTDVAGEAE 167 (318)
T ss_pred EeccccCCHHH
Confidence 99999987543
No 423
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.016 Score=59.41 Aligned_cols=169 Identities=16% Similarity=0.197 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHh-hhhHHh-hhCCCEEEEEecCCCchhHHHHhhhC------CCcceecc---cCc----------
Q psy9409 199 NELIKIKKKLLKIIQQ-GKKRAL-IRNGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTS---IAG---------- 257 (472)
Q Consensus 199 ~~l~~l~~~l~~~~~~-~~~~~~-~~~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~---~~g---------- 257 (472)
.-+.-+.++|-+++-. ...... .+.+..|.++|--|+||||..-.|.. ..+..|+. .|.
T Consensus 73 ~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~ 152 (451)
T COG0541 73 QFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE 152 (451)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH
Confidence 3455667777777764 211111 23456789999999999998877653 22221111 010
Q ss_pred -eeeeEEEE-----EE----------EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC
Q psy9409 258 -TTRDKITK-----TI----------QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321 (472)
Q Consensus 258 -tt~d~~~~-----~~----------~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s 321 (472)
+..+++.. .+ ...++.+.|+||+|-.... .+..+. + ......-+.|=+|+|+|+.
T Consensus 153 q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~id------e~Lm~E--l-~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 153 QVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHID------EELMDE--L-KEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccccc------HHHHHH--H-HHHHhhcCCCeEEEEEecc
Confidence 11111111 00 0123579999999955430 222222 1 1223455789999999998
Q ss_pred CCCCchHHHHHHHhCCCCCCE-EEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHH
Q psy9409 322 YDKHTDFDKKIIKNFPMNIPV-IYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 322 ~~~~~~~~~~il~~l~~~~pi-ivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~ 381 (472)
.+... ....+.+....++ =+|++|.|-...-. ......+.|+-++. +|+.+++|-
T Consensus 224 ~GQdA---~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiG--tGEki~dLE 282 (451)
T COG0541 224 IGQDA---VNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKFIG--TGEKIDDLE 282 (451)
T ss_pred cchHH---HHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEe--cCCCcccCC
Confidence 76322 2222222223332 47899999654332 23345577777766 455555554
No 424
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.89 E-value=0.0003 Score=64.51 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=62.5
Q ss_pred EEEEEecCCCchhHHHHhhhC-----CCcceecccCc-eeee--------EEEEEEE---------------------eC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG-----SDVAIVTSIAG-TTRD--------KITKTIQ---------------------IN 270 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~-----~~~~~v~~~~g-tt~d--------~~~~~~~---------------------~~ 270 (472)
-+++.|..|+|||||++.++. .+.+++.+.-| ...| .....+. ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 368899999999999999992 33333222222 1100 0011110 01
Q ss_pred --CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-HHHHHHHhCCCCCCEEEEEe
Q psy9409 271 --KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIPVIYVWN 347 (472)
Q Consensus 271 --~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~~piivV~N 347 (472)
.....++.|.|..+. ...... .......-..+.++.|+|+....... .-..+..++. .--++|+|
T Consensus 82 ~~~~d~IiIE~sG~a~p-------~~l~~~---~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--~ADvIvln 149 (178)
T PF02492_consen 82 EERPDRIIIETSGLADP-------APLILQ---DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--FADVIVLN 149 (178)
T ss_dssp HGC-SEEEEEEECSSGG-------GGHHHH---SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--T-SEEEEE
T ss_pred CCCcCEEEECCcccccc-------chhhhc---cccccccccccceeEEeccccccccccchhhhhhcch--hcCEEEEe
Confidence 246889999997765 332111 12222334578999999996531111 1122222221 22378999
Q ss_pred cCCCCcCc
Q psy9409 348 KIDYSGHQ 355 (472)
Q Consensus 348 K~Dl~~~~ 355 (472)
|+|+.+..
T Consensus 150 K~D~~~~~ 157 (178)
T PF02492_consen 150 KIDLVSDE 157 (178)
T ss_dssp -GGGHHHH
T ss_pred ccccCChh
Confidence 99998765
No 425
>KOG0780|consensus
Probab=96.78 E-value=0.012 Score=59.27 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=40.2
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-HHHHHHHhCCCCCCEEEEEec
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~~piivV~NK 348 (472)
+++.++|+||.|-... .....+. ...... .-..|-+|+|+|++-+.... ....+-+... + --+++||
T Consensus 182 e~fdvIIvDTSGRh~q------e~sLfeE--M~~v~~-ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd--v-g~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ------EASLFEE--MKQVSK-AIKPDEIIFVMDASIGQAAEAQARAFKETVD--V-GAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCchhh------hHHHHHH--HHHHHh-hcCCCeEEEEEeccccHhHHHHHHHHHHhhc--c-ceEEEEe
Confidence 4578999999995543 0222222 111222 23489999999999764322 2333322221 1 2467889
Q ss_pred CCCCc
Q psy9409 349 IDYSG 353 (472)
Q Consensus 349 ~Dl~~ 353 (472)
.|-..
