Query psy9409
Match_columns 472
No_of_seqs 501 out of 3347
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:27:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gee_A MNME, tRNA modification 100.0 2E-108 6E-113 861.9 45.2 448 5-472 15-476 (476)
2 3geh_A MNME, tRNA modification 100.0 3E-107 1E-111 849.5 42.9 450 1-472 4-462 (462)
3 1xzp_A Probable tRNA modificat 100.0 2.9E-97 1E-101 777.6 39.4 444 5-472 33-482 (482)
4 2gj8_A MNME, tRNA modification 99.9 2.5E-26 8.5E-31 208.2 14.4 162 223-391 3-167 (172)
5 2qtf_A Protein HFLX, GTP-bindi 99.9 2.4E-25 8.2E-30 225.5 19.1 234 142-391 98-355 (364)
6 2www_A Methylmalonic aciduria 99.9 2.3E-24 7.8E-29 217.5 10.9 214 223-467 73-348 (349)
7 3iev_A GTP-binding protein ERA 99.9 7.5E-23 2.6E-27 203.0 18.1 161 225-390 11-182 (308)
8 4dkx_A RAS-related protein RAB 99.9 2.7E-23 9.1E-28 195.7 11.7 150 224-389 13-175 (216)
9 1wf3_A GTP-binding protein; GT 99.9 2.1E-22 7.1E-27 199.0 17.2 158 225-389 8-172 (301)
10 2j69_A Bacterial dynamin-like 99.9 2.4E-22 8.3E-27 219.6 18.2 208 161-389 15-324 (695)
11 3tw8_B RAS-related protein RAB 99.9 1.2E-22 4E-27 183.5 12.6 151 223-389 8-170 (181)
12 3cph_A RAS-related protein SEC 99.9 8.1E-23 2.8E-27 190.3 11.9 165 209-389 5-181 (213)
13 3k53_A Ferrous iron transport 99.9 1.3E-22 4.5E-27 197.5 13.6 156 224-390 3-166 (271)
14 3q72_A GTP-binding protein RAD 99.9 1.3E-22 4.5E-27 181.0 12.3 148 224-389 2-163 (166)
15 2dyk_A GTP-binding protein; GT 99.9 2.5E-22 8.4E-27 178.1 13.7 153 225-388 2-160 (161)
16 3a1s_A Iron(II) transport prot 99.9 2.5E-22 8.5E-27 194.2 14.4 156 224-389 5-166 (258)
17 1upt_A ARL1, ADP-ribosylation 99.9 5.7E-22 1.9E-26 177.5 15.3 151 220-389 3-168 (171)
18 2wji_A Ferrous iron transport 99.9 8.2E-23 2.8E-27 183.4 9.7 154 225-388 4-163 (165)
19 3tkl_A RAS-related protein RAB 99.9 3.5E-22 1.2E-26 183.3 13.9 152 223-390 15-179 (196)
20 2g6b_A RAS-related protein RAB 99.9 3.7E-22 1.3E-26 180.5 13.7 152 223-389 9-173 (180)
21 2lkc_A Translation initiation 99.9 3.2E-22 1.1E-26 180.6 12.9 152 222-390 6-171 (178)
22 3iby_A Ferrous iron transport 99.9 1.2E-22 4.1E-27 196.2 9.9 157 225-387 2-164 (256)
23 3i8s_A Ferrous iron transport 99.9 1.4E-22 4.9E-27 197.7 10.3 161 224-390 3-169 (274)
24 2fu5_C RAS-related protein RAB 99.9 1.8E-22 6.1E-27 183.4 10.3 150 224-389 8-170 (183)
25 2bme_A RAB4A, RAS-related prot 99.9 6.8E-22 2.3E-26 179.9 14.0 150 224-389 10-172 (186)
26 2nzj_A GTP-binding protein REM 99.9 1.5E-22 5.1E-27 182.1 9.5 151 224-389 4-168 (175)
27 1kao_A RAP2A; GTP-binding prot 99.9 4.7E-22 1.6E-26 176.8 11.6 149 224-389 3-165 (167)
28 1g16_A RAS-related protein SEC 99.9 3.8E-22 1.3E-26 178.3 11.1 151 224-390 3-165 (170)
29 2hjg_A GTP-binding protein ENG 99.9 1.6E-22 5.3E-27 210.2 9.6 163 223-390 174-349 (436)
30 2hxs_A RAB-26, RAS-related pro 99.9 1.6E-22 5.6E-27 182.5 8.3 152 223-390 5-173 (178)
31 1r8s_A ADP-ribosylation factor 99.9 6.5E-22 2.2E-26 176.1 12.0 146 225-389 1-161 (164)
32 3t5g_A GTP-binding protein RHE 99.9 7.7E-22 2.6E-26 178.9 12.6 150 224-390 6-169 (181)
33 2ew1_A RAS-related protein RAB 99.9 9.9E-22 3.4E-26 182.7 13.6 151 223-389 25-188 (201)
34 1fzq_A ADP-ribosylation factor 99.9 1.7E-21 5.8E-26 177.5 14.9 148 223-389 15-177 (181)
35 2h17_A ADP-ribosylation factor 99.9 1.5E-21 5.1E-26 177.6 14.2 147 222-387 19-180 (181)
36 3q85_A GTP-binding protein REM 99.9 9.7E-22 3.3E-26 175.9 12.5 150 225-389 3-166 (169)
37 2qu8_A Putative nucleolar GTP- 99.9 1.3E-21 4.4E-26 185.1 14.0 160 223-389 28-204 (228)
38 2y8e_A RAB-protein 6, GH09086P 99.9 6.7E-22 2.3E-26 178.2 11.5 150 224-389 14-176 (179)
39 2fg5_A RAB-22B, RAS-related pr 99.9 6.8E-22 2.3E-26 181.7 11.7 154 222-390 21-186 (192)
40 1zj6_A ADP-ribosylation factor 99.9 2.4E-21 8.2E-26 177.0 15.3 151 222-391 14-179 (187)
41 4bas_A ADP-ribosylation factor 99.9 1.9E-21 6.4E-26 178.9 14.6 151 223-390 16-189 (199)
42 1z08_A RAS-related protein RAB 99.9 7.7E-22 2.6E-26 176.5 11.7 151 223-389 5-168 (170)
43 1z0j_A RAB-22, RAS-related pro 99.9 6.9E-22 2.4E-26 176.6 11.3 149 224-389 6-168 (170)
44 1moz_A ARL1, ADP-ribosylation 99.9 2.5E-21 8.4E-26 175.7 15.0 149 222-389 16-179 (183)
45 2hup_A RAS-related protein RAB 99.9 1.2E-21 4.1E-26 181.7 13.1 152 223-390 28-193 (201)
46 2efe_B Small GTP-binding prote 99.9 1.4E-21 4.7E-26 176.9 13.1 152 223-390 11-175 (181)
47 1ek0_A Protein (GTP-binding pr 99.9 8.6E-22 2.9E-26 175.8 11.5 149 224-388 3-167 (170)
48 1zbd_A Rabphilin-3A; G protein 99.9 2.1E-21 7.2E-26 179.6 14.5 150 224-389 8-170 (203)
49 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.9E-21 6.4E-26 175.3 13.6 150 224-389 7-173 (177)
50 4dsu_A GTPase KRAS, isoform 2B 99.9 9.4E-22 3.2E-26 179.0 11.8 149 224-389 4-165 (189)
51 2bcg_Y Protein YP2, GTP-bindin 99.9 1.7E-21 6E-26 180.7 13.7 150 224-389 8-170 (206)
52 1r2q_A RAS-related protein RAB 99.9 6.8E-22 2.3E-26 176.5 10.5 149 224-388 6-167 (170)
53 3b1v_A Ferrous iron uptake tra 99.9 4.6E-22 1.6E-26 193.7 10.0 155 224-389 3-163 (272)
54 1u8z_A RAS-related protein RAL 99.9 1E-21 3.4E-26 174.8 11.3 149 224-389 4-166 (168)
55 2fn4_A P23, RAS-related protei 99.9 1.1E-21 3.8E-26 177.1 11.4 151 223-390 8-172 (181)
56 1ksh_A ARF-like protein 2; sma 99.9 2.9E-21 9.9E-26 176.0 14.1 149 222-389 16-179 (186)
57 1z0f_A RAB14, member RAS oncog 99.9 1.9E-21 6.5E-26 175.3 12.6 150 223-388 14-176 (179)
58 2il1_A RAB12; G-protein, GDP, 99.9 1.8E-21 6E-26 179.0 12.6 151 223-389 25-189 (192)
59 1c1y_A RAS-related protein RAP 99.9 1.1E-21 3.8E-26 174.7 10.9 148 224-388 3-165 (167)
60 3clv_A RAB5 protein, putative; 99.9 1.4E-21 4.9E-26 179.5 11.9 151 223-389 6-203 (208)
61 3reg_A RHO-like small GTPase; 99.9 1.5E-21 5E-26 179.5 11.9 152 222-390 21-188 (194)
62 1ega_A Protein (GTP-binding pr 99.9 6.9E-21 2.4E-25 188.2 17.5 156 225-389 9-174 (301)
63 2o52_A RAS-related protein RAB 99.9 1E-21 3.5E-26 181.9 10.9 152 222-389 23-187 (200)
64 2a5j_A RAS-related protein RAB 99.9 1.3E-21 4.3E-26 179.6 11.3 151 223-389 20-183 (191)
65 1m2o_B GTP-binding protein SAR 99.9 2.8E-21 9.6E-26 177.6 13.5 146 223-387 22-189 (190)
66 2b6h_A ADP-ribosylation factor 99.9 2.4E-21 8.1E-26 178.4 13.1 149 222-389 27-190 (192)
67 2f7s_A C25KG, RAS-related prot 99.9 1.4E-21 4.9E-26 182.8 11.7 151 223-389 24-198 (217)
68 2g3y_A GTP-binding protein GEM 99.9 1.5E-21 5.2E-26 183.1 11.8 153 223-389 36-202 (211)
69 2x77_A ADP-ribosylation factor 99.9 4E-21 1.4E-25 175.7 14.3 150 222-390 20-184 (189)
70 4dcu_A GTP-binding protein ENG 99.9 6E-22 2E-26 206.9 9.8 164 222-390 193-369 (456)
71 1ky3_A GTP-binding protein YPT 99.9 1.5E-21 5E-26 176.5 11.0 151 223-389 7-177 (182)
72 3cbq_A GTP-binding protein REM 99.9 3E-21 1E-25 178.3 13.2 153 223-390 22-188 (195)
73 3bc1_A RAS-related protein RAB 99.9 1.8E-21 6.3E-26 177.6 11.6 150 224-389 11-184 (195)
74 2h57_A ADP-ribosylation factor 99.9 4.9E-21 1.7E-25 175.4 14.5 151 222-389 19-186 (190)
75 1z2a_A RAS-related protein RAB 99.9 6.1E-22 2.1E-26 176.6 8.2 150 223-389 4-166 (168)
76 2gf9_A RAS-related protein RAB 99.9 3.4E-21 1.2E-25 176.3 13.4 150 224-389 22-184 (189)
77 4dhe_A Probable GTP-binding pr 99.9 2.3E-21 7.8E-26 182.0 12.4 165 223-390 28-211 (223)
78 2bov_A RAla, RAS-related prote 99.9 2.3E-21 8E-26 179.2 12.2 150 223-389 13-176 (206)
79 2a9k_A RAS-related protein RAL 99.9 2.5E-21 8.7E-26 175.7 12.2 150 223-389 17-180 (187)
80 1zd9_A ADP-ribosylation factor 99.9 2.2E-21 7.6E-26 177.6 11.8 151 221-389 19-184 (188)
81 3oes_A GTPase rhebl1; small GT 99.9 1.2E-21 4E-26 181.4 9.9 152 222-390 22-187 (201)
82 1f6b_A SAR1; gtpases, N-termin 99.9 2.6E-21 8.8E-26 179.1 12.0 147 223-388 24-197 (198)
83 1z06_A RAS-related protein RAB 99.9 2.2E-21 7.4E-26 177.6 11.3 151 223-388 19-186 (189)
84 1vg8_A RAS-related protein RAB 99.8 2.3E-21 7.7E-26 179.7 11.1 151 223-389 7-174 (207)
85 3cpj_B GTP-binding protein YPT 99.8 2.6E-21 8.9E-26 182.3 11.6 152 223-390 12-176 (223)
86 3l0i_B RAS-related protein RAB 99.8 2.2E-22 7.5E-27 186.1 4.1 150 224-389 33-195 (199)
87 3kkq_A RAS-related protein M-R 99.8 3.3E-21 1.1E-25 175.0 11.8 150 223-389 17-181 (183)
88 2oil_A CATX-8, RAS-related pro 99.8 2.2E-21 7.6E-26 178.0 10.6 151 223-389 24-187 (193)
89 1mky_A Probable GTP-binding pr 99.8 2.3E-21 7.9E-26 201.5 11.9 157 225-389 2-165 (439)
90 2wjg_A FEOB, ferrous iron tran 99.8 1.8E-21 6.2E-26 177.5 9.6 157 224-390 7-169 (188)
91 2q3h_A RAS homolog gene family 99.8 4.8E-21 1.6E-25 176.9 12.1 152 221-389 17-194 (201)
92 1x3s_A RAS-related protein RAB 99.8 4.5E-21 1.5E-25 175.6 11.8 151 223-389 14-177 (195)
93 2erx_A GTP-binding protein DI- 99.8 2.3E-21 7.9E-26 173.3 9.6 149 224-389 3-166 (172)
94 2atx_A Small GTP binding prote 99.8 5.6E-21 1.9E-25 175.4 12.4 149 224-389 18-192 (194)
95 3q3j_B RHO-related GTP-binding 99.8 4.7E-21 1.6E-25 179.7 12.0 152 222-390 25-203 (214)
96 4gzl_A RAS-related C3 botulinu 99.8 2.8E-21 9.6E-26 179.6 10.4 150 222-388 28-203 (204)
97 2hjg_A GTP-binding protein ENG 99.8 1.8E-21 6.3E-26 202.1 10.2 157 225-389 4-164 (436)
98 3dz8_A RAS-related protein RAB 99.8 1E-21 3.6E-26 180.2 7.2 153 222-389 21-185 (191)
99 2j1l_A RHO-related GTP-binding 99.8 5.4E-21 1.8E-25 179.1 11.9 150 223-389 33-208 (214)
100 2p5s_A RAS and EF-hand domain 99.8 4.4E-21 1.5E-25 177.3 11.1 152 222-389 26-196 (199)
101 1mh1_A RAC1; GTP-binding, GTPa 99.8 5.9E-21 2E-25 173.3 11.4 150 224-390 5-180 (186)
102 2ce2_X GTPase HRAS; signaling 99.8 1.2E-20 4E-25 167.3 13.0 148 225-389 4-164 (166)
103 2cjw_A GTP-binding protein GEM 99.8 4.4E-21 1.5E-25 176.8 10.4 152 224-389 6-171 (192)
104 3gj0_A GTP-binding nuclear pro 99.8 2E-21 6.8E-26 182.6 8.2 151 223-389 14-174 (221)
105 3con_A GTPase NRAS; structural 99.8 7.4E-21 2.5E-25 173.9 11.7 149 224-389 21-182 (190)
106 2fv8_A H6, RHO-related GTP-bin 99.8 1.3E-20 4.3E-25 175.4 12.5 150 224-390 25-200 (207)
107 2yc2_C IFT27, small RAB-relate 99.8 2.6E-21 8.9E-26 179.0 7.7 152 223-389 19-191 (208)
108 1svi_A GTP-binding protein YSX 99.8 3.1E-20 1.1E-24 170.3 14.9 158 223-389 22-194 (195)
109 3qq5_A Small GTP-binding prote 99.8 2.4E-21 8.2E-26 199.4 8.2 157 223-389 33-195 (423)
110 4djt_A GTP-binding nuclear pro 99.8 8.5E-21 2.9E-25 177.6 11.1 151 223-389 10-174 (218)
111 3c5c_A RAS-like protein 12; GD 99.8 5.9E-21 2E-25 174.9 9.7 149 223-389 20-185 (187)
112 2iwr_A Centaurin gamma 1; ANK 99.8 9.1E-21 3.1E-25 171.3 10.3 143 224-389 7-168 (178)
113 3pqc_A Probable GTP-binding pr 99.8 5.5E-20 1.9E-24 168.1 15.6 160 223-389 22-193 (195)
114 3ihw_A Centg3; RAS, centaurin, 99.8 1.6E-20 5.5E-25 171.7 11.7 144 223-389 19-179 (184)
115 3bwd_D RAC-like GTP-binding pr 99.8 2E-21 6.8E-26 176.0 5.6 150 223-389 7-180 (182)
116 1mky_A Probable GTP-binding pr 99.8 1.6E-20 5.3E-25 195.3 12.9 164 223-390 179-355 (439)
117 2gco_A H9, RHO-related GTP-bin 99.8 2E-20 6.8E-25 173.3 11.9 148 224-388 25-198 (201)
118 3t1o_A Gliding protein MGLA; G 99.8 6.4E-21 2.2E-25 174.6 8.1 152 223-389 13-191 (198)
119 2gf0_A GTP-binding protein DI- 99.8 1.1E-20 3.9E-25 173.7 9.7 151 222-389 6-170 (199)
120 2atv_A RERG, RAS-like estrogen 99.8 2.2E-20 7.5E-25 172.0 11.4 149 223-389 27-190 (196)
121 2j0v_A RAC-like GTP-binding pr 99.8 1.3E-20 4.4E-25 175.6 9.4 151 223-390 8-180 (212)
122 2e87_A Hypothetical protein PH 99.8 1.3E-19 4.5E-24 183.3 17.5 160 222-389 165-335 (357)
123 1m7b_A RND3/RHOE small GTP-bin 99.8 2E-20 6.8E-25 170.5 10.1 149 223-388 6-181 (184)
124 3o47_A ADP-ribosylation factor 99.8 4.8E-20 1.6E-24 184.4 13.5 149 222-389 163-326 (329)
125 3llu_A RAS-related GTP-binding 99.8 2.7E-20 9.4E-25 171.6 10.6 154 222-388 18-195 (196)
126 3lvq_E ARF-GAP with SH3 domain 99.8 5.4E-20 1.9E-24 194.1 12.9 149 223-390 321-484 (497)
127 2wkq_A NPH1-1, RAS-related C3 99.8 1.6E-19 5.6E-24 179.5 15.2 153 220-389 151-329 (332)
128 2fh5_B SR-beta, signal recogni 99.8 8.5E-20 2.9E-24 170.3 11.8 147 223-387 6-213 (214)
129 1gwn_A RHO-related GTP-binding 99.8 5.2E-20 1.8E-24 171.5 10.2 149 223-388 27-202 (205)
130 3th5_A RAS-related C3 botulinu 99.7 2E-21 6.7E-26 180.2 0.0 150 222-388 28-203 (204)
131 4dcu_A GTP-binding protein ENG 99.8 3E-20 1E-24 194.0 8.9 158 224-389 23-184 (456)
132 3r7w_A Gtpase1, GTP-binding pr 99.8 9.7E-20 3.3E-24 180.5 10.4 154 224-388 3-179 (307)
133 2zej_A Dardarin, leucine-rich 99.8 1E-19 3.4E-24 166.1 8.1 151 224-390 2-178 (184)
134 2xtp_A GTPase IMAP family memb 99.8 3.1E-19 1.1E-23 172.2 10.8 164 223-390 21-208 (260)
135 1lnz_A SPO0B-associated GTP-bi 99.8 2.8E-20 9.6E-25 186.6 2.8 157 225-390 159-330 (342)
136 2aka_B Dynamin-1; fusion prote 99.8 2.3E-18 7.8E-23 169.2 14.6 165 223-389 25-252 (299)
137 2f9l_A RAB11B, member RAS onco 99.8 2E-18 6.9E-23 159.4 11.6 150 224-389 5-167 (199)
138 2cxx_A Probable GTP-binding pr 99.8 1.1E-18 3.8E-23 158.9 9.5 160 225-390 2-184 (190)
139 3t5d_A Septin-7; GTP-binding p 99.8 1.3E-18 4.4E-23 169.5 10.5 166 225-390 9-204 (274)
140 3lxx_A GTPase IMAP family memb 99.8 3.5E-18 1.2E-22 162.8 12.9 163 223-390 28-214 (239)
141 3lxw_A GTPase IMAP family memb 99.8 2.2E-18 7.7E-23 165.3 11.4 162 222-390 19-208 (247)
142 3j2k_7 ERF3, eukaryotic polype 99.8 4E-18 1.4E-22 176.9 13.6 146 222-382 15-217 (439)
143 3dpu_A RAB family protein; roc 99.7 9.6E-19 3.3E-23 186.2 8.5 154 222-391 39-209 (535)
144 3p32_A Probable GTPase RV1496/ 99.7 1.8E-18 6.2E-23 174.8 7.8 176 223-423 78-314 (355)
145 4a9a_A Ribosome-interacting GT 99.7 7.3E-18 2.5E-22 170.4 11.9 149 194-351 35-194 (376)
146 1oix_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 153.4 12.2 149 224-388 29-190 (191)
147 3izy_P Translation initiation 99.7 3.4E-19 1.2E-23 188.0 1.8 150 223-389 3-167 (537)
148 2x2e_A Dynamin-1; nitration, h 99.7 5.3E-17 1.8E-21 163.9 17.7 164 223-388 30-256 (353)
149 3tr5_A RF-3, peptide chain rel 99.7 5.8E-18 2E-22 179.1 10.4 116 224-355 13-150 (528)
150 3sjy_A Translation initiation 99.7 8.1E-18 2.8E-22 172.9 9.9 153 222-390 6-192 (403)
151 2p67_A LAO/AO transport system 99.7 5.9E-18 2E-22 170.1 8.4 176 222-422 54-290 (341)
152 1wb1_A Translation elongation 99.7 7.9E-18 2.7E-22 176.6 9.3 149 224-389 19-188 (482)
153 1zo1_I IF2, translation initia 99.7 2.1E-18 7.3E-23 180.5 3.4 148 223-387 3-164 (501)
154 1jwy_B Dynamin A GTPase domain 99.7 1.3E-16 4.4E-21 158.0 15.5 167 222-390 22-262 (315)
155 3c5h_A Glucocorticoid receptor 99.7 9E-18 3.1E-22 161.8 5.8 79 310-388 162-253 (255)
156 3cb4_D GTP-binding protein LEP 99.7 5E-17 1.7E-21 173.9 11.8 151 225-390 5-182 (599)
157 1s0u_A EIF-2-gamma, translatio 99.7 1.6E-16 5.6E-21 163.4 14.6 152 223-390 7-198 (408)
158 2c78_A Elongation factor TU-A; 99.7 3.3E-17 1.1E-21 168.4 8.9 152 222-389 9-211 (405)
159 3p26_A Elongation factor 1 alp 99.7 1.9E-17 6.5E-22 174.0 6.5 143 222-380 31-228 (483)
160 3izq_1 HBS1P, elongation facto 99.7 3.2E-17 1.1E-21 176.4 8.4 144 222-380 165-362 (611)
161 1d2e_A Elongation factor TU (E 99.7 7.1E-17 2.4E-21 165.5 10.5 152 223-390 2-195 (397)
162 2ywe_A GTP-binding protein LEP 99.7 6.8E-17 2.3E-21 172.6 10.7 151 225-390 7-184 (600)
163 1kk1_A EIF2gamma; initiation o 99.7 1.5E-16 5.1E-21 163.8 12.6 152 223-390 9-200 (410)
164 3r7w_B Gtpase2, GTP-binding pr 99.7 3.8E-17 1.3E-21 161.5 7.2 147 226-388 1-172 (331)
165 3mca_A HBS1, elongation factor 99.7 4.8E-18 1.6E-22 182.3 0.3 150 223-389 176-396 (592)
166 1zun_B Sulfate adenylate trans 99.7 9.2E-17 3.2E-21 166.6 9.9 143 223-381 23-215 (434)
167 1h65_A Chloroplast outer envel 99.7 3.9E-16 1.3E-20 151.5 13.7 127 223-355 38-170 (270)
168 2elf_A Protein translation elo 99.7 1.6E-16 5.5E-21 161.1 11.4 137 226-389 23-179 (370)
169 1nrj_B SR-beta, signal recogni 99.7 3.6E-17 1.2E-21 152.9 5.6 137 222-376 10-170 (218)
170 1wxq_A GTP-binding protein; st 99.7 9.6E-17 3.3E-21 164.1 9.1 90 225-323 1-114 (397)
171 3def_A T7I23.11 protein; chlor 99.6 6.6E-16 2.3E-20 149.3 11.8 126 223-354 35-166 (262)
172 2ged_A SR-beta, signal recogni 99.6 1.4E-16 4.9E-21 145.6 5.8 139 198-355 23-172 (193)
173 3zvr_A Dynamin-1; hydrolase, D 99.6 2.7E-15 9.1E-20 163.4 16.4 164 222-387 49-275 (772)
174 2qm8_A GTPase/ATPase; G protei 99.6 1.8E-16 6.2E-21 158.8 6.5 178 221-423 52-291 (337)
175 3t34_A Dynamin-related protein 99.6 6.9E-15 2.4E-19 148.7 17.0 160 224-386 34-257 (360)
176 1pui_A ENGB, probable GTP-bind 99.6 2.2E-15 7.5E-20 139.7 12.3 163 221-390 23-199 (210)
177 1f60_A Elongation factor EEF1A 99.6 7.9E-17 2.7E-21 168.1 2.5 143 223-380 6-202 (458)
178 1jny_A EF-1-alpha, elongation 99.6 3.1E-16 1.1E-20 162.6 5.8 143 223-381 5-204 (435)
179 1g7s_A Translation initiation 99.6 1.1E-15 3.7E-20 163.6 10.1 147 223-389 4-217 (594)
180 2h5e_A Peptide chain release f 99.6 3.5E-15 1.2E-19 157.9 13.1 116 223-354 12-149 (529)
181 2qag_A Septin-2, protein NEDD5 99.6 2E-15 6.7E-20 152.8 9.7 164 224-388 37-231 (361)
182 1r5b_A Eukaryotic peptide chai 99.6 8.2E-16 2.8E-20 160.7 6.8 144 223-381 42-243 (467)
183 1udx_A The GTP-binding protein 99.6 2.4E-15 8.3E-20 154.2 10.0 159 222-390 155-325 (416)
184 3avx_A Elongation factor TS, e 99.6 1.4E-15 4.8E-20 170.1 8.7 150 223-389 295-485 (1289)
185 1dar_A EF-G, elongation factor 99.6 5E-15 1.7E-19 161.7 11.4 114 224-355 12-145 (691)
186 1jal_A YCHF protein; nucleotid 99.6 1.1E-14 3.9E-19 146.2 12.3 90 224-322 2-108 (363)
187 2xex_A Elongation factor G; GT 99.5 6.4E-15 2.2E-19 160.9 9.2 114 224-355 10-143 (693)
188 2rdo_7 EF-G, elongation factor 99.5 4.8E-14 1.6E-18 154.2 14.7 116 223-354 9-149 (704)
189 2dy1_A Elongation factor G; tr 99.5 2.1E-14 7.2E-19 156.2 10.2 115 222-352 7-139 (665)
190 2wsm_A Hydrogenase expression/ 99.5 1.3E-14 4.5E-19 135.7 5.4 145 223-389 29-213 (221)
191 3vqt_A RF-3, peptide chain rel 99.5 6.4E-14 2.2E-18 148.9 11.3 114 226-355 33-168 (548)
192 2qpt_A EH domain-containing pr 99.5 2E-13 6.8E-18 145.2 14.0 127 223-355 64-234 (550)
193 2dby_A GTP-binding protein; GD 99.5 7.2E-14 2.5E-18 141.1 8.3 89 225-322 2-111 (368)
194 2qnr_A Septin-2, protein NEDD5 99.4 1E-13 3.6E-18 136.6 8.5 165 224-389 18-213 (301)
195 2qag_C Septin-7; cell cycle, c 99.4 4.1E-13 1.4E-17 137.7 8.8 165 225-390 32-227 (418)
196 1yrb_A ATP(GTP)binding protein 99.3 2.2E-13 7.4E-18 130.9 2.9 157 224-390 14-257 (262)
197 3j25_A Tetracycline resistance 99.3 1.7E-13 5.8E-18 148.4 2.0 149 226-390 4-239 (638)
198 2hf9_A Probable hydrogenase ni 99.3 3.5E-12 1.2E-16 119.5 9.0 51 339-389 164-223 (226)
199 1n0u_A EF-2, elongation factor 99.3 1.9E-12 6.6E-17 144.2 5.3 114 225-353 20-164 (842)
200 3ec1_A YQEH GTPase; atnos1, at 99.2 3.2E-13 1.1E-17 136.9 -2.2 146 224-378 162-319 (369)
201 4fn5_A EF-G 1, elongation fact 99.2 2.1E-11 7.1E-16 133.7 10.9 113 226-354 15-152 (709)
202 3h2y_A GTPase family protein; 99.2 8.4E-13 2.9E-17 133.7 -2.2 123 224-355 160-289 (368)
203 3ohm_A Guanine nucleotide-bind 99.2 1.5E-11 5.2E-16 121.9 6.5 113 262-389 157-317 (327)
204 2ohf_A Protein OLA1, GTP-bindi 99.2 1.1E-11 3.7E-16 125.8 4.4 94 221-323 19-129 (396)
205 4fid_A G protein alpha subunit 99.1 8.9E-11 3.1E-15 116.9 9.2 78 261-353 150-242 (340)
206 2j37_W Signal recognition part 99.1 2.7E-12 9.4E-17 134.4 -1.9 175 200-387 75-310 (504)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1E-10 3.4E-15 118.9 5.1 94 221-322 17-127 (392)
208 2qag_B Septin-6, protein NEDD5 99.0 7.3E-10 2.5E-14 113.3 8.7 135 221-356 37-193 (427)
209 1u0l_A Probable GTPase ENGC; p 99.0 1.5E-10 5E-15 114.0 3.3 131 239-388 32-171 (301)
210 1puj_A YLQF, conserved hypothe 99.0 4.9E-10 1.7E-14 109.2 6.5 61 222-285 118-178 (282)
211 1cip_A Protein (guanine nucleo 98.9 4.2E-10 1.4E-14 113.0 5.1 115 260-389 181-343 (353)
212 1zcb_A G alpha I/13; GTP-bindi 98.9 1.1E-09 3.8E-14 110.3 6.1 113 262-389 191-352 (362)
213 3dm5_A SRP54, signal recogniti 98.9 2.4E-09 8.2E-14 110.0 8.5 166 201-381 76-282 (443)
214 1azs_C GS-alpha; complex (lyas 98.8 2.8E-09 9.7E-14 108.4 6.1 112 263-389 208-384 (402)
215 3sop_A Neuronal-specific septi 98.8 5E-09 1.7E-13 101.4 6.9 130 225-355 3-156 (270)
216 2xtz_A Guanine nucleotide-bind 98.8 3.8E-09 1.3E-13 106.1 5.0 104 271-389 182-344 (354)
217 1tq4_A IIGP1, interferon-induc 98.7 6.9E-08 2.4E-12 98.6 12.5 153 222-389 67-252 (413)
218 2v3c_C SRP54, signal recogniti 98.7 3.8E-09 1.3E-13 108.8 2.0 119 224-354 99-253 (432)
219 3cnl_A YLQF, putative uncharac 98.6 1.3E-08 4.5E-13 98.0 3.2 58 225-285 100-157 (262)
220 3kl4_A SRP54, signal recogniti 98.5 3.1E-08 1.1E-12 101.7 3.7 164 202-379 73-279 (433)
221 1f5n_A Interferon-induced guan 98.5 6.4E-08 2.2E-12 103.0 4.9 61 223-285 37-104 (592)
222 3e70_C DPA, signal recognition 98.4 1.4E-07 4.8E-12 93.6 5.0 226 134-380 20-310 (328)
223 2yv5_A YJEQ protein; hydrolase 98.4 1.7E-07 5.9E-12 92.0 4.4 83 306-388 75-167 (302)
224 1j8m_F SRP54, signal recogniti 98.4 1.4E-06 4.8E-11 85.2 10.6 142 224-380 98-281 (297)
225 1puj_A YLQF, conserved hypothe 98.1 2.5E-06 8.5E-11 82.8 5.6 86 301-388 14-104 (282)
226 2xxa_A Signal recognition part 98.0 2E-05 6.9E-10 81.0 11.2 134 225-371 101-275 (433)
227 3szr_A Interferon-induced GTP- 98.0 2.6E-05 8.9E-10 83.7 11.4 81 273-355 148-230 (608)
228 3l82_B F-box only protein 4; T 97.9 1.7E-05 5.9E-10 72.8 7.5 85 305-389 120-222 (227)
229 3h2y_A GTPase family protein; 97.9 4.6E-06 1.6E-10 84.1 3.7 81 306-388 65-158 (368)
230 3ec1_A YQEH GTPase; atnos1, at 97.9 8.3E-06 2.8E-10 82.2 5.3 80 307-388 68-160 (369)
231 1rj9_A FTSY, signal recognitio 97.8 2.8E-05 9.5E-10 76.2 7.5 149 223-379 101-288 (304)
232 3q5d_A Atlastin-1; G protein, 97.8 1.1E-05 3.6E-10 83.2 3.4 59 226-285 69-153 (447)
233 2px0_A Flagellar biosynthesis 97.7 5.7E-05 2E-09 73.7 7.9 137 223-370 104-273 (296)
234 3cnl_A YLQF, putative uncharac 97.6 1E-05 3.5E-10 77.6 1.3 79 302-387 13-98 (262)
235 1zu4_A FTSY; GTPase, signal re 97.6 0.0004 1.4E-08 68.4 11.9 98 270-379 190-295 (320)
236 2yhs_A FTSY, cell division pro 97.6 0.00017 5.9E-09 74.8 9.1 147 223-380 292-480 (503)
237 3l2o_B F-box only protein 4; s 97.5 0.00011 3.7E-09 70.8 6.8 85 305-389 205-307 (312)
238 1t9h_A YLOQ, probable GTPase E 97.5 2.6E-05 8.9E-10 76.4 2.4 60 222-285 171-237 (307)
239 1vma_A Cell division protein F 97.4 7.5E-05 2.5E-09 73.2 3.7 142 224-379 104-290 (306)
240 2yv5_A YJEQ protein; hydrolase 97.2 0.00027 9.2E-09 69.1 5.3 58 224-285 165-229 (302)
241 2ffh_A Protein (FFH); SRP54, s 97.2 0.00078 2.7E-08 68.8 8.8 143 224-380 98-279 (425)
242 2rcn_A Probable GTPase ENGC; Y 97.2 0.00014 4.8E-09 72.7 2.7 60 223-285 214-281 (358)
243 1t9h_A YLOQ, probable GTPase E 97.1 0.0001 3.4E-09 72.2 1.4 79 307-385 83-172 (307)
244 3b9q_A Chloroplast SRP recepto 97.1 0.0021 7.1E-08 62.7 10.4 143 222-370 98-280 (302)
245 2og2_A Putative signal recogni 97.1 0.0021 7.1E-08 64.2 10.2 143 223-371 156-338 (359)
246 1u0l_A Probable GTPase ENGC; p 97.0 0.00036 1.2E-08 68.1 4.0 59 224-285 169-234 (301)
247 3ney_A 55 kDa erythrocyte memb 96.9 0.00014 5E-09 66.4 0.3 58 223-282 18-76 (197)
248 2rcn_A Probable GTPase ENGC; Y 96.8 0.001 3.5E-08 66.3 5.0 80 305-385 125-214 (358)
249 1kgd_A CASK, peripheral plasma 96.4 0.001 3.4E-08 59.5 1.8 25 224-248 5-29 (180)
250 1ls1_A Signal recognition part 96.4 0.0031 1.1E-07 61.3 5.4 135 224-370 98-271 (295)
251 1lvg_A Guanylate kinase, GMP k 96.2 0.0014 4.7E-08 59.7 1.9 25 223-247 3-27 (198)
252 4dzz_A Plasmid partitioning pr 96.2 0.0022 7.5E-08 58.0 3.1 63 271-352 75-143 (206)
253 1ye8_A Protein THEP1, hypothet 96.2 0.0018 6.1E-08 58.1 2.3 24 225-248 1-24 (178)
254 3c8u_A Fructokinase; YP_612366 96.1 0.0028 9.7E-08 57.9 3.1 26 222-247 20-45 (208)
255 3end_A Light-independent proto 95.9 0.018 6E-07 55.8 8.2 81 271-368 156-242 (307)
256 1zp6_A Hypothetical protein AT 95.9 0.0037 1.3E-07 55.9 2.9 26 222-247 7-32 (191)
257 1ex7_A Guanylate kinase; subst 95.9 0.0029 9.9E-08 57.2 2.1 36 227-262 4-40 (186)
258 3tr0_A Guanylate kinase, GMP k 95.8 0.0034 1.2E-07 56.8 2.5 26 222-247 5-30 (205)
259 1s96_A Guanylate kinase, GMP k 95.8 0.0036 1.2E-07 58.0 2.6 29 221-249 13-41 (219)
260 3tau_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 56.6 3.1 27 222-248 6-32 (208)
261 1znw_A Guanylate kinase, GMP k 95.8 0.0039 1.3E-07 56.9 2.6 28 221-248 17-44 (207)
262 1z6g_A Guanylate kinase; struc 95.7 0.0039 1.3E-07 57.6 2.2 27 222-248 21-47 (218)
263 3a00_A Guanylate kinase, GMP k 95.5 0.0044 1.5E-07 55.5 1.9 23 226-248 3-25 (186)
264 4ido_A Atlastin-1; GTPase, GTP 95.5 0.012 4E-07 60.3 5.2 20 226-245 69-88 (457)
265 2pcj_A ABC transporter, lipopr 95.4 0.0071 2.4E-07 56.2 3.1 27 222-248 28-54 (224)
266 3tif_A Uncharacterized ABC tra 95.4 0.007 2.4E-07 56.7 3.1 28 222-249 29-56 (235)
267 3asz_A Uridine kinase; cytidin 95.4 0.0059 2E-07 55.6 2.4 25 223-247 5-29 (211)
268 2qor_A Guanylate kinase; phosp 95.4 0.0049 1.7E-07 56.0 1.8 27 221-247 9-35 (204)
269 2j41_A Guanylate kinase; GMP, 95.4 0.0065 2.2E-07 54.8 2.5 27 222-248 4-30 (207)
270 3cwq_A Para family chromosome 95.3 0.0035 1.2E-07 57.5 0.7 108 227-353 3-134 (209)
271 1kag_A SKI, shikimate kinase I 95.3 0.006 2E-07 53.5 2.1 24 224-247 4-27 (173)
272 2cbz_A Multidrug resistance-as 95.3 0.0084 2.9E-07 56.2 3.1 28 222-249 29-56 (237)
273 4gp7_A Metallophosphoesterase; 95.3 0.0079 2.7E-07 53.1 2.7 24 223-246 8-31 (171)
274 3ec2_A DNA replication protein 95.2 0.011 3.6E-07 52.5 3.4 25 223-247 37-61 (180)
275 2pze_A Cystic fibrosis transme 95.2 0.009 3.1E-07 55.6 3.0 27 222-248 32-58 (229)
276 1g6h_A High-affinity branched- 95.2 0.0092 3.1E-07 56.6 3.0 28 222-249 31-58 (257)
277 1htw_A HI0065; nucleotide-bind 95.2 0.0074 2.5E-07 52.9 2.2 27 222-248 31-57 (158)
278 2onk_A Molybdate/tungstate ABC 95.2 0.0084 2.9E-07 56.4 2.7 23 226-248 26-48 (240)
279 3gfo_A Cobalt import ATP-bindi 95.2 0.0092 3.2E-07 57.3 3.0 27 222-248 32-58 (275)
280 2ff7_A Alpha-hemolysin translo 95.2 0.0094 3.2E-07 56.2 3.0 27 222-248 33-59 (247)
281 1sgw_A Putative ABC transporte 95.2 0.0083 2.8E-07 55.4 2.6 26 223-248 34-59 (214)
282 1b0u_A Histidine permease; ABC 95.1 0.0097 3.3E-07 56.7 3.1 28 222-249 30-57 (262)
283 1mv5_A LMRA, multidrug resista 95.1 0.009 3.1E-07 56.2 2.8 27 222-248 26-52 (243)
284 4g1u_C Hemin import ATP-bindin 95.1 0.0095 3.2E-07 56.9 3.0 28 222-249 35-62 (266)
285 2ghi_A Transport protein; mult 95.1 0.01 3.6E-07 56.4 3.1 27 222-248 44-70 (260)
286 1ji0_A ABC transporter; ATP bi 95.1 0.01 3.5E-07 55.7 3.0 27 222-248 30-56 (240)
287 2bbw_A Adenylate kinase 4, AK4 95.0 0.012 4E-07 55.2 3.3 26 223-248 26-54 (246)
288 2qi9_C Vitamin B12 import ATP- 95.0 0.011 3.6E-07 56.0 3.0 27 222-248 24-50 (249)
289 2olj_A Amino acid ABC transpor 95.0 0.011 3.7E-07 56.4 3.1 27 222-248 48-74 (263)
290 4eun_A Thermoresistant glucoki 95.0 0.0096 3.3E-07 53.9 2.6 25 223-247 28-52 (200)
291 1wsr_A Aminomethyltransferase; 95.0 0.063 2.1E-06 53.8 8.8 54 18-71 54-107 (375)
292 1vpl_A ABC transporter, ATP-bi 95.0 0.011 3.8E-07 56.1 3.1 27 222-248 39-65 (256)
293 2ihy_A ABC transporter, ATP-bi 95.0 0.011 3.8E-07 56.8 3.0 28 222-249 45-72 (279)
294 2v9p_A Replication protein E1; 95.0 0.0095 3.3E-07 58.0 2.5 26 221-246 123-148 (305)
295 3lnc_A Guanylate kinase, GMP k 94.9 0.0081 2.8E-07 55.7 1.9 27 222-248 25-52 (231)
296 2ixe_A Antigen peptide transpo 94.9 0.012 4E-07 56.4 3.1 27 222-248 43-69 (271)
297 1wos_A Aminomethyltransferase; 94.9 0.075 2.6E-06 53.0 9.1 77 18-103 49-125 (364)
298 2zu0_C Probable ATP-dependent 94.9 0.012 4E-07 56.2 3.0 26 222-247 44-69 (267)
299 1ixz_A ATP-dependent metallopr 94.9 0.015 5.1E-07 54.6 3.7 22 226-247 51-72 (254)
300 2d2e_A SUFC protein; ABC-ATPas 94.9 0.012 4E-07 55.6 3.0 26 222-247 27-52 (250)
301 1bif_A 6-phosphofructo-2-kinas 94.9 0.0011 3.8E-08 68.7 -4.7 26 222-247 37-62 (469)
302 3cio_A ETK, tyrosine-protein k 94.9 0.13 4.3E-06 49.8 10.3 65 272-353 214-280 (299)
303 2nq2_C Hypothetical ABC transp 94.9 0.013 4.3E-07 55.6 2.9 28 222-249 29-56 (253)
304 3gir_A Aminomethyltransferase; 94.9 0.068 2.3E-06 53.9 8.5 54 18-71 82-135 (393)
305 1yx2_A Aminomethyltransferase; 94.8 0.072 2.4E-06 53.1 8.6 77 18-103 53-129 (365)
306 2yz2_A Putative ABC transporte 94.8 0.013 4.6E-07 55.8 3.1 27 222-248 31-57 (266)
307 3fvq_A Fe(3+) IONS import ATP- 94.8 0.032 1.1E-06 55.5 5.8 27 223-249 29-55 (359)
308 3b85_A Phosphate starvation-in 94.8 0.0098 3.4E-07 54.6 1.9 25 223-247 21-45 (208)
309 3nh6_A ATP-binding cassette SU 94.7 0.01 3.5E-07 57.8 2.1 27 222-248 78-104 (306)
310 1cke_A CK, MSSA, protein (cyti 94.7 0.015 5.1E-07 53.4 3.1 24 224-247 5-28 (227)
311 2eyu_A Twitching motility prot 94.7 0.012 4E-07 56.1 2.3 26 222-247 23-48 (261)
312 3bfv_A CAPA1, CAPB2, membrane 94.7 0.1 3.5E-06 49.7 8.9 65 272-353 192-258 (271)
313 2i3b_A HCR-ntpase, human cance 94.7 0.011 3.8E-07 53.3 2.0 22 226-247 3-24 (189)
314 1rz3_A Hypothetical protein rb 94.6 0.017 5.9E-07 52.3 3.2 25 222-246 20-44 (201)
315 2jeo_A Uridine-cytidine kinase 94.6 0.012 4.1E-07 55.1 2.2 27 221-247 22-48 (245)
316 2bdt_A BH3686; alpha-beta prot 94.6 0.014 4.8E-07 52.0 2.6 21 226-246 4-24 (189)
317 1vly_A SPOT PR51, unknown prot 94.6 0.098 3.4E-06 51.6 8.9 78 17-104 36-113 (338)
318 3aez_A Pantothenate kinase; tr 94.6 0.012 4.2E-07 57.5 2.2 27 221-247 87-113 (312)
319 1iy2_A ATP-dependent metallopr 94.6 0.02 6.8E-07 54.6 3.7 22 226-247 75-96 (278)
320 3la6_A Tyrosine-protein kinase 94.6 0.21 7.3E-06 47.9 11.0 66 272-354 202-269 (286)
321 2gza_A Type IV secretion syste 94.6 0.016 5.4E-07 57.9 3.0 28 221-248 172-199 (361)
322 3cm0_A Adenylate kinase; ATP-b 94.6 0.014 4.8E-07 51.8 2.4 24 223-246 3-26 (186)
323 2bbs_A Cystic fibrosis transme 94.5 0.018 6.1E-07 55.7 3.2 28 222-249 62-89 (290)
324 1knq_A Gluconate kinase; ALFA/ 94.5 0.014 4.8E-07 51.3 2.3 23 224-246 8-30 (175)
325 1v5v_A Aminomethyltransferase; 94.5 0.086 2.9E-06 53.3 8.4 54 18-71 53-106 (401)
326 1vlo_A Aminomethyltransferase; 94.5 0.093 3.2E-06 52.7 8.5 54 18-71 62-116 (381)
327 1sxj_A Activator 1 95 kDa subu 94.5 0.46 1.6E-05 49.5 14.2 23 225-247 78-100 (516)
328 3uie_A Adenylyl-sulfate kinase 94.5 0.018 6.1E-07 52.1 2.9 26 222-247 23-48 (200)
329 2qt1_A Nicotinamide riboside k 94.5 0.018 6.2E-07 52.2 3.0 26 222-247 19-44 (207)
330 1odf_A YGR205W, hypothetical 3 94.5 0.035 1.2E-06 53.6 5.2 26 222-247 29-54 (290)
331 2v54_A DTMP kinase, thymidylat 94.4 0.019 6.5E-07 51.6 3.0 25 223-247 3-27 (204)
332 4b4t_L 26S protease subunit RP 94.4 0.048 1.6E-06 55.7 6.2 51 197-247 186-238 (437)
333 2pjz_A Hypothetical protein ST 94.4 0.019 6.5E-07 54.7 3.0 25 224-248 30-54 (263)
334 3lw7_A Adenylate kinase relate 94.4 0.02 6.7E-07 49.7 2.9 20 225-244 2-21 (179)
335 3vaa_A Shikimate kinase, SK; s 94.3 0.022 7.4E-07 51.4 3.2 25 222-246 23-47 (199)
336 1g29_1 MALK, maltose transport 94.3 0.047 1.6E-06 54.6 5.8 27 223-249 28-54 (372)
337 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.017 5.9E-07 56.8 2.5 26 223-248 170-195 (330)
338 1gvn_B Zeta; postsegregational 94.3 0.041 1.4E-06 53.0 5.1 24 223-246 32-55 (287)
339 2p5t_B PEZT; postsegregational 94.3 0.027 9.3E-07 53.0 3.7 26 222-247 30-55 (253)
340 2f1r_A Molybdopterin-guanine d 94.2 0.01 3.6E-07 52.7 0.7 22 226-247 4-25 (171)
341 2x8a_A Nuclear valosin-contain 94.2 0.049 1.7E-06 52.0 5.6 22 226-247 46-67 (274)
342 2rhm_A Putative kinase; P-loop 94.2 0.022 7.4E-07 50.7 2.9 24 223-246 4-27 (193)
343 2if2_A Dephospho-COA kinase; a 94.2 0.019 6.5E-07 51.8 2.5 22 225-246 2-23 (204)
344 1kht_A Adenylate kinase; phosp 94.2 0.024 8.1E-07 50.2 3.0 23 224-246 3-25 (192)
345 3kb2_A SPBC2 prophage-derived 94.2 0.022 7.5E-07 49.5 2.7 22 226-247 3-24 (173)
346 1sq5_A Pantothenate kinase; P- 94.2 0.057 1.9E-06 52.5 5.9 26 222-247 78-103 (308)
347 3tqc_A Pantothenate kinase; bi 94.2 0.038 1.3E-06 54.2 4.7 24 223-246 91-114 (321)
348 4a74_A DNA repair and recombin 94.1 0.018 6.1E-07 52.8 2.1 26 222-247 23-48 (231)
349 2ehv_A Hypothetical protein PH 94.1 0.023 7.8E-07 52.7 2.8 24 222-245 28-51 (251)
350 1np6_A Molybdopterin-guanine d 94.0 0.023 7.8E-07 50.6 2.6 23 225-247 7-29 (174)
351 1nn5_A Similar to deoxythymidy 94.0 0.028 9.7E-07 50.8 3.3 25 222-246 7-31 (215)
352 2oap_1 GSPE-2, type II secreti 94.0 0.023 7.7E-07 59.5 2.9 26 222-247 258-283 (511)
353 4e22_A Cytidylate kinase; P-lo 94.0 0.028 9.5E-07 53.0 3.3 24 222-245 25-48 (252)
354 3fb4_A Adenylate kinase; psych 94.0 0.026 8.7E-07 51.4 2.9 22 225-246 1-22 (216)
355 3tui_C Methionine import ATP-b 94.0 0.025 8.6E-07 56.4 3.0 27 223-249 53-79 (366)
356 2c95_A Adenylate kinase 1; tra 94.0 0.031 1.1E-06 49.8 3.4 26 221-246 6-31 (196)
357 1jjv_A Dephospho-COA kinase; P 94.0 0.025 8.5E-07 51.2 2.7 22 225-246 3-24 (206)
358 1oxx_K GLCV, glucose, ABC tran 93.9 0.038 1.3E-06 54.9 4.3 27 223-249 30-56 (353)
359 1ly1_A Polynucleotide kinase; 93.9 0.026 9E-07 49.4 2.8 21 226-246 4-24 (181)
360 1z47_A CYSA, putative ABC-tran 93.9 0.026 8.8E-07 56.2 3.0 27 223-249 40-66 (355)
361 3dl0_A Adenylate kinase; phosp 93.9 0.027 9.4E-07 51.3 2.9 22 225-246 1-22 (216)
362 2yyz_A Sugar ABC transporter, 93.9 0.027 9.3E-07 56.1 3.0 27 223-249 28-54 (359)
363 2wwf_A Thymidilate kinase, put 93.9 0.03 1E-06 50.6 3.1 25 222-246 8-32 (212)
364 1lw7_A Transcriptional regulat 93.9 0.019 6.5E-07 57.3 1.9 25 224-248 170-194 (365)
365 2jaq_A Deoxyguanosine kinase; 93.8 0.029 1E-06 50.2 2.9 21 226-246 2-22 (205)
366 2it1_A 362AA long hypothetical 93.8 0.029 9.9E-07 56.0 3.0 27 223-249 28-54 (362)
367 2kjq_A DNAA-related protein; s 93.8 0.023 7.8E-07 49.1 2.0 25 223-247 35-59 (149)
368 1qhx_A CPT, protein (chloramph 93.8 0.032 1.1E-06 48.9 3.1 23 225-247 4-26 (178)
369 1aky_A Adenylate kinase; ATP:A 93.8 0.033 1.1E-06 51.0 3.2 24 223-246 3-26 (220)
370 3rlf_A Maltose/maltodextrin im 93.8 0.029 1E-06 56.3 3.0 27 223-249 28-54 (381)
371 1v43_A Sugar-binding transport 93.7 0.031 1E-06 56.0 3.0 28 222-249 35-62 (372)
372 2vp4_A Deoxynucleoside kinase; 93.7 0.029 1E-06 51.9 2.7 26 222-247 18-43 (230)
373 3t61_A Gluconokinase; PSI-biol 93.7 0.03 1E-06 50.5 2.7 24 224-247 18-41 (202)
374 1y63_A LMAJ004144AAA protein; 93.7 0.035 1.2E-06 49.4 3.1 25 223-247 9-33 (184)
375 2plr_A DTMP kinase, probable t 93.6 0.032 1.1E-06 50.3 2.9 23 224-246 4-26 (213)
376 3jvv_A Twitching mobility prot 93.6 0.023 7.9E-07 56.6 2.0 22 226-247 125-146 (356)
377 2gag_C Heterotetrameric sarcos 93.5 0.052 1.8E-06 49.8 4.1 79 18-113 119-201 (210)
378 1zd8_A GTP:AMP phosphotransfer 93.5 0.038 1.3E-06 50.9 3.2 24 223-246 6-29 (227)
379 1nks_A Adenylate kinase; therm 93.5 0.036 1.2E-06 49.1 2.9 21 226-246 3-23 (194)
380 3gd7_A Fusion complex of cysti 93.5 0.036 1.2E-06 55.9 3.2 27 222-248 45-71 (390)
381 3d31_A Sulfate/molybdate ABC t 93.5 0.026 8.9E-07 56.0 2.1 27 223-249 25-51 (348)
382 2bwj_A Adenylate kinase 5; pho 93.5 0.04 1.4E-06 49.2 3.2 26 222-247 10-35 (199)
383 3tlx_A Adenylate kinase 2; str 93.5 0.045 1.5E-06 51.2 3.6 26 221-246 26-51 (243)
384 3ttg_A Putative aminomethyltra 93.4 0.12 4.2E-06 51.3 6.9 55 17-71 42-96 (355)
385 2cdn_A Adenylate kinase; phosp 93.4 0.042 1.4E-06 49.5 3.1 25 222-246 18-42 (201)
386 1jbk_A CLPB protein; beta barr 93.4 0.066 2.2E-06 46.8 4.4 24 224-247 43-66 (195)
387 1vht_A Dephospho-COA kinase; s 93.3 0.038 1.3E-06 50.4 2.8 24 223-246 3-26 (218)
388 2ewv_A Twitching motility prot 93.3 0.03 1E-06 56.1 2.2 26 222-247 134-159 (372)
389 1lv7_A FTSH; alpha/beta domain 93.3 0.071 2.4E-06 49.9 4.7 24 224-247 45-68 (257)
390 1e4v_A Adenylate kinase; trans 93.2 0.043 1.5E-06 50.0 3.0 22 225-246 1-22 (214)
391 3trf_A Shikimate kinase, SK; a 93.2 0.045 1.5E-06 48.4 3.1 23 224-246 5-27 (185)
392 2yvu_A Probable adenylyl-sulfa 93.2 0.034 1.2E-06 49.4 2.2 26 222-247 11-36 (186)
393 3qf7_A RAD50; ABC-ATPase, ATPa 93.2 0.15 5E-06 50.9 7.1 22 223-245 23-44 (365)
394 1uf9_A TT1252 protein; P-loop, 93.2 0.044 1.5E-06 49.1 3.0 25 223-247 7-31 (203)
395 4b4t_J 26S protease regulatory 93.2 0.074 2.5E-06 53.6 4.9 51 197-247 153-205 (405)
396 1tev_A UMP-CMP kinase; ploop, 93.2 0.042 1.4E-06 48.7 2.8 23 224-246 3-25 (196)
397 3h4m_A Proteasome-activating n 93.2 0.11 3.7E-06 49.3 5.9 26 222-247 49-74 (285)
398 2pez_A Bifunctional 3'-phospho 93.1 0.045 1.5E-06 48.3 2.9 25 223-247 4-28 (179)
399 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.033 1.1E-06 57.4 2.2 28 221-248 135-162 (460)
400 3iij_A Coilin-interacting nucl 93.1 0.044 1.5E-06 48.3 2.7 24 223-246 10-33 (180)
401 1xwi_A SKD1 protein; VPS4B, AA 93.0 0.11 3.7E-06 50.8 5.8 23 225-247 46-68 (322)
402 3kta_A Chromosome segregation 93.0 0.046 1.6E-06 48.3 2.7 21 226-246 28-48 (182)
403 3syl_A Protein CBBX; photosynt 93.0 0.12 4.2E-06 49.5 6.0 24 223-246 66-89 (309)
404 3be4_A Adenylate kinase; malar 92.9 0.056 1.9E-06 49.4 3.3 24 223-246 4-27 (217)
405 1zak_A Adenylate kinase; ATP:A 92.9 0.047 1.6E-06 50.0 2.8 24 223-246 4-27 (222)
406 2pt5_A Shikimate kinase, SK; a 92.9 0.05 1.7E-06 47.2 2.8 22 225-246 1-22 (168)
407 3co5_A Putative two-component 92.8 0.13 4.4E-06 43.7 5.3 25 223-247 26-50 (143)
408 1p9r_A General secretion pathw 92.8 0.036 1.2E-06 56.4 2.0 23 225-247 168-190 (418)
409 3sr0_A Adenylate kinase; phosp 92.8 0.052 1.8E-06 49.6 2.9 23 225-247 1-23 (206)
410 2qz4_A Paraplegin; AAA+, SPG7, 92.8 0.09 3.1E-06 49.1 4.6 24 223-246 38-61 (262)
411 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.055 1.9E-06 51.1 2.9 23 224-246 4-26 (260)
412 3b60_A Lipid A export ATP-bind 92.6 0.055 1.9E-06 57.5 3.2 25 224-248 369-393 (582)
413 3n70_A Transport activator; si 92.6 0.13 4.5E-06 43.7 5.0 26 222-247 22-47 (145)
414 1gtv_A TMK, thymidylate kinase 92.6 0.031 1E-06 50.6 1.0 22 226-247 2-23 (214)
415 2obl_A ESCN; ATPase, hydrolase 92.6 0.047 1.6E-06 54.1 2.4 27 222-248 69-95 (347)
416 2w0m_A SSO2452; RECA, SSPF, un 92.5 0.057 2E-06 49.2 2.8 25 222-246 21-45 (235)
417 3cf0_A Transitional endoplasmi 92.5 0.18 6.1E-06 48.6 6.5 26 222-247 47-72 (301)
418 1via_A Shikimate kinase; struc 92.5 0.051 1.8E-06 47.7 2.4 21 226-246 6-26 (175)
419 1yqt_A RNAse L inhibitor; ATP- 92.5 0.058 2E-06 56.8 3.1 27 222-248 45-71 (538)
420 1m7g_A Adenylylsulfate kinase; 92.5 0.084 2.9E-06 47.9 3.8 27 221-247 22-48 (211)
421 4a82_A Cystic fibrosis transme 92.4 0.054 1.8E-06 57.5 2.8 25 224-248 367-391 (578)
422 3r20_A Cytidylate kinase; stru 92.4 0.066 2.3E-06 49.9 3.1 25 222-246 7-31 (233)
423 3bos_A Putative DNA replicatio 92.4 0.12 4E-06 47.2 4.8 25 223-247 51-75 (242)
424 2pbr_A DTMP kinase, thymidylat 92.4 0.065 2.2E-06 47.4 2.9 21 226-246 2-22 (195)
425 2z0h_A DTMP kinase, thymidylat 92.3 0.067 2.3E-06 47.6 2.9 22 226-247 2-23 (197)
426 2vli_A Antibiotic resistance p 92.3 0.055 1.9E-06 47.6 2.2 23 224-246 5-27 (183)
427 4eaq_A DTMP kinase, thymidylat 92.3 0.062 2.1E-06 49.8 2.7 26 222-247 24-49 (229)
428 1xjc_A MOBB protein homolog; s 92.2 0.071 2.4E-06 47.1 2.9 22 225-246 5-26 (169)
429 2yl4_A ATP-binding cassette SU 92.2 0.056 1.9E-06 57.6 2.6 25 224-248 370-394 (595)
430 2xb4_A Adenylate kinase; ATP-b 92.2 0.068 2.3E-06 49.1 2.9 22 225-246 1-22 (223)
431 1nij_A Hypothetical protein YJ 92.2 0.045 1.6E-06 53.5 1.7 22 226-247 6-27 (318)
432 1ukz_A Uridylate kinase; trans 92.2 0.071 2.4E-06 47.9 2.9 23 224-246 15-37 (203)
433 3b5x_A Lipid A export ATP-bind 92.2 0.062 2.1E-06 57.1 2.9 26 223-248 368-393 (582)
434 1cr0_A DNA primase/helicase; R 92.2 0.061 2.1E-06 51.6 2.6 27 221-247 32-58 (296)
435 2iyv_A Shikimate kinase, SK; t 92.1 0.063 2.2E-06 47.4 2.5 22 225-246 3-24 (184)
436 2p65_A Hypothetical protein PF 92.1 0.092 3.2E-06 45.7 3.5 24 224-247 43-66 (187)
437 3qf4_B Uncharacterized ABC tra 92.1 0.062 2.1E-06 57.3 2.8 25 224-248 381-405 (598)
438 1in4_A RUVB, holliday junction 92.1 0.051 1.7E-06 53.4 1.9 22 226-247 53-74 (334)
439 3qf4_A ABC transporter, ATP-bi 92.0 0.068 2.3E-06 56.9 3.0 25 224-248 369-393 (587)
440 3d8b_A Fidgetin-like protein 1 92.0 0.19 6.4E-06 49.8 5.9 25 223-247 116-140 (357)
441 1qf9_A UMP/CMP kinase, protein 91.9 0.081 2.8E-06 46.7 2.9 22 225-246 7-28 (194)
442 3vfd_A Spastin; ATPase, microt 91.9 0.22 7.5E-06 49.8 6.4 24 224-247 148-171 (389)
443 1fnn_A CDC6P, cell division co 91.9 0.15 5.2E-06 50.4 5.2 22 226-247 46-67 (389)
444 2cvh_A DNA repair and recombin 91.9 0.084 2.9E-06 47.8 3.0 25 222-246 18-42 (220)
445 1ak2_A Adenylate kinase isoenz 91.8 0.086 2.9E-06 48.7 3.1 25 222-246 14-38 (233)
446 3j16_B RLI1P; ribosome recycli 91.8 0.077 2.6E-06 56.6 3.1 26 223-248 102-127 (608)
447 4b4t_M 26S protease regulatory 91.8 0.13 4.6E-06 52.4 4.7 50 198-247 187-238 (434)
448 3ozx_A RNAse L inhibitor; ATP 91.8 0.076 2.6E-06 55.8 3.0 26 223-248 24-49 (538)
449 3te6_A Regulatory protein SIR3 91.8 0.22 7.6E-06 48.6 6.1 26 222-247 43-68 (318)
450 2qby_A CDC6 homolog 1, cell di 91.7 0.14 4.7E-06 50.4 4.7 25 223-247 44-68 (386)
451 3bk7_A ABC transporter ATP-bin 91.7 0.081 2.8E-06 56.5 3.1 27 222-248 115-141 (607)
452 2dpy_A FLII, flagellum-specifi 91.7 0.07 2.4E-06 54.6 2.5 28 221-248 154-181 (438)
453 4b4t_K 26S protease regulatory 91.7 0.14 4.6E-06 52.2 4.6 50 198-247 178-229 (428)
454 3nwj_A ATSK2; P loop, shikimat 91.7 0.079 2.7E-06 49.9 2.7 23 224-246 48-70 (250)
455 1f2t_A RAD50 ABC-ATPase; DNA d 91.6 0.084 2.9E-06 45.4 2.6 19 227-245 26-44 (149)
456 2ze6_A Isopentenyl transferase 91.6 0.079 2.7E-06 49.9 2.6 21 226-246 3-23 (253)
457 2qmh_A HPR kinase/phosphorylas 91.5 0.12 4E-06 47.0 3.5 28 223-250 33-60 (205)
458 4b4t_I 26S protease regulatory 91.5 0.15 5.3E-06 51.7 4.8 51 197-247 187-239 (437)
459 3euj_A Chromosome partition pr 91.5 0.064 2.2E-06 55.5 2.0 22 225-246 30-51 (483)
460 1n0w_A DNA repair protein RAD5 91.4 0.091 3.1E-06 48.3 2.8 27 221-247 21-47 (243)
461 3b9p_A CG5977-PA, isoform A; A 91.4 0.18 6.1E-06 48.1 5.0 25 223-247 53-77 (297)
462 1svm_A Large T antigen; AAA+ f 91.4 0.081 2.8E-06 53.0 2.5 26 221-246 166-191 (377)
463 2chg_A Replication factor C sm 91.3 0.19 6.6E-06 44.8 4.9 22 226-247 40-61 (226)
464 1e6c_A Shikimate kinase; phosp 91.3 0.09 3.1E-06 45.7 2.5 21 226-246 4-24 (173)
465 1p5z_B DCK, deoxycytidine kina 91.3 0.092 3.1E-06 49.5 2.7 27 221-247 21-47 (263)
466 3tfi_A GCVT-like aminomethyltr 91.3 0.17 5.8E-06 50.5 4.7 54 18-71 61-114 (369)
467 3t15_A Ribulose bisphosphate c 91.2 0.15 5.2E-06 49.0 4.2 25 223-247 35-59 (293)
468 3ozx_A RNAse L inhibitor; ATP 91.1 0.097 3.3E-06 55.0 3.0 27 223-249 293-319 (538)
469 1yqt_A RNAse L inhibitor; ATP- 91.1 0.097 3.3E-06 55.0 2.9 27 223-249 311-337 (538)
470 2gag_A Heterotetrameric sarcos 91.0 0.41 1.4E-05 53.9 8.2 54 18-71 630-683 (965)
471 4b4t_H 26S protease regulatory 91.0 0.16 5.6E-06 52.0 4.4 52 196-247 213-266 (467)
472 1q3t_A Cytidylate kinase; nucl 90.9 0.12 4.1E-06 47.8 3.1 25 222-246 14-38 (236)
473 2w58_A DNAI, primosome compone 90.8 0.22 7.6E-06 44.5 4.7 23 225-247 55-77 (202)
474 3bk7_A ABC transporter ATP-bin 90.7 0.11 3.8E-06 55.4 2.9 27 223-249 381-407 (607)
475 1uj2_A Uridine-cytidine kinase 90.6 0.12 4.1E-06 48.3 2.9 24 223-246 21-44 (252)
476 2zan_A Vacuolar protein sortin 90.6 0.2 6.8E-06 51.2 4.7 24 224-247 167-190 (444)
477 2f6r_A COA synthase, bifunctio 90.5 0.13 4.4E-06 49.2 3.0 22 224-245 75-96 (281)
478 1zuh_A Shikimate kinase; alpha 90.5 0.13 4.5E-06 44.6 2.7 21 226-246 9-29 (168)
479 2ce7_A Cell division protein F 90.4 0.13 4.4E-06 53.2 3.0 23 225-247 50-72 (476)
480 3cr8_A Sulfate adenylyltranfer 90.3 0.093 3.2E-06 55.3 1.9 27 221-247 366-392 (552)
481 4f4c_A Multidrug resistance pr 90.3 0.099 3.4E-06 61.0 2.3 24 224-247 1105-1128(1321)
482 2qby_B CDC6 homolog 3, cell di 90.2 0.29 9.9E-06 48.3 5.4 24 224-247 45-68 (384)
483 3m6a_A ATP-dependent protease 90.2 0.15 5.3E-06 53.6 3.5 25 223-247 107-131 (543)
484 2dhr_A FTSH; AAA+ protein, hex 90.0 0.25 8.7E-06 51.3 4.9 22 226-247 66-87 (499)
485 2v1u_A Cell division control p 89.9 0.2 6.8E-06 49.3 3.9 25 223-247 43-67 (387)
486 3umf_A Adenylate kinase; rossm 89.9 0.16 5.5E-06 46.7 2.9 22 226-247 31-52 (217)
487 3j16_B RLI1P; ribosome recycli 89.8 0.14 4.6E-06 54.7 2.6 24 226-249 380-403 (608)
488 1nlf_A Regulatory protein REPA 89.8 0.16 5.6E-06 48.2 3.0 25 222-246 28-52 (279)
489 4aby_A DNA repair protein RECN 89.7 0.066 2.2E-06 54.0 0.1 24 221-245 58-81 (415)
490 3u61_B DNA polymerase accessor 89.7 1.6 5.4E-05 42.0 10.1 21 227-247 51-71 (324)
491 1zcb_A G alpha I/13; GTP-bindi 89.6 0.16 5.4E-06 50.6 2.8 24 221-244 30-53 (362)
492 2grj_A Dephospho-COA kinase; T 89.5 0.16 5.6E-06 45.7 2.6 25 223-247 11-35 (192)
493 1ofh_A ATP-dependent HSL prote 89.4 0.38 1.3E-05 45.8 5.4 24 223-246 49-72 (310)
494 3eie_A Vacuolar protein sortin 89.4 0.29 9.9E-06 47.6 4.5 24 224-247 51-74 (322)
495 1njg_A DNA polymerase III subu 89.4 0.16 5.5E-06 45.9 2.6 21 226-246 47-67 (250)
496 1qhl_A Protein (cell division 89.3 0.028 9.6E-07 52.3 -2.7 22 227-248 30-51 (227)
497 1ko7_A HPR kinase/phosphatase; 89.3 0.19 6.6E-06 48.9 3.1 32 223-254 143-174 (314)
498 1tue_A Replication protein E1; 89.2 0.14 4.8E-06 46.8 1.9 21 226-246 60-80 (212)
499 1ltq_A Polynucleotide kinase; 89.0 0.17 5.9E-06 48.4 2.6 21 226-246 4-24 (301)
500 3qks_A DNA double-strand break 89.0 0.18 6.2E-06 45.7 2.6 19 227-245 26-44 (203)
No 1
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=100.00 E-value=1.8e-108 Score=861.87 Aligned_cols=448 Identities=33% Similarity=0.561 Sum_probs=377.4
Q ss_pred CCcEEEecCCCCCceEEEEEeecccHHHHHHHHhhcc---c--CCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccC
Q psy9409 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKT---K--KQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTG 79 (472)
Q Consensus 5 ~~ti~a~~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tg 79 (472)
+|||||||||+|+|||||||||||+|++|++++|++. + ..++||+++||+|+|+ |++|||+|++||+|||||||
T Consensus 15 ~dtI~Aiat~~g~~~i~iiRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~l~~~f~~P~s~Tg 93 (476)
T 3gee_A 15 GHPIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYDG-EEMVDEVIALVFRAPRSFTA 93 (476)
T ss_dssp CCCEEEECSCSSCCSEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEESS-SCEEEEEEEEEEBTTBSSSS
T ss_pred CCCEEEeCCCCcCcEEEEEEeechhHHHHHHHHhCcccccccccCCCCCEEEEEEEecC-CcccceEEEEEecCCCCCCC
Confidence 4999999999999999999999999999999999752 1 2478999999999996 78999999999999999999
Q ss_pred CceEEEeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhcChh
Q psy9409 80 EDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF 159 (472)
Q Consensus 80 ed~~E~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~g~l 159 (472)
||++|||||||++++++||+.|++. |+|+|+|||||+|||+||||||+|||||.|||+|+|+.+++.|++|++|.+
T Consensus 94 Ed~~E~~~HGg~~v~~~~l~~~~~~----g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~G~l 169 (476)
T 3gee_A 94 EQMVEFTCHGGPVVVGRVLRLMLDN----GCRLAEPGEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDL 169 (476)
T ss_dssp SCEEEEEEECCHHHHHHHHHHHHHT----TCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHHTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHC----CCeecCCcchhhhhhccCcCcHHHHHHHHHHHhCCCHHHHHHHHHhhCCcH
Confidence 9999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhH
Q psy9409 160 SKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSS 239 (472)
Q Consensus 160 ~~~~~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSS 239 (472)
++.+..||++|+++++++|+.|||+||+++ ..+...+.+++..+.++++.+++....++..+++++|+++|+|||||||
T Consensus 170 s~~i~~lr~~L~~~~a~iea~iDf~eedi~-~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSS 248 (476)
T 3gee_A 170 SVRLGGLREQLIRSCALIELELDFSEEDVE-FQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKST 248 (476)
T ss_dssp HHHHHHHHTHHHHHHHTTTTCSSCCSSCCS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHhheecCCCccccc-chhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHH
Confidence 999999999999999999999999999888 7889999999999999999999998888999999999999999999999
Q ss_pred HHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEe
Q psy9409 240 LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD 319 (472)
Q Consensus 240 Lin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D 319 (472)
|+|+|++.+.++++++++||+|.....+.++|.++.+|||||++++ .+.++.+++.++..++..+|++|+|+|
T Consensus 249 Lln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~-------~~~ve~~gi~~~~~~~~~aD~vl~VvD 321 (476)
T 3gee_A 249 LLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREA-------GEEIEHEGIRRSRMKMAEADLILYLLD 321 (476)
T ss_dssp HHHHCC------------------CEEEEETTEEEEEEC---------------------------CCCSSCSEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcc-------hhHHHHHHHHHHHhhcccCCEEEEEEE
Confidence 9999999988889999999999999999999999999999999987 888888888899999999999999999
Q ss_pred CCCCCCch---HHHHHHHhCCCCCCEEEEEecCCCCcCccc----ccccCCCceEEEEeccCccHHHHHHHHHHHhh-cc
Q psy9409 320 ARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN----INYKNNIANIYLSASKRIGINLLRNTLLDLIE-KT 391 (472)
Q Consensus 320 ~s~~~~~~---~~~~il~~l~~~~piivV~NK~Dl~~~~~~----~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~-~~ 391 (472)
++++.+.. .+..+++.+. +.|+++|+||+|+...... +.+....+++++||++|.|+++|+++|.+.+. ..
T Consensus 322 ~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~~~~ 400 (476)
T 3gee_A 322 LGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLD 400 (476)
T ss_dssp TTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHHSSC
T ss_pred CCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHhhcc
Confidence 99986653 5666777775 8999999999999876531 22221368999999999999999999999986 43
Q ss_pred C-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCC
Q psy9409 392 Q-TIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCI 470 (472)
Q Consensus 392 ~-~~~~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCi 470 (472)
. ..+ ..+.++.||++++++|..+|+.++..+..+ .+.++++++|+.|++.||+|||++++||+||+|||+|||
T Consensus 401 ~~~~~-~~~~~~~R~~~~l~~a~~~L~~~~~~l~~~-----~~~dl~a~~lr~a~~~Lg~itG~~~~edlL~~iF~~FCi 474 (476)
T 3gee_A 401 KLHEA-SVLVTSLRHYEALRNASDALQNALELIAHE-----SETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKFCI 474 (476)
T ss_dssp CCCTT-SCCCCSHHHHHHHHHHHHHHHHHHTTTTTT-----CCSSSHHHHHHHHHHHHHHHHTSSCCSSHHHHHHTTSCT
T ss_pred CCCCc-ccccccHHHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCC
Confidence 2 233 568899999999999999999999877666 667999999999999999999999999999999999999
Q ss_pred CC
Q psy9409 471 GK 472 (472)
Q Consensus 471 GK 472 (472)
||
T Consensus 475 GK 476 (476)
T 3gee_A 475 GK 476 (476)
T ss_dssp TC
T ss_pred CC
Confidence 99
No 2
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=100.00 E-value=3.2e-107 Score=849.46 Aligned_cols=450 Identities=35% Similarity=0.561 Sum_probs=391.2
Q ss_pred CCCCCCcEEEecCC--CCCceEEEEEeecccHHHHHHHHhhcc-cCCCCCceeEeeEEEcC-CCceeceEEEEEeCCCCC
Q psy9409 1 MLTKNSPIIGIATP--PGRGGVGIIRLSGKNLWSIVEIVCKKT-KKQLKPRFATYSSFFCK-NNNIIDKGLVIYFKAPHS 76 (472)
Q Consensus 1 ~~~~~~ti~a~~t~--~g~~ai~iiR~sG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~p~s 76 (472)
|| .+||||||||| +|+|||||||||||+|++|++++|++. ...++||+++||+|+|+ +|++|||+|++||+||||
T Consensus 4 ~~-~~dtI~A~at~~~~g~~~i~iiRiSG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~p~s 82 (462)
T 3geh_A 4 MA-ITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRS 82 (462)
T ss_dssp SS-CCSCEEEECSCCBTTBCSCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCS
T ss_pred CC-CCCCEEEECCCCCCCCceEEEEEeEchhHHHHHHHHhCCCCccCCCCcEEEEEecccCCCCCCcceEEEEEEcCCCC
Confidence 55 57999999999 999999999999999999999999753 23578999999999995 688999999999999999
Q ss_pred ccCCceEEEeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhc
Q psy9409 77 YTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLS 156 (472)
Q Consensus 77 ~tged~~E~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~ 156 (472)
|||||++|||||||++|+++||+.|++. |+|+|+|||||+|||+||||||+||||+.|||+|+|+.+++.|++|++
T Consensus 83 ~TgEd~~E~~~HGg~~v~~~~l~~~~~~----g~r~A~pGEFt~RAflngk~dL~qaEav~dli~a~t~~~~~~a~~~l~ 158 (462)
T 3geh_A 83 YTREDVVEFHCHGGIIAVQQVLQLCLES----GARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQ 158 (462)
T ss_dssp SSSSCEEEEEECCSSSHHHHHHHHHHHT----TCEECCTTHHHHHHHHTTSCCHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred CcCCceEEEECCCCHHHHHHHHHHHHHC----CCeecCCchhhhhHHhcCCcCHHHHHHHHHHHhCCCHHHHHHHHHHhc
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCc
Q psy9409 157 GKFSKLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVG 236 (472)
Q Consensus 157 g~l~~~~~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvG 236 (472)
|.+++.+..||++++++++++|+.|||+| +++ +.+...+..++..+.++++.++.....++..+++++|+++|+||||
T Consensus 159 g~~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvG 236 (462)
T 3geh_A 159 GKLAHPIRQLRANCLDILAEIEARIDFEE-DLP-PLDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVG 236 (462)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTSSS-SSC-CCCTTTHHHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccc-cCC-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999 677 6778889999999999999999988888889999999999999999
Q ss_pred hhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEE
Q psy9409 237 KSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIY 316 (472)
Q Consensus 237 KSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~ 316 (472)
||||+|+|++.+++++++.++||+|.....+.++|.++.+|||||++++ .+.++..++.++..++..+|++|+
T Consensus 237 KSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~-------~~~ve~~gi~~~~~~~~~aD~vl~ 309 (462)
T 3geh_A 237 KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET-------SDQVEKIGVERSRQAANTADLVLL 309 (462)
T ss_dssp HHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------------CCCCSCSEEEE
T ss_pred HHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc-------hhHHHHHHHHHHhhhhhcCCEEEE
Confidence 9999999999988888999999999998899999999999999999988 888898888999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCccc--ccc-cCCCceEEEEeccCccHHHHHHHHHHHhhccC-
Q psy9409 317 VQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN--INY-KNNIANIYLSASKRIGINLLRNTLLDLIEKTQ- 392 (472)
Q Consensus 317 v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~~--~~~-~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~- 392 (472)
|+|++++.+ .....+++.+ ...|+++|+||+|+...... ..+ ....+++++||++|.|+++|++.|.+.+....