T Consensus 250 lDGha 254 (483)
T KOG0780|consen 250 LDGHA 254 (483)
T ss_pred cccCC
Confidence 88644
No 426
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.77 E-value=0.005 Score=58.28 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=60.9
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc------hHHHHHHHhCCCCCCEEE
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT------DFDKKIIKNFPMNIPVIY 344 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~------~~~~~il~~l~~~~piiv 344 (472)
++.++|+||+|.... .....+..+|++|+=+-.+..+.. .+..+..+......|.-+
T Consensus 83 ~~d~VlvDleG~as~-----------------~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~V 145 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE-----------------LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAV 145 (231)
T ss_pred CCCEEEEeCCCCCch-----------------hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeE
Confidence 467899999997654 122245679999887665543221 133444444467899999
Q ss_pred EEecCCCCcCcc---cccc-cCCCceEEEEeccCccHHHHHH
Q psy9409 345 VWNKIDYSGHQK---NINY-KNNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 345 V~NK~Dl~~~~~---~~~~-~~~~~~i~vSA~~g~gi~~L~~ 382 (472)
++|++.-..... .+.+ ..+.|++.++......+.+++.
T Consensus 146 l~Tr~~~~~~~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 146 LFTRVPAARLTRAQRIISEQLESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred EEecCCcchhhHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 999997432221 1111 2357888888888877777776
No 427
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.72 E-value=0.0051 Score=55.89 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=62.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeC-CCCCcccc---------ccccc-
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDT-AGIPDINS---------KIKKN- 292 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDT-pG~~~~~~---------~~~~~- 292 (472)
+|.|.|+||+|||||++.++..-...--...| ++...+.-+|. .+.++|. .|-..... ..+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G----f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG----FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE----EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce----EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence 58999999999999999987542110001111 11111111221 2344444 12110000 00000
Q ss_pred -hhHHHHHhHHhhhcccccccEEEEEEeCCCC---CCchHHHHHHHhCCCCCCEEEEEecCCCCcCcccccccCCCceEE
Q psy9409 293 -INEVEKIGIERTWVELKNSDIIIYVQDARYD---KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIY 368 (472)
Q Consensus 293 -~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~---~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~ 368 (472)
.+..+..++......+..+| ++|+|=-.+ .+..+...+.+.+..++|++.++-+.-..+--..+....+..++.
T Consensus 77 ~~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~ 154 (168)
T PF03266_consen 77 DLESFEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRRPDVKIFE 154 (168)
T ss_dssp -HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS--SCCHHHHHTTTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhCCCcEEEE
Confidence 12233332222222234555 777774433 122355555555677889999988883122222345555667777
Q ss_pred EEeccCcc
Q psy9409 369 LSASKRIG 376 (472)
Q Consensus 369 vSA~~g~g 376 (472)
++..+..-
T Consensus 155 vt~~NRd~ 162 (168)
T PF03266_consen 155 VTEENRDA 162 (168)
T ss_dssp --TTTCCC
T ss_pred eChhHHhh
Confidence 76655443
No 428
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.59 E-value=0.006 Score=44.54 Aligned_cols=40 Identities=38% Similarity=0.428 Sum_probs=22.9
Q ss_pred cccEEEEEEeCCCCCCch------HHHHHHHhCCCCCCEEEEEecCC
Q psy9409 310 NSDIIIYVQDARYDKHTD------FDKKIIKNFPMNIPVIYVWNKID 350 (472)
Q Consensus 310 ~aD~il~v~D~s~~~~~~------~~~~il~~l~~~~piivV~NK~D 350 (472)
-.++++|++|+|...-.. ...++...+ .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 378999999999763322 233333333 5899999999998
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.56 E-value=0.0088 Score=52.41 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=57.0
Q ss_pred EEecCCCchhHHHHhhhCC------CcceecccCc-eeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 229 LIGQPNVGKSSLFNSLVGS------DVAIVTSIAG-TTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~~------~~~~v~~~~g-tt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.-|.+|+||||+--.+... ....++-.++ ... .+.++++|||+.... .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~--------~------- 59 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISD--------N------- 59 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCH--------H-------
Confidence 4578999999987765532 1122221111 111 178999999985432 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~ 352 (472)
....+..+|.++++++.+... ......+++.+ ....++.+|+|+++-.