T Consensus 310 VvD~s~~~~-~~~~~i~~~l-~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~~ 387 (462)
T 3geh_A 310 TIDAATGWT-TGDQEIYEQV-KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKV 387 (462)
T ss_dssp EEETTTCSC-HHHHHHHHHH-TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSSS
T ss_pred EeccCCCCC-HHHHHHHHhc-cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 999998743 3334555555 34799999999999765431 111 13568999999999999999999999986443
Q ss_pred -CCCCCcccccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCCC
Q psy9409 393 -TIESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIG 471 (472)
Q Consensus 393 -~~~~~~~~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCiG 471 (472)
..+ ..+.++.||.+++++|.++|+.++..+..+ .+.|+++++|+.|+++|++|||++++||+||+|||+||||
T Consensus 388 ~~~~-~~~~~~~R~~~~L~~a~~~L~~~~~~l~~~-----~~~dl~a~~Lr~a~~~l~~itg~~~~e~~l~~iFs~FCiG 461 (462)
T 3geh_A 388 QAAD-MDLAINQRQAAALTQAKMSLEQVQATITQQ-----LPLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIG 461 (462)
T ss_dssp SSCC-SSCCCCHHHHHHHHHHHHHHHHHHHHTTTT-----CCGGGTHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTSCTT
T ss_pred CCcc-cceechHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhHhhCCCchHHHHHHHHhhCCCC
Confidence 233 568899999999999999999999887666 6789999999999999999999999999999999999999
Q ss_pred C
Q psy9409 472 K 472 (472)
Q Consensus 472 K 472 (472)
|
T Consensus 462 K 462 (462)
T 3geh_A 462 K 462 (462)
T ss_dssp C
T ss_pred C
Confidence 9
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=100.00 E-value=2.9e-97 Score=777.60 Aligned_cols=444 Identities=36% Similarity=0.598 Sum_probs=399.7
Q ss_pred CCcEEEecCCCCCceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEE
Q psy9409 5 NSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIE 84 (472)
Q Consensus 5 ~~ti~a~~t~~g~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E 84 (472)
.|||||||||+|+|||||||||||+|++|++++|++. ..++||+++|++++| +|++|||++++||+||+||||||++|
T Consensus 33 ~dtI~A~at~~g~~~i~iiRiSG~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~iDe~~v~~~~~p~Sft~Ed~ve 110 (482)
T 1xzp_A 33 MDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTR-SKIVPRKAIHGWIHE-NGEDVDEVVVVFYKSPKSYTGEDMVE 110 (482)
T ss_dssp SCCEEEECSCSSSCSCEEEEEESSSHHHHHHTTEEES-SCCCBTBCEEEEECC-SSCCCCEEEEEEECTTSSSSSSCEEE
T ss_pred CCCEEEEccCCCCceEEEEEcccHHHHHHHHHHhcCC-CCCCCceEEEEEEec-CCeeeeEEEEEEEeCCCcCCCCCEee
Confidence 4999999999999999999999999999999999621 247999999999999 78999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHHHhcCCCCCeeEcCCCCcchhhhhcCCCChhHHHHHHHHHhcCcHHHHHHHHHHhcChhhHHHH
Q psy9409 85 LHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLIN 164 (472)
Q Consensus 85 ~~~hG~~~~~~~~~~~~~~~~~~~g~r~a~~geft~Raf~ngk~dl~qae~~~~li~a~~~~~~~~a~~~l~g~l~~~~~ 164 (472)
||||||+++++++|+.|+.. |+|+|+|||||+|||+||||||+|+|++.|+|+|+|+.+++.|+++++|.+++.+.
T Consensus 111 ~~~hGg~~v~~~~l~~l~~~----g~r~A~~Geft~raf~nGk~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~~ 186 (482)
T 1xzp_A 111 VMCHGGPLVVKKLLDLFLKS----GARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVD 186 (482)
T ss_dssp EEECSCHHHHHHHHHHHHTT----TCEECCTTHHHHHHHHTTSSCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHHH
T ss_pred ecCcCcHHHHHHHHHHHHHc----CCEeCCCCCcCCcCCCcCCcCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhh
Q psy9409 165 ILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244 (472)
Q Consensus 165 ~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L 244 (472)
.|++.|.++++.+|+.+||++| ++ ..+.. +..++..+..+++.+++..+.++..+++++|+|+|.||||||||+|+|
T Consensus 187 ~~r~~l~~~~~~ie~~idf~ee-i~-~~~~~-i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L 263 (482)
T 1xzp_A 187 SLRRELIEVLAEIRVELDYPDE-IE-TNTGE-VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRL 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTT-CC-CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-cc-chHHH-HHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHH
Confidence 9999999999999999999997 66 44555 889999999999999998888888899999999999999999999999
Q ss_pred hCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCC-ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 245 VGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP-DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 245 ~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~-~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
++.++++++++|+||+|.....+.+++.++.+|||||++ ++ .+.++.+++.+++.+++.+|++|+|+|++++
T Consensus 264 ~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~-------~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 336 (482)
T 1xzp_A 264 LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET-------NDLVERLGIERTLQEIEKADIVLFVLDASSP 336 (482)
T ss_dssp HHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC-------CTTCCCCCHHHHHHHHHHCSEEEEEEETTSC
T ss_pred HCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccc-------hhhHHHHHHHHHHHHhhcccEEEEEecCCCC
Confidence 999988899999999999999999999999999999998 77 6677777777888899999999999999987
Q ss_pred CCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--ccccc--CCCceEEEEeccCccHHHHHHHHHHHhhcc-CCCCCCc
Q psy9409 324 KHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NINYK--NNIANIYLSASKRIGINLLRNTLLDLIEKT-QTIESSP 398 (472)
Q Consensus 324 ~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~~~--~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~-~~~~~~~ 398 (472)
.+.+. .++++.+ .++|+++|+||+|+..... .+.+. .+++++++||++|.|+++|++.|.+.+... ...+ ..
T Consensus 337 ~s~~~-~~il~~l-~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~~~~~~-~~ 413 (482)
T 1xzp_A 337 LDEED-RKILERI-KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERGS-DS 413 (482)
T ss_dssp CCHHH-HHHHHHH-TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTHHHHHHHT-TC
T ss_pred CCHHH-HHHHHHh-cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcCCCC-cc
Confidence 55432 3344444 5789999999999975421 12211 236899999999999999999999976421 1122 46
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhcCCCCC
Q psy9409 399 YLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472 (472)
Q Consensus 399 ~~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~FCiGK 472 (472)
++++.||++++++|.++|..++..+..+ .+.++.+++|+.|+++|++|||+.++||+||+||++|||||
T Consensus 414 ~~~~~R~~~~l~~a~~~L~~~~~~l~~~-----~~~~l~a~~lr~a~~~L~~itG~~~~edlL~~IFs~FCiGK 482 (482)
T 1xzp_A 414 LITNLRQKQLLENVKGHLEDAIKSLKEG-----MPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482 (482)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHTTSCTTC
T ss_pred eEhhHHHHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHhcCCCCC
Confidence 8889999999999999999999988777 67899999999999999999999999999999999999999
No 4
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.5e-26 Score=208.20 Aligned_cols=162 Identities=40% Similarity=0.638 Sum_probs=130.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.+.+|+++|++|||||||+|+|.+.....+++.+++|++.....+.+++.++.+|||||+... .+..+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 75 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-------SDEVERIGIE 75 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-------SSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-------hhHHHHHHHH
Confidence 568999999999999999999999887777889999999999999999999999999999876 5555555555
Q ss_pred hhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCCCCCCEEEEEecCCCCcCcccccccCCCceEEEEeccCccHHH
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~~~~piivV~NK~Dl~~~~~~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
+.+.+++.+|++++|+|++++.++. ++..+.+....+.|+++|+||+|+......+....+.+++++||++|.|+++
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHH
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHH
Confidence 5666789999999999999875543 3334444444578999999999996544334444567899999999999999
Q ss_pred HHHHHHHHhhcc
Q psy9409 380 LRNTLLDLIEKT 391 (472)
Q Consensus 380 L~~~l~~~~~~~ 391 (472)
+++.|.+.+...
T Consensus 156 l~~~l~~~~~~~ 167 (172)
T 2gj8_A 156 LRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhhc
Confidence 999999987543
No 5
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.93 E-value=2.4e-25 Score=225.53 Aligned_cols=234 Identities=23% Similarity=0.214 Sum_probs=153.3
Q ss_pred cCcHH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHhhHhcCCC---CCccccccChHHHHHHHHHHHHHHHHHHHhh--
Q psy9409 142 ASTES-AAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFP---EENQELILNKNDFFNELIKIKKKLLKIIQQG-- 215 (472)
Q Consensus 142 a~~~~-~~~~a~~~l~g~l~~~~~~~~~~l~~~~a~~e~~id~~---ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~-- 215 (472)
|+|.. .++.+++|+.+.+.+. ..| ..++..+..++|. +.+++ .+...+..++..+.+++.++.+..
T Consensus 98 a~t~~~~~q~~la~l~~~~~rl-~~~-----~~l~~~~~~i~~~g~ge~~~e--~~~~~~~~~i~~l~~~l~~~~~~r~~ 169 (364)
T 2qtf_A 98 AGSKEAKMQIELARLKYELPII-KET-----YTKSKIGEQQGPLGAGTYGVE--STIKFYKRRINKLMKELESIKIFKEK 169 (364)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH-HHC----------------------------CHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcccchhHHHHHHHHhhhchhh-hhh-----hHHHHhcCCCCcCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777 6689999999988876 666 2345567788886 33444 446778899999999998887643
Q ss_pred hhHHhhhCCCE-EEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchh
Q psy9409 216 KKRALIRNGLN-VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN 294 (472)
Q Consensus 216 ~~~~~~~~~~~-V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~ 294 (472)
.++.+.+++++ |+++|++|||||||+|+|++... .+++.+++|+|.....+.++|.++.+|||||+... .|.+
T Consensus 170 ~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~-----lp~~ 243 (364)
T 2qtf_A 170 SIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG-----IPPQ 243 (364)
T ss_dssp ---------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS-----CCGG
T ss_pred HHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhc-----CCHH
Confidence 33345566777 99999999999999999999886 56889999999999999999999999999997542 2355
Q ss_pred HHHHHhHHhhhcccccccEEEEEEeCCCCC--Cch---HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-c-------c-c
Q psy9409 295 EVEKIGIERTWVELKNSDIIIYVQDARYDK--HTD---FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-N-------I-N 359 (472)
Q Consensus 295 ~~e~~~i~~~~~~~~~aD~il~v~D~s~~~--~~~---~~~~il~~l~-~~~piivV~NK~Dl~~~~~-~-------~-~ 359 (472)
.++. +..+...+..+|++++|+|++++. ... .+..+++.+. .+.|+++|+||+|+.+... . + .
T Consensus 244 lve~--f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~ 321 (364)
T 2qtf_A 244 IVDA--FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSK 321 (364)
T ss_dssp GHHH--HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 5565 455667789999999999998864 222 2445555543 5789999999999976431 1 1 1
Q ss_pred cc--CCCceEEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 360 YK--NNIANIYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 360 ~~--~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
.. .+++++++||++|.|+++|++.|.+.+...
T Consensus 322 ~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 322 ELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11 134689999999999999999999988544
No 6
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.90 E-value=2.3e-24 Score=217.46 Aligned_cols=214 Identities=13% Similarity=0.061 Sum_probs=148.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC------CCcceecccCc-------------------------------------ee
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAG-------------------------------------TT 259 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~g-------------------------------------tt 259 (472)
.+..|+|+|+||||||||+|+|++ ....++...|+ +|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 467899999999999999999985 22333333222 22
Q ss_pred eeEEEEE--EEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC
Q psy9409 260 RDKITKT--IQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP 337 (472)
Q Consensus 260 ~d~~~~~--~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~ 337 (472)
++..... +...+.++.|+||||+... ... ....+|++++|+|++.+..... +...+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~-------~~~-----------l~~~~d~vl~V~d~~~~~~~~~---i~~~i- 210 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS-------EFA-----------VADMVDMFVLLLPPAGGDELQG---IKRGI- 210 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C-------HHH-----------HHTTCSEEEEEECCC----------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh-------hhh-----------HHhhCCEEEEEEcCCcchhHHH---hHHHH-
Confidence 2111110 1236788999999998754 211 2457999999999987532211 11111
Q ss_pred CCCCEEEEEecCCCCcCcc------cccc----------cCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccc
Q psy9409 338 MNIPVIYVWNKIDYSGHQK------NINY----------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401 (472)
Q Consensus 338 ~~~piivV~NK~Dl~~~~~------~~~~----------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~ 401 (472)
...|.++|+||+|+.+... .+.. ...++++++||++|.|+++|+++|.+.+.... . ..++.
T Consensus 211 l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~~~--~-~~~~~ 287 (349)
T 2www_A 211 IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLML--A-SGELT 287 (349)
T ss_dssp CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHHHH--H-HSHHH
T ss_pred HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHHHh--h-CchHH
Confidence 3468899999999975321 1110 12457899999999999999999999875321 1 34677
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HhhcccccCCchhHHHHHHHHHHHHHhchhCCCCchhHHHHHhhc
Q psy9409 402 RERHIHSLNEANYYLSCAIKI-INQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQ 467 (472)
Q Consensus 402 ~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~el~~~el~~a~~~l~~i~g~~~~e~iLd~iF~~ 467 (472)
..||.+.+..+.+.+.+.+.. +.+. .+.+...++|+.++. +|+++|....|++|+.||++
T Consensus 288 ~~R~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~ 348 (349)
T 2www_A 288 AKRRKQQKVWMWNLIQESVLEHFRTH-----PTVREQIPLLEQKVL-IGALSPGLAADFLLKAFKSR 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-----cchhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcC
Confidence 889999999999999998876 5444 567889999999999 99999999999999999986
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=7.5e-23 Score=202.96 Aligned_cols=161 Identities=29% Similarity=0.388 Sum_probs=128.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-CeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-KFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
-.|+++|.||||||||+|+|++..++++++.+++|++........+ +.++.||||||+.+.. ............
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~-----~~~~l~~~~~~~ 85 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK-----KSDVLGHSMVEI 85 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC-----TTCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc-----cchhHHHHHHHH
Confidence 4699999999999999999999999989999999999999988898 9999999999998761 013344444555
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCC-cCcc------cccccCC--CceEEEEecc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYS-GHQK------NINYKNN--IANIYLSASK 373 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~-~~~~------~~~~~~~--~~~i~vSA~~ 373 (472)
+..++..+|++++|+|++++.+......+++.+. .+.|+++|+||+|+. +... .+.+..+ .+++++||++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6678889999999999998755443332244443 478999999999997 3332 2333333 6799999999
Q ss_pred CccHHHHHHHHHHHhhc
Q psy9409 374 RIGINLLRNTLLDLIEK 390 (472)
Q Consensus 374 g~gi~~L~~~l~~~~~~ 390 (472)
|.|++++++.|.+.+..
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999999854
No 8
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=2.7e-23 Score=195.70 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=113.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+|+|.+|||||||+++++...+.. ...|+...+.....+..++ +.+.||||||+..+ ..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~-------~~------- 77 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF-------RS------- 77 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTC-------GG-------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCC-CcCCccceEEEEEEEEecceEEEEEEEECCCchhh-------hh-------
Confidence 4899999999999999999999887742 4455556677777777766 46789999999887 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++++|+|++++.+++ |+..+.+....+.|+++|+||+|+...+. .+++..+++++++|
T Consensus 78 -l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S 156 (216)
T 4dkx_A 78 -LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 156 (216)
T ss_dssp -GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred -HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence 2345788999999999999986665 44444444457899999999999976543 34556688999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.||+++|+.|.+.+.
T Consensus 157 Aktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998874
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2.1e-22 Score=199.03 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=125.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+++|+||||||||+|+|++..++++++.|+||++.....+..++.++.||||||+.+. .+.++......+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~-------~~~l~~~~~~~~ 80 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP-------MDALGEFMDQEV 80 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC-------CSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch-------hhHHHHHHHHHH
Confidence 3699999999999999999999999888999999999888888888999999999999876 555555555667
Q ss_pred hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc-c---cccc-CCCceEEEEeccCccH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-N---INYK-NNIANIYLSASKRIGI 377 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~-~---~~~~-~~~~~i~vSA~~g~gi 377 (472)
..+++.+|++++|+|++++.... ++...++....+.|+++|+||+|+..... . .... ...+++++||++|.|+
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQV 160 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCH
Confidence 78899999999999999863322 22222222223789999999999976533 1 1111 2246899999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
+++++.|.+.+.
T Consensus 161 ~~l~~~l~~~l~ 172 (301)
T 1wf3_A 161 AELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 999999999874
No 10
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.88 E-value=2.4e-22 Score=219.59 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCCCCccccccChHHHHHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHH
Q psy9409 161 KLINILLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240 (472)
Q Consensus 161 ~~~~~~~~~l~~~~a~~e~~id~~ee~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL 240 (472)
+.+..||+.+.+.++.+|+.+||++++.+.......+...+..+...+..+ .+++++|+|+|.+|+|||||
T Consensus 15 ~~~~~~r~~L~~~l~~le~~ld~~e~~~~~~~~~~~l~~~l~~L~~~~~~l---------~~~~~~V~VvG~~naGKSSL 85 (695)
T 2j69_A 15 ERVAQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNL---------QQGVFRLLVLGDMKRGKSTF 85 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCCCHHHHHHHHHHHHHH---------HHCCEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHHHh---------ccCCCEEEEECCCCCCHHHH
Confidence 357889999999999999999998865410233344555566666555443 45679999999999999999
Q ss_pred HHhhhCCCcceecccCce--------------eeeEE---------------------------------------EEEE
Q psy9409 241 FNSLVGSDVAIVTSIAGT--------------TRDKI---------------------------------------TKTI 267 (472)
Q Consensus 241 in~L~~~~~~~v~~~~gt--------------t~d~~---------------------------------------~~~~ 267 (472)
+|+|++.++.+++..|+| |++.. ...+
T Consensus 86 lNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i 165 (695)
T 2j69_A 86 LNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVV 165 (695)
T ss_dssp HHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEE
T ss_pred HHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEE
Confidence 999999998888888887 33210 0011
Q ss_pred EeCC----eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCE
Q psy9409 268 QINK----FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPV 342 (472)
Q Consensus 268 ~~~~----~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~pi 342 (472)
.+.. .++.||||||+.+. .. ....+..++..+|++|+|+|++++.+......+.+.+. .+.|+
T Consensus 166 ~~p~~~l~~~l~LiDTPGl~~~-------~~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~i 233 (695)
T 2j69_A 166 EYPLTLLQKGIEIVDSPGLNDT-------EA-----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTV 233 (695)
T ss_dssp EECCHHHHTTEEEEECCCHHHH-------HT-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCE
T ss_pred EccchhccCCeEEEECCCCCch-------hh-----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCE
Confidence 1111 46999999998865 22 13346678889999999999998755444333433443 46789
Q ss_pred EEEEecCCCCcCc---c-------------------ccccc--------CCCceEEEEec--------------cCccHH
Q psy9409 343 IYVWNKIDYSGHQ---K-------------------NINYK--------NNIANIYLSAS--------------KRIGIN 378 (472)
Q Consensus 343 ivV~NK~Dl~~~~---~-------------------~~~~~--------~~~~~i~vSA~--------------~g~gi~ 378 (472)
++|+||+|+.... . .+... ...++++|||+ +|.|++
T Consensus 234 iiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~ 313 (695)
T 2j69_A 234 FFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFP 313 (695)
T ss_dssp EEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHH
T ss_pred EEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHH
Confidence 9999999997543 0 01111 12469999999 999999
Q ss_pred HHHHHHHHHhh
Q psy9409 379 LLRNTLLDLIE 389 (472)
Q Consensus 379 ~L~~~l~~~~~ 389 (472)
++++.|.+.+.
T Consensus 314 ~L~~~L~~~l~ 324 (695)
T 2j69_A 314 KFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=183.55 Aligned_cols=151 Identities=22% Similarity=0.208 Sum_probs=117.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~------- 72 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF-------R------- 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC-------S-------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh-------h-------
Confidence 4479999999999999999999998876 36677888888888888888 67899999997765 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....++..+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+....+++++++|
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 12445678999999999999875554333232222 35789999999999876542 23334578999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 152 AKENVNVEEMFNCITELVL 170 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 12
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=8.1e-23 Score=190.29 Aligned_cols=165 Identities=23% Similarity=0.195 Sum_probs=116.3
Q ss_pred HHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccc
Q psy9409 209 LKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDIN 286 (472)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~ 286 (472)
+.+......+......++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 82 (213)
T 3cph_A 5 RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF- 82 (213)
T ss_dssp ---------------CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG-
T ss_pred hhhhcccCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH-
Confidence 3334444444455667899999999999999999999877642 5667777787777888887 67999999998765
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc------
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------ 356 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~------ 356 (472)
.. ....++..+|++++|+|++++.++. ++..+......+.|+++|+||+|+.....
T Consensus 83 ------~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 148 (213)
T 3cph_A 83 ------RT--------ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGE 148 (213)
T ss_dssp ------TC--------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHH
T ss_pred ------HH--------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHH
Confidence 11 2344678899999999999864433 22333333345789999999999943321
Q ss_pred cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+....+++++++||++|.|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 149 ALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233345779999999999999999999998874
No 13
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=1.3e-22 Score=197.48 Aligned_cols=156 Identities=24% Similarity=0.323 Sum_probs=120.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|++|||||||+|+|++... .+++.|++|.+.....+.+++..+.+|||||+..+ ........+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~-------~~~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL-------TAHSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCC-------CSSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccc-------ccCCHHHHHHH
Confidence 36899999999999999999999987 57899999999999999999999999999999876 11111111222
Q ss_pred hhcccccccEEEEEEeCCCCCCch-HHHHHHHhCCCC-CCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCc
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTD-FDKKIIKNFPMN-IPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRI 375 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l~~~-~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~ 375 (472)
.+....++|++++|+|+++..... ++..+. ..+ .|+++|+||+|+..... .+.+..+++++++||++|.
T Consensus 75 ~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 75 NFILDGNADVIVDIVDSTCLMRNLFLTLELF---EMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp HHHHTTCCSEEEEEEEGGGHHHHHHHHHHHH---HTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTB
T ss_pred HhhhccCCcEEEEEecCCcchhhHHHHHHHH---hcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 333347899999999999852222 222222 234 99999999999865332 3455668899999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy9409 376 GINLLRNTLLDLIEK 390 (472)
Q Consensus 376 gi~~L~~~l~~~~~~ 390 (472)
|++++++.+.+.+..
T Consensus 152 gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 152 GVEELKRMIALMAEG 166 (271)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999998754
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=1.3e-22 Score=180.99 Aligned_cols=148 Identities=20% Similarity=0.168 Sum_probs=96.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|.+.....+.+.++++.+ ..+.+++ ..+.+|||||...+ ..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~-------~~------- 64 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGG-------RW------- 64 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccc-------hh-------
Confidence 47999999999999999999999887766777777764 3344444 46889999998765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++. ++..+.+.. ..+.|+++|+||+|+.+... .+....+++++++
T Consensus 65 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 65 -LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEe
Confidence 2334678999999999999875544 233333322 25789999999999976543 2334567899999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 15
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=2.5e-22 Score=178.09 Aligned_cols=153 Identities=27% Similarity=0.375 Sum_probs=109.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+||+++|++|+|||||+|+|.+.....+.+.+++|.+.....+..++..+.+|||||.... .+ .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~-~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG-------DK-WEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS-------SS-CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc-------cc-hHHHHHHHH
Confidence 4899999999999999999999887667888999999988889999999999999998874 11 111112234
Q ss_pred hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCccc---ccccCCC-ceEEEEeccCccHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQKN---INYKNNI-ANIYLSASKRIGIN 378 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~~---~~~~~~~-~~i~vSA~~g~gi~ 378 (472)
...++.+|++++|+|++++.+.. ++..++.. .+.|+++|+||+|+.+.... +. ..+. +++++||++|.|++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccCCChH
Confidence 45778999999999999863322 33333333 47899999999999876432 23 3345 79999999999999
Q ss_pred HHHHHHHHHh
Q psy9409 379 LLRNTLLDLI 388 (472)
Q Consensus 379 ~L~~~l~~~~ 388 (472)
+++++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998865
No 16
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=2.5e-22 Score=194.21 Aligned_cols=156 Identities=24% Similarity=0.355 Sum_probs=120.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|++|||||||+|+|++..+. ++++||+|.+.....+..++..+.+|||||+..+.. ....+. +.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~~~e~--v~~ 76 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY-----SSIDEK--IAR 76 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS-----SSHHHH--HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC-----CCHHHH--HHH
Confidence 478999999999999999999998875 689999999999999999999999999999987611 111111 212
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.+.....+|++++|+|+++......|...+. ..+.|+++|+||+|+..... .+.+..++|++++||++|.|+
T Consensus 77 ~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 77 DYLLKGDADLVILVADSVNPEQSLYLLLEIL--EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp HHHHHSCCSEEEEEEETTSCHHHHHHHHHHH--TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTH
T ss_pred HHHhhcCCCEEEEEeCCCchhhHHHHHHHHH--hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCH
Confidence 2222268999999999998643322222222 35799999999999865432 244556889999999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
+++++.+.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
No 17
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=5.7e-22 Score=177.53 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=113.7
Q ss_pred hhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 220 LIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 220 ~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
.++..++|+++|++|||||||+|+|.+..+. ...| |.+.....+.+++..+.+|||||...+ .
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~------ 65 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGLTSI-------R------ 65 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETTEEEEEEEECCCGGG-------G------
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECCEEEEEEECCCChhh-------h------
Confidence 3556789999999999999999999987764 2233 233445667778999999999998766 1
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-C----CCCCEEEEEecCCCCcCcc--cc--------cccCCC
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P----MNIPVIYVWNKIDYSGHQK--NI--------NYKNNI 364 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~----~~~piivV~NK~Dl~~~~~--~~--------~~~~~~ 364 (472)
.....+++.+|++++|+|++++.++.....++..+ . .+.|+++|+||+|+.+... .+ ....++
T Consensus 66 --~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 66 --PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKW 143 (171)
T ss_dssp --GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCE
T ss_pred --HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCce
Confidence 22445778999999999999987665333333221 1 5789999999999986532 11 122355
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++++||++|.|+++++++|.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 7999999999999999999998874
No 18
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=8.2e-23 Score=183.36 Aligned_cols=154 Identities=25% Similarity=0.396 Sum_probs=109.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
++|+++|++|||||||+|+|.+..+. +++.|++|.+.....+.+++..+.+|||||+..+. +....+. +...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~--~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-----ANSIDEI--IARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSS-----SSSHHHH--HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCC-----CcchhHH--HHHH
Confidence 68999999999999999999997754 47788888888888888889999999999988761 0111111 2112
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
......+|++++|+|+++......|...+.. .+.|+++|+||+|+..... .+.+..+++++++||++|.|++
T Consensus 76 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATALERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHHHHCCSEEEEEEETTCHHHHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred HHhcCCCCEEEEEecCCchhHhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 1112479999999999874322222222222 4789999999999864321 2344457899999999999999
Q ss_pred HHHHHHHHHh
Q psy9409 379 LLRNTLLDLI 388 (472)
Q Consensus 379 ~L~~~l~~~~ 388 (472)
++++.|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=183.34 Aligned_cols=152 Identities=22% Similarity=0.204 Sum_probs=119.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 80 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RT------ 80 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-------CT------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhh-------hh------
Confidence 34799999999999999999999887653 5667778888888888887 57899999998766 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++. ++..+......+.|+++|+||+|+..... .+....+++++++
T Consensus 81 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 81 --ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp --THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred --hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 2334678899999999999875443 22333333346789999999999976543 2344567899999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|+++++++|.+.+..
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998853
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.7e-22 Score=180.48 Aligned_cols=152 Identities=16% Similarity=0.239 Sum_probs=114.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+......++++.+.....+.+++. .+.+|||||...+ .
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~------- 74 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF-------R------- 74 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH-------H-------
Confidence 45799999999999999999999988754456677777777777777764 7899999998766 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
.....+++.+|++++|+|++++.++. +...+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 75 -~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
T 2g6b_A 75 -SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMET 153 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred -HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 22455788999999999999875443 22333333346789999999999986432 2333457799999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 21
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=3.2e-22 Score=180.59 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=116.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|++|||||||+|+|++..+.. ...+++|.+.....+.+++..+.+|||||+..+ .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAF-------T-------- 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSS-------S--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHH-------H--------
Confidence 456899999999999999999999988753 566777777777778889999999999998876 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-c----c------cccCC--CceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-N----I------NYKNN--IANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-~----~------~~~~~--~~~i 367 (472)
......+..+|++++|+|++++.... +...++.+ ..+.|+++|+||+|+..... . + ....+ ++++
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQ-TVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHH-HHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEE
Confidence 12345678899999999998864333 33333333 35789999999999986431 1 1 11122 5799
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|+++++++|.+.+..
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHhhhh
Confidence 99999999999999999988753
No 22
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=1.2e-22 Score=196.22 Aligned_cols=157 Identities=29% Similarity=0.396 Sum_probs=118.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+++|++|||||||+|+|++... .++++||+|.+.....+.+++..+.+|||||+....+.. ......+. +.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~-~~~~~~e~--i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA-EGISQDEQ--IAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-------CHHHH--HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc-cCCCHHHH--HHHH
Confidence 4799999999999999999999875 468999999999999999999999999999998761100 00011121 2222
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGIN 378 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~ 378 (472)
......+|++|+|+|+++......+...+ ...+.|+++|+||+|+..... .+.+..++|++++||++|.|++
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~l--~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLYLTSQL--FELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIP 155 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHHHHHHH--TTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHH
T ss_pred HHhhCCCCEEEEEeeCCCchhHHHHHHHH--HHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 22237899999999999853322222222 235799999999999875542 2445568899999999999999
Q ss_pred HHHHHHHHH
Q psy9409 379 LLRNTLLDL 387 (472)
Q Consensus 379 ~L~~~l~~~ 387 (472)
++++.|.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999887
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.87 E-value=1.4e-22 Score=197.67 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=122.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|++|||||||+|+|++... .++++||+|.+.....+.+.+.++.+|||||+.++.+.. ......+. +.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~e~--i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTIS-SQTSLDEQ--IAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-----CCHHHH--HHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccccc-ccCCHHHH--HHH
Confidence 47999999999999999999999985 679999999999999999999999999999998861100 00111111 333
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.+.....+|++++|+|+++......+...+.. .+.|+++|+||+|+..... .+.+..++|++++||++|.|+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi 156 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGI 156 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHH
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 34445799999999999975332223222222 3789999999999875432 234456789999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy9409 378 NLLRNTLLDLIEK 390 (472)
Q Consensus 378 ~~L~~~l~~~~~~ 390 (472)
+++++.|.+.+..
T Consensus 157 ~el~~~i~~~~~~ 169 (274)
T 3i8s_A 157 EALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887753
No 24
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=1.8e-22 Score=183.41 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=92.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|.+..+. ....|+++.+.....+.+++ ..+.+|||||...+ .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------~ 71 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------------R 71 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh---------------h
Confidence 479999999999999999999987664 25566777777777788877 67999999998765 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++++|+|++++.++... ..+......+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 2245578899999999999987554432 233333345789999999999976432 23334578999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 152 a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIK 170 (183)
T ss_dssp C---CCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998874
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=6.8e-22 Score=179.85 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=116.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------R-------- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------H--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------H--------
Confidence 4799999999999999999999887653 4556667777777777777 57899999998776 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++++|+|++++.++. ++..+......+.|+++|+||+|+..... .+....+++++++|
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 22455788999999999999875543 22233333346889999999999965432 23344678899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 154 a~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998874
No 26
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=182.06 Aligned_cols=151 Identities=18% Similarity=0.183 Sum_probs=102.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|.+..+..+.+.++++. ....+.+++. .+.+|||||.... .. .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~-------~~------~ 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKL-------DK------S 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC--------------------C
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCcc-------ch------h
Confidence 4799999999999999999999998776555555544 3445566664 6889999997653 10 0
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHH---HHhC--CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKNF--PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
.....+++.+|++++|+|++++.++.....+ +... ..+.|+++|+||+|+.+... .+....+++++++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIET 148 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEEC
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEE
Confidence 1123467789999999999987554422222 2222 24789999999999976432 1233456789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 149 Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 149 SATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=4.7e-22 Score=176.79 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=111.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+. .....++.+.....+.+++. .+.+|||||...+ ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~------ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASM------ 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHH------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHH------
Confidence 479999999999999999999987764 33444554555666677765 4899999998876 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...+++.+|++++|+|++++.+.. ++..+.+... .+.|+++|+||+|+..... .+.+..+++++++
T Consensus 68 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 68 --RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEE
T ss_pred --HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEe
Confidence 233567899999999999875433 3344444443 5799999999999975432 1233457799999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 146 Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 146 SAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=3.8e-22 Score=178.29 Aligned_cols=151 Identities=26% Similarity=0.226 Sum_probs=110.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~------- 67 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF-------RT------- 67 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGT-------SC-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh-------hh-------
Confidence 3799999999999999999999887642 5566677777777777776 47899999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEe
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSA 371 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA 371 (472)
....+++.+|++++|+|++++.++. ++..+.+....+.|+++|+||+|+..... .+.+..+++++++||
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (170)
T 1g16_A 68 -ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 146 (170)
T ss_dssp -CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEEC
Confidence 1334678899999999999874433 23333333346889999999999954322 233345789999999
Q ss_pred ccCccHHHHHHHHHHHhhc
Q psy9409 372 SKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~~ 390 (472)
++|.|++++++.|.+.+..
T Consensus 147 ~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 147 KNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988743
No 29
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.6e-22 Score=210.17 Aligned_cols=163 Identities=29% Similarity=0.414 Sum_probs=118.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|+||||||||+|+|++.++..+++.+|||+|.....+.+++..+.||||||++... ...+.++.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~----~~~~~~e~~~~~ 249 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG----KVYETTEKYSVL 249 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBT----TBCCCCSHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCc----cccchHHHHHHH
Confidence 4579999999999999999999999988889999999999988999999999999999997641 111223333333
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------------cccccCCCceEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------------NINYKNNIANIYL 369 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------------~~~~~~~~~~i~v 369 (472)
++..+++.+|++++|+|++++.+.+. ..++..+ ..+.|+++|+||+|+.+... .+....+.+++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 45567888999999999999755442 2233322 25789999999999976432 1122346789999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|++++++.+.+.+..
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=1.6e-22 Score=182.47 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=113.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC---eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK---FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
..++|+++|++|||||||+|+|.+..+.. ...|+++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~----- 71 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIG-------GK----- 71 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTT-------CT-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccc-------cc-----
Confidence 34799999999999999999999887642 3345555677777888876 78999999998776 22
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC-C--CCCC-EEEEEecCCCCcCcc-------cccccCCCc
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF-P--MNIP-VIYVWNKIDYSGHQK-------NINYKNNIA 365 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l-~--~~~p-iivV~NK~Dl~~~~~-------~~~~~~~~~ 365 (472)
....+++.+|++++|+|++++.++.. |...+... . ...| +++|+||+|+..... .+.+..+++
T Consensus 72 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2hxs_A 72 ---MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS 148 (178)
T ss_dssp ---THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE
T ss_pred ---hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCc
Confidence 23346788999999999998755432 22222221 1 2455 899999999976332 233345789
Q ss_pred eEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++++||++|.|+++++++|.+.+..
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 149 SHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998743
No 31
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=6.5e-22 Score=176.10 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=108.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+||+++|++|||||||+|+|++..+. ...| |.+.....+..++..+.+|||||+..+ .. ..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~--------~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RP--------LW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HH--------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HH--------HH
Confidence 58999999999999999999987764 2333 333444566778899999999998766 22 23
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--cc--------cccCCCceEEE
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NI--------NYKNNIANIYL 369 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~--------~~~~~~~~i~v 369 (472)
..+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+ ....+++++++
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQAT 141 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEc
Confidence 34678999999999999876655333333322 14789999999999976532 11 11234579999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 142 Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 142 CATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp BTTTTBTHHHHHHHHHHHC-
T ss_pred ccCCCcCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=7.7e-22 Score=178.87 Aligned_cols=150 Identities=23% Similarity=0.204 Sum_probs=113.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+. ..+++|+.+.....+.+++ ..+.+|||||+..+ .
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 68 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY-------S-------- 68 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT-------C--------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhh-------h--------
Confidence 479999999999999999999976653 4555566555566777777 56799999998876 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
.....+++.+|++++|+|++++.+++ ++..+.+... .+.|+++|+||+|+..... .+.+..+++++++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 12345678899999999999875544 3334444443 5789999999999965432 2444567899999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|++++++.|.+.+..
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998853
No 33
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=9.9e-22 Score=182.67 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=116.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------------- 88 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------------- 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH---------------
Confidence 34799999999999999999999887642 4556666777777788877 47899999998766
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch---HH-HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD---FD-KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~---~~-~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
......+++.+|++++|+|++++.++. .| ..+......+.|+++|+||+|+..... .+....+++++++
T Consensus 89 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 89 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 222456788999999999999875543 23 233333346789999999999975432 2333457889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 169 Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 169 SAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998874
No 34
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.86 E-value=1.7e-21 Score=177.55 Aligned_cols=148 Identities=23% Similarity=0.275 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|.+..+..+.+..|.+ ...+.+++..+.+|||||...+ ..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 75 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGQRKI-------RP-------- 75 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE----EEEEEETTEEEEEEECSSCGGG-------HH--------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE----EEEEEECCEEEEEEECCCCHHH-------HH--------
Confidence 4689999999999999999999998776555555533 3456677899999999998776 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh-C----CCCCCEEEEEecCCCCcCcc--ccc--------ccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-F----PMNIPVIYVWNKIDYSGHQK--NIN--------YKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~-l----~~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~i 367 (472)
....+++.+|++++|+|++++.++.....++.. + ..+.|+++|+||+|+..... .+. ...+++++
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ 155 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEE
Confidence 233467889999999999987665533333322 1 15789999999999976532 111 12345799
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC-
T ss_pred EccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 35
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=1.5e-21 Score=177.58 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|.+|||||||+|+|++..+..+.+..+.+. ..+.+++..+.+|||||...+ .
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~-------~-------- 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESL-------R-------- 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGG-------T--------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhH-------H--------
Confidence 456899999999999999999999998855555555433 455668899999999998766 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--ccc--------ccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NIN--------YKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~ 366 (472)
.....+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+. ...++++
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE
Confidence 12345778999999999999986665333322221 25789999999999976421 111 1234579
Q ss_pred EEEEeccCccHHHHHHHHHHH
Q psy9409 367 IYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~ 387 (472)
+++||++|.|+++++++|.+.
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 999999999999999998764
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.86 E-value=9.7e-22 Score=175.86 Aligned_cols=150 Identities=20% Similarity=0.191 Sum_probs=104.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
+||+++|++|||||||+|+|.+..... ...+.++.+.....+.+++ ..+.+|||||...+ ....
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~------ 68 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA-------GGWL------ 68 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCcccc-------chhh------
Confidence 689999999999999999999877654 3344556777777777776 46789999998765 2211
Q ss_pred hhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
...+++.+|++++|+|++++.++. ++..+.+... .+.|+++|+||+|+.+... .+.+..+++++++|
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T 3q85_A 69 -QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 147 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred -hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEec
Confidence 122456799999999999875444 3444444433 4799999999999975432 23445678999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 148 a~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 37
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.86 E-value=1.3e-21 Score=185.14 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|++..+. +++.+++|++.....+..++..+.+|||||+.+... .....++...+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~- 102 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF---ENRNTIEMTTI- 102 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCG---GGCCHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCccc---chhhhHHHHHH-
Confidence 4579999999999999999999999876 578889999988888888899999999999965300 00111111111
Q ss_pred hhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCC---CCCCEEEEEecCCCCcCcc----------cccccCC--Cc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFP---MNIPVIYVWNKIDYSGHQK----------NINYKNN--IA 365 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~---~~~piivV~NK~Dl~~~~~----------~~~~~~~--~~ 365 (472)
...+..+|++|+|+|++++.++. .+..++..+. .+.|+++|+||+|+..... .+....+ ++
T Consensus 103 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 103 --TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp --HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred --HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 12357789999999999876543 2334444332 3789999999999976432 1222334 68
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|++++++.|.+.+.
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 38
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.86 E-value=6.7e-22 Score=178.24 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=114.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~------- 78 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RS------- 78 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------GG-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH-------HH-------
Confidence 3799999999999999999999877653 4566777778777888877 47899999998766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....++..+|++++|+|++++.++. +...+......+.|+++|+||+|+..... .+....+++++++|
T Consensus 79 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (179)
T 2y8e_A 79 -LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS 157 (179)
T ss_dssp -GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred -HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 2334567899999999999864443 22333333346789999999999975432 12234467899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|++++++.|.+.+.
T Consensus 158 a~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988763
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=6.8e-22 Score=181.69 Aligned_cols=154 Identities=23% Similarity=0.169 Sum_probs=112.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc-eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA-IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~-~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
...+||+++|++|||||||+|+|++..+. .+.+.++++.......+...+..+.+|||||...+ ..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF-------HS------ 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG-------GG------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh-------Hh------
Confidence 34589999999999999999999988753 33455555554433333334568999999998766 21
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHH----HhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKII----KNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il----~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++.....++ +....+.|+++|+||+|+.+... .+.+..+++++++
T Consensus 88 --~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 165 (192)
T 2fg5_A 88 --LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVET 165 (192)
T ss_dssp --GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEEC
T ss_pred --hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 2334678899999999999875544333332 22235789999999999975322 2334467889999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|++++++.|.+.+..
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 166 SAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999998743
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.4e-21 Score=176.99 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=109.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|++|||||||+|+|.+..+..+.+..+ .....+.+++..+.+|||||...+ ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------- 75 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESL-------RS------- 75 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC-----------CG-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhH-------HH-------
Confidence 456899999999999999999999887653333333 223456678899999999998766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--cc--------cccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NI--------NYKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~--------~~~~~~~~ 366 (472)
....+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+ ....++++
T Consensus 76 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 154 (187)
T 1zj6_A 76 -SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 154 (187)
T ss_dssp -GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred -HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEE
Confidence 1334678899999999999987665333333222 25789999999999976422 11 11235689
Q ss_pred EEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
+++||++|.|+++++++|.+.+...
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988543
No 41
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=1.9e-21 Score=178.88 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=110.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|.+|||||||+|+|++..+..+...+. .......+...+..+.+|||||+..+ . .
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~--------~ 78 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITAT--VGYNVETFEKGRVAFTVFDMGGAKKF-------R--------G 78 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCC--SSEEEEEEEETTEEEEEEEECCSGGG-------G--------G
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccc--cceeEEEEEeCCEEEEEEECCCCHhH-------H--------H
Confidence 45799999999999999999999998765322222 22334456778899999999998876 2 2
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-C-----------CCCCEEEEEecCCCCcCcc--cc------c---
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P-----------MNIPVIYVWNKIDYSGHQK--NI------N--- 359 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~-----------~~~piivV~NK~Dl~~~~~--~~------~--- 359 (472)
....+++.+|++|+|+|++++.++.....++..+ . .+.|+++|+||+|+..... .+ .
T Consensus 79 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 79 LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 2445788999999999999986655332322221 1 2789999999999987632 11 1
Q ss_pred ccCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 360 YKNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 360 ~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+..+++++++||++|.|++++++.|.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 2356789999999999999999999998853
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=7.7e-22 Score=176.50 Aligned_cols=151 Identities=24% Similarity=0.192 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 68 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF--------------- 68 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh---------------
Confidence 34799999999999999999999877642 4456666666666677765 46889999997765
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
......+++.+|++++|+|++++.++.....++.. ...+.|+++|+||+|+.+... .+.+..+.+++++
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z08_A 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHT 148 (170)
T ss_dssp ----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 11234578899999999999987554433322222 235789999999999976432 2334457889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=6.9e-22 Score=176.60 Aligned_cols=149 Identities=26% Similarity=0.243 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcce-ecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAI-VTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~-v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.++|+++|++|||||||+|+|++..+.. +.+..+++.. ...+.+.+ ..+.+|||||+..+ .
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~-------~------- 69 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERF-------R------- 69 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGG-------G-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhh-------h-------
Confidence 4799999999999999999999887532 2333344433 34444544 67899999998765 2
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHH----HHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
.....+++.+|++++|+|++++.+..... .+........|+++|+||+|+..... .+.+..+.+++++
T Consensus 70 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 70 -ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp -GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 12344678899999999999875544222 22222246789999999999976432 2333457889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 149 Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 149 SAKNAININELFIEISRRIP 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHCC
T ss_pred eCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 44
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=2.5e-21 Score=175.68 Aligned_cols=149 Identities=18% Similarity=0.241 Sum_probs=108.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|++|||||||+|+|.+..+..+.+..+.+ ...+.+++..+.+|||||...+ ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~-------~~------- 77 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLGGQTSI-------RP------- 77 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC----EEEEEETTEEEEEEEEC----C-------CT-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc----eEEEEECCEEEEEEECCCCHhH-------HH-------
Confidence 45789999999999999999999988775444444432 3456678899999999998776 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--ccc--------ccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NIN--------YKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~ 366 (472)
....++..+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+.+... .+. ...++++
T Consensus 78 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 78 -YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp -TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 2345778999999999999886665433333322 25789999999999976432 111 1124579
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|+++++++|.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998774
No 45
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=181.73 Aligned_cols=152 Identities=19% Similarity=0.137 Sum_probs=111.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|.+..+.. ...++.+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RT------ 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HH------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HH------
Confidence 34799999999999999999999887642 3344555667677777777 58999999998776 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCC-ceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNI-ANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~-~~i~ 368 (472)
....+++.+|++|+|+|++++.++. +...+.+....+.|+++|+||+|+..... .+.+..++ ++++
T Consensus 94 --~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (201)
T 2hup_A 94 --ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIE 171 (201)
T ss_dssp --HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEE
Confidence 2344678999999999999875544 22333333346789999999999976322 23345577 8999
Q ss_pred EEeccCccHHHHHHHHHHHhhc
Q psy9409 369 LSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||++|.|+++++++|.+.+..
T Consensus 172 ~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 172 TSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 46
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=1.4e-21 Score=176.89 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=113.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 76 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY-------HS------ 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG-------GG------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhh-------hh------
Confidence 34799999999999999999999887653 3344445555555666654 57999999998765 21
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++... ..+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 77 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 2efe_B 77 --LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMET 154 (181)
T ss_dssp --GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEE
Confidence 234467889999999999987554432 333333335889999999999975432 2333467889999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|+++++++|.+.+..
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC-
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998753
No 47
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=8.6e-22 Score=175.79 Aligned_cols=149 Identities=23% Similarity=0.227 Sum_probs=110.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~------- 67 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF-------AS------- 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-------GG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhh-------hh-------
Confidence 3789999999999999999999877642 3344445555555566655 47899999998766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCc---c-------cccccCCCceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQ---K-------NINYKNNIANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~---~-------~~~~~~~~~~i 367 (472)
....+++.+|++++|+|++++.+... ...+.+....+.|+++|+||+|+.... . .+.+..+++++
T Consensus 68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~ 146 (170)
T 1ek0_A 68 -LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF 146 (170)
T ss_dssp -GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE
T ss_pred -hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE
Confidence 23346788999999999998755442 233333334688999999999997652 1 12234577899
Q ss_pred EEEeccCccHHHHHHHHHHHh
Q psy9409 368 YLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++||++|.|+++++++|.+.+
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHTTS
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998765
No 48
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=2.1e-21 Score=179.62 Aligned_cols=150 Identities=21% Similarity=0.188 Sum_probs=111.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||+..+ .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 71 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------R-------- 71 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------H--------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------c--------
Confidence 4799999999999999999999987643 2333334444444555554 57899999998776 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++|+|+|++++.++..... +......+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 224457889999999999998755442222 2222235789999999999976432 23344577999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998773
No 49
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=1.9e-21 Score=175.31 Aligned_cols=150 Identities=20% Similarity=0.205 Sum_probs=111.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~-------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------R-------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------H--------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------h--------
Confidence 4799999999999999999999877642 4556666777677777877 47899999997765 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC----CCCCEEEEEecCCCCcCcc------cccc-cCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP----MNIPVIYVWNKIDYSGHQK------NINY-KNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~----~~~piivV~NK~Dl~~~~~------~~~~-~~~~~~ 366 (472)
.....+++.+|++++|+|++++.+.. +...+..... .+.|+++|+||+|+..... .+.+ ..+.++
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence 22345788999999999999875443 2223322222 5789999999999974322 1222 456789
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|++++++.|.+.+.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 50
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.86 E-value=9.4e-22 Score=179.05 Aligned_cols=149 Identities=23% Similarity=0.268 Sum_probs=112.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCee--EEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL--FKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+. ...++++.+.....+.+++.. +.+|||||...+ ...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~------ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAM------ 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC----------CTT------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH-------HHH------
Confidence 479999999999999999999988753 566677777777777787765 678999998776 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vS 370 (472)
...++..+|++++|+|++++.++. ++..+..... .+.|+++|+||+|+..... .+....+.+++++|
T Consensus 69 --~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 146 (189)
T 4dsu_A 69 --RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS 146 (189)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred --HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 223567799999999999875444 3333333332 5789999999999975432 23344578999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 147 a~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.86 E-value=1.7e-21 Score=180.73 Aligned_cols=150 Identities=23% Similarity=0.169 Sum_probs=116.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|.+..+.. ...++++.+.....+.+++. .+.+|||||...+ .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 71 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF-------R-------- 71 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT-------T--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH-------H--------
Confidence 4799999999999999999999887653 45566677776677777764 7999999998776 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHH----HHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++|+|+|++++.++.... .+........|+++|+||+|+..... .+....+.+++++|
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 12445778999999999999875544322 23333346789999999999976432 23345678999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 152 a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998873
No 52
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.86 E-value=6.8e-22 Score=176.47 Aligned_cols=149 Identities=21% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.++ +..+.+|||||...+ ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHE-FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY-------HS------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG-------GG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh-------hh-------
Confidence 4799999999999999999999876542 222333333333444444 467899999998766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++++|+|++++.++.. +..+.+......|+++|+||+|+..... .+....+.+++++|
T Consensus 71 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 71 -LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp -GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 23346788999999999998754442 2333333346789999999999975432 23334678899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|++|.|+++++++|.+.+
T Consensus 150 a~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTTCTTHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998876
No 53
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=4.6e-22 Score=193.74 Aligned_cols=155 Identities=25% Similarity=0.341 Sum_probs=115.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|+||||||||+|+|++... .++++||+|.+.....+.. +..+.+|||||+..+.. ....+. +.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~-----~~~~e~--v~~ 73 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSP-----YSPEAK--VAR 73 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSC-----SSHHHH--HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCC-----CChHHH--HHH
Confidence 47899999999999999999999864 4689999999887777666 78899999999987611 111111 222
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.+.....+|++++|+|+++......|...+.. .+.|+++|+||+|+..... .+.+..+++++++||++|.|+
T Consensus 74 ~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 74 DYLLSQRADSILNVVDATNLERNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp HHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred HHHhcCCCCEEEEEecCCchHhHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCH
Confidence 22122479999999999875333333222222 5789999999999865321 344456789999999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
+++++.+.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1e-21 Score=174.80 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=109.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|+|||||+|+|++..+. ...++++.+.....+.+++ ..+.+|||||...+ ...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~------ 68 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAI------ 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------HHH------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh-------HHH------
Confidence 479999999999999999999988753 4455555555556666766 47899999998776 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...+++.+|++++|+|++++.++... ..+.+... .+.|+++|+||+|+..... .+.+..+++++++
T Consensus 69 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1u8z_A 69 --RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET 146 (168)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred --HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 33456789999999999987554422 33333332 4789999999999976432 1223456789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 147 Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 147 SAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988763
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=1.1e-21 Score=177.10 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=114.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+. ...++|+.+.....+.+++ ..+.+|||||...+ ...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~----- 73 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF-------GAM----- 73 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT-------SCC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhh-------HHH-----
Confidence 3479999999999999999999988653 5566666666666777776 46889999998776 221
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+++.+|++++|+|++++.++. ++..+++.. ..+.|+++|+||+|+..... .+....++++++
T Consensus 74 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 74 ---REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred ---HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEE
Confidence 223567899999999999875444 333343332 35789999999999976432 233445788999
Q ss_pred EEeccCccHHHHHHHHHHHhhc
Q psy9409 369 LSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||++|.|+++++++|.+.+..
T Consensus 151 ~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998843
No 56
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=2.9e-21 Score=176.01 Aligned_cols=149 Identities=21% Similarity=0.194 Sum_probs=110.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|++|||||||+|+|++.... ...| |.......+.+++..+.+|||||+..+ .
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~---------------~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVD--TISP--TLGFNIKTLEHRGFKLNIWDVGGQKSL---------------R 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCS--SCCC--CSSEEEEEEEETTEEEEEEEECCSHHH---------------H
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--cccc--cCccceEEEEECCEEEEEEECCCCHhH---------------H
Confidence 45689999999999999999999988732 2223 222344566778999999999998765 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhC-CCCCCEEEEEecCCCCcCcc--ccc--------ccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNF-PMNIPVIYVWNKIDYSGHQK--NIN--------YKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l-~~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~ 366 (472)
.....+++.+|++++|+|++++.++... ..+++.. ..+.|+++|+||+|+..... .+. ...++++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRI 156 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEE
Confidence 2244578899999999999988665533 3333221 15789999999999976532 111 1235679
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|++++++.|.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 57
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=1.9e-21 Score=175.26 Aligned_cols=150 Identities=17% Similarity=0.116 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. ...+.++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~------ 79 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RA------ 79 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT-------CH------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCeEEEEEEEECCCChHh-------hh------
Confidence 34799999999999999999999887642 2233334444445555655 57899999997766 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH---H-HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF---D-KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~---~-~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++.. | ..+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 80 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (179)
T 1z0f_A 80 --VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEA 157 (179)
T ss_dssp --HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 23346778999999999998754442 2 223333346889999999999975432 2334467899999
Q ss_pred EeccCccHHHHHHHHHHHh
Q psy9409 370 SASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~ 388 (472)
||++|.|+++++++|.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 158 SAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998876
No 58
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=179.04 Aligned_cols=151 Identities=23% Similarity=0.232 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|.+|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~------ 90 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NS------ 90 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HH------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HH------
Confidence 34799999999999999999999987653 3455556666667777776 57899999998766 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHh-CCCCCCEEEEEecCCCCcCcc-------ccccc-CCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKN-FPMNIPVIYVWNKIDYSGHQK-------NINYK-NNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~-l~~~~piivV~NK~Dl~~~~~-------~~~~~-~~~~~i~ 368 (472)
....+++.+|++|+|+|++++.++. .|...+.. ...+.|+++|+||+|+..... .+.+. .+.++++
T Consensus 91 --~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (192)
T 2il1_A 91 --ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 168 (192)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEE
T ss_pred --HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEE
Confidence 2334667899999999999875443 33333333 235789999999999976432 12223 3678999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|++++++.|.+.+.
T Consensus 169 ~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 169 ASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988763
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=1.1e-21 Score=174.70 Aligned_cols=148 Identities=24% Similarity=0.293 Sum_probs=108.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+. .....|+.+.....+.+++ ..+.+|||||...+ ...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~------ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF-------TAM------ 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS-------TTH------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHH-------HHH------
Confidence 379999999999999999999987653 3344454444455555554 47899999998876 222
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccC-CCceEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKN-NIANIY 368 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~-~~~~i~ 368 (472)
...+++.+|++++|+|++++.++. ++..+.+.. ..+.|+++|+||+|+..... .+.+.. +.++++
T Consensus 68 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 68 --RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp --HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 233567799999999999874433 333343332 35799999999999976432 122233 678999
Q ss_pred EEeccCccHHHHHHHHHHHh
Q psy9409 369 LSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~ 388 (472)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998875
No 60
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=1.4e-21 Score=179.54 Aligned_cols=151 Identities=25% Similarity=0.232 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-------------------------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK------------------------------- 271 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~------------------------------- 271 (472)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45899999999999999999999987642 3444555666666666655
Q ss_pred --------eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCC
Q psy9409 272 --------FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIP 341 (472)
Q Consensus 272 --------~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~p 341 (472)
..+.+|||||...+ .. ....+++.+|++|+|+|++++.++.....++..+. ...|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~-------~~--------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p 149 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERY-------AS--------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI 149 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGC-------TT--------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE
T ss_pred cccCccceeEEEEEECCCcHHH-------HH--------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc
Confidence 78999999998776 22 23446788999999999998755443333332221 3489
Q ss_pred EEEEEecCCCCcCcc------cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 342 VIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 342 iivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++|+||+|+..... .+.+..+++++++||++|.|+++++++|.+.+.
T Consensus 150 iilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 150 IILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999322221 223345789999999999999999999988774
No 61
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.86 E-value=1.5e-21 Score=179.52 Aligned_cols=152 Identities=19% Similarity=0.251 Sum_probs=114.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||...+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------------- 84 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-------------- 84 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------------
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH--------------
Confidence 34589999999999999999999988763 44555555555566667665 4699999998776
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc---------cccccCCCc-
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK---------NINYKNNIA- 365 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~---------~~~~~~~~~- 365 (472)
......+++.+|++++|+|++++.++. .|...++....+.|+++|+||+|+..... .+.+..+++
T Consensus 85 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 85 -DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred -HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 123445788999999999999875543 23334433346799999999999975321 233345666
Q ss_pred eEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++++||++|.|++++++.|.+.+..
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998743
No 62
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=6.9e-21 Score=188.21 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=122.1
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCC-ccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP-DINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~-~~~~~~~~~~~~~e~~~i~~ 303 (472)
.+|+|+|+||||||||+|+|++..++++++.+++|++.....+..++.++.+|||||+. .. ...........
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~-------~~~l~~~~~~~ 81 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE-------KRAINRLMNKA 81 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH-------HHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc-------hhhHHHHHHHH
Confidence 37999999999999999999999998888999999988888888889999999999987 43 33333333445
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCC-ceEEEEeccC
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNI-ANIYLSASKR 374 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~-~~i~vSA~~g 374 (472)
+...++.+|++++|+|+++. ......+.+.+ ..+.|+++|+||+|+..... .+.+..+. +++++||++|
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~~--~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTRW--TPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp TTSCCCCEEEEEEEEETTCC--CHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHHHhcCCEEEEEEeCCCC--CHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 66788999999999999772 22222333333 25789999999999986221 12333444 6899999999
Q ss_pred ccHHHHHHHHHHHhh
Q psy9409 375 IGINLLRNTLLDLIE 389 (472)
Q Consensus 375 ~gi~~L~~~l~~~~~ 389 (472)
.|++++++.+.+.+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999998874
No 63
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=181.91 Aligned_cols=152 Identities=17% Similarity=0.115 Sum_probs=108.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~------ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF-------R------ 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHH-------S------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH-------H------
Confidence 345899999999999999999999987753 4456666666667777777 68999999997654 1
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
.....+++.+|++|+|+|++++.++. ++..+......+.|+++|+||+|+..... .+.+..++++++
T Consensus 89 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 89 --SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE 166 (200)
T ss_dssp --CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence 11334678899999999999875444 22333333346889999999999965432 233456788999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|++++++.|.+.+.
T Consensus 167 ~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 167 TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 64
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.3e-21 Score=179.60 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 85 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF-------RS------ 85 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGT-------SC------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCchhh-------hh------
Confidence 34799999999999999999999887653 3344555556566677766 47899999998765 11
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.++. ++..+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 86 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 163 (191)
T 2a5j_A 86 --ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 163 (191)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEE
Confidence 2334678899999999999875444 22333333346889999999999975332 2333457789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988774
No 65
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=2.8e-21 Score=177.61 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=107.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|.+..+..+.+..+ .....+.+++..+.+|||||+..+ . .
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~-------~--------~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQA-------R--------R 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCS----CEEEEEEETTEEEEEEECCCSGGG-------T--------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCC----CCeEEEEECCEEEEEEECCCCHHH-------H--------H
Confidence 45799999999999999999999887654333333 335677788999999999998776 1 1
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--ccc---------------c
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NIN---------------Y 360 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~---------------~ 360 (472)
....+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+. .
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCS
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccc
Confidence 2345678999999999999986655333322221 25789999999999976321 111 1
Q ss_pred cCCCceEEEEeccCccHHHHHHHHHHH
Q psy9409 361 KNNIANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 361 ~~~~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
..+++++++||++|.|+++++++|.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 234579999999999999999998764
No 66
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=2.4e-21 Score=178.41 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=107.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|++|||||||+|+|++..+.. ..| |.+.....+.+++..+.+|||||...+ ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------- 88 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNICFTVWDVGGQDKI-------RP------- 88 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC------------CT-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc--cCC--cCceeEEEEEECCEEEEEEECCCCHhH-------HH-------
Confidence 456899999999999999999999887642 223 444555667788999999999998765 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-C----CCCCEEEEEecCCCCcCcc--ccc--------ccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-P----MNIPVIYVWNKIDYSGHQK--NIN--------YKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~----~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~ 366 (472)
....+++.+|++++|+|++++.++.....++..+ . .+.|+++|+||+|+..... .+. ...++++
T Consensus 89 -~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 89 -LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp -THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred -HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 1233567899999999999886655433333322 1 4789999999999976532 111 1234579
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|+++++++|.+.+.
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=1.4e-21 Score=182.82 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=115.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC------------CeeEEEEeCCCCCccccccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN------------KFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~------------~~~i~liDTpG~~~~~~~~~ 290 (472)
..+||+++|++|||||||+|+|++..+.. ...++.+.+.....+.++ ...+.||||||...+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 34799999999999999999999887642 334445555555555554 457999999997655
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-----CCCCEEEEEecCCCCcCcc-------cc
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-----MNIPVIYVWNKIDYSGHQK-------NI 358 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-----~~~piivV~NK~Dl~~~~~-------~~ 358 (472)
. .....+++.+|++|+|+|++++.++.....++..+. .+.|+++|+||+|+..... .+
T Consensus 98 --~--------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 98 --R--------SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp --H--------HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred --H--------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 2 124456789999999999998766555556666553 5789999999999976432 23
Q ss_pred cccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 359 NYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 359 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+..+++++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 168 ADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999998773
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.5e-21 Score=183.05 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=112.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|.+|||||||+|+|++.....++.+++++.+.....+.+++. .+.+|||+|.... . ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-------~---~~-- 103 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-------N---EW-- 103 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-------H---HH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-------h---hh--
Confidence 34799999999999999999999876655566677777777777888875 4678999996542 1 11
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC--CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF--PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l--~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
+ ...+++.+|++++|||+++..+++. |...+... ..+.|+++|+||+|+..... .++...++++++
T Consensus 104 l--~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e 181 (211)
T 2g3y_A 104 L--HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE 181 (211)
T ss_dssp H--HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred H--HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence 1 3446788999999999998766553 22223322 24789999999999975332 123345678999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|++++|+.|.+.+.
T Consensus 182 ~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 69
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=4e-21 Score=175.70 Aligned_cols=150 Identities=18% Similarity=0.225 Sum_probs=111.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..++|+++|++|||||||+|+|.+..+.. ..|.+ ......+.+++..+.+|||||+..+ .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~Dt~G~~~~-------~-------- 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVPTV--GVNLETLQYKNISFEVWDLGGQTGV-------R-------- 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECSST--TCCEEEEEETTEEEEEEEECCSSSS-------C--------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC--cCCCC--ceEEEEEEECCEEEEEEECCCCHhH-------H--------
Confidence 356899999999999999999999887643 23322 2334556778899999999998876 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHH----HHHhC-CCCCCEEEEEecCCCCcCcc--cc--------cccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNF-PMNIPVIYVWNKIDYSGHQK--NI--------NYKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l-~~~~piivV~NK~Dl~~~~~--~~--------~~~~~~~~ 366 (472)
.....+++.+|++++|+|++++.+...... +++.. ..+.|+++|+||+|+..... .+ ....++++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 124457789999999999999866653333 32221 15789999999999976532 11 12234579
Q ss_pred EEEEeccCccHHHHHHHHHHHhhc
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+++||++|.|+++++++|.+.+..
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEccCCCccCHHHHHHHHHHHHHh
Confidence 999999999999999999998743
No 70
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=6e-22 Score=206.94 Aligned_cols=164 Identities=30% Similarity=0.435 Sum_probs=120.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|.+|+|||||+|+|++.+...+++.++||++.....+.+++.++.||||||+++.. ...+..+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~----~~~~~~e~~~~ 268 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG----KVYETTEKYSV 268 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBT----TBCCCCSHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCc----ccchHHHHHHH
Confidence 35689999999999999999999999888889999999999888899999999999999987641 11122233334
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc--------c----ccccCCCceEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK--------N----INYKNNIANIY 368 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~--------~----~~~~~~~~~i~ 368 (472)
.++..+++.+|++|+|+|++++.. .....+...+ ..+.|+++|+||+|+.+... . +....++++++
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 445567889999999999998633 3223333222 25799999999999986542 1 11123578999
Q ss_pred EEeccCccHHHHHHHHHHHhhc
Q psy9409 369 LSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||++|.|++++++.+.+.+..
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.85 E-value=1.5e-21 Score=176.46 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=105.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---CeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---KFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.++ ...+.+|||||...+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------- 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-------------- 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh--------------
Confidence 45799999999999999999999887642 344555566666666665 357899999997765
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC----CCCCEEEEEecCCCCcCcc--------cccc-cC
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP----MNIPVIYVWNKIDYSGHQK--------NINY-KN 362 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~----~~~piivV~NK~Dl~~~~~--------~~~~-~~ 362 (472)
......+++.+|++++|+|++++.++. +...+..... .+.|+++|+||+|+..... .+.+ ..
T Consensus 72 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 72 -QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG 150 (182)
T ss_dssp ------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred -hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC
Confidence 122445788999999999999875443 2223333222 5789999999999964332 1222 45
Q ss_pred CCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 363 NIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 363 ~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+.+++++||++|.|+++++++|.+.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 151 DIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp SCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999988763
No 72
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=178.30 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=115.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|.+..... ...++++.+.....+.+++. .+.+|||||...+ ...+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~~---- 89 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA-------GGWL---- 89 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG-------GHHH----
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccc-------hhhh----
Confidence 45799999999999999999998765432 45677777877777778775 5788999998765 2211
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+++.+|++|+|+|++++.++. ++..+..... .+.|+++|+||+|+..... .+.+..++++++
T Consensus 90 ---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e 166 (195)
T 3cbq_A 90 ---RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIE 166 (195)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred ---HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEE
Confidence 123567899999999999875544 3333333322 4789999999999975432 233445778999
Q ss_pred EEeccCccHHHHHHHHHHHhhc
Q psy9409 369 LSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+||++|.|++++++.|.+.+..
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHT
T ss_pred EcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=1.8e-21 Score=177.63 Aligned_cols=150 Identities=18% Similarity=0.168 Sum_probs=111.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEE-EEEEEeCC-----------eeEEEEeCCCCCcccccccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKI-TKTIQINK-----------FLFKITDTAGIPDINSKIKK 291 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~-~~~~~~~~-----------~~i~liDTpG~~~~~~~~~~ 291 (472)
.++|+++|++|||||||+|+|++..+.. ...+..+.+.. ...+.+++ ..+.+|||||+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------ 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence 4799999999999999999999876642 33444445544 44555553 58999999998776
Q ss_pred chhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc-------ccc
Q psy9409 292 NINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NIN 359 (472)
Q Consensus 292 ~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~ 359 (472)
.. ....+++.+|++++|+|++++.+.... ..+..... .+.|+++|+||+|+..... .+.
T Consensus 84 -~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 154 (195)
T 3bc1_A 84 -RS--------LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA 154 (195)
T ss_dssp -HH--------HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred -HH--------HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence 22 244578899999999999987544422 22333332 5789999999999976432 233
Q ss_pred ccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 360 YKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 360 ~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+..+++++++||++|.|++++++.|.+.+.
T Consensus 155 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 155 EKYGIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999998873
No 74
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.9e-21 Score=175.40 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=111.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|.+|||||||+|+|++....... ...|.+.....+.+++..+.+|||||...+ .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRY-------R-------- 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTT-------G--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHH-------H--------
Confidence 35689999999999999999999998733222 223445566777888999999999998876 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC---CCCCEEEEEecCCCCcCcc--c----c--cc--cCCC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP---MNIPVIYVWNKIDYSGHQK--N----I--NY--KNNI 364 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~---~~~piivV~NK~Dl~~~~~--~----~--~~--~~~~ 364 (472)
.....+++.+|++++|+|++++.++. ++..+++... .+.|+++|+||+|+..... . + .. ..++
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCce
Confidence 22345778999999999999865444 3333433322 4789999999999976532 1 1 11 1356
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999998874
No 75
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=6.1e-22 Score=176.60 Aligned_cols=150 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ ..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~------ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF-------DA------ 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT-------TC------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH-------HH------
Confidence 34799999999999999999999877642 4455555667677777765 47899999997765 11
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.+.... ..+.... .+.|+++|+||+|+..... .+.+..+.+++++
T Consensus 70 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1z2a_A 70 --ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT 146 (168)
T ss_dssp --CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred --HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 233467789999999999987544422 2232222 5789999999999976432 2333457799999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 147 Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 147 SVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp BTTTTBSSHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 76
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=3.4e-21 Score=176.26 Aligned_cols=150 Identities=21% Similarity=0.166 Sum_probs=110.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||...+ .
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~-------- 85 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY-------R-------- 85 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS-------C--------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH-------h--------
Confidence 4799999999999999999999887643 2333334444444455543 57899999998776 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++++|+|++++.++... ..+.+....+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEAS 165 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 1244577899999999999987544422 223332235789999999999976432 23334578999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 166 a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998774
No 77
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=2.3e-21 Score=182.04 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=117.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEE-eCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQ-INKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|.+|||||||+|+|++.+ .+.+++.+++|++.....+. .++..+.||||||+....... .....+.. .
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~-~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG-AAKAHWEQ-L 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS-THHHHHHH-H
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh-hhHHHHHH-H
Confidence 45799999999999999999999987 56778999999987666665 567899999999986541100 00111111 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc----------cccc------cCC
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK----------NINY------KNN 363 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~----------~~~~------~~~ 363 (472)
+.........+|++++|+|++++.. .....+++.+. .+.|+++|+||+|+..... .+.. ..+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 2233344556899999999998633 32233333332 5789999999999986543 1122 245
Q ss_pred CceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 364 IANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 364 ~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+++++||++|.|++++++.|.+.+..
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 689999999999999999999998854
No 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=179.23 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=114.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+. ..+++|+.+.....+.+++. .+.+|||||...+ ..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~------ 77 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AA------ 77 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HH------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HH------
Confidence 4579999999999999999999988753 55666666666666777764 7899999998876 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
....++..+|++++|+|++++.++. ++..+..... .+.|+++|+||+|+..... .+.+..+.++++
T Consensus 78 --~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 78 --IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp --HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEE
Confidence 2334667899999999999875544 2233333332 4789999999999976432 123345678999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|+++++++|.+.+.
T Consensus 156 ~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 156 TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=2.5e-21 Score=175.67 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=113.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+. ..+++++.+.....+.+++ ..+.+|||||...+ ...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~----- 82 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAI----- 82 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHH-----
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHH-----
Confidence 3479999999999999999999987753 4555666666666667776 47899999998876 222
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC-CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~-~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+++.+|++++|+|++++.++. ++..+..... .+.|+++|+||+|+..... .+.+..++++++
T Consensus 83 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 83 ---RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred ---HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence 334667899999999999875444 2233333332 4789999999999976432 233456788999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|+++++++|.+.+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 160 TSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=2.2e-21 Score=177.64 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=109.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
.++.++|+++|++|||||||+|+|++..+.. ...+.+..+ ...+...+..+.+|||||...+ ..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~~-------~~------ 82 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-DMIPTVGFN--MRKITKGNVTIKLWDIGGQPRF-------RS------ 82 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEE--EEEEEETTEEEEEEEECCSHHH-------HT------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCCCcee--EEEEEeCCEEEEEEECCCCHhH-------HH------
Confidence 3456899999999999999999999877642 223322222 2346678899999999997765 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHH----HHHHhC-CCCCCEEEEEecCCCCcCcc--cc--------cccCCCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNF-PMNIPVIYVWNKIDYSGHQK--NI--------NYKNNIA 365 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l-~~~~piivV~NK~Dl~~~~~--~~--------~~~~~~~ 365 (472)
....+++.+|++++|+|++++.++.... .+++.. ..+.|+++|+||+|+..... .+ ....+.+
T Consensus 83 --~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 83 --MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp --THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred --HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCee
Confidence 2334668899999999999876655333 333221 15789999999999976432 11 1123457
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998764
No 81
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=181.42 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=111.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe--CCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~--~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|.+|||||||+|+|++..+. ..++.|+.+.....+.+ .+..+.+|||||...+ .
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~------ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY-------S------ 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT-------C------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccch-------H------
Confidence 45689999999999999999999998875 33334444443444444 4567899999998776 1
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc-------cccccCCCceE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANI 367 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i 367 (472)
.....+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+....+++++
T Consensus 87 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 87 --ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp --CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred --HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 12445788999999999999875555333333332 24789999999999975442 23345578999
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|++++++.|.+.+..