T Consensus 60 --~~~~l~~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 60 --VLDFFLAADEVIVVTTPEPTS-ITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred --HHHHHHhCCeEEEEcCCChhH-HHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 223567899999999988652 22222222222 2456788999999743
No 430
>PRK04195 replication factor C large subunit; Provisional
Probab=96.51 E-value=0.056 Score=57.58 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.-.+.|.|+||+||||++++|...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.48 E-value=0.013 Score=59.53 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
.++.|.-|+|||||+|.++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 678899999999999999854
No 432
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.44 E-value=0.013 Score=48.20 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEEEe-cCCCchhHHHHhhhCCC------cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 227 VVLIG-QPNVGKSSLFNSLVGSD------VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 227 V~ivG-~~nvGKSSLin~L~~~~------~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
|++.| ..|+||||+.-.|...- ...+.-.+. +.+.++|+|+....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~-------------- 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGL-------------- 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCH--------------
Confidence 56666 68999999877665321 111111111 67999999996543
Q ss_pred hHHhhhcccccccEEEEEEeCCCC
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
.....+..+|.++++++.+..
T Consensus 54 ---~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 54 ---LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred ---HHHHHHHHCCEEEEeccCCHH
Confidence 122355679999999988764
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.42 E-value=0.017 Score=46.05 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=45.8
Q ss_pred EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhc
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWV 306 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~ 306 (472)
+++.|.+|+||||+...+...-.. .+... .-++ .+.++|+|+.... .... ...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v------~~~~--d~iivD~~~~~~~-------~~~~-------~~~ 54 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV------LLID--DYVLIDTPPGLGL-------LVLL-------CLL 54 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE------EEEC--CEEEEeCCCCccc-------hhhh-------hhh
Confidence 678899999999999987654211 01000 0111 7899999997765 1100 133
Q ss_pred ccccccEEEEEEeCCCC
Q psy9409 307 ELKNSDIIIYVQDARYD 323 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~ 323 (472)
....+|.++++++.+..
T Consensus 55 ~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 55 ALLAADLVIIVTTPEAL 71 (99)
T ss_pred hhhhCCEEEEecCCchh
Confidence 55678999999998875
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.36 E-value=0.0024 Score=58.97 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=36.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEE
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKIT 277 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~li 277 (472)
+.-|+|+|++|+|||||+++|+..........+.|||.. ...+.+|....++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~--r~gE~~G~dY~fv 55 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP--RPGDEEGKTYFFL 55 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC--CCCCCCCceeEeC
Confidence 345899999999999999999887543334456677754 2334456666665
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.34 E-value=0.017 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
+..+.+.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998754
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0021 Score=58.50 Aligned_cols=53 Identities=30% Similarity=0.474 Sum_probs=37.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITD 278 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liD 278 (472)
.|.-++|.||+|||||||+++|+... ..--.+..|||.. ...+.+|....|++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p--R~gEv~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP--RPGEVDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC--CCCCcCCceeEeCC
Confidence 45668999999999999999999887 3323344566654 33445666666654
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.26 E-value=0.021 Score=56.22 Aligned_cols=169 Identities=12% Similarity=0.122 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCC
Q psy9409 202 IKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281 (472)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG 281 (472)
+++.+.++.++...+..+ -..++|+|++|.|||++++++....... .+ ++ ....+|..+.+|.
T Consensus 43 ~~~L~~L~~Ll~~P~~~R----mp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~-----------~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHR----MPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-ED-----------AERIPVVYVQMPP 105 (302)
T ss_pred HHHHHHHHHHHhCCcccC----CCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CC-----------CccccEEEEecCC
Confidence 344555566665543322 2569999999999999999998765432 11 11 0124788888876
Q ss_pred CCcc----------ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC---CC---chHHHHHHHhCC--CCCCEE
Q psy9409 282 IPDI----------NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD---KH---TDFDKKIIKNFP--MNIPVI 343 (472)
Q Consensus 282 ~~~~----------~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~---~~---~~~~~~il~~l~--~~~pii 343 (472)
--+. ...+..+.+..... .......++...+=++++|=-+. .+ .......++.+. ..+|+|
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~-~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKL-EQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHH-HHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 4332 00000111111111 22344567788888999985432 11 113344455543 578999
Q ss_pred EEEecCCC--CcCcccccccCCCceEEEE-eccCccHHHHHHHHHHHhhc
Q psy9409 344 YVWNKIDY--SGHQKNINYKNNIANIYLS-ASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 344 vV~NK~Dl--~~~~~~~~~~~~~~~i~vS-A~~g~gi~~L~~~l~~~~~~ 390 (472)
.||++-=. ...+.+++..+. .+.+. =+.+.....|+..+...++.