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998853
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=2.6e-21 Score=179.13 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|.+..+..+.+..+.+ ...+.+++.++.+|||||+..+ ..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~-------~~-------- 84 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQA-------RR-------- 84 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC-----------CC--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhh-------HH--------
Confidence 4579999999999999999999998765433333333 3567788899999999998766 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc--cccc---------------
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK--NINY--------------- 360 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~--~~~~--------------- 360 (472)
....+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+.+
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 2345678999999999999876655333322221 25789999999999975321 1100
Q ss_pred -----cCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 361 -----KNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 361 -----~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
..+.+++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1345799999999999999999997654
No 83
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=2.2e-21 Score=177.60 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=112.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~------ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF-------RK------ 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHH-------HT------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhh-------hh------
Confidence 45899999999999999999999877643 3455555666666777776 57999999997655 10
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
.....+++.+|++|+|+|++++.++. +...+.+.+ ..+.|+++|+||+|+..... .+....++++++
T Consensus 85 -~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 163 (189)
T 1z06_A 85 -SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFE 163 (189)
T ss_dssp -TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred -hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEE
Confidence 12334678899999999999864433 334444544 36789999999999976432 233456789999
Q ss_pred EEeccC---ccHHHHHHHHHHHh
Q psy9409 369 LSASKR---IGINLLRNTLLDLI 388 (472)
Q Consensus 369 vSA~~g---~gi~~L~~~l~~~~ 388 (472)
+||++| .|++++++.|.+.+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHHC---
T ss_pred EeCCcCCcccCHHHHHHHHHHHH
Confidence 999999 99999999998765
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=2.3e-21 Score=179.65 Aligned_cols=151 Identities=25% Similarity=0.291 Sum_probs=114.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~------- 71 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF-------Q------- 71 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG-------S-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH-------H-------
Confidence 45799999999999999999999887653 4455666777777777766 57899999997765 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC----CCCCEEEEEecCCCCcCcc------cccc-cCCCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP----MNIPVIYVWNKIDYSGHQK------NINY-KNNIA 365 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~----~~~piivV~NK~Dl~~~~~------~~~~-~~~~~ 365 (472)
.....+++.+|++|+|+|++++.++. +...+..... .+.|+++|+||+|+..... .+.. ..+.+
T Consensus 72 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 72 -SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp -CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred -HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 12345678999999999999875443 2223333222 4789999999999974332 1222 45678
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|+++++++|.+.+.
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998874
No 85
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.6e-21 Score=182.30 Aligned_cols=152 Identities=21% Similarity=0.184 Sum_probs=110.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+ .
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~------- 76 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY-------R------- 76 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTT-------T-------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccch-------h-------
Confidence 34799999999999999999999987754 3445566666666777777 57899999998776 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
.....+++.+|++|+|+|++++.++... ..+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 77 -~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 77 -AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp -CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 1244578899999999999987555432 233333345789999999999975432 2334467899999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|+++++++|.+.+..
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998843
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=186.05 Aligned_cols=150 Identities=22% Similarity=0.214 Sum_probs=109.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|++..+.. ...++++.+.....+.+++ ..+.+|||||...+ .
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------~ 96 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF---------------R 96 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTC---------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhH---------------H
Confidence 4799999999999999999999987653 5567777777778888877 57899999998776 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHh---C-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN---F-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~---l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
.....+++.+|++++|+|++++.++.....++.. . ..+.|+++|+||+|+..... .+....+++++++|
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEE
Confidence 2244578899999999999997655533333332 2 35789999999999975432 23445678999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 177 A~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp C---HHHHHHHHHHTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 87
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=3.3e-21 Score=175.00 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=110.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCee--EEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL--FKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+. .....++.+........++.. +.+|||||...+ ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~----- 82 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF-------SAM----- 82 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGG-------CSS-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhh-------HHH-----
Confidence 3479999999999999999999987654 344445444446667777754 566999998766 221
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
...+++.+|++++|+|++++.++. ++..+.+.. ..+.|+++|+||+|+..... .+.+..++++++
T Consensus 83 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 83 ---REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp ---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEE
T ss_pred ---HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEE
Confidence 233567899999999999875443 333333322 36789999999999976432 233445789999
Q ss_pred EEec-cCccHHHHHHHHHHHhh
Q psy9409 369 LSAS-KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~-~g~gi~~L~~~l~~~~~ 389 (472)
+||+ +|.|++++++.|.+.+.
T Consensus 160 ~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp EBCSSSCBSHHHHHHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHHHHHHh
Confidence 9999 99999999999998764
No 88
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=177.99 Aligned_cols=151 Identities=23% Similarity=0.202 Sum_probs=109.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC--CeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.++ +..+.+|||||+..+ ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 89 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY-------RA------ 89 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT-------CT------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh-------hh------
Confidence 34799999999999999999999987653 223333344444445554 457899999998776 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH---H-HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF---D-KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~---~-~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++|+|+|++++.++.. | ..+......+.|+++|+||+|+..... .+....+++++++
T Consensus 90 --~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (193)
T 2oil_A 90 --ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLET 167 (193)
T ss_dssp --THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred --hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 23346788999999999998754432 2 223222235789999999999976432 2333457889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 168 Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 168 SALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988763
No 89
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2.3e-21 Score=201.53 Aligned_cols=157 Identities=27% Similarity=0.414 Sum_probs=108.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
.+|+|+|.||||||||+|+|++...+++++.||+|+|.....+.+++.++.+|||||+.... .+.+.......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~------~~~~~~~~~~~~ 75 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP------QDIISQKMKEVT 75 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSG------GGCCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccc------cchHHHHHHHHH
Confidence 47999999999999999999999988889999999999999999999999999999987630 111111123345
Q ss_pred hcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcC-cccc-cc--cCCC-ceEEEEeccCccH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGH-QKNI-NY--KNNI-ANIYLSASKRIGI 377 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~-~~~~-~~--~~~~-~~i~vSA~~g~gi 377 (472)
..+++.+|++|+|+|++.+.+.. ++..+++. .++|+++|+||+|+... .... .+ ..+. +++++||++|.|+
T Consensus 76 ~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 76 LNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp HHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 66889999999999998764322 23333332 47899999999998643 1111 11 2344 6899999999999
Q ss_pred HHHHHHHHHHhh
Q psy9409 378 NLLRNTLLDLIE 389 (472)
Q Consensus 378 ~~L~~~l~~~~~ 389 (472)
++|++.+.+.+.
T Consensus 154 ~~L~~~i~~~l~ 165 (439)
T 1mky_A 154 DTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988774
No 90
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.8e-21 Score=177.53 Aligned_cols=157 Identities=25% Similarity=0.390 Sum_probs=115.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.++|+++|++|||||||+|+|++..+. ++..|++|.+.....+.+++..+.+|||||+..+. +....+. +..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~--~~~ 78 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT-----ANSIDEI--IAR 78 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS-----SSSHHHH--HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc-----cccHHHH--HHH
Confidence 469999999999999999999997754 57889999998888999999999999999988761 0111111 111
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEeccCccH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSASKRIGI 377 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA~~g~gi 377 (472)
.......+|++++|+|.++......|...+. ..+.|+++|+||+|+..... .+.+..+++++++||++|.|+
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATALERNLYLTLQLM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGGHHHHHHHHHHHH--TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred HHHhccCCCEEEEEecchhHHHHHHHHHHHH--hcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 1111135899999999886322222222222 35789999999999865431 234445789999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy9409 378 NLLRNTLLDLIEK 390 (472)
Q Consensus 378 ~~L~~~l~~~~~~ 390 (472)
+++++.+.+.+..
T Consensus 157 ~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 157 EELKKAISIAVKD 169 (188)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998853
No 91
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=176.92 Aligned_cols=152 Identities=19% Similarity=0.152 Sum_probs=108.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHH
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEK 298 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~ 298 (472)
....++|+++|++|||||||+|+|++..+. ..+++|+.+.....+.+++. .+.+|||||...+ ..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~---- 83 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF-------DK---- 83 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC-------SS----
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH-------HH----
Confidence 455689999999999999999999988753 56666777777777777775 5679999998876 11
Q ss_pred HhHHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCc-----------c-------
Q psy9409 299 IGIERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQ-----------K------- 356 (472)
Q Consensus 299 ~~i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~-----------~------- 356 (472)
....++.++|++++|+|++++.++.. |...+.....+.|+++|+||+|+.... .
T Consensus 84 ----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 84 ----LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp ----SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred ----HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 13346789999999999998755442 222232223589999999999997631 1
Q ss_pred -cccccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 -NINYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 -~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+..+. +++++||++|.|++++++.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 12223355 8999999999999999999998874
No 92
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.5e-21 Score=175.61 Aligned_cols=151 Identities=24% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF-------RT------ 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG-------CC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh-------hh------
Confidence 34799999999999999999999887642 3344444555555556654 57899999998766 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~v 369 (472)
....+++.+|++|+|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+.+..+++++++
T Consensus 80 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T 1x3s_A 80 --LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEA 157 (195)
T ss_dssp --SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEe
Confidence 1334678899999999999875444333333222 14689999999999954332 2333457889999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|+++++++|.+.+.
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999884
No 93
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.3e-21 Score=173.32 Aligned_cols=149 Identities=23% Similarity=0.250 Sum_probs=105.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...+. ........+..++ ..+.+|||||...+ ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~------- 66 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SYIPT-VEDTYRQVISCDKSICTLQITDTTGSHQF-------PA------- 66 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SCCCC-SCEEEEEEEEETTEEEEEEEEECCSCSSC-------HH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCC-ccccEEEEEEECCEEEEEEEEECCCchhh-------HH-------
Confidence 4799999999999999999999876532 22222 2222233344444 46899999998876 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCC--CCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFP--MNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~--~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
....++..+|++++|+|++++.+.. ++..+.+... .+.|+++|+||+|+..... .+....++++++
T Consensus 67 -~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 67 -MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred -HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 2333567799999999999864433 2333332211 4789999999999976432 123344678999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|+++++++|.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC
T ss_pred ecCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=5.6e-21 Score=175.44 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=111.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++ ..+.+|||||...+ .
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~-------- 80 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY-------D-------- 80 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS-------T--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcch-------h--------
Confidence 479999999999999999999988653 4555566555566677766 67899999998876 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~ 358 (472)
.....+++.+|++++|+|++++.++.. |...+.....+.|+++|+||+|+..... .+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 224457889999999999998754432 2222322235899999999999976421 12
Q ss_pred cccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 359 NYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+..+. +++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 223355 8999999999999999999988763
No 95
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.84 E-value=4.7e-21 Score=179.67 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=111.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+||+++|.+|||||||+|+|++..+. ..+..|+.+.....+.+++ ..+.+|||||...+ .
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~------ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-------D------ 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-------T------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-------H------
Confidence 45689999999999999999999988764 3434444444444455544 57899999998776 1
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcC------------cc-------
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGH------------QK------- 356 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~------------~~------- 356 (472)
.....+++.+|++|+|+|++++.++. .|...+.....+.|+++|+||+|+... ..
T Consensus 90 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 90 --NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred --HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 12445788999999999999975544 233333333468999999999999763 11
Q ss_pred cccccCCC-ceEEEEeccCcc-HHHHHHHHHHHhhc
Q psy9409 357 NINYKNNI-ANIYLSASKRIG-INLLRNTLLDLIEK 390 (472)
Q Consensus 357 ~~~~~~~~-~~i~vSA~~g~g-i~~L~~~l~~~~~~ 390 (472)
.+.+..++ +++++||++|.| ++++++.|.+.+..
T Consensus 168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 23344567 899999999998 99999999998743
No 96
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=2.8e-21 Score=179.64 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=110.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCee--EEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL--FKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
.+.+||+++|.+|||||||+++|++..+. ....+++.+.....+.+++.. +.+|||||+..+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------- 91 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY-------------- 91 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG--------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhh--------------
Confidence 35689999999999999999999987663 556667777777777777655 559999998776
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------------------- 356 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~------------------- 356 (472)
......+++.+|++++|+|++++.++. .|...+.....+.|+++|+||+|+.....
T Consensus 92 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 92 -DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 122445788999999999999875543 23333333336899999999999976532
Q ss_pred cccccCC-CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 357 NINYKNN-IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 357 ~~~~~~~-~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+.+..+ .+++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1222334 3699999999999999999998754
No 97
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=1.8e-21 Score=202.08 Aligned_cols=157 Identities=25% Similarity=0.404 Sum_probs=103.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
++|+++|+||||||||+|+|++...+++++.||+|+|.....+.+++..+.+|||||+... .+.+.......+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~-------~~~~~~~~~~~~ 76 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG-------DEPFLAQIRQQA 76 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCc-------chhHHHHHHHHH
Confidence 6899999999999999999999998889999999999999898899999999999998743 222322223445
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcccccc--cCCC-ceEEEEeccCccHHHH
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNINY--KNNI-ANIYLSASKRIGINLL 380 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~~~~~--~~~~-~~i~vSA~~g~gi~~L 380 (472)
..+++.+|++|+|+|++++.+.. ...+.+.+ ..++|+++|+||+|+........+ ..+. +++++||++|.|+++|
T Consensus 77 ~~~~~~ad~il~vvD~~~~~~~~-d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 77 EIAMDEADVIIFMVNGREGVTAA-DEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHH
T ss_pred HHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHH
Confidence 66788999999999999864432 22233322 357899999999999765332211 1233 6899999999999999
Q ss_pred HHHHHHHhh
Q psy9409 381 RNTLLDLIE 389 (472)
Q Consensus 381 ~~~l~~~~~ 389 (472)
++.+.+.+.
T Consensus 156 ~~~i~~~l~ 164 (436)
T 2hjg_A 156 LDAVAEHFK 164 (436)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHhcC
Confidence 999998874
No 98
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1e-21 Score=180.16 Aligned_cols=153 Identities=20% Similarity=0.132 Sum_probs=110.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcce-ecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAI-VTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~-v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
...+||+++|++|||||||+|+|++..+.. ..+..+++.......+...+..+.+|||||...+ ..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 87 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RT------ 87 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HH------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HH------
Confidence 345899999999999999999999876532 1222233333333333335678999999997665 22
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH---HH-HHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF---DK-KIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~-~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
....+++.+|++++|+|++++.+++. |. .+......+.|+++|+||+|+..... .+.+..+++++++
T Consensus 88 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (191)
T 3dz8_A 88 --ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEA 165 (191)
T ss_dssp --HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred --HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 23446789999999999998755442 22 22222236889999999999975432 2334557899999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 99
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=179.07 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+. ..+.+|+.+.....+.+++. .+.+|||||...+ ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~------ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY-------DR------ 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhh-------hH------
Confidence 4589999999999999999999988764 34444555555566667664 6899999998766 21
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------c
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------N 357 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~ 357 (472)
....++..+|++++|+|++++.++.. |...+.....+.|+++|+||+|+..... .
T Consensus 98 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 98 --LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred --HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 23346789999999999998755432 3333333336789999999999976531 1
Q ss_pred ccccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 358 INYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 358 ~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+.+..+. +++++||++|.|++++++.|.+.+.
T Consensus 176 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 176 MARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp HHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2334465 8999999999999999999998874
No 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=177.29 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=103.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...++|+++|++|||||||+|+|++..+.. ...+..+.+.....+.+++ ..+.+|||||...+ ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~----- 92 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RS----- 92 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTC-------HH-----
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hh-----
Confidence 345899999999999999999999877532 2223333344445555655 56899999998876 22
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchH---HHHHHH-hCCCCCCEEEEEecCCCCcC------cc-------cccccC
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIK-NFPMNIPVIYVWNKIDYSGH------QK-------NINYKN 362 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~-~l~~~~piivV~NK~Dl~~~------~~-------~~~~~~ 362 (472)
....+++.+|++|+|+|++++.++.. |...+. ....+.|+++|+||+|+... .. .+....
T Consensus 93 ---~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 93 ---IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp ---HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ---hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 23346778999999999998754442 222222 23357899999999999632 11 122345
Q ss_pred CCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 363 NIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 363 ~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++++++||++|.|++++++.|.+.+.
T Consensus 170 ~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 GALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 778999999999999999999998764
No 101
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=5.9e-21 Score=173.30 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=111.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|.+..+. .....|+.+.....+.+++. .+.+|||||+..+ .
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~-------- 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------D-------- 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG-------T--------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH-------H--------
Confidence 479999999999999999999987653 44455555555666667664 5679999998766 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~ 358 (472)
.....+++.+|++++|+|++++.++.. |...+.....+.|+++|+||+|+.+... .+
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 123457789999999999998754432 3333333234899999999999976421 12
Q ss_pred cccCCC-ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 359 NYKNNI-ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+..+. +++++||++|.|++++++.|.+.+..
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 233455 89999999999999999999998853
No 102
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=1.2e-20 Score=167.33 Aligned_cols=148 Identities=23% Similarity=0.234 Sum_probs=109.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
++|+++|++|||||||+|+|++..+. ...++++.+.....+..++. .+.+|||||...+ ...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~------- 67 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAM------- 67 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC-------CHH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhh-------hHH-------
Confidence 68999999999999999999987653 34445555555566666654 5789999998876 222
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHH----hCC-CCCCEEEEEecCCCCcCcc------cccccCCCceEEEEe
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIK----NFP-MNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSA 371 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~----~l~-~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA 371 (472)
...++..+|++++|+|++++.+......++. ... .+.|+++|+||+|+..... .+.+..+.+++++||
T Consensus 68 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 68 -RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred -HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 2235678999999999998754442222222 222 4799999999999976332 233445789999999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.|+++++++|.+.+.
T Consensus 147 ~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.84 E-value=4.4e-21 Score=176.80 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||+|+|++.....++..++++.+.....+.+++. .+.+|||+|.... ... +
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-------~~~-----~ 73 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-------NEW-----L 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----------CT-----T
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-------hhh-----H
Confidence 4799999999999999999999765544566666777777777888876 4578999996542 000 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---H-HHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---D-KKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYL 369 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~-~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~v 369 (472)
...+++.+|++++|||+++..++.. | ..+.+.. ..+.|+++|+||+|+..... .++...+++++++
T Consensus 74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~ 151 (192)
T 2cjw_A 74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIET 151 (192)
T ss_dssp --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEe
Confidence 2335667999999999998755542 2 2233222 25789999999999975332 1223456789999
Q ss_pred EeccCccHHHHHHHHHHHhh
Q psy9409 370 SASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~ 389 (472)
||++|.|++++++.|.+.+.
T Consensus 152 SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999874
No 104
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=2e-21 Score=182.59 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=113.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..+||+++|.+|||||||+|+|+... ...+.+.++++.......+...+..+.+|||||...+ ..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------- 79 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF-------GG------- 79 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT-------SC-------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH-------hH-------
Confidence 34799999999999999999966543 3445677777777666555545678999999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch---HH-HHHHHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEec
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD---FD-KKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSAS 372 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~---~~-~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~ 372 (472)
....+++.+|++++|+|++++.++. .| ..+.+. ..+.|+++|+||+|+.+... .+.+..+++++++||+
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGG
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCC
Confidence 1334667899999999999875543 22 333332 35889999999999976443 2333456789999999
Q ss_pred cCccHHHHHHHHHHHhh
Q psy9409 373 KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~ 389 (472)
+|.|+++++++|.+.+.
T Consensus 158 ~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 158 SNYNFEKPFLWLARKLI 174 (221)
T ss_dssp GTBTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999999874
No 105
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=7.4e-21 Score=173.89 Aligned_cols=149 Identities=24% Similarity=0.232 Sum_probs=106.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|.+|||||||+|+|++..+. ....+++.+.....+.+++. .+.+|||||...+ ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~------- 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SA------- 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHH-------HH-------
Confidence 479999999999999999999987653 44555666666666777764 5899999998765 21
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHH---HHh-CC-CCCCEEEEEecCCCCcCcc------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKN-FP-MNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~-l~-~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vS 370 (472)
....++..+|++++|+|++++.++.....+ +.. .. .+.|+++|+||+|+..... .+.+..+++++++|
T Consensus 85 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 85 -MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred -HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEe
Confidence 234577899999999999987544422222 222 22 4789999999999976322 23334567999999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 164 a~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998874
No 106
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=175.42 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=107.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|++..+.. ...+++.+.....+.+++ ..+.+|||||...+ .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~-------- 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDY-------D-------- 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTC-------T--------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCEEEEEEEEECCCcHHH-------H--------
Confidence 4699999999999999999999887652 333344444444566666 47899999998876 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~ 358 (472)
.....++..+|++++|+|++++.++. .|...+.....+.|+++|+||+|+..... .+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 22345778999999999999864433 23333333335899999999999976521 11
Q ss_pred cccCCC-ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 359 NYKNNI-ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
....+. +++++||++|.|++++++.|.+.+..
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 223344 79999999999999999999998743
No 107
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=2.6e-21 Score=179.04 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCcee-eeEEEEEEEeCC----eeEEEEeCCCCCccccccccchhHHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTT-RDKITKTIQINK----FLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt-~d~~~~~~~~~~----~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
..++|+++|++|||||||+|+|++..........+|+ .+.....+.+++ ..+.+|||||+..+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------ 86 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY------------ 86 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH------------
Confidence 4579999999999999999999998332234444444 466677777774 57999999998765
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCchHHHH----HHHhCC---CCCCEEEEEecCCCCc-Ccc-------cccccC
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKK----IIKNFP---MNIPVIYVWNKIDYSG-HQK-------NINYKN 362 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~----il~~l~---~~~piivV~NK~Dl~~-~~~-------~~~~~~ 362 (472)
......+++.+|++|+|+|++++.++..... +..... .+.|+++|+||+|+.. ... .+.+..
T Consensus 87 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 87 ---KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN 163 (208)
T ss_dssp ---HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred ---HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence 1234567889999999999998755443333 333333 4789999999999976 322 233455
Q ss_pred CCceEEEEecc-CccHHHHHHHHHHHhh
Q psy9409 363 NIANIYLSASK-RIGINLLRNTLLDLIE 389 (472)
Q Consensus 363 ~~~~i~vSA~~-g~gi~~L~~~l~~~~~ 389 (472)
+++++++||++ |.|+++++++|.+.+.
T Consensus 164 ~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 TLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp TCEEEECCC-------CHHHHHHHHHHH
T ss_pred CCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 78999999999 9999999999988764
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=3.1e-20 Score=170.29 Aligned_cols=158 Identities=25% Similarity=0.264 Sum_probs=101.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh-
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG- 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~- 300 (472)
..++|+++|++|||||||+|+|++.. ...+.+.+++|.+..... .+ ..+.+|||||+.... .+.+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~----~~~~~~~~~~~ 94 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAK----VSKSEREAWGR 94 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCS----SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccc----cCHHHHHHHHH
Confidence 45899999999999999999999987 455677888887765433 33 479999999976541 1111111110
Q ss_pred -HHhhhcccccccEEEEEEeCCCCCCchH--HHHHHHhCCCCCCEEEEEecCCCCcCcc------c----ccccCCCceE
Q psy9409 301 -IERTWVELKNSDIIIYVQDARYDKHTDF--DKKIIKNFPMNIPVIYVWNKIDYSGHQK------N----INYKNNIANI 367 (472)
Q Consensus 301 -i~~~~~~~~~aD~il~v~D~s~~~~~~~--~~~il~~l~~~~piivV~NK~Dl~~~~~------~----~~~~~~~~~i 367 (472)
..........+|++++|+|++++.+... +..++.. .+.|+++|+||+|+..... . +....+.+++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 1122222344599999999998754432 1223322 5789999999999987543 1 2223457899
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|+++++++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 109
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.83 E-value=2.4e-21 Score=199.41 Aligned_cols=157 Identities=29% Similarity=0.425 Sum_probs=112.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..++|+++|++|+|||||+|+|++.++..+++.+++|.+.....+.+.+. ++.+|||||+.++ ... ....+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~-------~~l-~~~~~ 104 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV-------GEL-GRLRV 104 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC-------CTT-CCCCH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc-------cch-hHHHH
Confidence 45799999999999999999999999887889999999999999998776 8999999999876 111 11113
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEEeccCcc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLSASKRIG 376 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vSA~~g~g 376 (472)
.++..++..+|++|+|+|++.......|...++. .+.|+++|+||+|+..... .+.+..+++++++||++|.|
T Consensus 105 ~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDSAPTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 3456678899999999999332222233333333 3789999999999987653 24445678999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy9409 377 INLLRNTLLDLIE 389 (472)
Q Consensus 377 i~~L~~~l~~~~~ 389 (472)
++++++.|.+.+.
T Consensus 183 I~eL~~~L~~~l~ 195 (423)
T 3qq5_A 183 FDDIGKTISEILP 195 (423)
T ss_dssp TTTHHHHHHHHSC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999983
No 110
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.83 E-value=8.5e-21 Score=177.65 Aligned_cols=151 Identities=20% Similarity=0.129 Sum_probs=105.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC-C--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-K--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~-~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
..+||+++|.+|||||||+|+|++..+.. ...+..+.+.....+... + ..+.+|||||+..+ ..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~----- 76 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK-------AV----- 76 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT-------SC-----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh-------ch-----
Confidence 45899999999999999999999876542 122222222222333332 2 67999999998765 11
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchH---H-HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDF---D-KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~---~-~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
....++..+|++|+|+|++++.++.. | ..+......+.|+++|+||+|+..... .+....++++++
T Consensus 77 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 77 ---LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp ---CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred ---HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 12335678999999999998754442 2 333333345689999999999976532 233456788999
Q ss_pred EEeccCccHHHHHHHHHHHhh
Q psy9409 369 LSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+||++|.|++++++.|.+.+.
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999884
No 111
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=174.88 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=108.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+. ..+..|+.+.....+.+++ ..+.+|||||...+ .. +
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~-~---- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP-------RN-C---- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C-------CC-T----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcc-------hh-H----
Confidence 4479999999999999999999988753 4555555555555566665 46889999998766 21 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-------CCCCCEEEEEecCCCCcCcc-------cccccCCCce
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-------PMNIPVIYVWNKIDYSGHQK-------NINYKNNIAN 366 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-------~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~ 366 (472)
..+++.+|++++|+|++++.++.....++..+ ..+.|+++|+||+|+..... .+.+..++++
T Consensus 86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 161 (187)
T 3c5c_A 86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLF 161 (187)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcE
Confidence 12567899999999999875555322222222 15789999999999965432 2334457899
Q ss_pred EEEEe-ccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSA-SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA-~~g~gi~~L~~~l~~~~~ 389 (472)
+++|| ++|.|++++++.|.+.+.
T Consensus 162 ~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 162 FEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp EECCSSSCSHHHHHHHHHHHHHHH
T ss_pred EEEeecCccccHHHHHHHHHHHHh
Confidence 99999 899999999999988763
No 112
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.83 E-value=9.1e-21 Score=171.28 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=105.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|++|||||||+|+|++..+.. ...|..+.....+.+++ ..+.+|||||....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 67 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---------------- 67 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCchh----------------
Confidence 4799999999999999999999987753 22333344456667766 46789999997642
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHH---HHHhC----CCCCCEEEEEecCCCCcC--cc-------cccc-cCCC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNF----PMNIPVIYVWNKIDYSGH--QK-------NINY-KNNI 364 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~---il~~l----~~~~piivV~NK~Dl~~~--~~-------~~~~-~~~~ 364 (472)
.+++.+|++++|+|++++.++..... .+..+ ..+.|+++|+||+|+... .. .+.. ..++
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 143 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC
Confidence 24567999999999998765553333 23322 257899999999999421 11 1222 2367
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++++||++|.|++++++.|.+.+.
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHHH
Confidence 8999999999999999999988773
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=5.5e-20 Score=168.12 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=110.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|||||||+|+|++.....+++.+++|.+..... .+.++.+|||||+...... ......... ...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~-~~~ 96 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVS-KKERMLWKR-LVE 96 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCC-HHHHHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCC-hhhHHHHHH-HHH
Confidence 34799999999999999999999998777788888887764432 2457899999997643000 000011111 122
Q ss_pred hhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc---------cccc-cCCCceEEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK---------NINY-KNNIANIYLS 370 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~---------~~~~-~~~~~~i~vS 370 (472)
........+|++++|+|++...... ....++.. .+.|+++|+||+|+.+... .... ...++++++|
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 2333345679999999998763322 22233333 3789999999999976542 1111 2346899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 175 a~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 175 SVTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHhh
Confidence 9999999999999998764
No 114
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=1.6e-20 Score=171.71 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=106.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|++..+.. ...+ | .+.....+.+++. .+.+|||||...+ .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~-t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~------- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESP-E-GGRFKKEIVVDGQSYLLLIRDEGGPPEL-------Q------- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCT-T-CEEEEEEEEETTEEEEEEEEECSSSCCH-------H-------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCC-C-cceEEEEEEECCEEEEEEEEECCCChhh-------h-------
Confidence 45899999999999999999999887642 2222 3 3444567777774 5677999998776 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC---C--CCCCEEEEEecCCCCcCcc---------cccccCC-Cc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF---P--MNIPVIYVWNKIDYSGHQK---------NINYKNN-IA 365 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l---~--~~~piivV~NK~Dl~~~~~---------~~~~~~~-~~ 365 (472)
+++.+|++++|+|++++.++.....++..+ . .+.|+++|+||+|+..... .+.+..+ .+
T Consensus 82 ------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~ 155 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCT 155 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCE
T ss_pred ------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCe
Confidence 456799999999999876555333333322 1 4689999999999953211 2333444 78
Q ss_pred eEEEEeccCccHHHHHHHHHHHhh
Q psy9409 366 NIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 366 ~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++++||++|.|++++++.|.+.+.
T Consensus 156 ~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 156 YYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998774
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=2e-21 Score=175.95 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=100.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|.+..+. ..+.+|+.+.....+.+++ ..+.+|||||...+ .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~------- 70 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY-------N------- 70 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTT-------T-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh-------h-------
Confidence 4589999999999999999999987653 3444444443333333343 45679999998776 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-----------------ccc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----------------NIN 359 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-----------------~~~ 359 (472)
.....+++.+|++++|+|++++.++. .|...++....+.|+++|+||+|+.+... .+.
T Consensus 71 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 -RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp -TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred -hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 22445778999999999999875543 23333333235899999999999865432 122
Q ss_pred ccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 360 YKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 360 ~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+..+. +++++||++|.|++++++.|.+.+.
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33454 8999999999999999999988763
No 116
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=1.6e-20 Score=195.27 Aligned_cols=164 Identities=26% Similarity=0.410 Sum_probs=115.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|+||||||||+|+|++..+..+++.+|+|++.....+.++|.++.+|||||++..... .....+.....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~---~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRV---EPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC--------------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCcccccc---chhhHHHHHHH
Confidence 457999999999999999999999998889999999999998999999999999999998654100 00111221122
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------------cccccCCCceEEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------------NINYKNNIANIYL 369 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------------~~~~~~~~~~i~v 369 (472)
++..++..+|++++|+|++.+.+.. ...+...+ ..+.|+++|+||+|+..... .+....+.+++++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~-~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 3345677899999999999864433 22222222 25789999999999976432 1122345789999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||++|.|+++|++.+.+.+..
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987743
No 117
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=2e-20 Score=173.27 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=108.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.+||+++|.+|||||||+|+|.+..+.. ...|+++.+.. ..+.+++ ..+.+|||||...+ .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~-------~-------- 87 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDY-------D-------- 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGG-------T--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEE-EEEEECCEEEEEEEEECCCchhH-------H--------
Confidence 4799999999999999999999887642 33344444432 3456666 47899999998765 1
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-------------------cc
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------------------NI 358 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-------------------~~ 358 (472)
.....+++.+|++++|+|++++.++. .|...++....+.|+++|+||+|+..... .+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 12334788999999999999864443 23333333335899999999999976521 11
Q ss_pred cccCCC-ceEEEEeccCccHHHHHHHHHHHh
Q psy9409 359 NYKNNI-ANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 359 ~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+..+. +++++||++|.|++++++.|.+.+
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 223354 799999999999999999998865
No 118
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.83 E-value=6.4e-21 Score=174.63 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=104.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceeccc-------Cceee--eEEEEEE-Ee--CCeeEEEEeCCCCCccccccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI-------AGTTR--DKITKTI-QI--NKFLFKITDTAGIPDINSKIK 290 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~-------~gtt~--d~~~~~~-~~--~~~~i~liDTpG~~~~~~~~~ 290 (472)
..+||+++|++|||||||+|.+.+......... ...|. +.....+ .+ ....+.+|||||...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 87 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY----- 87 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-----
Confidence 347999999999999999998877554321110 11122 1111111 12 2357899999998876
Q ss_pred cchhHHHHHhHHhhhcccccccEEEEEEeCCCCC------CchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc-----
Q psy9409 291 KNINEVEKIGIERTWVELKNSDIIIYVQDARYDK------HTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK----- 356 (472)
Q Consensus 291 ~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~------~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~----- 356 (472)
... ...+++.+|++|+|+|++++. ++.....++..+ ..+.|+++|+||+|+.+...
T Consensus 88 --~~~--------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 157 (198)
T 3t1o_A 88 --NAS--------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVR 157 (198)
T ss_dssp --SHH--------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHH
T ss_pred --HHH--------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHH
Confidence 222 334778999999999999542 222333344443 26789999999999976532
Q ss_pred cccccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 NINYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+..++ +++++||++|.|+++++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 23344567 8999999999999999999998874
No 119
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.1e-20 Score=173.65 Aligned_cols=151 Identities=26% Similarity=0.273 Sum_probs=107.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...++|+++|++|||||||+|+|++..+.. ...+ +..+.....+..++ ..+.+|||||...+ ..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~----- 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQF-------PA----- 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSC-------HH-----
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccC-ccccceeEEEEECCEEEEEEEEeCCChHHh-------HH-----
Confidence 346899999999999999999999876542 2222 22233333444544 47899999998776 22
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhC-C--CCCCEEEEEecCCCCcCcc------cccccCCCceE
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNF-P--MNIPVIYVWNKIDYSGHQK------NINYKNNIANI 367 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l-~--~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i 367 (472)
....++..+|++++|+|++++.++. .|...+... . .+.|+++|+||+|+..... .+....+++++
T Consensus 72 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 72 ---MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp ---HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE
T ss_pred ---HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE
Confidence 1233567799999999999864433 222222222 1 4689999999999976432 22334567899
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|+++++++|.+.+.
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCS
T ss_pred EEecCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 120
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.2e-20 Score=172.03 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=108.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+. ..+..|+.+.....+.+++ ..+.+|||||....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------------- 89 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT--------------- 89 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCcc---------------
Confidence 4689999999999999999999988764 2333343344445566665 56899999997652
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-------cccccCCCceEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIY 368 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l-~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~ 368 (472)
.....+++.+|++++|+|++++.++. ++..+.... ..+.|+++|+||+|+..... .+.+..++++++
T Consensus 90 -~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 168 (196)
T 2atv_A 90 -IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYE 168 (196)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEE
T ss_pred -cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEE
Confidence 01234567899999999999875544 223333322 25789999999999976432 233345788999
Q ss_pred EEeccCc-cHHHHHHHHHHHhh
Q psy9409 369 LSASKRI-GINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~g~-gi~~L~~~l~~~~~ 389 (472)
+||++|. |+++++++|.+.+.
T Consensus 169 ~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 169 CSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp CCTTTCTTCHHHHHHHHHHHHH
T ss_pred ECCCcCCcCHHHHHHHHHHHHH
Confidence 9999999 99999999998874
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.3e-20 Score=175.62 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=112.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+++|.+..+. ..+.+|+.+.....+.+++ ..+.+|||||+..+ ..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~------ 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY-------SR------ 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC-------CC------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHH-------HH------
Confidence 3479999999999999999999987763 4455555555556666665 57899999998876 21
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc---------------ccccc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK---------------NINYK 361 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~---------------~~~~~ 361 (472)
....+++.+|++|+|+|++++.++. .|...+.....+.|+++|+||+|+..... .+.+.
T Consensus 73 --~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 73 --LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp ----CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred --HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 2334788999999999999875543 23333333235899999999999975421 12233
Q ss_pred CCC-ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 362 NNI-ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 362 ~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+. +++++||++|.|++++++.|.+.+..
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 151 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 454 89999999999999999999998853
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.82 E-value=1.3e-19 Score=183.30 Aligned_cols=160 Identities=27% Similarity=0.378 Sum_probs=117.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
...++|+++|++|||||||+|+|++... .+.+.+++|.+.....+..++..+.+|||||+..... .....++..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~-- 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI---SERNEIEKQ-- 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS---TTSCHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccch---hhhhHHHHH--
Confidence 3567999999999999999999999885 4578889999888888888889999999999876400 001122221
Q ss_pred HhhhcccccccEEEEEEeCCCCC--Cch----HHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDK--HTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~--~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~~~~~~~i~vS 370 (472)
........+|++++|+|++++. +.. ++..+.... .+.|+++|+||+|+..... .+....+.+++++|
T Consensus 239 -~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 239 -AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp -HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred -HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEe
Confidence 1223445699999999998764 223 222232222 3899999999999976432 12223567899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|++|.|+++++++|.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 123
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.82 E-value=2e-20 Score=170.54 Aligned_cols=149 Identities=18% Similarity=0.162 Sum_probs=106.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|.+..+. ..+..|..+.....+.+++ ..+.+|||||...+ .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~------- 69 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------D------- 69 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-------T-------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh-------h-------
Confidence 3479999999999999999999987764 2223333333344555554 57899999998765 1
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCc-----------c--------c
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQ-----------K--------N 357 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~-----------~--------~ 357 (472)
.....+++.+|++++|+|++++.++. .|...++....+.|+++|+||+|+.... . .
T Consensus 70 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 70 -NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred -hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 12334678999999999999875543 2333333333689999999999997531 0 1
Q ss_pred ccccCC-CceEEEEec-cCccHHHHHHHHHHHh
Q psy9409 358 INYKNN-IANIYLSAS-KRIGINLLRNTLLDLI 388 (472)
Q Consensus 358 ~~~~~~-~~~i~vSA~-~g~gi~~L~~~l~~~~ 388 (472)
+.+..+ .+++++||+ +|.|++++++.+.+.+
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 222334 689999999 6899999999998875
No 124
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=184.42 Aligned_cols=149 Identities=16% Similarity=0.197 Sum_probs=109.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
+..+||+|+|.+|||||||+|+|.+..+. ...| |.+.....+...+..+.||||||...+ ..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------- 224 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RP------- 224 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC------------CC-------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhH-------HH-------
Confidence 45689999999999999999999998864 3344 555556677888999999999997766 22
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHH----HHHHhCC-CCCCEEEEEecCCCCcCcc--cc--------cccCCCce
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDK----KIIKNFP-MNIPVIYVWNKIDYSGHQK--NI--------NYKNNIAN 366 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~----~il~~l~-~~~piivV~NK~Dl~~~~~--~~--------~~~~~~~~ 366 (472)
....+++.+|++|+|+|++++.++.... .++.... .+.|+++|+||+|+..... .+ ....++++
T Consensus 225 -~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 225 -LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp -SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEE
T ss_pred -HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEE
Confidence 1334678899999999999887765333 2322211 4789999999999986542 11 12235679
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+++||++|.|++++++.|.+.+.
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 125
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=2.7e-20 Score=171.60 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEE-eCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQ-INKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
...+||+++|.+|||||||+|++.+......+.....+.......+. .....+.+|||||...+ .....
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~--- 87 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------FDPTF--- 87 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------TCTTC---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHH-------Hhhhh---
Confidence 45689999999999999999999886443211111222222222222 23478999999998875 11110
Q ss_pred HHhhhcccccccEEEEEEeCCCC--CCchHHHHHHHhC---CCCCCEEEEEecCCCCcCcc--------------cccc-
Q psy9409 301 IERTWVELKNSDIIIYVQDARYD--KHTDFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK--------------NINY- 360 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~--~~~~~~~~il~~l---~~~~piivV~NK~Dl~~~~~--------------~~~~- 360 (472)
....+++.+|++|+|+|+++. .....+..++..+ ..+.|+++|+||+|+..... .+.+
T Consensus 88 --~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 88 --DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp --CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 003467789999999999986 2223444444433 36899999999999875321 1222
Q ss_pred ---cCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 361 ---KNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 361 ---~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
..+++++++||++ .|++++++.|.+.+
T Consensus 166 ~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 GLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 4567899999999 99999999998764
No 126
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=5.4e-20 Score=194.12 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=113.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|.+|||||||+|+|++.++. ...| |.+.....+.+++.++.+|||||...+ . .
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~--------~ 381 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKI-------R--------P 381 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEESSSCEEEEEEECCCGGG-------S--------G
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccceeEEEEEeCCEEEEEEECCCcHHH-------H--------H
Confidence 4579999999999999999999988853 3333 556666778889999999999998776 2 1
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC-CCCCEEEEEecCCCCcCcc--ccc--------ccCCCceE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP-MNIPVIYVWNKIDYSGHQK--NIN--------YKNNIANI 367 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~-~~~piivV~NK~Dl~~~~~--~~~--------~~~~~~~i 367 (472)
....+++.+|++|+|+|++++.++... ..+++... .++|+++|+||+|+..... .+. ...+++++
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEE
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEE
Confidence 245678999999999999997665533 33332211 5789999999999976432 111 12345699
Q ss_pred EEEeccCccHHHHHHHHHHHhhc
Q psy9409 368 YLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
++||++|.|+++++++|.+.+..
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998854
No 127
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.81 E-value=1.6e-19 Score=179.54 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=116.9
Q ss_pred hhhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeE--EEEeCCCCCccccccccchhHHH
Q psy9409 220 LIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLF--KITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 220 ~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i--~liDTpG~~~~~~~~~~~~~~~e 297 (472)
..+..++|+++|.+|||||||+|++.+..+. ..+.+|+.+.....+.+++..+ .+|||||...+
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------ 216 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY------------ 216 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG------------
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhh------------
Confidence 3567799999999999999999999987663 5666777777777788887655 49999998776
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCchH----HHHHHHhCCCCCCEEEEEecCCCCcCcc-----------------
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDF----DKKIIKNFPMNIPVIYVWNKIDYSGHQK----------------- 356 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~----~~~il~~l~~~~piivV~NK~Dl~~~~~----------------- 356 (472)
......+++.+|++++|+|++++.++.. |...+.....+.|+++|+||+|+.....
T Consensus 217 ---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 217 ---DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp ---TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred ---hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 1224457889999999999998755432 3333333335899999999999965421
Q ss_pred --cccccCCC-ceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 --NINYKNNI-ANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 --~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+..+. +++++||++|.|++++++.|.+.+.
T Consensus 294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 12233455 8999999999999999999998764
No 128
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=8.5e-20 Score=170.31 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=102.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---CeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---KFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
..+||+++|++|||||||+|+|++..+. ..+++++.+... +.++ +..+.+|||||+..+ ...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~-------~~~---- 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL-------RFQ---- 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH-------HHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCChhH-------HHH----
Confidence 4589999999999999999999988753 445555555443 5565 678999999998765 221
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCC-ch----HHHHHHHh---CCCCCCEEEEEecCCCCcCccc--------------
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKH-TD----FDKKIIKN---FPMNIPVIYVWNKIDYSGHQKN-------------- 357 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~-~~----~~~~il~~---l~~~~piivV~NK~Dl~~~~~~-------------- 357 (472)
....+++.+|++|+|+|+++... .. +|..++.. ...+.|+++|+||+|+......
T Consensus 71 ---~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~ 147 (214)
T 2fh5_B 71 ---LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTL 147 (214)
T ss_dssp ---HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHH
Confidence 12235788999999999987421 11 33333332 2357899999999999765310
Q ss_pred -------------------c--------cc-cC--CCceEEEEeccC------ccHHHHHHHHHHH
Q psy9409 358 -------------------I--------NY-KN--NIANIYLSASKR------IGINLLRNTLLDL 387 (472)
Q Consensus 358 -------------------~--------~~-~~--~~~~i~vSA~~g------~gi~~L~~~l~~~ 387 (472)
. +. .. +++++++||++| .|+++++++|.+.
T Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 00 11 567999999999 9999999999875
No 129
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.81 E-value=5.2e-20 Score=171.52 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=106.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..+||+++|++|||||||+|+|.+..+. ..+..|..+.....+.+++ ..+.+|||||...+ ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~------ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------DN------ 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-------TT------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-------hH------
Confidence 3479999999999999999999998764 2222333333344555554 57899999998765 11
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch----HHHHHHHhCCCCCCEEEEEecCCCCcCc-----------c--------c
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD----FDKKIIKNFPMNIPVIYVWNKIDYSGHQ-----------K--------N 357 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~----~~~~il~~l~~~~piivV~NK~Dl~~~~-----------~--------~ 357 (472)
....+++.+|++|+|+|++++.++. .|...++....+.|+++|+||+|+.... . .
T Consensus 92 --~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 92 --VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp --TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred --HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 2334678999999999999875443 2323333323679999999999997531 0 1
Q ss_pred ccccCC-CceEEEEec-cCccHHHHHHHHHHHh
Q psy9409 358 INYKNN-IANIYLSAS-KRIGINLLRNTLLDLI 388 (472)
Q Consensus 358 ~~~~~~-~~~i~vSA~-~g~gi~~L~~~l~~~~ 388 (472)
+.+..+ .+++++||+ +|.|++++++.|.+.+
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 222334 689999999 6899999999998865
No 130
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=2e-21 Score=180.22 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=109.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
++.+||+++|++|||||||+|+|++..+. .....|+.+.....+.+++. .+.+|||||...+ .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~------ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------D------ 92 (204)
Confidence 34589999999999999999999987663 44455665555555555554 5669999998776 2
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCchHHH-HHHHhC---CCCCCEEEEEecCCCCcCcc-------------------
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDK-KIIKNF---PMNIPVIYVWNKIDYSGHQK------------------- 356 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~-~il~~l---~~~~piivV~NK~Dl~~~~~------------------- 356 (472)
.....+++.+|++++|+|++++.++.... .++..+ ..+.|+++|+||+|+.....
T Consensus 93 --~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 93 --RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 22344678899999999999876554332 333333 23789999999999976421
Q ss_pred cccccCCC-ceEEEEeccCccHHHHHHHHHHHh
Q psy9409 357 NINYKNNI-ANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 357 ~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+.+..+. +++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 12223344 899999999999999999987653
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=3e-20 Score=194.04 Aligned_cols=158 Identities=25% Similarity=0.377 Sum_probs=103.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
..+|+|+|.||||||||+|+|++...+.+.+.||+|++.....+.+.+..+.+|||||+... .+.+.......
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~-------~~~~~~~~~~~ 95 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG-------DEPFLAQIRQQ 95 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------------CCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc-------chHHHHHHHHH
Confidence 36899999999999999999999998888999999999999988889999999999998753 22222222344
Q ss_pred hhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcccccc---cCCCceEEEEeccCccHHH
Q psy9409 304 TWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQKNINY---KNNIANIYLSASKRIGINL 379 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~~~~~---~~~~~~i~vSA~~g~gi~~ 379 (472)
+..+++.+|++|+|+|+..+.. .....+.+.+ ..++|+++|+||+|+........+ ....+++++||++|.|+.+
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~-~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVT-AADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSC-HHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HHhhHhhCCEEEEEEeCCCCCC-hHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHH
Confidence 6667889999999999887532 2223333333 257999999999998765432221 1123568999999999999
Q ss_pred HHHHHHHHhh
Q psy9409 380 LRNTLLDLIE 389 (472)
Q Consensus 380 L~~~l~~~~~ 389 (472)
|++.+.+.+.
T Consensus 175 L~~~i~~~l~ 184 (456)
T 4dcu_A 175 LLDAVAEHFK 184 (456)
T ss_dssp HHHHHHTTGG
T ss_pred HHHHHHhhcc
Confidence 9999988764
No 132
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=9.7e-20 Score=180.47 Aligned_cols=154 Identities=15% Similarity=0.161 Sum_probs=116.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
.+||+++|++|||||||+|+|++.....+++.+++|.+.....+.+ ++..+.+|||||+..+ . +.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~---~~~~~~ 72 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------M---ENYFTK 72 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------H---HHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------h---hhhhhh
Confidence 4799999999999999999999986666678899999888888776 6789999999997654 1 111122
Q ss_pred hhhcccccccEEEEEEeCCCCCCchH---HHHHHHhC---CCCCCEEEEEecCCCCc--Ccc-----------cccccCC
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNF---PMNIPVIYVWNKIDYSG--HQK-----------NINYKNN 363 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l---~~~~piivV~NK~Dl~~--~~~-----------~~~~~~~ 363 (472)
....+++.+|++|+|+|++++.++.. |..++..+ .++.|+++|+||+|+.. ... .+.+..+
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 34556789999999999999866552 33333332 35899999999999986 221 2333444
Q ss_pred ---CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 364 ---IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 364 ---~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
++++++||++ .|+.+++..+.+.+
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 6899999999 78888888877654
No 133
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.79 E-value=1e-19 Score=166.09 Aligned_cols=151 Identities=19% Similarity=0.251 Sum_probs=100.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceec-ccCceeeeEEEEEEEe-----CCeeEEEEeCCCCCccccccccchhHHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVT-SIAGTTRDKITKTIQI-----NKFLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~-~~~gtt~d~~~~~~~~-----~~~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
.+||+++|++|||||||+|+|++......+ ..++++.+.....+.+ ....+.+|||||+..+ ..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~--- 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF-------YS--- 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH-------HT---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH-------HH---
Confidence 379999999999999999999986422223 2344445554444433 3568999999997665 11
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCC-CchH---H-HHHHHhCCCCCCEEEEEecCCCCcCcc----------cccccC
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDK-HTDF---D-KKIIKNFPMNIPVIYVWNKIDYSGHQK----------NINYKN 362 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~-~~~~---~-~~il~~l~~~~piivV~NK~Dl~~~~~----------~~~~~~ 362 (472)
....++..+|++++|+|.+++. ++.. | ..+... ..+.|+++|+||+|+..... .+.+..
T Consensus 72 -----~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T 2zej_A 72 -----THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKR 145 (184)
T ss_dssp -----TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCT
T ss_pred -----hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhc
Confidence 1233566799999999998862 3332 2 222222 25789999999999975432 233334
Q ss_pred CCc----eEEEEeccCc-cHHHHHHHHHHHhhc
Q psy9409 363 NIA----NIYLSASKRI-GINLLRNTLLDLIEK 390 (472)
Q Consensus 363 ~~~----~i~vSA~~g~-gi~~L~~~l~~~~~~ 390 (472)
+++ ++++||++|. |+++|++.|.+.+..
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 565 8999999996 999999999888753
No 134
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=3.1e-19 Score=172.19 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCc-eeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-TTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-tt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..++|+|+|++|||||||+|+|++.....++..++ +|++.....+.+++..+.||||||+.++.. ..........
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~----~~~~~~~~i~ 96 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD----HCEALYKEVQ 96 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSC----CCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCC----CHHHHHHHHH
Confidence 45899999999999999999999988666556665 788888888899999999999999887611 0111111112
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCC--CCCEEEEEe-cCCCCcCcc-c------------ccccCC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPM--NIPVIYVWN-KIDYSGHQK-N------------INYKNN 363 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~--~~piivV~N-K~Dl~~~~~-~------------~~~~~~ 363 (472)
......++.+|++|+|+|++...... .+..+.+.+.. ..|.++|+| |+|+..... . +.+..+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 23345678999999999998632222 22222222221 457777777 999975421 0 111111
Q ss_pred -----CceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 364 -----IANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 364 -----~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
...+++||++|.|++++++.|.+.+..
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 112789999999999999999998854
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=2.8e-20 Score=186.58 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=116.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHhHHh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIGIER 303 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~ 303 (472)
.+|+++|.||||||||+|+|++.... +++++++|.+.....+.+++ ..+.+|||||+.+. ......+ ...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~-------a~~~~~l-~~~ 229 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG-------AHQGVGL-GHQ 229 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHH-------TTCTTTT-HHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCccc-------ccccchh-HHH
Confidence 57999999999999999999988765 48899999888777888875 78999999997653 1111111 112
Q ss_pred hhcccccccEEEEEEeCCC---CCCchH---HHHHHHhCC---CCCCEEEEEecCCCCcCcc---cccccCC--CceEEE
Q psy9409 304 TWVELKNSDIIIYVQDARY---DKHTDF---DKKIIKNFP---MNIPVIYVWNKIDYSGHQK---NINYKNN--IANIYL 369 (472)
Q Consensus 304 ~~~~~~~aD~il~v~D~s~---~~~~~~---~~~il~~l~---~~~piivV~NK~Dl~~~~~---~~~~~~~--~~~i~v 369 (472)
.+..+..+|++|+|+|+++ ..+... |...+.... ..+|+++|+||+|+..... .+.+... .+++++
T Consensus 230 fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp HHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCC
T ss_pred HHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence 3344567999999999987 444432 333333332 4789999999999986533 2333333 689999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||+++.|+++|++.|.+.+..
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTS
T ss_pred ECCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999999854
No 136
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=2.3e-18 Score=169.17 Aligned_cols=165 Identities=19% Similarity=0.179 Sum_probs=107.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc-----eecccCc----------------------eeeeE-------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA-----IVTSIAG----------------------TTRDK------------- 262 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~-----~v~~~~g----------------------tt~d~------------- 262 (472)
..++|+++|.+|||||||+|+|++.++. .++..|+ +|++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998875 4555665 34331
Q ss_pred ----------EEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEE-EEEeCCCCCCchHHH
Q psy9409 263 ----------ITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIII-YVQDARYDKHTDFDK 330 (472)
Q Consensus 263 ----------~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il-~v~D~s~~~~~~~~~ 330 (472)
....+.. ++..+.||||||+..... ...+.+ .+.........+++.++.++ +|+|+++......+.
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPV-GDQPPD-IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCC-SSSCTT-HHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcC-CCCCch-HHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 1111111 246899999999875300 000122 11111233455677777665 799998753333333
Q ss_pred HHHHhCC-CCCCEEEEEecCCCCcCccc----ccc---c--CC-CceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 331 KIIKNFP-MNIPVIYVWNKIDYSGHQKN----INY---K--NN-IANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 331 ~il~~l~-~~~piivV~NK~Dl~~~~~~----~~~---~--~~-~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+++.+. .+.|+++|+||+|+.+.... +.. . .+ .+++++||++|.|++++++.|.+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 4555543 57899999999999765331 111 1 12 36889999999999999999988653
No 137
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.76 E-value=2e-18 Score=159.42 Aligned_cols=150 Identities=25% Similarity=0.205 Sum_probs=109.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|++..+.. ...|..+.+.....+.++|. .+.+|||||...+ ..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~-------~~------- 69 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY-------RR------- 69 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT-------TC-------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhh-------hh-------
Confidence 3799999999999999999999987653 34455556666677888875 5678999997765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---H-HHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---D-KKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~-~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++++|+|+++..++.. | ..+........|+++|+||+|+..... .+....+++++.+|
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~S 148 (199)
T 2f9l_A 70 -ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETS 148 (199)
T ss_dssp -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEe
Confidence 12235567999999999987644332 2 222222235789999999999975332 23344667899999
Q ss_pred eccCccHHHHHHHHHHHhh
Q psy9409 371 ASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~~ 389 (472)
|+++.|++++++.|.+.+.
T Consensus 149 al~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999874
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.76 E-value=1.1e-18 Score=158.90 Aligned_cols=160 Identities=24% Similarity=0.291 Sum_probs=102.7
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~ 304 (472)
+||+++|++|||||||+|+|++..+. ++..|++|.+.....+ . .+.+|||||+...........+..... ....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDE-IVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHH-HHHH
Confidence 68999999999999999999998864 4777888877654433 3 789999999754300000001111111 1111
Q ss_pred hcc-cccccEEEEEEeCCCCCCc-hHHH---------HHHHhC-CCCCCEEEEEecCCCCcCcc----cccccCCC----
Q psy9409 305 WVE-LKNSDIIIYVQDARYDKHT-DFDK---------KIIKNF-PMNIPVIYVWNKIDYSGHQK----NINYKNNI---- 364 (472)
Q Consensus 305 ~~~-~~~aD~il~v~D~s~~~~~-~~~~---------~il~~l-~~~~piivV~NK~Dl~~~~~----~~~~~~~~---- 364 (472)
... ...++++++|+|.++.... ..|. .+...+ ..+.|+++|+||+|+..... .+.+..+.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 155 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 155 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence 122 4456677777776542111 1221 122222 25789999999999987542 23333333
Q ss_pred ---ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 365 ---ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 365 ---~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+++++||++|.|++++++.|.+.+..
T Consensus 156 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 156 IDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 47999999999999999999998753
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=1.3e-18 Score=169.51 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=97.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecc-------cCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccccchhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTS-------IAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIKKNINE 295 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~-------~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~ 295 (472)
++|+++|.+|+|||||+|+|++.+...... .++++.+.....+..++. ++.+|||||+.+...........
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 689999999999999999999887765433 445556665566655663 89999999996541100000111
Q ss_pred H-------HH-----HhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------c
Q psy9409 296 V-------EK-----IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------N 357 (472)
Q Consensus 296 ~-------e~-----~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~ 357 (472)
. +. .++.+....-.++|+++++++.+..........+++.+..++|+++|+||+|+..... .
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~ 168 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQ 168 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHH
Confidence 1 11 0011111122348899999988765445555666666656899999999999975432 1
Q ss_pred c---cccCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 358 I---NYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 358 ~---~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+ ....+++++++||+++.|++++++.|.+.++.
T Consensus 169 i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 169 IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 1 11356789999999999999999999998754
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=162.80 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=105.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccC--ceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA--GTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~--gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
..++|+++|++|||||||+|+|++..+.. +..+ ++|.+.....+.+++..+.||||||+.+.. .+........
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~----~~~~~~~~~~ 102 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE----VPNAETSKEI 102 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC---------CHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC----CCHHHHHHHH
Confidence 45799999999999999999999988743 4445 788888888899999999999999988651 1112222211
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCC--CCCCEEEEEecCCCCcCcc-------------cccccCC
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFP--MNIPVIYVWNKIDYSGHQK-------------NINYKNN 363 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~--~~~piivV~NK~Dl~~~~~-------------~~~~~~~ 363 (472)
........+.+|++|+|+|++...... ++..+.+.+. ...|+++|+||+|+..... .+.+..+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 223344567899999999998653322 2333332221 2459999999999875432 1112334
Q ss_pred CceEEEEecc-----CccHHHHHHHHHHHhhc
Q psy9409 364 IANIYLSASK-----RIGINLLRNTLLDLIEK 390 (472)
Q Consensus 364 ~~~i~vSA~~-----g~gi~~L~~~l~~~~~~ 390 (472)
..++.++... +.++.+|++.+.+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 5566666553 36888888888777743
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.76 E-value=2.2e-18 Score=165.32 Aligned_cols=162 Identities=16% Similarity=0.115 Sum_probs=108.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccC-ceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHH-HHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-GTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEV-EKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~-e~~ 299 (472)
...++|+++|.+|||||||+|+|++.....+...+ ++|++.....+.+++..+.||||||+.+. .... +..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~-------~~~~~~~~ 91 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS-------QVSKTDPG 91 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST-------THHHHSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC-------CCCcHHHH
Confidence 34589999999999999999999999887644433 58888888888999999999999999765 2221 110
Q ss_pred --hH-HhhhcccccccEEEEEEeCCCCCCch-H-HHHHHHhCC---CCCCEEEEEecCCCCcCcc-------------cc
Q psy9409 300 --GI-ERTWVELKNSDIIIYVQDARYDKHTD-F-DKKIIKNFP---MNIPVIYVWNKIDYSGHQK-------------NI 358 (472)
Q Consensus 300 --~i-~~~~~~~~~aD~il~v~D~s~~~~~~-~-~~~il~~l~---~~~piivV~NK~Dl~~~~~-------------~~ 358 (472)
.+ .........+|++|+|+|++.....+ . +..+.+.+. .+.|+++|.||+|+..... .+
T Consensus 92 ~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l 171 (247)
T 3lxw_A 92 CEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALREL 171 (247)
T ss_dssp SHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHH
Confidence 01 11123348999999999998642221 2 222222222 2679999999999975421 12
Q ss_pred cccCCCceEEEEecc-----CccHHHHHHHHHHHhhc
Q psy9409 359 NYKNNIANIYLSASK-----RIGINLLRNTLLDLIEK 390 (472)
Q Consensus 359 ~~~~~~~~i~vSA~~-----g~gi~~L~~~l~~~~~~ 390 (472)
.+..+..++.+++.. +.|+++|++.|.+.+..
T Consensus 172 ~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 172 VAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 223455677666544 68999999999998864
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=4e-18 Score=176.93 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=106.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceec------------------------------ccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT------------------------------SIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~------------------------------~~~gtt~d~~~~~~~~~~ 271 (472)
+..++|+++|++|+|||||+|+|++....+.. ..+|+|.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 35589999999999999999999765332211 236889999888899999
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc------hHHHHHHHhC-CCCCC-EE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT------DFDKKIIKNF-PMNIP-VI 343 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~------~~~~~il~~l-~~~~p-ii 343 (472)
..+.||||||+.++ .......+..+|++|+|+|++++... ..+.+.+..+ ..+.| ++
T Consensus 95 ~~~~iiDTPGh~~f---------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 95 KHFTILDAPGHKSF---------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 159 (439)
T ss_pred eEEEEEECCChHHH---------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEE
Confidence 99999999998877 34455577889999999999986321 1222222222 24566 99
Q ss_pred EEEecCCCCcCcc----------cc---ccc------CCCceEEEEeccCccHHHHHH
Q psy9409 344 YVWNKIDYSGHQK----------NI---NYK------NNIANIYLSASKRIGINLLRN 382 (472)
Q Consensus 344 vV~NK~Dl~~~~~----------~~---~~~------~~~~~i~vSA~~g~gi~~L~~ 382 (472)
+|+||+|+..... .+ .+. ...+++++||++|.|++++.+
T Consensus 160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999999964211 11 111 145799999999999999655
No 143
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=9.6e-19 Score=186.25 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=101.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEE------EEEe----CCeeEEEEeCCCCCcccccccc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITK------TIQI----NKFLFKITDTAGIPDINSKIKK 291 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~------~~~~----~~~~i~liDTpG~~~~~~~~~~ 291 (472)
...+||+++|.+|||||||+|+|++..+.. ...++...+.... .+.+ .+..+.+|||||...+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~------ 111 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP-KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM------ 111 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTT------
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHH------
Confidence 345899999999999999999999987641 2222222332221 1111 2578999999997766
Q ss_pred chhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCC
Q psy9409 292 NINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNI 364 (472)
Q Consensus 292 ~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~ 364 (472)
.. ....+++++|++|+|+|+++.+....|...+.....+.|+++|+||+|+..... ......+.
T Consensus 112 -~~--------~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 112 -HA--------SHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN 182 (535)
T ss_dssp -TT--------TCHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT
T ss_pred -HH--------HHHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC
Confidence 11 123356779999999999876444455555555446799999999999976443 12234467
Q ss_pred ceEEEEeccCccHHHHHHHHHHHhhcc
Q psy9409 365 ANIYLSASKRIGINLLRNTLLDLIEKT 391 (472)
Q Consensus 365 ~~i~vSA~~g~gi~~L~~~l~~~~~~~ 391 (472)
+++++||++|.|++++++.|.+.+...
T Consensus 183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 183 RFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 899999999999999999999988543
No 144
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=1.8e-18 Score=174.77 Aligned_cols=176 Identities=21% Similarity=0.190 Sum_probs=116.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhh------CCCcceecccCceee-------eEE----------E---------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAGTTR-------DKI----------T--------------- 264 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~gtt~-------d~~----------~--------------- 264 (472)
..++|+++|+||+|||||+++|. +.....+...|+++. +.. .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45689999999999999999986 334444444433332 000 0
Q ss_pred -------EEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC
Q psy9409 265 -------KTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP 337 (472)
Q Consensus 265 -------~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~ 337 (472)
..+...+++++||||||+... .. ..+..+|++++|+|++.......+. ..+
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~-------~~-----------~~~~~aD~vl~V~d~~~~~~~~~l~---~~~- 215 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS-------EV-----------AVANMVDTFVLLTLARTGDQLQGIK---KGV- 215 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH-------HH-----------HHHTTCSEEEEEEESSTTCTTTTCC---TTS-
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH-------HH-----------HHHHhCCEEEEEECCCCCccHHHHH---HhH-
Confidence 001225688999999998765 11 1247899999999987653322111 111
Q ss_pred CCCCEEEEEecCCCCcCcc------cccc----------cCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCcccc
Q psy9409 338 MNIPVIYVWNKIDYSGHQK------NINY----------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLA 401 (472)
Q Consensus 338 ~~~piivV~NK~Dl~~~~~------~~~~----------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~~ 401 (472)
...|+++|+||+|+..... .+.. .++.|++++||++|.|+++|++.|.+.+..... ..+..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~---~~~~~ 292 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTG---AGEFD 292 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHH---TTHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhc---CchHH
Confidence 3468999999999975432 1111 125789999999999999999999998864322 22455
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q psy9409 402 RERHIHSLNEANYYLSCAIKII 423 (472)
Q Consensus 402 ~~r~~~~l~~~~~~l~~~~~~~ 423 (472)
..|+.+.+..+.+.+.+.+...
T Consensus 293 ~~r~~~~~~~~~e~i~e~l~~~ 314 (355)
T 3p32_A 293 ARRRDQQVDWTWQLVRDAVLDR 314 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887766543
No 145
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.3e-18 Score=170.39 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHH------hhhCC-CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEE
Q psy9409 194 KNDFFNELIKIKKKLLKIIQQGKKRA------LIRNG-LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKT 266 (472)
Q Consensus 194 ~~~l~~~l~~l~~~l~~~~~~~~~~~------~~~~~-~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~ 266 (472)
...++.++.++++++....+....+. ..+.| .+|+|+|.||||||||+|+|++... .++++|+||++.....
T Consensus 35 ~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~ 113 (376)
T 4a9a_A 35 LGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGV 113 (376)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEE
Confidence 45778888888888765433322111 12333 4899999999999999999999874 5699999999999999
Q ss_pred EEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC-chHHHHHHHhCC---CCCCE
Q psy9409 267 IQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH-TDFDKKIIKNFP---MNIPV 342 (472)
Q Consensus 267 ~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~-~~~~~~il~~l~---~~~pi 342 (472)
+.+.+.++.|+||||+... ....+..+ .+....++.||++++|+|++++.. .+.....+.... ..+|.
T Consensus 114 ~~~~~~~i~l~D~pGl~~~-------a~~~~~~g-~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~ 185 (376)
T 4a9a_A 114 IRYKGAKIQMLDLPGIIDG-------AKDGRGRG-KQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPP 185 (376)
T ss_dssp EEETTEEEEEEECGGGCCC------------CHH-HHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCC
T ss_pred EEeCCcEEEEEeCCCccCC-------chhhhHHH-HHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCCh
Confidence 9999999999999999865 22223332 456677889999999999997521 111222222221 35667
Q ss_pred EEEEecCCC
Q psy9409 343 IYVWNKIDY 351 (472)
Q Consensus 343 ivV~NK~Dl 351 (472)
++++||+|.
T Consensus 186 ~i~~nK~d~ 194 (376)
T 4a9a_A 186 DILIKKKEK 194 (376)
T ss_dssp CEEEEECSS
T ss_pred hhhhhHhhh
Confidence 777788775
No 146
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.73 E-value=1.2e-17 Score=153.41 Aligned_cols=149 Identities=24% Similarity=0.212 Sum_probs=110.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCee--EEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL--FKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
.++|+++|++|||||||+|+|.+..+.. ...|+.+.+.....+.++|.. +.+|||||+..+ ..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~-------~~------- 93 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY-------RA------- 93 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS-------SC-------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcch-------hh-------
Confidence 3799999999999999999999987653 455666667777788888865 457999998765 11
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchH---HH-HHHHhCCCCCCEEEEEecCCCCcCcc-------cccccCCCceEEEE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDF---DK-KIIKNFPMNIPVIYVWNKIDYSGHQK-------NINYKNNIANIYLS 370 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~---~~-~il~~l~~~~piivV~NK~Dl~~~~~-------~~~~~~~~~~i~vS 370 (472)
....+++.+|++++|+|.++..+++. |. .+.+......|+++|+||+|+..... .+....+..++.+|
T Consensus 94 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~S 172 (191)
T 1oix_A 94 -ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETS 172 (191)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 12335677899999999987644332 22 22222335789999999999975322 23344567899999
Q ss_pred eccCccHHHHHHHHHHHh
Q psy9409 371 ASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 371 A~~g~gi~~L~~~l~~~~ 388 (472)
|+++.|++++++.|.+.+
T Consensus 173 ald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=3.4e-19 Score=188.02 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=115.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGI 301 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i 301 (472)
..++|+++|++|+|||||+|+|.+..+.. ...+++|.+.....+.+ ++..+.||||||+..+ .
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f---------------~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF---------------S 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT---------------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH---------------H
Confidence 45789999999999999999999887764 56788888876666666 5678999999999887 2
Q ss_pred HhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cc------cccC--CCceE
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NI------NYKN--NIANI 367 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~------~~~~--~~~~i 367 (472)
......+..+|++|+|+|++++... .+.+.+..+ ..+.|+++|+||+|+..... .+ ...+ ..+++
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~-qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMK-QTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAV 145 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCH-HHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEEC
T ss_pred HHHHHHHccCCEEEEEEECCCCccH-HHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEE
Confidence 2344577889999999999987433 333333332 46789999999999975432 11 1111 34799
Q ss_pred EEEeccCccHHHHHHHHHHHhh
Q psy9409 368 YLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 368 ~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
++||++|.|+++|++.|...+.
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCchhHHHHHHHhhh
Confidence 9999999999999999998864
No 148
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=5.3e-17 Score=163.90 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=102.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc-----eecccCc----------------------eeee--------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA-----IVTSIAG----------------------TTRD-------------- 261 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~-----~v~~~~g----------------------tt~d-------------- 261 (472)
+.++|+++|.+|||||||+|+|++.++. +++..|+ +|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998875 4555565 3322
Q ss_pred ---------EEEEEEE-eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccc-cccEEEEEEeCCCCCCchHHH
Q psy9409 262 ---------KITKTIQ-INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELK-NSDIIIYVQDARYDKHTDFDK 330 (472)
Q Consensus 262 ---------~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~-~aD~il~v~D~s~~~~~~~~~ 330 (472)
.....+. .++..+.||||||+..... ...+.+..+.. -.....++. ..+++++|+|++.......+.
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPV-GDQPPDIEFQI-RDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCC-TTCCTTHHHHH-HHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCcc-CCCchhHHHHH-HHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 0011111 1246899999999876310 00112221221 112333443 456777777776542223344
Q ss_pred HHHHhCC-CCCCEEEEEecCCCCcCccc---c-cc-----cCC-CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 331 KIIKNFP-MNIPVIYVWNKIDYSGHQKN---I-NY-----KNN-IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 331 ~il~~l~-~~~piivV~NK~Dl~~~~~~---~-~~-----~~~-~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+++.+. .+.|+++|+||+|+.+.... + .. ..+ .+++++||++|.|++++++.+.+.-
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~ 256 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 256 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHH
Confidence 4555543 67899999999999765331 1 11 112 3578899999999999999998743
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.73 E-value=5.8e-18 Score=179.12 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=85.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcce---------------ec------ccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAI---------------VT------SIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~---------------v~------~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
-.+|+|+|++|+|||||+|+|+.....+ +. ..+|+|.......+.++++.+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 3589999999999999999997221111 11 13567777777788899999999999999
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~ 355 (472)
.++ . ..+..+++.+|++|+|+|++++.... ...++..+ ..+.|+++|+||+|+....
T Consensus 93 ~df-------~--------~~~~~~l~~aD~allVvDa~~g~~~~-t~~~~~~~~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 93 ADF-------T--------EDTYRTLTAVDSALMVIDAAKGVEPR-TIKLMEVCRLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp TTC-------C--------HHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHHTTTCCEEEEEECTTSCCSC
T ss_pred hhH-------H--------HHHHHHHHhCCEEEEEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 987 2 23455788999999999999874433 22222222 3678999999999997543
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=8.1e-18 Score=172.86 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=104.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeE--------------EEEEE-----EeCCeeEEEEeCCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK--------------ITKTI-----QINKFLFKITDTAGI 282 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~--------------~~~~~-----~~~~~~i~liDTpG~ 282 (472)
...++|+++|++|+|||||+|+|++........++.++... ..... ......+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 35689999999999999999999986432211111111100 00000 011257999999998
Q ss_pred CccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHH---HHHhCCCCCCEEEEEecCCCCcCcc---
Q psy9409 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNFPMNIPVIYVWNKIDYSGHQK--- 356 (472)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~---il~~l~~~~piivV~NK~Dl~~~~~--- 356 (472)
.++ .......+..+|++|+|+|++++.+.....+ +++.+ ...|+++|+||+|+.+...
T Consensus 86 ~~~---------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~ 149 (403)
T 3sjy_A 86 EVL---------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALS 149 (403)
T ss_dssp GGG---------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHH
T ss_pred HHH---------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHH
Confidence 877 3345556788999999999998754443333 33333 3368999999999986542
Q ss_pred ---cccc------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 357 ---NINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 357 ---~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.+.+ ..+.+++++||++|.|+++|++.|.+.+..
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 1111 125789999999999999999999997743
No 151
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.72 E-value=5.9e-18 Score=170.06 Aligned_cols=176 Identities=20% Similarity=0.186 Sum_probs=115.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhh------CCCcceecccCceeee--------------------EEEE----------
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAGTTRD--------------------KITK---------- 265 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~gtt~d--------------------~~~~---------- 265 (472)
..+..|+++|++|+|||||+|.|. +.+..+++..++++.. .+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 456789999999999999999996 4555556665654431 0000
Q ss_pred ---------EEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC
Q psy9409 266 ---------TIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF 336 (472)
Q Consensus 266 ---------~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l 336 (472)
.+.+.+++++||||||+.+. ... ....+|++++|+|++.+..........
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~-------~~~-----------~~~~aD~vl~Vvd~~~~~~~~~l~~~~--- 192 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS-------ETE-----------VARMVDCFISLQIAGGGDDLQGIKKGL--- 192 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH-------HHH-----------HHTTCSEEEEEECC------CCCCHHH---
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch-------HHH-----------HHHhCCEEEEEEeCCccHHHHHHHHhh---
Confidence 00145789999999998875 222 236899999999997653211100000
Q ss_pred CCCCCEEEEEecCCCCcCcc------cccc-----c-----CCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCccc
Q psy9409 337 PMNIPVIYVWNKIDYSGHQK------NINY-----K-----NNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYL 400 (472)
Q Consensus 337 ~~~~piivV~NK~Dl~~~~~------~~~~-----~-----~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~~~ 400 (472)
.+.|.++|+||+|+..... .+.. . +..+++++||++|.|+++|++.|.+.+.... + +...
T Consensus 193 -~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~--~-~~~~ 268 (341)
T 2p67_A 193 -MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT--A-SGRL 268 (341)
T ss_dssp -HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHH--H-TTHH
T ss_pred -hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHH--h-CChH
Confidence 1457899999999976421 1111 0 1356899999999999999999999875321 1 1244
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q psy9409 401 ARERHIHSLNEANYYLSCAIKI 422 (472)
Q Consensus 401 ~~~r~~~~l~~~~~~l~~~~~~ 422 (472)
.+.|+.+.+..+.+.+++.+..
T Consensus 269 ~~~r~~~~~~~~~e~i~e~l~~ 290 (341)
T 2p67_A 269 QQVRQQQSVEWLRKQTEEEVLN 290 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888776654
No 152
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=7.9e-18 Score=176.63 Aligned_cols=149 Identities=23% Similarity=0.329 Sum_probs=105.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCc------ceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDV------AIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~------~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
.++|+++|++|+|||||+|+|++.+. ......+|+|.+.....+.+++..+.+|||||+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~------------ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL------------ 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH------------
Confidence 47899999999999999999998761 223456788888777778889999999999998765
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------cc----cc---cC
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NI----NY---KN 362 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~----~~---~~ 362 (472)
.......+..+|++|+|+|++++...+ ....+++. .+.|+++|+||+|+.+... .+ .. ..
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 334555778999999999999852222 12223333 4688899999999986431 11 11 12
Q ss_pred CCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 363 NIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 363 ~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
+.+++++||++|.|+++|++.|.+.+.
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999999875
No 153
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=2.1e-18 Score=180.53 Aligned_cols=148 Identities=20% Similarity=0.245 Sum_probs=108.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|++|+|||||+++|.+..+. ....+|+|.+.....+.+++..+.||||||+..+ ..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f---------------~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAF---------------TS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC---------------TT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH---------------HH
Confidence 4578999999999999999999876543 2455677777665666678889999999999887 22
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----ccc------ccC--CCceEE
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NIN------YKN--NIANIY 368 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~------~~~--~~~~i~ 368 (472)
.....+..+|++++|+|++++...+ +.+.+..+ ..+.|+++|+||+|+..... .+. +.+ ..++++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~q-T~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQ-TIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVH 145 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTT-THHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHH-HHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEE
Confidence 2345678899999999998852222 11222211 25789999999999975421 111 112 268999
Q ss_pred EEeccCccHHHHHHHHHHH
Q psy9409 369 LSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 369 vSA~~g~gi~~L~~~l~~~ 387 (472)
+||++|.|+++|++.|...