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF~--~~~Lp~W~~d~ef~~LL~s~e~~LPL 232 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRFE--PFELPRWELDEEFRRLLASFERALPL 232 (302)
T ss_pred EeccHHHHHHhccCHHHHhccC--CccCCCCCCCcHHHHHHHHHHHhCCC
Confidence 99876321 122223332221 11111 12456677777777777754
No 438
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.22 E-value=0.004 Score=56.78 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=34.1
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG 281 (472)
.|+|+|++|+|||||++.|.+...........+|+...... ..+..+.++++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 58999999999999999999865433233334555432221 3445555655433
No 439
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.19 E-value=0.0039 Score=54.58 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=33.5
Q ss_pred EEEEecCCCchhHHHHhhhCCCc-ceecccCceeeeEEEEEEEeCCeeEEEEeCCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDV-AIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~-~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG 281 (472)
|+|+|++|+|||||++.|..... ......+.+|+..... ..+|.++.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~--e~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG--EVDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCC--ccCCceeEEeCHHH
Confidence 68999999999999999997622 1122334455543221 24566666766444
No 440
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.17 E-value=0.017 Score=56.78 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=59.5
Q ss_pred ccccccEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCccc-------ccccCCCceEEEEeccCccH
Q psy9409 307 ELKNSDIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQKN-------INYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~~-------~~~~~~~~~i~vSA~~g~gi 377 (472)
.+.+.|-+++|+.+.+|+... .+..++-.. ..+..-++|+||+||.+.... .....+++++.+|++++.|+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 345578888888888875433 333333222 356777888999999976542 23346889999999999999
Q ss_pred HHHHHHHHHHh
Q psy9409 378 NLLRNTLLDLI 388 (472)
Q Consensus 378 ~~L~~~l~~~~ 388 (472)
++|.+.+....
T Consensus 156 ~~l~~~l~~~~ 166 (301)
T COG1162 156 EELAELLAGKI 166 (301)
T ss_pred HHHHHHhcCCe
Confidence 99999998876
No 441
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.16 E-value=0.0034 Score=59.00 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeee
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRD 261 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d 261 (472)
.+.-|+|+|++|+|||||++.|...........+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 445689999999999999999986543333444555553
No 442
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.13 E-value=0.016 Score=52.41 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred EEecCCCchhHHHHhhhC------CCcceecccCc-eeeeEE---EE--EEEe---CCeeEEEEeCCCCCccccccccch
Q psy9409 229 LIGQPNVGKSSLFNSLVG------SDVAIVTSIAG-TTRDKI---TK--TIQI---NKFLFKITDTAGIPDINSKIKKNI 293 (472)
Q Consensus 229 ivG~~nvGKSSLin~L~~------~~~~~v~~~~g-tt~d~~---~~--~~~~---~~~~i~liDTpG~~~~~~~~~~~~ 293 (472)
.-++.|+||||+.-.|.. .+...+.-.+. ...+.. .. ...+ -...++++|||+....
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------- 76 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------- 76 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--------
Confidence 345799999998877652 23333332221 111110 00 0001 0117999999985432
Q ss_pred hHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecCCCCc
Q psy9409 294 NEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKIDYSG 353 (472)
Q Consensus 294 ~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~Dl~~ 353 (472)
. ....+..+|.+|++++++... ......+++.+. ......+|+|++|...
T Consensus 77 ~---------~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 77 G---------FITAIAPADEALLVTTPEISS-LRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred H---------HHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 1 223456799999999888653 222222333221 2335678999998653
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0035 Score=59.73 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=-|+|+|++|||||||+|.+.|-..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334599999999999999999998653
No 444
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.10 E-value=0.023 Score=47.34 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=52.8
Q ss_pred EecCCCchhHHHHhhhCC-------CcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 230 IGQPNVGKSSLFNSLVGS-------DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 230 vG~~nvGKSSLin~L~~~-------~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
-++.|+||||+.-.|... +...++-.+.. +..++++|||+....
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~----------------- 56 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE----------------- 56 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----------------
Confidence 456899999977665432 22222222211 117899999996543
Q ss_pred hhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCC-C-CCCEEEEEec
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFP-M-NIPVIYVWNK 348 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~-~-~~piivV~NK 348 (472)
.+...+..+|.++++++.+.. +.. .+.+.++... . ..++.+|+|+
T Consensus 57 ~~~~~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 57 VSLAALDQADRVFLVTQQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHcCeEEEEecCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 122355778999999988765 222 2333333433 2 4567788886
No 445
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.10 E-value=0.012 Score=53.59 Aligned_cols=45 Identities=27% Similarity=0.243 Sum_probs=30.6
Q ss_pred cEEEEEEeCCCCCCc--hHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 312 DIIIYVQDARYDKHT--DFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 312 D~il~v~D~s~~~~~--~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
|++++|+|+..+... ..+.+.+.....++|+++|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHH
Confidence 799999999886322 233333221125689999999999976543
No 446
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.09 E-value=0.23 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..+.|.|+||+|||++++.+...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 447
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.06 E-value=0.059 Score=55.21 Aligned_cols=162 Identities=14% Similarity=0.247 Sum_probs=86.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC------------CcceecccC----ceeeeEE--------EEEEEeC---CeeE
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS------------DVAIVTSIA----GTTRDKI--------TKTIQIN---KFLF 274 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~------------~~~~v~~~~----gtt~d~~--------~~~~~~~---~~~i 274 (472)
...+=+++|||.-+|||||+.++... .++. ...| |.|.-+. ...+.++ ..++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~-DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERAR-DELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhh-hcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 34577999999999999999998741 1111 1111 2221111 1222332 2578
Q ss_pred EEEeCCCCCccccc-----------------cccchhHHHHHhHHhhhcccc-ccc-EEEEEEeCCCCCCc--h---HHH
Q psy9409 275 KITDTAGIPDINSK-----------------IKKNINEVEKIGIERTWVELK-NSD-IIIYVQDARYDKHT--D---FDK 330 (472)
Q Consensus 275 ~liDTpG~~~~~~~-----------------~~~~~~~~e~~~i~~~~~~~~-~aD-~il~v~D~s~~~~~--~---~~~ 330 (472)
.++|+.|+.-.... -..|.......|.++ .+. ++- .+++-.|.|-.+.. . .-.
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~K---VI~dHSTIGiVVTTDGSi~dipRe~Y~eAEe 170 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRK---VITDHSTIGIVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccc---eeccCCceeEEEecCCCccCCChHHHHHHHH
Confidence 89999886422000 012223333333222 222 222 44555565543211 1 223
Q ss_pred HHHHhCC-CCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 331 KIIKNFP-MNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 331 ~il~~l~-~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.++++++ -++|+++++|=.+=..... .+.+.++.|++++++..- .-+++...|.+.+
T Consensus 171 rvI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vL 233 (492)
T PF09547_consen 171 RVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVL 233 (492)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHH
Confidence 4444443 5899999999887544332 456678899999998542 3444554444444
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.05 E-value=0.0048 Score=57.57 Aligned_cols=27 Identities=44% Similarity=0.711 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..+-.|+|+|++|+|||||++.|.+..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 355679999999999999999998864
No 449
>KOG3887|consensus
Probab=96.04 E-value=0.019 Score=54.17 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=68.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcc----eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVA----IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~----~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.+|.++|..-+||||+-.....+-.. .+......|+|.+.. .-..+.+||.||+..+. .+....
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~----sfinf~v~dfPGQ~~~F------d~s~D~-- 95 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN----SFINFQVWDFPGQMDFF------DPSFDY-- 95 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh----hhcceEEeecCCccccC------CCccCH--
Confidence 67999999999999987766543211 111122223332221 22468899999998761 111111
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHH---HHh---CCCCCCEEEEEecCCCCcCcc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKN---FPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~---l~~~~piivV~NK~Dl~~~~~ 356 (472)
....+.+.+.++|+|+.+. -.+....+ +.. +.++..+=+.+.|.|-...+.
T Consensus 96 ----e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 96 ----EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred ----HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 1245788999999998763 11111111 111 136777889999999876653
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.94 E-value=0.0057 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 451
>KOG2749|consensus
Probab=95.93 E-value=0.028 Score=56.02 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.4
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+.|.+|+++|+.++|||||...|++
T Consensus 100 ~~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 100 SSYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred hccCCEEEEECCCccchHHHHHHHHH
Confidence 45789999999999999999998885
No 452
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.93 E-value=0.0062 Score=52.78 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..+-.++|+|++|+|||||++.|.+...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 4556799999999999999999999764
No 453
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.88 E-value=0.0053 Score=55.78 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.+=+|+|+|++|+|||||+|.+.|-..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 345799999999999999999998654
No 454
>KOG1424|consensus
Probab=95.75 E-value=0.013 Score=60.96 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=55.2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc--cccc---cCCCceEEEEecc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NINY---KNNIANIYLSASK 373 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~~---~~~~~~i~vSA~~ 373 (472)
+..+..+..+|+||.++|+.+|..+. .+...++.....+..++++||+||..+.. .+++ ..++++++-||..
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 34667889999999999999984332 55666666667788999999999998876 3333 3368899999876
No 455
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.068 Score=57.99 Aligned_cols=45 Identities=33% Similarity=0.478 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 201 LIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 201 l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
|++.++.|.+++.-.+.... ..|.-+|++||||||||||-+++..
T Consensus 328 LekVKeRIlEyLAV~~l~~~-~kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKK-LKGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred chhHHHHHHHHHHHHHHhcc-CCCcEEEEECCCCCCchhHHHHHHH
Confidence 35667777776665554433 2445699999999999999998864
No 456
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.69 E-value=0.018 Score=59.63 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=72.0
Q ss_pred eeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC--------c--
Q psy9409 258 TTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH--------T-- 326 (472)
Q Consensus 258 tt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~--------~-- 326 (472)
.|....+..+.+ ++.++.++|+.|++.. .++...++.+++++|||++.++-+. .