T Consensus 146 vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCTTTCTTCTTHHHHTTTT
T ss_pred EeeeeccCcchhhhhhhhh
Confidence 9999999999999998764
No 154
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=1.3e-16 Score=158.00 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc-----ceecccC---ceeeeE-------------------------------
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV-----AIVTSIA---GTTRDK------------------------------- 262 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~-----~~v~~~~---gtt~d~------------------------------- 262 (472)
...++|+++|.+|||||||+|+|++..+ .+++..| .++++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3457999999999999999999999887 4455555 233320
Q ss_pred -------------------EEEE-EEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 263 -------------------ITKT-IQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 263 -------------------~~~~-~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
.... ...++..+.||||||+..... ...+ ..........+..++..+|++++|+|+++
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPV-GDQP-TDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC-----------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCC-CCCc-hhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0000 112456899999999875300 0000 11112223456678889999999999754
Q ss_pred CCCc-hHHHHHHHhCC-CCCCEEEEEecCCCCcCccc----ccc---cCCCceEEE---Eecc---CccHHHHHHHHHHH
Q psy9409 323 DKHT-DFDKKIIKNFP-MNIPVIYVWNKIDYSGHQKN----INY---KNNIANIYL---SASK---RIGINLLRNTLLDL 387 (472)
Q Consensus 323 ~~~~-~~~~~il~~l~-~~~piivV~NK~Dl~~~~~~----~~~---~~~~~~i~v---SA~~---g~gi~~L~~~l~~~ 387 (472)
.... ..+..+.+.+. .+.|+++|+||+|+...... +.. ..+.+++++ |+.+ +.|+.++++.+.+.
T Consensus 180 ~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp SCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 3222 22234444443 57899999999999865431 111 111345554 5566 78999999999988
Q ss_pred hhc
Q psy9409 388 IEK 390 (472)
Q Consensus 388 ~~~ 390 (472)
+..
T Consensus 260 ~~~ 262 (315)
T 1jwy_B 260 FKN 262 (315)
T ss_dssp HHT
T ss_pred HhC
Confidence 853
No 155
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.69 E-value=9e-18 Score=161.83 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=58.0
Q ss_pred cccEEEEEEeCCCC--CCchHHHHHHHhC-----CCCCCEEEEEecCCCCcCcc-----ccccc-CCCceEEEEeccCcc
Q psy9409 310 NSDIIIYVQDARYD--KHTDFDKKIIKNF-----PMNIPVIYVWNKIDYSGHQK-----NINYK-NNIANIYLSASKRIG 376 (472)
Q Consensus 310 ~aD~il~v~D~s~~--~~~~~~~~il~~l-----~~~~piivV~NK~Dl~~~~~-----~~~~~-~~~~~i~vSA~~g~g 376 (472)
++|++|+|+|++++ .+++....++..+ ..+.|+++|+||+|+..... .+... .+++++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999987 6665333332222 25789999999999965332 12222 467899999999999
Q ss_pred HHHHHHHHHHHh
Q psy9409 377 INLLRNTLLDLI 388 (472)
Q Consensus 377 i~~L~~~l~~~~ 388 (472)
++++++.|.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.69 E-value=5e-17 Score=173.93 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=100.0
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCccee--------------cccCceeeeEEEEEEEeC-----CeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIV--------------TSIAGTTRDKITKTIQIN-----KFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v--------------~~~~gtt~d~~~~~~~~~-----~~~i~liDTpG~~~~ 285 (472)
.+|+|+|++|+|||||+++|+.....+. ....|.|.......+.+. ++.+.||||||+.++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 4799999999999999999986322110 112355555444555553 368999999999887
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINY 360 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~ 360 (472)
... ....++.+|++|+|+|++++...+....+......+.|+++|+||+|+..... .+.+
T Consensus 85 -------~~e--------v~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~ 149 (599)
T 3cb4_D 85 -------SYE--------VSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIED 149 (599)
T ss_dssp -------HHH--------HHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHH
T ss_pred -------HHH--------HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHH
Confidence 333 33356789999999999987554433333322346789999999999986542 2333
Q ss_pred cCCC---ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 361 KNNI---ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 361 ~~~~---~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
..+. +++++||++|.|+++|++.|.+.+..
T Consensus 150 ~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 150 IVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 3343 59999999999999999999998854
No 157
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.6e-16 Score=163.39 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=97.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcce--ecccCceeeeEEEEEEEe---------------C--------CeeEEEE
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAI--VTSIAGTTRDKITKTIQI---------------N--------KFLFKIT 277 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~--v~~~~gtt~d~~~~~~~~---------------~--------~~~i~li 277 (472)
..++|+++|++++|||||+++|.+..... ....+|.|.+.......+ . ...+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999999754221 122356666543322222 1 1679999
Q ss_pred eCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHH---HHHHHhCCCCCCEEEEEecCCCCcC
Q psy9409 278 DTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 278 DTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~---~~il~~l~~~~piivV~NK~Dl~~~ 354 (472)
||||+.++ .......+..+|++|+|+|++++...... ..+++.+ ...|+++|+||+|+.+.
T Consensus 87 DtPGh~~f---------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 87 DSPGHETL---------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp ECSSHHHH---------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCT
T ss_pred ECCCHHHH---------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCH
Confidence 99997766 23344567789999999999976322211 1223333 23589999999999765
Q ss_pred cc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 355 QK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 355 ~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.. .+.+ ..+.+++++||++|.|+++|++.|.+.+..
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 42 1111 135789999999999999999999987753
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=3.3e-17 Score=168.41 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=108.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC--------Cccee--------cccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS--------DVAIV--------TSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~--------~~~~v--------~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+..++|+++|++|+|||||+|+|++. .+... ....|+|.+.....+...+..+.||||||+.++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34589999999999999999999873 11110 114577888777777778899999999999887
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK------- 356 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~------- 356 (472)
.......+..+|++|+|+|++++.. ....+++..+ ..+.| +++|+||+|+.....
T Consensus 89 ---------------~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~ 152 (405)
T 2c78_A 89 ---------------IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEM 152 (405)
T ss_dssp ---------------HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHH
Confidence 3334456789999999999998643 2222222222 14678 899999999985321
Q ss_pred c---ccccC-----CCceEEEEeccCcc------------------HHHHHHHHHHHhh
Q psy9409 357 N---INYKN-----NIANIYLSASKRIG------------------INLLRNTLLDLIE 389 (472)
Q Consensus 357 ~---~~~~~-----~~~~i~vSA~~g~g------------------i~~L~~~l~~~~~ 389 (472)
. +.... ..+++++||++|.| +.+|++.|.+.+.
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 1 11111 36899999999988 7788888877664
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.68 E-value=1.9e-17 Score=174.00 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=101.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcc------------------------------eecccCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVA------------------------------IVTSIAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~------------------------------~v~~~~gtt~d~~~~~~~~~~ 271 (472)
+..+||+++|++|+|||||+|+|++.... .....+|+|.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35589999999999999999999765211 122345788888888888899
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc------hHHHH---HHHhCCCCCCE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT------DFDKK---IIKNFPMNIPV 342 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~------~~~~~---il~~l~~~~pi 342 (472)
..+.||||||+.++ .......+..+|++|+|+|++++... .+..+ +...+ ...|+
T Consensus 111 ~~~~iiDTPG~~~f---------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~i 174 (483)
T 3p26_A 111 ANFTIVDAPGHRDF---------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNL 174 (483)
T ss_dssp CEEEEECCCCCGGG---------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCE
T ss_pred ceEEEEECCCcHHH---------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcE
Confidence 99999999999887 34455577889999999999986321 22222 22222 23579
Q ss_pred EEEEecCCCCcCcc--------ccccc--------CCCceEEEEeccCccHHHH
Q psy9409 343 IYVWNKIDYSGHQK--------NINYK--------NNIANIYLSASKRIGINLL 380 (472)
Q Consensus 343 ivV~NK~Dl~~~~~--------~~~~~--------~~~~~i~vSA~~g~gi~~L 380 (472)
++|+||+|+.+... .+... .+.+++++||++|.|++++
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 99999999986332 11110 1467999999999999864
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-17 Score=176.43 Aligned_cols=144 Identities=20% Similarity=0.248 Sum_probs=106.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecc------------------------------cCceeeeEEEEEEEeCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS------------------------------IAGTTRDKITKTIQINK 271 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~------------------------------~~gtt~d~~~~~~~~~~ 271 (472)
+..++|+++|++|+|||||+|+|++....+..+ .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 456899999999999999999999875543221 36889988888888899
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC------CchHHHHHHHhC-CCC-CCEE
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK------HTDFDKKIIKNF-PMN-IPVI 343 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~------~~~~~~~il~~l-~~~-~pii 343 (472)
..+.||||||+..+ .......+..+|++|+|+|++++. ....+.+.+..+ ..+ .|++
T Consensus 245 ~~~~iiDTPG~e~f---------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 245 ANFTIVDAPGHRDF---------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp CEEEEEECCSSSCH---------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEECCCCccc---------------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 99999999999887 455677889999999999998731 011222222211 223 4599
Q ss_pred EEEecCCCCcCcc--------cccc---c-----CCCceEEEEeccCccHHHH
Q psy9409 344 YVWNKIDYSGHQK--------NINY---K-----NNIANIYLSASKRIGINLL 380 (472)
Q Consensus 344 vV~NK~Dl~~~~~--------~~~~---~-----~~~~~i~vSA~~g~gi~~L 380 (472)
+|+||+|+.+... .+.. . .+.+++++||++|.|+.++
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999999986321 1111 1 1468999999999999876
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.68 E-value=7.1e-17 Score=165.51 Aligned_cols=152 Identities=17% Similarity=0.105 Sum_probs=107.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC-------cc--------eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD-------VA--------IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~-------~~--------~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
..++|+++|++|+|||||+++|++.. +. ......|.|.+.....+..++..+.||||||+.++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY-- 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence 34799999999999999999998731 00 01124577887766667777889999999998776
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCC-EEEEEecCCCCcCcc-------c-
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIP-VIYVWNKIDYSGHQK-------N- 357 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~p-iivV~NK~Dl~~~~~-------~- 357 (472)
.......+..+|++|+|+|+++....+ ..+.+..+ ..+.| +++|+||+|+..... .
T Consensus 80 -------------~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~ 145 (397)
T 1d2e_A 80 -------------VKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEI 145 (397)
T ss_dssp -------------HHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred -------------HHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHH
Confidence 233445678999999999999863322 22222211 14678 789999999985221 1
Q ss_pred --ccccC-----CCceEEEEeccCcc----------HHHHHHHHHHHhhc
Q psy9409 358 --INYKN-----NIANIYLSASKRIG----------INLLRNTLLDLIEK 390 (472)
Q Consensus 358 --~~~~~-----~~~~i~vSA~~g~g----------i~~L~~~l~~~~~~ 390 (472)
+.+.. ..+++++||++|.| +++|++.|.+.+..
T Consensus 146 ~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 11111 36899999999774 89999999887753
No 162
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.68 E-value=6.8e-17 Score=172.61 Aligned_cols=151 Identities=23% Similarity=0.251 Sum_probs=101.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcce--------ec------ccCceeeeEEEEEEEeC-----CeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI--------VT------SIAGTTRDKITKTIQIN-----KFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~--------v~------~~~gtt~d~~~~~~~~~-----~~~i~liDTpG~~~~ 285 (472)
.+|+|+|++|+|||||+++|+.....+ +. ...|.|.......+.+. .+.+.||||||+.++
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 589999999999999999998632111 00 11344443333344443 268899999999987
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----cccc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK-----NINY 360 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~-----~~~~ 360 (472)
...+ ...+..+|++|+|+|++++...+....+......+.|+++|+||+|+..... .+.+
T Consensus 87 -------~~ev--------~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~ 151 (600)
T 2ywe_A 87 -------SYEV--------SRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEE 151 (600)
T ss_dssp -------HHHH--------HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHH
T ss_pred -------HHHH--------HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHH
Confidence 3332 3356789999999999987544432222222236889999999999976542 2333
Q ss_pred cCCC---ceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 361 KNNI---ANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 361 ~~~~---~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
..+. +++++||++|.|+++|++.|.+.+..
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 3444 48999999999999999999998854
No 163
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=1.5e-16 Score=163.78 Aligned_cols=152 Identities=20% Similarity=0.172 Sum_probs=105.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcce--ecccCceeeeEEEEEEEe---------------C--------CeeEEEE
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAI--VTSIAGTTRDKITKTIQI---------------N--------KFLFKIT 277 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~--v~~~~gtt~d~~~~~~~~---------------~--------~~~i~li 277 (472)
..++|+++|++|+|||||+++|++..... ....+|+|.+.......+ . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34799999999999999999999754321 123456676544333322 1 1679999
Q ss_pred eCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHH---HHHHhCCCCCCEEEEEecCCCCcC
Q psy9409 278 DTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 278 DTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~---~il~~l~~~~piivV~NK~Dl~~~ 354 (472)
||||+.++ .......+..+|++|+|+|++++....... .+++.+ ...|+++|+||+|+.+.
T Consensus 89 DtPGh~~f---------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 89 DAPGHEAL---------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDK 152 (410)
T ss_dssp ECSSHHHH---------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCH
T ss_pred ECCChHHH---------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCH
Confidence 99997766 223445667899999999999763222111 122222 23589999999999865
Q ss_pred cc------cccc------cCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 355 QK------NINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 355 ~~------~~~~------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
.. .+.+ ..+.+++++||++|.|+++|+++|.+.+..
T Consensus 153 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 42 1111 135789999999999999999999987753
No 164
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.67 E-value=3.8e-17 Score=161.53 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchh-HHHHHhHHhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNIN-EVEKIGIERT 304 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~-~~e~~~i~~~ 304 (472)
||+++|..|||||||++++.+..........+.|.......+. ...++.+|||||+.++ .. .+ ..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf-------~~~~l------~~ 66 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNY-------FEPSY------DS 66 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSS-------CCCSH------HH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhc-------cchhh------hh
Confidence 6899999999999999998766433211112222222112222 3468999999999987 21 00 12
Q ss_pred hcccccccEEEEEEeCCCCCCc---hHHHHHHHhC---CCCCCEEEEEecCCCCcCcc--------------ccccc---
Q psy9409 305 WVELKNSDIIIYVQDARYDKHT---DFDKKIIKNF---PMNIPVIYVWNKIDYSGHQK--------------NINYK--- 361 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~---~~~~~il~~l---~~~~piivV~NK~Dl~~~~~--------------~~~~~--- 361 (472)
..++++++++|+|+|+++. .. .+|..++..+ .++.|+++|+||+|+..... .+++.
T Consensus 67 ~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~ 145 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD 145 (331)
T ss_dssp HHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCS
T ss_pred hhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccc
Confidence 3467899999999999987 32 3555555432 36899999999999986521 23332
Q ss_pred -CCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 362 -NNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 362 -~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
.+++++++||++ .++.+.|..+.+.+
T Consensus 146 ~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 146 GVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred ccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 467899999998 59999999887765
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.67 E-value=4.8e-18 Score=182.30 Aligned_cols=150 Identities=19% Similarity=0.262 Sum_probs=83.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCccee------------------------------cccCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIV------------------------------TSIAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v------------------------------~~~~gtt~d~~~~~~~~~~~ 272 (472)
..++|+++|++|+|||||+|+|++....++ ...+|+|.+.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 346899999999999999999975322211 12568899988888888889
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC--------Cch-HHHHHHHhCCCCCC-E
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK--------HTD-FDKKIIKNFPMNIP-V 342 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~--------~~~-~~~~il~~l~~~~p-i 342 (472)
.+.||||||+.++ +......+..+|++|+|+|++++. ... ....++.. .+.| +
T Consensus 256 ~i~iiDTPGh~~f---------------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~i 318 (592)
T 3mca_A 256 IYEIGDAPGHRDF---------------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEI 318 (592)
T ss_dssp ---CCEEESSSEE---------------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCE
T ss_pred EEEEEECCChHHH---------------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeE
Confidence 9999999999987 334556778899999999998642 111 22222332 3555 9
Q ss_pred EEEEecCCCCcCcc--------ccc----ccCC-----CceEEEEeccCccHH--------------HHHHHHHHHhh
Q psy9409 343 IYVWNKIDYSGHQK--------NIN----YKNN-----IANIYLSASKRIGIN--------------LLRNTLLDLIE 389 (472)
Q Consensus 343 ivV~NK~Dl~~~~~--------~~~----~~~~-----~~~i~vSA~~g~gi~--------------~L~~~l~~~~~ 389 (472)
|+|+||+|+..... .+. ...+ ++++++||++|.|+. .|++.|.....
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99999999976321 111 1123 369999999999998 78888776553
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=9.2e-17 Score=166.55 Aligned_cols=143 Identities=23% Similarity=0.223 Sum_probs=97.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCccee----------ccc----------------------CceeeeEEEEEEEeC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIV----------TSI----------------------AGTTRDKITKTIQIN 270 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v----------~~~----------------------~gtt~d~~~~~~~~~ 270 (472)
..++|+++|++|+|||||+|+|++....+. +.. .|.|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 447999999999999999999986542211 112 244555555666778
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEec
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNK 348 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK 348 (472)
+..+.||||||+.++ .. .....+..+|++|+|+|++++...+ .+..++..+ ...|+++|+||
T Consensus 103 ~~~~~iiDtpGh~~f-------~~--------~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~~iIvviNK 166 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------TR--------NMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIKHIVVAINK 166 (434)
T ss_dssp SEEEEEEECCCSGGG-------HH--------HHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEEEC
T ss_pred CceEEEEECCChHHH-------HH--------HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCCeEEEEEEc
Confidence 889999999998877 22 2334578999999999999864322 222333333 22369999999
Q ss_pred CCCCcCcc-----------cccccCC-----CceEEEEeccCccHHHHH
Q psy9409 349 IDYSGHQK-----------NINYKNN-----IANIYLSASKRIGINLLR 381 (472)
Q Consensus 349 ~Dl~~~~~-----------~~~~~~~-----~~~i~vSA~~g~gi~~L~ 381 (472)
+|+.+... .+.+..+ .+++++||++|.|+++++
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 99986321 1112233 579999999999999843
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.67 E-value=3.9e-16 Score=151.50 Aligned_cols=127 Identities=23% Similarity=0.343 Sum_probs=91.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|.+|+|||||+|+|++..+..+++.+++|.+.....+..++..+.+|||||+.++... .....+. +.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~---~~~~~~~--i~ 112 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI---NDMALNI--IK 112 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE---CHHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc---hHHHHHH--HH
Confidence 458999999999999999999999998778889999998888888889999999999999876110 0111111 21
Q ss_pred hhhcccccccEEEEEEeCCCCCCchHHHHHHHh----CCCC--CCEEEEEecCCCCcCc
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMN--IPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~----l~~~--~piivV~NK~Dl~~~~ 355 (472)
+ ......+|++|+|+|++..........+++. +... .|+++|+||+|+.+..
T Consensus 113 ~-~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 113 S-FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp H-HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred H-HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 1 1234579999999988764322222222222 2222 6999999999997544
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.67 E-value=1.6e-16 Score=161.10 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=102.8
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTW 305 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~ 305 (472)
+|+++|++|+|||||+|+|+ ..|+|.+.....+.+++..+.+|||||+.++ +....
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---------------~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---------------LKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC---------------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH---------------HHHHH
Confidence 89999999999999999998 4466777777778888889999999999987 33344
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCE-EEEEe-cCCCCcCcc------cccc---c---CCCceEE--
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPV-IYVWN-KIDYSGHQK------NINY---K---NNIANIY-- 368 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~pi-ivV~N-K~Dl~~~~~------~~~~---~---~~~~~i~-- 368 (472)
..+..+|++|+|+| +.. ......+.+..+ ..+.|. ++|+| |+|+ +... .+.+ . ...|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~ 155 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQG-LDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLN 155 (370)
T ss_dssp HHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECC
T ss_pred HHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 46688999999999 654 333222222221 135777 89999 9999 4321 1111 1 2368999
Q ss_pred EEecc---CccHHHHHHHHHHHhh
Q psy9409 369 LSASK---RIGINLLRNTLLDLIE 389 (472)
Q Consensus 369 vSA~~---g~gi~~L~~~l~~~~~ 389 (472)
+||++ |.|+++|++.|.+.+.
T Consensus 156 ~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 156 TNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred cccccCcCCCCHHHHHHHHHhhcc
Confidence 99999 9999999999988764
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=3.6e-17 Score=152.88 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=86.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCccee--cccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV--TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v--~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...++|+++|++|+|||||+|+|.+..+... +..++++.+. .+..+.+|||||+..+ ...+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~-------~~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKL-------RYKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGG-------THHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHH-------HHHHHHH
Confidence 3568999999999999999999998775321 2334444332 5678999999999876 3333221
Q ss_pred hHHhhhcccccccEEEEEEeCC-CCCCch----HHHHHHHh----CCCCCCEEEEEecCCCCcCcc-------------c
Q psy9409 300 GIERTWVELKNSDIIIYVQDAR-YDKHTD----FDKKIIKN----FPMNIPVIYVWNKIDYSGHQK-------------N 357 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s-~~~~~~----~~~~il~~----l~~~~piivV~NK~Dl~~~~~-------------~ 357 (472)
.......+|++|+|+|++ ++.++. ++..++.. ...+.|+++|+||+|+..... .
T Consensus 76 ----~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~ 151 (218)
T 1nrj_B 76 ----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK 151 (218)
T ss_dssp ----HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred ----HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHH
Confidence 111223489999999999 655554 33333332 236899999999999986543 1
Q ss_pred ccccCCCceEEEEeccCcc
Q psy9409 358 INYKNNIANIYLSASKRIG 376 (472)
Q Consensus 358 ~~~~~~~~~i~vSA~~g~g 376 (472)
+....+.+++++||++|.+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 152 VIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHhccccccccccccc
Confidence 1122345789999998865
No 170
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=9.6e-17 Score=164.12 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=50.9
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe---------------------C---CeeEEEEeCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI---------------------N---KFLFKITDTA 280 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~---------------------~---~~~i~liDTp 280 (472)
++|+|+|.||||||||+|+|++.. +.++++|+||++.......+ + ..++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 589999999999999999999988 66789999998876654321 2 2579999999
Q ss_pred CCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 281 G~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
|+... ....+.+ .......++.+|++++|+|+++.
T Consensus 80 G~~~~-------a~~~~~l-~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPG-------AHEGRGL-GNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -----------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccc-------hhhhhhH-HHHHHHHHhcCCEEEEEEecccc
Confidence 98754 1111221 13345678999999999999875
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=6.6e-16 Score=149.29 Aligned_cols=126 Identities=23% Similarity=0.326 Sum_probs=89.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHH
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIE 302 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~ 302 (472)
..++|+++|.+|+|||||+|+|++.+.+.+++.+++|.+.....+.+++..+.||||||+.++... .....+. +.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~---~~~~~~~--i~ 109 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV---NHQALEL--IK 109 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE---CHHHHHH--HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc---hHHHHHH--HH
Confidence 458999999999999999999999998777889999999888889999999999999999876111 0111111 11
Q ss_pred hhhcccccccEEEEEEeCCCCCCch---HHH-HHHHhCCC--CCCEEEEEecCCCCcC
Q psy9409 303 RTWVELKNSDIIIYVQDARYDKHTD---FDK-KIIKNFPM--NIPVIYVWNKIDYSGH 354 (472)
Q Consensus 303 ~~~~~~~~aD~il~v~D~s~~~~~~---~~~-~il~~l~~--~~piivV~NK~Dl~~~ 354 (472)
+.. ....+|++++|+|++...... .+. .+.+.+.. ..|+++|+||+|+.+.
T Consensus 110 ~~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 110 GFL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 121 234799999999887653332 222 22222222 2499999999999644
No 172
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-16 Score=145.62 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhCCCEEEEEecCCCchhHHHHhhhCCCcce--ecccCceeeeEEEEEEEeCCeeEE
Q psy9409 198 FNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI--VTSIAGTTRDKITKTIQINKFLFK 275 (472)
Q Consensus 198 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~--v~~~~gtt~d~~~~~~~~~~~~i~ 275 (472)
++.+..+.+.+..+......+. ....++|+++|++|||||||+|+|.+..+.. ++..++++.+. .+..+.
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~-~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 94 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGSGGG-GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVT 94 (193)
T ss_dssp TTBCHHHHHHHHHHC---------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCS
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEE
Confidence 3345555555555554443332 2466899999999999999999999877532 23334444332 567899
Q ss_pred EEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC-CCCCch----HHHHHHHh----CCCCCCEEEEE
Q psy9409 276 ITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR-YDKHTD----FDKKIIKN----FPMNIPVIYVW 346 (472)
Q Consensus 276 liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s-~~~~~~----~~~~il~~----l~~~~piivV~ 346 (472)
+|||||...+ ...+... ....+..+|++++|+|++ +..++. ++..++.. ...+.|+++|+
T Consensus 95 l~Dt~G~~~~-------~~~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 163 (193)
T 2ged_A 95 LVDFPGHVKL-------RYKLSDY----LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163 (193)
T ss_dssp EEEETTCCBS-------SCCHHHH----HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred EEECCCCchH-------HHHHHHH----HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence 9999998876 2222221 122335699999999999 543333 33333332 23589999999
Q ss_pred ecCCCCcCc
Q psy9409 347 NKIDYSGHQ 355 (472)
Q Consensus 347 NK~Dl~~~~ 355 (472)
||+|+....
T Consensus 164 nK~Dl~~~~ 172 (193)
T 2ged_A 164 NKSELFTAR 172 (193)
T ss_dssp ECTTSTTCC
T ss_pred EchHhcCCC
Confidence 999997643
No 173
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.63 E-value=2.7e-15 Score=163.36 Aligned_cols=164 Identities=18% Similarity=0.128 Sum_probs=104.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCc--------------------------------------------
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------------------------------------------- 257 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------------------------------------------- 257 (472)
.+-++|+++|.+|+|||||+|+|++.++..++..+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355799999999999999999999987632222111
Q ss_pred ------eeeeEEEEEEEe-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhccc-ccccEEEEEEeCCCCCCchHH
Q psy9409 258 ------TTRDKITKTIQI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVEL-KNSDIIIYVQDARYDKHTDFD 329 (472)
Q Consensus 258 ------tt~d~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~-~~aD~il~v~D~s~~~~~~~~ 329 (472)
.+.+.+...+.. +...++|+||||+..... ...|.+..+.++ .....++ ..+|++|+|+|++........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~-~~qp~di~~~i~-~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPV-GDQPPDIEFQIR-DMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCS-SCCCCHHHHHHH-HHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCC-CCCcHHHHHHHH-HHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 112222222222 334689999999987310 111222222211 1122222 679999999999976333333
Q ss_pred HHHHHhCC-CCCCEEEEEecCCCCcCccc---ccc--c----CC-CceEEEEeccCccHHHHHHHHHHH
Q psy9409 330 KKIIKNFP-MNIPVIYVWNKIDYSGHQKN---INY--K----NN-IANIYLSASKRIGINLLRNTLLDL 387 (472)
Q Consensus 330 ~~il~~l~-~~~piivV~NK~Dl~~~~~~---~~~--~----~~-~~~i~vSA~~g~gi~~L~~~l~~~ 387 (472)
..+++.+. .+.|+++|+||+|+.+.... +.. . .+ .+++++||++|.|+++|++.+.+.
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 34555553 57899999999999865431 111 1 12 367889999999999999999874
No 174
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.63 E-value=1.8e-16 Score=158.84 Aligned_cols=178 Identities=17% Similarity=0.159 Sum_probs=115.4
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhh------CCCcceecccCceeee---------------------------------
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAGTTRD--------------------------------- 261 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~gtt~d--------------------------------- 261 (472)
...+..|+|+|+||||||||+|.|. +.+..+++..+.+++.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 3466789999999999999999998 4555444444332221
Q ss_pred ----EEEE--EEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHh
Q psy9409 262 ----KITK--TIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN 335 (472)
Q Consensus 262 ----~~~~--~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~ 335 (472)
.... .+...+.+++|+||||+.+. ... ....+|++++|+|++.+.........+
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~-------~~~-----------v~~~~d~vl~v~d~~~~~~~~~i~~~i-- 191 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQS-------ETA-----------VADLTDFFLVLMLPGAGDELQGIKKGI-- 191 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSC-------HHH-----------HHTTSSEEEEEECSCC------CCTTH--
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcc-------hhh-----------HHhhCCEEEEEEcCCCcccHHHHHHHH--
Confidence 1000 02236789999999999875 222 125799999999986542111000000
Q ss_pred CCCCCCEEEEEecCCCCcCcc-------cccc----------cCCCceEEEEeccCccHHHHHHHHHHHhhccCCCCCCc
Q psy9409 336 FPMNIPVIYVWNKIDYSGHQK-------NINY----------KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSP 398 (472)
Q Consensus 336 l~~~~piivV~NK~Dl~~~~~-------~~~~----------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~~~~~~~~~ 398 (472)
...|.++|+||+|+..... .+.. .+..+++.+||++|.|+++|++.|.+....... .+
T Consensus 192 --~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~---~~ 266 (337)
T 2qm8_A 192 --FELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTA---TG 266 (337)
T ss_dssp --HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHH---TT
T ss_pred --hccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHh---Cc
Confidence 1235688889999754221 1111 114678999999999999999999998753211 22
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Q psy9409 399 YLARERHIHSLNEANYYLSCAIKII 423 (472)
Q Consensus 399 ~~~~~r~~~~l~~~~~~l~~~~~~~ 423 (472)
...+.|+.+.+..+.+.+.+.+...
T Consensus 267 ~~~~~r~~~~~~~~~~~i~~~~~~~ 291 (337)
T 2qm8_A 267 EIAGKRREQDVKWMWALVHERLHQR 291 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888877654
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.62 E-value=6.9e-15 Score=148.70 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=105.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceee-------------------------------------------
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR------------------------------------------- 260 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~------------------------------------------- 260 (472)
-++|+++|++|||||||+|+|++.++...+.. .+|+
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 35899999999999999999999876321111 1111
Q ss_pred -----------eEEEEEEE-eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC-ch
Q psy9409 261 -----------DKITKTIQ-INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH-TD 327 (472)
Q Consensus 261 -----------d~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~-~~ 327 (472)
+.....+. .....+.+|||||+...... ..+.+. .......+..++.++|++|+|+|.++... ..
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~-~q~~~~-~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVD-GQSDSI-VKDIENMVRSYIEKPNCIILAISPANQDLATS 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCT-TCCSSH-HHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcC-CCchhH-HHHHHHHHHHHhhcCCeEEEEeecccCCcCCH
Confidence 11111111 12457999999999875111 111222 22224456678899999999998765433 24
Q ss_pred HHHHHHHhCC-CCCCEEEEEecCCCCcCccc-------ccccCCCceEEEEeccCccHHHHHHHHHH
Q psy9409 328 FDKKIIKNFP-MNIPVIYVWNKIDYSGHQKN-------INYKNNIANIYLSASKRIGINLLRNTLLD 386 (472)
Q Consensus 328 ~~~~il~~l~-~~~piivV~NK~Dl~~~~~~-------~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 386 (472)
.|..+++.+. .+.|+++|+||+|+.+.... .....+.+++++|++++.++++.+.....
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 5667777764 56899999999999865431 12234678999999999999887655433
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2.2e-15 Score=139.67 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=98.5
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC-cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHH
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKI 299 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~-~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~ 299 (472)
...+.+|+++|++|||||||+|+|++.. ...+.+.+|+|.... .+.+++ .+.+|||||+...... ......+..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~-~~~~~~~~~- 97 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVP-EEMKRKWQR- 97 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC-------CCHHHHHH-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccC-HHHHHHHHH-
Confidence 3567899999999999999999999987 455567778877542 333444 7889999998643000 000011111
Q ss_pred hHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc------c---ccccC--CCce
Q psy9409 300 GIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK------N---INYKN--NIAN 366 (472)
Q Consensus 300 ~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~------~---~~~~~--~~~~ 366 (472)
.+.........+|.+++++|++.+.+.. ....++.. .+.|+++|+||+|+..... . +.... ...+
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 1222223346789999999998864432 12222322 4789999999999876421 1 11112 3467
Q ss_pred EEEEeccCccHHHHHHHHHHHhhc
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
+++||+++.|++++++.|.+.+..
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEEeecCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999988743
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.61 E-value=7.9e-17 Score=168.07 Aligned_cols=143 Identities=19% Similarity=0.195 Sum_probs=99.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC--c----------------------ceecc------cCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD--V----------------------AIVTS------IAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~--~----------------------~~v~~------~~gtt~d~~~~~~~~~~~ 272 (472)
..++|+++|++|+|||||+|+|++.. + +.+.+ ..|+|.+.....+..++.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34799999999999999999998641 1 01111 357788777777888889
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCC---c---hHHHHHHHhC-CCCCC-EEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKH---T---DFDKKIIKNF-PMNIP-VIY 344 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~---~---~~~~~il~~l-~~~~p-iiv 344 (472)
.+.||||||+.++ .......+..+|++|+|+|++++.. + ....+.+..+ ..+.| +++
T Consensus 86 ~~~iiDtPGh~~f---------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iiv 150 (458)
T 1f60_A 86 QVTVIDAPGHRDF---------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIV 150 (458)
T ss_dssp EEEEEECCCCTTH---------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCcHHH---------------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEE
Confidence 9999999998887 3334557889999999999986521 0 0122221111 13555 999
Q ss_pred EEecCCCCcCcc--------ccc---ccC-----CCceEEEEeccCccHHHH
Q psy9409 345 VWNKIDYSGHQK--------NIN---YKN-----NIANIYLSASKRIGINLL 380 (472)
Q Consensus 345 V~NK~Dl~~~~~--------~~~---~~~-----~~~~i~vSA~~g~gi~~L 380 (472)
|+||+|+.+... .+. ... ..+++++||++|.|+.++
T Consensus 151 viNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 151 AVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 999999984211 111 111 368999999999999754
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.61 E-value=3.1e-16 Score=162.61 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=93.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcce------------------------ec------ccCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAI------------------------VT------SIAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~------------------------v~------~~~gtt~d~~~~~~~~~~~ 272 (472)
..++|+++|++|+|||||+|+|++....+ +. ..+|+|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 34799999999999999999998641110 01 1467888887777888889
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-------HHHHHHHhCC-CC-CCEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-------FDKKIIKNFP-MN-IPVI 343 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-------~~~~il~~l~-~~-~pii 343 (472)
.+.||||||+.++ .......+..+|++|+|+|+++. +++ ...+.+..+. .+ .|++
T Consensus 85 ~~~iiDtpG~~~f---------------~~~~~~~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~~~~~ii 148 (435)
T 1jny_A 85 FFTIIDAPGHRDF---------------VKNMITGASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKTMGLDQLI 148 (435)
T ss_dssp EEEECCCSSSTTH---------------HHHHHHTSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHTTCTTCE
T ss_pred EEEEEECCCcHHH---------------HHHHHhhhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHHcCCCeEE
Confidence 9999999999887 22344578899999999999984 222 2222222111 23 4689
Q ss_pred EEEecCCCCcCc---c-------c---ccccC-----CCceEEEEeccCccHHHHH
Q psy9409 344 YVWNKIDYSGHQ---K-------N---INYKN-----NIANIYLSASKRIGINLLR 381 (472)
Q Consensus 344 vV~NK~Dl~~~~---~-------~---~~~~~-----~~~~i~vSA~~g~gi~~L~ 381 (472)
+|+||+|+.+.. . . +.... .++++++||++|.|+.+++
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999999998631 1 1 11112 2679999999999997543
No 179
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.60 E-value=1.1e-15 Score=163.65 Aligned_cols=147 Identities=22% Similarity=0.213 Sum_probs=98.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccC-ceeeeEEEEEEEe------------------CCeeEEEEeCCCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-GTTRDKITKTIQI------------------NKFLFKITDTAGIP 283 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-gtt~d~~~~~~~~------------------~~~~i~liDTpG~~ 283 (472)
..++|+++|++|+|||||+|+|++..+. ...+ +.|.+.......+ ....+.||||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3578999999999999999999976542 2222 3443322222221 11259999999998
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC---CchHHHHHHHhCCCCCCEEEEEecCCCCcCcc----
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK---HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK---- 356 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~---~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~---- 356 (472)
++ . ......++.+|++|+|+|++++- +...|..+ + ..+.|+++|+||+|+.....
T Consensus 82 ~F-------~--------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l-~--~~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 82 AF-------T--------TLRKRGGALADLAILIVDINEGFKPQTQEALNIL-R--MYRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CC-------T--------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH-H--HTTCCEEEEEECGGGSTTCCCCTT
T ss_pred HH-------H--------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH-H--HcCCeEEEEecccccccccccccC
Confidence 87 1 12334678899999999999852 22233322 2 25789999999999964210
Q ss_pred ---------------------------cccc--------------cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 ---------------------------NINY--------------KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ---------------------------~~~~--------------~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.+ ....|++++||++|.|+++|+++|...+.
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0000 11247999999999999999999987663
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=3.5e-15 Score=157.92 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=82.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcce---------------ec------ccCceeeeEEEEEEEeCCeeEEEEeCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAI---------------VT------SIAGTTRDKITKTIQINKFLFKITDTAG 281 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~---------------v~------~~~gtt~d~~~~~~~~~~~~i~liDTpG 281 (472)
+..+|+++|++|+|||||+|+|+.....+ +. ...|+|.+.....+.++++.+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 44799999999999999999998642111 11 1334455555566778899999999999
Q ss_pred CCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcC
Q psy9409 282 IPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 282 ~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~ 354 (472)
+.++ .. ....++..+|++|+|+|++++. ..+...+++.+. .+.|+++|+||+|+...
T Consensus 92 ~~df-------~~--------~~~~~l~~aD~~IlVvDa~~g~-~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDF-------SE--------DTYRTLTAVDCCLMVIDAAKGV-EDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTC-------CH--------HHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ChhH-------HH--------HHHHHHHHCCEEEEEEeCCccc-hHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 9887 22 2444678999999999999863 344444544433 57899999999999754
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=152.77 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceeccc--------CceeeeEEEEEEEeCCe--eEEEEeCCCCCcccccc---c
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI--------AGTTRDKITKTIQINKF--LFKITDTAGIPDINSKI---K 290 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~--------~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~---~ 290 (472)
.++|+++|++|+|||||+|+|++......... ++.+.+.....+..++. .+.+|||||+.+..... .