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~e---------------RkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl 285 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSE---------------RKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRL 285 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGG---------------GGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHH
T ss_pred CCCCeeEEEEEeecccccceecCCCCchh---------------hhhHHHHhccccEEEEeecccchhhhhcccchHHHH
Confidence 345566677888 9999999999999876 4456678889999999999875321 1
Q ss_pred ----hHHHHHHHhCC-CCCCEEEEEecCCCCcCccc----ccccCCCceEEEEeccC---ccHHHHHHHHHHHhh
Q psy9409 327 ----DFDKKIIKNFP-MNIPVIYVWNKIDYSGHQKN----INYKNNIANIYLSASKR---IGINLLRNTLLDLIE 389 (472)
Q Consensus 327 ----~~~~~il~~l~-~~~piivV~NK~Dl~~~~~~----~~~~~~~~~i~vSA~~g---~gi~~L~~~l~~~~~ 389 (472)
..+..+...-. .+.|+++++||.|+....-. +...+ | -.+| ..++...++|...+.
T Consensus 286 ~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~f--p-----~y~g~~~~~~~~~~~~i~~~f~ 353 (389)
T PF00503_consen 286 HESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYF--P-----DYTGDRPNDVDSAIKFIKNKFL 353 (389)
T ss_dssp HHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTS--T-----TGGSH-TSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhC--C-----CCCCCcccCHHHHHHHHHHHHH
Confidence 12333332211 57899999999998654321 21111 1 1124 478889999988884
No 457
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.68 E-value=0.0083 Score=44.80 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=18.1
Q ss_pred EEEEEecCCCchhHHHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~ 245 (472)
..+|.|++|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 458
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.64 E-value=0.0072 Score=57.25 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=23.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=-|+|+|++|+|||||+|.+-+-+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 444699999999999999999987654
No 459
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=95.64 E-value=0.075 Score=49.74 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=56.3
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCc--eEEEeccCcHHHHH
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGED--VIELHGHGGPIILH 95 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged--~~E~~~hG~~~~~~ 95 (472)
|.-++|||+|++|...++.++.......++....|+.+.+++|.+++++.++.+ +++ .+..+.+....+.+
T Consensus 5 s~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~-------~~~~~~l~~~~~~~~~~~~ 77 (211)
T PF01571_consen 5 SHRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRL-------GDDEFLLIVPASAADALLE 77 (211)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEE-------ETTEEEEEECCTCHHHHHH
T ss_pred CCcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEee-------cCceEEEEecchhHHHHHH
Confidence 456899999999999999999865555788899999999999999999999877 445 34444444445555
Q ss_pred HHHHHHHh
Q psy9409 96 MLLSSCLE 103 (472)
Q Consensus 96 ~~~~~~~~ 103 (472)
.+=..++.
T Consensus 78 ~L~~~~~~ 85 (211)
T PF01571_consen 78 WLKKYILR 85 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 44444444
No 460
>KOG0446|consensus
Probab=95.50 E-value=0.017 Score=63.38 Aligned_cols=105 Identities=11% Similarity=0.092 Sum_probs=65.4
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC-chHHHHHHHhCC-CCCCEEEEEecCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH-TDFDKKIIKNFP-MNIPVIYVWNKID 350 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~-~~~~~~il~~l~-~~~piivV~NK~D 350 (472)
.++++|.||+... .-...|.+....+ -.....++...+.+++.+.+.+.+. ...+..+.+... .+...+-|++|.|
T Consensus 133 ~lTLvDlPG~tkv-pv~dqp~di~~qI-~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~D 210 (657)
T KOG0446|consen 133 NLTLVDLPGLTKV-PVADQPDDIEEEI-KSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFD 210 (657)
T ss_pred hhhhcCCCCCccc-ccCCCCccHHHHH-HHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHH
Confidence 4789999998764 1223334433332 3345667888888888887766422 225566666665 5567899999999
Q ss_pred CCcCccccc-------ccCCCceEEEEeccCccHHH
Q psy9409 351 YSGHQKNIN-------YKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 351 l~~~~~~~~-------~~~~~~~i~vSA~~g~gi~~ 379 (472)
+.+...... .....+++.+..+.+.-++.
T Consensus 211 lmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~di~~ 246 (657)
T KOG0446|consen 211 FMDKGTNAVTRLVGRPITLKVGYVGVVNRSQSIIDF 246 (657)
T ss_pred hhhcCCcceeeecCCccccccceeeeeccchhhhhh
Confidence 987654211 11234577777666655433
No 461
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.0096 Score=55.87 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..+ .++|+|++|+|||||++.|.|..
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 457 89999999999999999999864
No 462
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.41 E-value=0.0086 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=18.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
||+|.|.+++|||||++.|....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHcC
Confidence 69999999999999999998663
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.38 E-value=0.012 Score=54.24 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=23.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.+.+-.++++|++|+|||||+++|++.-
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456689999999999999999998753
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.36 E-value=0.012 Score=53.89 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.5
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...|-.++++|++|+|||||++.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34567899999999999999999874
No 465
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.012 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+|+|+|++|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998654
No 466
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.013 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
++|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 467
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.22 E-value=0.013 Score=53.62 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..+-.++|+|++|+|||||++.|.+...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4566799999999999999999998643
No 468
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.21 E-value=0.048 Score=55.48 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.....+++++|+.++|||||...|++
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 34557899999999999999887765
No 469
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.18 E-value=0.014 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.9
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
|+++|+||+|||||...|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 470
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.081 Score=58.36 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.1
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
++|.|++|+||||+...|...
T Consensus 41 yLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999877654
No 471
>KOG4181|consensus
Probab=95.17 E-value=0.035 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.|+++|.-|+|||||++.|.++.
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 57899999999999999999874
No 472
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.14 E-value=0.11 Score=53.65 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=56.5
Q ss_pred hhcCCCChhHHHHHHHHHhcCcHH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHH
Q psy9409 123 FLNNKLDLIQVEAIIDLINASTES-AAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNEL 201 (472)
Q Consensus 123 f~ngk~dl~qae~~~~li~a~~~~-~~~~a~~~l~g~l~~~~~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l 201 (472)
+-+.-.+.+.++.+.+.|-..--. ....... .+.+.+.+|.. .-+++--.+.|.++.++ ......+.+-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~w~~----~~~~~~~~~~~~~~~L~-~~~~~~~~~~y 186 (460)
T PLN03046 116 PTSSPALVSSVQDLYEFICSGPLVDKIGYTPE----KIAQSIDKWLL----YGSQLCRLFQLNELKLT-EPQKARIYHYY 186 (460)
T ss_pred CCCCccccccHHHHHHHHhcCccchhccCCHH----HHHHHHHHHHH----HHHHHHHHhccccccCC-HHHHHHHHHHH
Confidence 345567778888888888764421 1111111 22334444544 22333444556555554 22222222211
Q ss_pred HHHHH----HHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 202 IKIKK----KLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 202 ~~l~~----~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
--+.. +|....+.... .....++-|+|.|++|+|||||++.|.+
T Consensus 187 lPl~~w~~~~i~~h~~~~~~-~~~~~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 187 IPVFIWCEDQIAEHRSKFKD-GDDIPPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 11111 22222111100 0122457899999999999999999854
No 473
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.11 E-value=0.077 Score=57.47 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.|.|++|+|||.|++++...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998864
No 474
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.10 E-value=0.016 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
|++.|++|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 475
>KOG2743|consensus
Probab=95.09 E-value=0.046 Score=53.32 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC-------CchHHHHHHHhCCCCCCEEE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK-------HTDFDKKIIKNFPMNIPVIY 344 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~-------~~~~~~~il~~l~~~~piiv 344 (472)
...+++.|-|+.+. ...............--..|+++-|+|+.... ..-.|.+...++. ..--+
T Consensus 146 fD~IllETTGlAnP-------aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA--~AD~I 216 (391)
T KOG2743|consen 146 FDHILLETTGLANP-------APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA--LADRI 216 (391)
T ss_pred cceEEEeccCCCCc-------HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh--hhhee
Confidence 35789999999875 22222111112222223479999999986531 1113444333332 12257
Q ss_pred EEecCCCCcCcc
Q psy9409 345 VWNKIDYSGHQK 356 (472)
Q Consensus 345 V~NK~Dl~~~~~ 356 (472)
++||.|+.....
T Consensus 217 I~NKtDli~~e~ 228 (391)
T KOG2743|consen 217 IMNKTDLVSEEE 228 (391)
T ss_pred eeccccccCHHH
Confidence 899999988753
No 476
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.09 E-value=0.22 Score=48.05 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.3
Q ss_pred EEEEecCCCchhHHHHhhhC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~ 246 (472)
|+++|.||+||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 477
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.08 E-value=0.016 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=23.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|-.++|+|++|+|||||++.|.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999864
No 478
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.05 E-value=0.016 Score=54.30 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.05 E-value=0.035 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
...-|+|.|++|+|||||++.|.+.-
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 480
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.017 Score=55.24 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999864
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.02 E-value=0.017 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
-.|+|+|++|+|||||++.|.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997753
No 482
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.01 E-value=0.019 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
-.++++|+||+||||++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987654
No 483
>PRK08118 topology modulation protein; Reviewed
Probab=95.01 E-value=0.016 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+|.|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.01 E-value=0.017 Score=54.39 Aligned_cols=27 Identities=41% Similarity=0.604 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 355679999999999999999999864
No 485
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.97 E-value=0.015 Score=58.40 Aligned_cols=26 Identities=38% Similarity=0.670 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
+|=-++++||+|||||||++.+.|-+
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44458999999999999999999854
No 486
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.96 E-value=0.018 Score=53.76 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999999864
No 487
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.95 E-value=0.02 Score=50.54 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|-.++|+|++|+|||||++.|.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455578999999999999999999875
No 488
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.94 E-value=0.025 Score=51.34 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=17.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.+.|.|++|+|||+|++++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999988754
No 489
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.93 E-value=0.13 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=16.5
Q ss_pred CEEEEEecCCCchhHHHHhhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~ 245 (472)
++|++.|+.||||||+.-.|.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHH
Confidence 468888999999999665543
No 490
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.92 E-value=0.02 Score=51.63 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=24.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
...|-.++|+|++|+|||||++.|.|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566899999999999999999998753
No 491
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.92 E-value=0.019 Score=52.89 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 492
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.019 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999999864
No 493
>KOG0054|consensus
Probab=94.91 E-value=0.035 Score=64.99 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
+.|-.++|+|+.|+|||||+.+++|+=.
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm~ 572 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEMP 572 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcc
Confidence 3456799999999999999999999643
No 494
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.90 E-value=0.019 Score=53.88 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999864
No 495
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=94.89 E-value=0.06 Score=55.16 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=62.8
Q ss_pred CceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcHHHHHH
Q psy9409 17 RGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHM 96 (472)
Q Consensus 17 ~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~~~~~~ 96 (472)
.|-.+.|+|+||+|...+++++.......++.++.|+.+.+.+|.++|+.++.. .||| +|...++-+...+
T Consensus 53 vShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r-------l~~d--~f~lv~~a~~~~~ 123 (379)
T COG0404 53 VSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR-------LGED--RFFLVTNAATAEK 123 (379)
T ss_pred ccCceEEEEECCCHHHHHHHHcccccCcCCCCcEEEeeeECCCCCEEeeEEEEE-------ecCC--eEEEEeCccchHH
Confidence 466789999999999999999976544567999999999999999999999886 4677 7777777666666
Q ss_pred HHHHHHh
Q psy9409 97 LLSSCLE 103 (472)
Q Consensus 97 ~~~~~~~ 103 (472)
.++-+..
T Consensus 124 ~~~~l~~ 130 (379)
T COG0404 124 DLAWLER 130 (379)
T ss_pred HHHHHHH
Confidence 6655554
No 496
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.89 E-value=0.015 Score=54.58 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+|+|++|+|||||+++|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 497
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.88 E-value=0.017 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|=-++|+||.|||||||+++|.+-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3445899999999999999999884
No 498
>KOG2423|consensus
Probab=94.88 E-value=0.077 Score=53.60 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=55.2
Q ss_pred hhcccccccEEEEEEeCCCCC--CchHHHHHHHhCCCCCCEEEEEecCCCCcCccc------ccccCCCceEEEEeccCc
Q psy9409 304 TWVELKNSDIIIYVQDARYDK--HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN------INYKNNIANIYLSASKRI 375 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~--~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~------~~~~~~~~~i~vSA~~g~ 375 (472)
.+..+..+|++|-|+|+.+|- ......+.++.-.+.+.+|+|+||+||.+.... +.+....-.|-.|..+..
T Consensus 207 LyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 207 LYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSF 286 (572)
T ss_pred HHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCcc
Confidence 455778899999999999983 233566666665678889999999999987541 111111113344544555
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|=-.|++.|.+..
T Consensus 287 GKgalI~llRQf~ 299 (572)
T KOG2423|consen 287 GKGALIQLLRQFA 299 (572)
T ss_pred chhHHHHHHHHHH
Confidence 5556666555543
No 499
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.85 E-value=0.06 Score=54.20 Aligned_cols=74 Identities=28% Similarity=0.325 Sum_probs=52.7
Q ss_pred hhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRI 375 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~ 375 (472)
....+..+|+++.|+|+.+|.... ....+. ..+|.++|+||+|+.+... .+....+...+.+|++.+.
T Consensus 28 ~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~ 103 (322)
T COG1161 28 LKEVLKSVDVVVEVVDARDPLGTRNPELERIV----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQ 103 (322)
T ss_pred HHHhcccCCEEEEEEeccccccccCccHHHHH----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeeccc
Confidence 445778899999999999984432 333333 4566699999999998654 1222335567888888887
Q ss_pred cHHHHH
Q psy9409 376 GINLLR 381 (472)
Q Consensus 376 gi~~L~ 381 (472)
+...+.
T Consensus 104 ~~~~i~ 109 (322)
T COG1161 104 GGKKIR 109 (322)
T ss_pred CccchH
Confidence 777666
No 500
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.03 Score=52.79 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=-|+++|+.|+|||||++++.|--.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999999998654
Done!