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 36899999999999999999887654332221 23333333333444554 68999999995431000 0
Q ss_pred cchhHHHHH---hHHhhhc----cc--ccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----
Q psy9409 291 KNINEVEKI---GIERTWV----EL--KNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK----- 356 (472)
Q Consensus 291 ~~~~~~e~~---~i~~~~~----~~--~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~----- 356 (472)
.-.+.++.. .+..... .+ .++|+++|+++.+..........+++.+..+.|+|+|+||+|+.....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k 196 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLK 196 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHH
Confidence 001111100 0111110 11 234678888876443333444567777777899999999999986542
Q ss_pred ----cccccCCCceEEEEeccCccHHHHHHHHHHHh
Q psy9409 357 ----NINYKNNIANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 357 ----~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
...+..+++++++||++|.| ++.+..+.+.+
T Consensus 197 ~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 197 KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 12234578999999999988 66555555544
No 182
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.59 E-value=8.2e-16 Score=160.74 Aligned_cols=144 Identities=18% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc------------------------ceecc------cCceeeeEEEEEEEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV------------------------AIVTS------IAGTTRDKITKTIQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~------------------------~~v~~------~~gtt~d~~~~~~~~~~~ 272 (472)
..++|+++|++|+|||||+++|+.... +.+.+ ..|+|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 447999999999999999999974211 01111 346777776667788899
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC---Cc---hHHHHHHHhC-CCCCC-EEE
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK---HT---DFDKKIIKNF-PMNIP-VIY 344 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~---~~---~~~~~il~~l-~~~~p-iiv 344 (472)
.+.||||||+.++ .......+..+|++|+|+|++++. ++ ..+.+.+..+ ..+.| +++
T Consensus 122 ~~~iiDtPGh~~f---------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iiv 186 (467)
T 1r5b_A 122 RFSLLDAPGHKGY---------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVV 186 (467)
T ss_dssp EEEECCCCC--------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEE
T ss_pred EEEEEECCCcHHH---------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEE
Confidence 9999999999887 233455678999999999999862 10 1222222221 24677 999
Q ss_pred EEecCCCCcCc---c----------cccccC-------CCceEEEEeccCccHHHHH
Q psy9409 345 VWNKIDYSGHQ---K----------NINYKN-------NIANIYLSASKRIGINLLR 381 (472)
Q Consensus 345 V~NK~Dl~~~~---~----------~~~~~~-------~~~~i~vSA~~g~gi~~L~ 381 (472)
|+||+|+.... . .+.... +++++++||++|.|+.+++
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99999996421 1 111111 3569999999999998865
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.58 E-value=2.4e-15 Score=154.21 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=112.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-eeEEEEeCCCCCccccccccchhHHHHHh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDINSKIKKNINEVEKIG 300 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-~~i~liDTpG~~~~~~~~~~~~~~~e~~~ 300 (472)
+.+..|+|+|++|||||||+|+|++.... +.+++.+|.+.....+.+++ ..+.++||||+.+. ......++
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-------a~~~~~L~ 226 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-------ASEGKGLG 226 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-------GGGSCCSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccc-------hhhhhhhh
Confidence 34467999999999999999999998764 57888888887777777775 78999999998653 11100000
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHH----HHHHHhCC--CCCCEEEEEecCCCCcCcc--cc---cccCCCceEEE
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFD----KKIIKNFP--MNIPVIYVWNKIDYSGHQK--NI---NYKNNIANIYL 369 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~----~~il~~l~--~~~piivV~NK~Dl~~~~~--~~---~~~~~~~~i~v 369 (472)
. .....+..+|.+++++|++ ......+ .++..... ...|.++|+||+|+..... .+ ....+.+++++
T Consensus 227 ~-~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~i 304 (416)
T 1udx_A 227 L-EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPV 304 (416)
T ss_dssp H-HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEC
T ss_pred H-HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEE
Confidence 0 1122356799999999998 3233222 22222111 3689999999999976521 11 12346789999
Q ss_pred EeccCccHHHHHHHHHHHhhc
Q psy9409 370 SASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 370 SA~~g~gi~~L~~~l~~~~~~ 390 (472)
||+++.|+++|++.|.+.+..
T Consensus 305 SA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 305 SALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred ECCCccCHHHHHHHHHHHHHh
Confidence 999999999999999999853
No 184
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.58 E-value=1.4e-15 Score=170.06 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=102.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC----------cc-----eecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcccc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD----------VA-----IVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINS 287 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~----------~~-----~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~ 287 (472)
..++|+++|++|+|||||+++|++.. .. ......|+|.+.....+..++..+.||||||+.++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH--
Confidence 45799999999999999999998631 00 01124566766655556667889999999998876
Q ss_pred ccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCC-EEEEEecCCCCcCcc-------c
Q psy9409 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIP-VIYVWNKIDYSGHQK-------N 357 (472)
Q Consensus 288 ~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~p-iivV~NK~Dl~~~~~-------~ 357 (472)
.......+..+|++|+|+|++++...+ .+..++.. .+.| +|+|+||+|+..... .
T Consensus 373 -------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eE 437 (1289)
T 3avx_A 373 -------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEME 437 (1289)
T ss_dssp -------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred -------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHH
Confidence 333455788999999999999863322 12222222 3678 789999999985321 1
Q ss_pred ---ccccC-----CCceEEEEeccC--------ccHHHHHHHHHHHhh
Q psy9409 358 ---INYKN-----NIANIYLSASKR--------IGINLLRNTLLDLIE 389 (472)
Q Consensus 358 ---~~~~~-----~~~~i~vSA~~g--------~gi~~L~~~l~~~~~ 389 (472)
+.+.. ..+++++||++| .|+++|++.|.+.+.
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 11111 368999999999 579999999988764
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.57 E-value=5e-15 Score=161.68 Aligned_cols=114 Identities=19% Similarity=0.142 Sum_probs=78.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcc-----------eecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVA-----------IVTS------IAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~-----------~v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~ 286 (472)
..+|+|+|++|+|||||+|+|+..... .+.+ ..++|.......+.++++.+.||||||+.++
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF- 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch-
Confidence 468999999999999999999832110 0111 3456666666677888999999999999887
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
... ...+++.+|++|+|+|+++..... .|..+. ..+.|+++|+||+|+....
T Consensus 91 ------~~~--------~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~---~~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 91 ------TIE--------VERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE---KYKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp ------HHH--------HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH---HTTCCEEEEEECTTSTTCC
T ss_pred ------HHH--------HHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH---HcCCCEEEEEECCCcccCC
Confidence 332 344667899999999999875433 233222 2578999999999997653
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=1.1e-14 Score=146.21 Aligned_cols=90 Identities=24% Similarity=0.333 Sum_probs=67.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-----------------eeEEEEeCCCCCccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----------------FLFKITDTAGIPDIN 286 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-----------------~~i~liDTpG~~~~~ 286 (472)
+++|+|+|.||||||||+|+|++.. ..++++|++|.+.....+.+.+ ..+.+|||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~- 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG- 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc-
Confidence 4789999999999999999999987 4568999999887766676665 46999999999876
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
....+.++ ...+..++.+|++++|+|+++
T Consensus 80 ------a~~~~gl~-~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ------ASKGEGLG-NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ------HHHHGGGT-CCHHHHHHTCSEEEEEEECSC
T ss_pred ------ccccchHH-HHHHHHHHhcCeEEEEEecCC
Confidence 33323322 233456789999999999986
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.54 E-value=6.4e-15 Score=160.89 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=79.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcc-----------eecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCccc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVA-----------IVTS------IAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~-----------~v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~ 286 (472)
-.+|+|+|++|+|||||+|+|++.... .+.+ .+++|.......+.+++..++||||||+.++
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df- 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF- 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch-
Confidence 368999999999999999999842111 1112 3466666666778888999999999999887
Q ss_pred cccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch---HHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD---FDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 287 ~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~---~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
... ...+++.+|++|+|+|++++.... .|..+. ..+.|+++|+||+|+....
T Consensus 89 ------~~~--------~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~---~~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 89 ------TVE--------VERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT---TYGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp ------CHH--------HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHH---HTTCCEEEEEECTTSTTCC
T ss_pred ------HHH--------HHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHH---HcCCCEEEEEECCCccccc
Confidence 333 334567799999999999864433 233222 2578999999999997653
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.53 E-value=4.8e-14 Score=154.18 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc-----------eecc------cCceeeeEEEEEEEeCC-------eeEEEEe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA-----------IVTS------IAGTTRDKITKTIQINK-------FLFKITD 278 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~-----------~v~~------~~gtt~d~~~~~~~~~~-------~~i~liD 278 (472)
.-.+|+|+|++|+|||||+++|+..... .+.+ ..+.|.......+.+++ +.+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3468999999999999999999753211 0111 24556665556677776 8999999
Q ss_pred CCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcC
Q psy9409 279 TAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 279 TpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~ 354 (472)
|||+.++ ... ....++.+|++|+|+|+++..... ...+++.+ ..+.|+++|+||+|+...
T Consensus 89 TPG~~df-------~~~--------~~~~l~~aD~aIlVvDa~~gv~~q-t~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDF-------TIE--------VERSMRVLDGAVMVYCAVGGVQPQ-SETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccch-------HHH--------HHHHHHHCCEEEEEEeCCCCCcHH-HHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9999887 332 334667899999999999864322 22222222 357899999999998764
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.51 E-value=2.1e-14 Score=156.22 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=81.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcce-----------ecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAI-----------VTS------IAGTTRDKITKTIQINKFLFKITDTAGIPD 284 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~-----------v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~ 284 (472)
..+.+|+|+|++|+|||||+++|++....+ +.+ ..+.|.......+.+.+..+.+|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 345689999999999999999998432210 011 124555555667778889999999999988
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCC
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYS 352 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~ 352 (472)
+ .. ....+++.+|++++|+|+++.. ......+++.+ ..+.|+++|+||+|+.
T Consensus 87 f-------~~--------~~~~~l~~ad~~ilVvD~~~g~-~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VG--------EIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp G-------HH--------HHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred h-------HH--------HHHHHHhhcCcEEEEEcCCccc-chhHHHHHHHHHHccCCEEEEecCCchh
Confidence 7 22 2444667899999999988763 23233333332 2578999999999987
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.3e-14 Score=135.74 Aligned_cols=145 Identities=10% Similarity=0.088 Sum_probs=92.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC-----CcceecccCceeeeE--------EEEEE------------------EeCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS-----DVAIVTSIAGTTRDK--------ITKTI------------------QINK 271 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~-----~~~~v~~~~gtt~d~--------~~~~~------------------~~~~ 271 (472)
...+|+++|.+|||||||+|+|++. ..+.+...++++.|. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4468999999999999999999864 233444444433211 00111 1134
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDY 351 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl 351 (472)
..+.+|||+|.... .. . +...++.+++|+|++.... ..+.. ... .+.|+++|+||+|+
T Consensus 109 ~d~iiidt~G~~~~-------~~---------~--~~~~~~~~i~vvd~~~~~~-~~~~~-~~~--~~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 109 CDLLLIENVGNLIC-------PV---------D--FDLGENYRVVMVSVTEGDD-VVEKH-PEI--FRVADLIVINKVAL 166 (221)
T ss_dssp CSEEEEEEEEBSSG-------GG---------G--CCCSCSEEEEEEEGGGCTT-HHHHC-HHH--HHTCSEEEEECGGG
T ss_pred CCEEEEeCCCCCCC-------Cc---------h--hccccCcEEEEEeCCCcch-hhhhh-hhh--hhcCCEEEEecccC
Confidence 56788888885222 00 0 1124688999999987632 22221 111 25789999999999
Q ss_pred CcCc--c--c----cccc-CCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 352 SGHQ--K--N----INYK-NNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 352 ~~~~--~--~----~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
.+.. . . +... ...+++++||++|.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 167 AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 6531 1 1 1111 2468999999999999999999998874
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.49 E-value=6.4e-14 Score=148.90 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=81.5
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce---------------ecc------cCceeeeEEEEEEEeCCeeEEEEeCCCCCc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI---------------VTS------IAGTTRDKITKTIQINKFLFKITDTAGIPD 284 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~---------------v~~------~~gtt~d~~~~~~~~~~~~i~liDTpG~~~ 284 (472)
+|+|+|+.++|||||..+|+...-.+ +.+ ..|.|.......+.|+++.++|+||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 79999999999999999997322110 111 224555555677889999999999999999
Q ss_pred cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc
Q psy9409 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 285 ~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~ 355 (472)
+ ..++++ .++-+|.+|+|+|+..+- ......+++.+ ..+.|.++++||+|....+
T Consensus 113 F-------~~Ev~r--------aL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 113 F-------SEDTYR--------VLTAVDSALVVIDAAKGV-EAQTRKLMDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp C-------SHHHHH--------HHHSCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCCEEEEEECTTSCCCC
T ss_pred H-------HHHHHH--------HHHhcCceEEEeecCCCc-ccccHHHHHHHHHhCCceEEEEecccchhcc
Confidence 9 555444 678899999999999873 33233333332 3789999999999987654
No 192
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.48 E-value=2e-13 Score=145.25 Aligned_cols=127 Identities=23% Similarity=0.120 Sum_probs=86.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc--eecccCceeeeEEEEE----------------------------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA--IVTSIAGTTRDKITKT---------------------------------- 266 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~--~v~~~~gtt~d~~~~~---------------------------------- 266 (472)
..++|+|+|.+|+|||||+|+|++.++. .+++.|+|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3479999999999999999999999875 5678887765321110
Q ss_pred --EEeCC---eeEEEEeCCCCCccccccccchhHHHHH--hHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-C
Q psy9409 267 --IQINK---FLFKITDTAGIPDINSKIKKNINEVEKI--GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-M 338 (472)
Q Consensus 267 --~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~e~~--~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~ 338 (472)
+.+.+ ..+.||||||+.... ...+... ....+..++..+|++|+|+|+++.........+++.+. .
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~------~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~ 217 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGA------KQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH 217 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC
T ss_pred eEEeccccccCCEEEEECcCCCCcc------hhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc
Confidence 00000 368999999987630 0011100 01223446778999999999988655555566666664 4
Q ss_pred CCCEEEEEecCCCCcCc
Q psy9409 339 NIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 339 ~~piivV~NK~Dl~~~~ 355 (472)
+.|+++|+||+|+....
T Consensus 218 ~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 218 EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGGEEEEEECGGGSCHH
T ss_pred CCCEEEEEECCCccCHH
Confidence 68999999999998654
No 193
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.46 E-value=7.2e-14 Score=141.11 Aligned_cols=89 Identities=27% Similarity=0.363 Sum_probs=65.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeC---------------------CeeEEEEeCCCCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---------------------KFLFKITDTAGIP 283 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~---------------------~~~i~liDTpG~~ 283 (472)
++|+|+|.||||||||+|+|++.. ..+.++|++|.+.......+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999875 345788888876555554432 3569999999998
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
.. ....+.++ ...+..++.+|++++|+|+++
T Consensus 81 ~~-------a~~~~~lg-~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KG-------AHKGEGLG-NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CC-------CCSSSCTT-HHHHHHHHTCSEEEEEEECCC
T ss_pred cc-------ccccchHH-HHHHHHHHhCCEEEEEEECCC
Confidence 75 11111111 234456789999999999986
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=1e-13 Score=136.61 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=80.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceeccc--------CceeeeEEEEEEEeCC--eeEEEEeCCCCCccccccccch
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI--------AGTTRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNI 293 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~--------~gtt~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~ 293 (472)
.++|+++|++|||||||+|+|.+......+.. ++...+.........+ ..+.+|||||+.........-.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 37899999999999999999988633222211 1111111111122222 4689999999843200000001
Q ss_pred hHHH---H---HhHHhh------hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc-----
Q psy9409 294 NEVE---K---IGIERT------WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK----- 356 (472)
Q Consensus 294 ~~~e---~---~~i~~~------~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~----- 356 (472)
...+ . ..+... .-....+++++++.+++.........++++.+....|+++|+||.|+.....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~ 177 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLK 177 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHH
Confidence 1111 0 001001 1122345667777776543122233456666656779999999999975432
Q ss_pred ----cccccCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 357 ----NINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 357 ----~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
...+..+++++++||++| |+++++..+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 178 KRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 123345789999999999 99999999888773
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=4.1e-13 Score=137.73 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=76.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecc------cCce-eeeEEEEEEEeCC--eeEEEEeCCCCCccccccccchhH
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTS------IAGT-TRDKITKTIQINK--FLFKITDTAGIPDINSKIKKNINE 295 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~------~~gt-t~d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 295 (472)
++|+|+|++|||||||+|.|++..+...+. .+.+ ..+.....+...+ ..+.+|||||+....... .....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~ 110 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQP 110 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------CHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccch-hhHHH
Confidence 589999999999999999999987632110 0111 1222222222223 268999999987641000 00001
Q ss_pred H--------HHHhH---Hhhhccccc--ccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------
Q psy9409 296 V--------EKIGI---ERTWVELKN--SDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------ 356 (472)
Q Consensus 296 ~--------e~~~i---~~~~~~~~~--aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------ 356 (472)
+ +.... ..+...+.+ +|++||+.+++..........+++.+..+.|+|+|+||+|+.....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~ 190 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKK 190 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHH
Confidence 1 11000 001223444 4566666666522122333456666666899999999999976432
Q ss_pred ---cccccCCCceEEEEeccCccHHHHHHHHHHHhhc
Q psy9409 357 ---NINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390 (472)
Q Consensus 357 ---~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 390 (472)
......+++++++|++++.++++++..+...+++
T Consensus 191 ~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 191 QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 1112347889999999999999999988887643
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=2.2e-13 Score=130.89 Aligned_cols=157 Identities=19% Similarity=0.293 Sum_probs=98.1
Q ss_pred CCEEEEEecCCCchhHHHHhhh-----CCCcceecccCcee----------------eeEEEEEE---------------
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLV-----GSDVAIVTSIAGTT----------------RDKITKTI--------------- 267 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~-----~~~~~~v~~~~gtt----------------~d~~~~~~--------------- 267 (472)
...+++.|.+|||||||++.|. +.+...++..++.+ ++......
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4568899999999999999998 77776666555421 11000000
Q ss_pred ----------Ee-CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCch-HHHH---H
Q psy9409 268 ----------QI-NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD-FDKK---I 332 (472)
Q Consensus 268 ----------~~-~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~-~~~~---i 332 (472)
.+ .++.++||||||..+. .. ....+. .....+.. +++++++|++...... .+.. .
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~-------~~-~~~l~~-~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMET-------FL-FHEFGV-RLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHH-------HH-HSHHHH-HHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccch-------hh-hhhhHH-HHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 00 1358999999998754 11 111111 11123466 9999999987543322 2211 1
Q ss_pred HHh-CCCCCCEEEEEecCCCCcCcc-----c-c----------------------------ccc-CCCceEEEEeccCcc
Q psy9409 333 IKN-FPMNIPVIYVWNKIDYSGHQK-----N-I----------------------------NYK-NNIANIYLSASKRIG 376 (472)
Q Consensus 333 l~~-l~~~~piivV~NK~Dl~~~~~-----~-~----------------------------~~~-~~~~~i~vSA~~g~g 376 (472)
... ...+.|+++|+||+|+..... . + .+. ...+++++||++|.|
T Consensus 164 ~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 164 LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc
Confidence 111 124689999999999975431 0 0 111 224799999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy9409 377 INLLRNTLLDLIEK 390 (472)
Q Consensus 377 i~~L~~~l~~~~~~ 390 (472)
+++|+++|.+.+..
T Consensus 244 i~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 244 FEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998754
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.34 E-value=1.7e-13 Score=148.36 Aligned_cols=149 Identities=26% Similarity=0.274 Sum_probs=106.7
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcc-----------eeccc------CceeeeEEEEEEEeCCeeEEEEeCCCCCccccc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVA-----------IVTSI------AGTTRDKITKTIQINKFLFKITDTAGIPDINSK 288 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~-----------~v~~~------~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~ 288 (472)
+|+|+|+.++|||||..+|+...-. .+.++ .|.|.......+.|+++.++|+||||+.++
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 6999999999999999999732111 11111 155655556677889999999999999999
Q ss_pred cccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cccc--
Q psy9409 289 IKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NINY-- 360 (472)
Q Consensus 289 ~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~~~-- 360 (472)
..+++. .++-+|.+|+|+|+..+-. .....+++.+ ..+.|.++++||+|....+. .+.+
T Consensus 81 ----~~Ev~r--------aL~~~DgavlVVDa~~GV~-~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l 147 (638)
T 3j25_A 81 ----LAEVYR--------SLSVLDGAILLISAKDGVQ-AQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKL 147 (638)
T ss_dssp ----HHHHHH--------HHTTCSEEECCEESSCTTC-SHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTT
T ss_pred ----HHHHHH--------HHHHhCEEEEEEeCCCCCc-HHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHh
Confidence 444443 6788999999999998732 2222333322 35789999999999865542 0000
Q ss_pred --------------------------------------------------------------cCCCceEEEEeccCccHH
Q psy9409 361 --------------------------------------------------------------KNNIANIYLSASKRIGIN 378 (472)
Q Consensus 361 --------------------------------------------------------------~~~~~~i~vSA~~g~gi~ 378 (472)
..-.|++..||+++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~ 227 (638)
T 3j25_A 148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID 227 (638)
T ss_dssp CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence 012477888999999999
Q ss_pred HHHHHHHHHhhc
Q psy9409 379 LLRNTLLDLIEK 390 (472)
Q Consensus 379 ~L~~~l~~~~~~ 390 (472)
.|++.+.+.+..
T Consensus 228 ~LLd~i~~~~p~ 239 (638)
T 3j25_A 228 NLIEVITNKFYS 239 (638)
T ss_dssp HHHHHHHHSCCC
T ss_pred hHhhhhhccccC
Confidence 999999998743
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.31 E-value=3.5e-12 Score=119.52 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCCEEEEEecCCCCcCcc----c----ccc-cCCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 339 NIPVIYVWNKIDYSGHQK----N----INY-KNNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 339 ~~piivV~NK~Dl~~~~~----~----~~~-~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..|.++|+||+|+.+... . +.. ..+.+++++||++|.|++++++.|.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 468899999999975321 1 111 13568999999999999999999988763
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.27 E-value=1.9e-12 Score=144.16 Aligned_cols=114 Identities=24% Similarity=0.258 Sum_probs=77.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecc---------------cCceeeeEEEEEEEeC----------------Cee
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTS---------------IAGTTRDKITKTIQIN----------------KFL 273 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~---------------~~gtt~d~~~~~~~~~----------------~~~ 273 (472)
.+|+|+|++|+|||||+|+|++....+.+. ..+.|.......+.+. ++.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 589999999999999999998753322221 2233333222333343 678
Q ss_pred EEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCc
Q psy9409 274 FKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSG 353 (472)
Q Consensus 274 i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~ 353 (472)
+.||||||+.++ ... ...+++.+|++|+|+|++++........+......+.|+++|+||+|+..
T Consensus 100 i~liDTPG~~df-------~~~--------~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 100 INLIDSPGHVDF-------SSE--------VTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEECCCCCCSS-------CHH--------HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred EEEEECcCchhh-------HHH--------HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 999999999988 333 33466889999999999987544322212222235789999999999873
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=3.2e-13 Score=136.88 Aligned_cols=146 Identities=16% Similarity=0.092 Sum_probs=89.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC-----CcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS-----DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEK 298 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~-----~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~ 298 (472)
+.+|+++|.+|+|||||+|+|++. ....+++.||||++..... ++ ..+.++||||+...... .+.+..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~----~~~l~~ 234 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQM----AHFVDA 234 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSG----GGGSCT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHH----HHHHhH
Confidence 468999999999999999999987 5566899999999876543 32 24899999999865110 111111
Q ss_pred HhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCcc------cccccCCCceEEEEe
Q psy9409 299 IGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NINYKNNIANIYLSA 371 (472)
Q Consensus 299 ~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~~~~~~~~i~vSA 371 (472)
..+ .........|.+++++++........... +..+ ..+.|+++|+||+|...... .+.+..+..+.+.++
T Consensus 235 ~~l-~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 235 RDL-KIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp TTH-HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCG
T ss_pred HHH-HHHhcccccCceEEEEcCCceEEECCEEE-EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCc
Confidence 101 11112267899999999853200000000 1111 25679999999999875443 223344445555555
Q ss_pred ccCccHH
Q psy9409 372 SKRIGIN 378 (472)
Q Consensus 372 ~~g~gi~ 378 (472)
.+..++.
T Consensus 313 ~~~~~~~ 319 (369)
T 3ec1_A 313 RYAAEFP 319 (369)
T ss_dssp GGTTTCC
T ss_pred hhhhhcc
Confidence 5544443
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.23 E-value=2.1e-11 Score=133.67 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=76.6
Q ss_pred EEEEEecCCCchhHHHHhhhCCCcce-----------ecc------cCceeeeEEEEEEEeC-------CeeEEEEeCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDVAI-----------VTS------IAGTTRDKITKTIQIN-------KFLFKITDTAG 281 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~~~-----------v~~------~~gtt~d~~~~~~~~~-------~~~i~liDTpG 281 (472)
+|+|+|+..+|||||..+|+...-.+ +.+ ..|.|.......+.|. ++.++|+||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 69999999999999999997432110 111 2234444444455553 57899999999
Q ss_pred CCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcC
Q psy9409 282 IPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGH 354 (472)
Q Consensus 282 ~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~ 354 (472)
+.++ ..+++. .++-+|.+|+|+|+..+- ......+++.+ ..+.|.++|+||+|....
T Consensus 95 HvDF-------~~Ev~~--------aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 95 HVDF-------TIEVER--------SLRVLDGAVVVFCGTSGV-EPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CTTC-------HHHHHH--------HHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred Cccc-------HHHHHH--------HHHHhCeEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 9999 555544 677899999999999873 33333333332 368899999999998654
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.19 E-value=8.4e-13 Score=133.71 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC------cceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHH
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD------VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~------~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e 297 (472)
+.+|+++|.+|+|||||+|+|++.. ...+++.||||++..... +.. .+.++||||+.+.... .+.+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~-~~~liDtPG~~~~~~~----~~~l~ 232 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LDE-ESSLYDTPGIINHHQM----AHYVG 232 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SSS-SCEEEECCCBCCTTSG----GGGSC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ecC-CeEEEeCCCcCcHHHH----HHHhh
Confidence 4689999999999999999999852 445789999999876543 322 3899999999765110 11111
Q ss_pred HHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc
Q psy9409 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 298 ~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~ 355 (472)
...+ .........+.+++++|+......... ..+..+ ..+.|+++|+||+|.....
T Consensus 233 ~~~l-~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 233 KQSL-KLITPTKEIKPMVFQLNEEQTLFFSGL-ARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHH-HHHSCSSCCCCEEEEECTTEEEEETTT-EEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHHH-HHhccccccCceEEEEcCCCEEEEcce-EEEEEecCCCceEEEEecCccccccc
Confidence 1111 122234678999999998432000000 001111 2567999999999987654
No 203
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.19 E-value=1.5e-11 Score=121.92 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=80.6
Q ss_pred EEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC----------CCCCchHHHH
Q psy9409 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR----------YDKHTDFDKK 331 (472)
Q Consensus 262 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s----------~~~~~~~~~~ 331 (472)
.....+.+++..+.+|||+|++.+ ...+..++++++++|+|+|++ +..+...+..
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe~~---------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~ 221 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQRSE---------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA 221 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSHHH---------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred EEEEEEEeeceeeEEEEcCCchhH---------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH
Confidence 455677788999999999998876 334667899999999999776 2222333333
Q ss_pred HHHhC-----CCCCCEEEEEecCCCCcCcc-----------------------cc----------cccCCCceEEEEecc
Q psy9409 332 IIKNF-----PMNIPVIYVWNKIDYSGHQK-----------------------NI----------NYKNNIANIYLSASK 373 (472)
Q Consensus 332 il~~l-----~~~~piivV~NK~Dl~~~~~-----------------------~~----------~~~~~~~~i~vSA~~ 373 (472)
+++.+ ..+.|+++|+||+|+..... .+ ....++.++++||++
T Consensus 222 ~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d 301 (327)
T 3ohm_A 222 LFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 301 (327)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTC
T ss_pred HHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeec
Confidence 33332 15789999999999865320 00 112234578899999
Q ss_pred CccHHHHHHHHHHHhh
Q psy9409 374 RIGINLLRNTLLDLIE 389 (472)
Q Consensus 374 g~gi~~L~~~l~~~~~ 389 (472)
+.||+.+|+.+.+.+.
T Consensus 302 ~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 302 TENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 204
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=125.76 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=56.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCe-----------------eEEEEeCCCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF-----------------LFKITDTAGIP 283 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~-----------------~i~liDTpG~~ 283 (472)
.+.+++|+|+|.||||||||+|+|++... .++++|++|.+.....+.+.+. .+.+|||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 45778999999999999999999999887 5789999999888887776542 49999999998
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
.. ....+.++ .....+++.+|++++|+|+++.
T Consensus 98 ~~-------as~~~glg-~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 98 KG-------AHNGQGLG-NAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ----------------C-CHHHHHHHTSSSEEEEEEC---
T ss_pred cc-------cchhhHHH-HHHHHHHHhcCeEEEEEecCCC
Confidence 76 22222221 1345678899999999999864
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.13 E-value=8.9e-11 Score=116.87 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=56.8
Q ss_pred eEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC----------CCCCch---
Q psy9409 261 DKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR----------YDKHTD--- 327 (472)
Q Consensus 261 d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s----------~~~~~~--- 327 (472)
......+.+++..+.+|||+|++.+ ...+..++++++++|+|+|++ +..+..
T Consensus 150 Gi~~~~~~~~~v~l~iwDtaGQe~~---------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~ 214 (340)
T 4fid_A 150 GIHEYDFVVKDIPFHLIDVGGQRSE---------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI 214 (340)
T ss_dssp SCEEEEEESSSCEEEEEECCSCHHH---------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH
T ss_pred eeEEEEEEeeeeeeccccCCCcccc---------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHH
Confidence 3455667778899999999998876 234567899999999999998 333333
Q ss_pred -HHHHHHHhC-CCCCCEEEEEecCCCCc
Q psy9409 328 -FDKKIIKNF-PMNIPVIYVWNKIDYSG 353 (472)
Q Consensus 328 -~~~~il~~l-~~~~piivV~NK~Dl~~ 353 (472)
++..++..- ..+.|+++|+||+|+..
T Consensus 215 ~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 215 AVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 333333321 15789999999999865
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.13 E-value=2.7e-12 Score=134.38 Aligned_cols=175 Identities=19% Similarity=0.204 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHhh--hCCCEEEEEecCCCchhHHHHhhh------CCCcceecccCc---e--------e-
Q psy9409 200 ELIKIKKKLLKIIQQGKKRALI--RNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAG---T--------T- 259 (472)
Q Consensus 200 ~l~~l~~~l~~~~~~~~~~~~~--~~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~g---t--------t- 259 (472)
..+.+.+++.+++......... .....|+++|++||||||+++.|+ +..+..++..+. . +
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~ 154 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATK 154 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhc
Confidence 3345566666666543211111 234579999999999999999999 777666554221 0 0
Q ss_pred --eeEEEEE---------------EEeCCeeEEEEeCCCCCccccccccchhH-HHHHhHHhhhcccccccEEEEEEeCC
Q psy9409 260 --RDKITKT---------------IQINKFLFKITDTAGIPDINSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDAR 321 (472)
Q Consensus 260 --~d~~~~~---------------~~~~~~~i~liDTpG~~~~~~~~~~~~~~-~e~~~i~~~~~~~~~aD~il~v~D~s 321 (472)
.++.... +.+.++.++||||||.... ... .+. +..... ...+|.+++|+|++
T Consensus 155 ~~i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~-------~~~l~~e--l~~~~~-~i~pd~vllVvDa~ 224 (504)
T 2j37_W 155 ARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQ-------EDSLFEE--MLQVAN-AIQPDNIVYVMDAS 224 (504)
T ss_dssp HTCCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTT-------CHHHHHH--HHHHHH-HHCCSEEEEEEETT
T ss_pred cCceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCccc-------chhHHHH--HHHHHh-hhcCceEEEEEecc
Confidence 1111100 0126789999999998754 222 222 111111 22789999999998
Q ss_pred CCCCchHHHHHHHhCCCCCCE-EEEEecCCCCcCcc---cccccCC------------------CceEEEEeccCcc-HH
Q psy9409 322 YDKHTDFDKKIIKNFPMNIPV-IYVWNKIDYSGHQK---NINYKNN------------------IANIYLSASKRIG-IN 378 (472)
Q Consensus 322 ~~~~~~~~~~il~~l~~~~pi-ivV~NK~Dl~~~~~---~~~~~~~------------------~~~i~vSA~~g~g-i~ 378 (472)
.... .+ ...+.+....|+ .+|+||+|...... .+....+ .|.+++|+.+|.| +.
T Consensus 225 ~g~~--~~-~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~ 301 (504)
T 2j37_W 225 IGQA--CE-AQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIE 301 (504)
T ss_dssp CCTT--HH-HHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTT
T ss_pred cccc--HH-HHHHHHHhhcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHH
Confidence 7532 12 122222222574 89999999875432 1111111 2345679999999 99
Q ss_pred HHHHHHHHH
Q psy9409 379 LLRNTLLDL 387 (472)
Q Consensus 379 ~L~~~l~~~ 387 (472)
+|++.+.+.
T Consensus 302 ~Lie~i~e~ 310 (504)
T 2j37_W 302 GLIDKVNEL 310 (504)
T ss_dssp TTHHHHTTT
T ss_pred HHHHHHHHH
Confidence 999998866
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=1e-10 Score=118.88 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=74.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCC-----------------eeEEEEeCCCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----------------FLFKITDTAGIP 283 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~-----------------~~i~liDTpG~~ 283 (472)
...+.+|+|+|+||||||||+|+|++...+.++++|+||.+.....+.+.+ ..+.+|||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 456889999999999999999999998876789999999998888888876 468999999987
Q ss_pred ccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 284 ~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
...+. .+.+ .......++.+|++++|+|+.+
T Consensus 97 ~~~s~-------~e~L-~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGAST-------GVGL-GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCS-------SSSS-CHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcH-------HHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 64111 1111 1124456678999999999875
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.98 E-value=7.3e-10 Score=113.32 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=74.7
Q ss_pred hhCCCE--EEEEecCCCchhHHHHhhhCCCcc---eecccCceeeeEEEEEEEeCCe--eEEEEeCCCCCccccccc--c
Q psy9409 221 IRNGLN--VVLIGQPNVGKSSLFNSLVGSDVA---IVTSIAGTTRDKITKTIQINKF--LFKITDTAGIPDINSKIK--K 291 (472)
Q Consensus 221 ~~~~~~--V~ivG~~nvGKSSLin~L~~~~~~---~v~~~~gtt~d~~~~~~~~~~~--~i~liDTpG~~~~~~~~~--~ 291 (472)
.+.|.. ++|+|++|+|||||+|.|+|.... .....++.++..+.......+. .+.++|++|+........ .
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhh
Confidence 345555 999999999999999999997532 1122345555443333333332 689999999875310000 0
Q ss_pred c-----hhHHHHH-----hHHhhhcccccc--cE-EEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc
Q psy9409 292 N-----INEVEKI-----GIERTWVELKNS--DI-IIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356 (472)
Q Consensus 292 ~-----~~~~e~~-----~i~~~~~~~~~a--D~-il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~ 356 (472)
+ ...++.. ++.+.......+ |+ ++++.|...+ ......++++.+..+.|+|+|.||+|......
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~-l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS-LKSLDLVTMKKLDSKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHHHHHHHHHTCSCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC-CCHHHHHHHHHHhhCCCEEEEEcchhccchHH
Confidence 0 0011110 011111122233 34 5556665544 44455788888877899999999999886543
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.98 E-value=1.5e-10 Score=114.04 Aligned_cols=131 Identities=16% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEE
Q psy9409 239 SLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQ 318 (472)
Q Consensus 239 SLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~ 318 (472)
+|+++++...+......|... |.....+..++ .+.+||| +..+ . .....+++++|++|+|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~-~~~iwD~--qer~-------~--------~l~~~~~~~ad~vilV~ 92 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG-SGVIENV--LHRK-------N--------LLTKPHVANVDQVILVV 92 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS-SEEEEEE--CCCS-------C--------EETTTTEESCCEEEEEE
T ss_pred cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC-eEEEEEE--cccc-------c--------eeeccccccCCEEEEEE
Confidence 688888877664112233333 44343333333 7999999 4444 1 11335789999999999
Q ss_pred eCCCCC-CchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc-----cccccCC--CceEEEEeccCccHHHHHHHHHHHh
Q psy9409 319 DARYDK-HTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK-----NINYKNN--IANIYLSASKRIGINLLRNTLLDLI 388 (472)
Q Consensus 319 D~s~~~-~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~-----~~~~~~~--~~~i~vSA~~g~gi~~L~~~l~~~~ 388 (472)
|++++. ++.....++..+. .+.|+++|+||+|+.+... .+.+..+ .+++++||++|.|++++++.+...+
T Consensus 93 D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~gei 171 (301)
T 1u0l_A 93 TVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI 171 (301)
T ss_dssp CSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred eCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCe
Confidence 999886 3443333333221 5789999999999976432 2222233 7899999999999999999887543
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.97 E-value=4.9e-10 Score=109.16 Aligned_cols=61 Identities=30% Similarity=0.424 Sum_probs=41.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..+++|+++|.||||||||+|+|.+.....+++.||+|++... +.+ +..+.++||||+...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCC
Confidence 4568999999999999999999999998889999999998743 333 447999999999864
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.94 E-value=4.2e-10 Score=112.99 Aligned_cols=115 Identities=13% Similarity=0.160 Sum_probs=83.2
Q ss_pred eeEEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC----------CchHH
Q psy9409 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK----------HTDFD 329 (472)
Q Consensus 260 ~d~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~----------~~~~~ 329 (472)
.......+.+++..+.+|||+|++.+ ......++++++++|+|+|+++.+ +...+
T Consensus 181 ~Gi~~~~~~~~~~~l~iwDt~GQe~~---------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~ 245 (353)
T 1cip_A 181 TGIVETHFTFKDLHFKMFDVGGQRSE---------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES 245 (353)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGG---------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH
T ss_pred eceEEEEEeeCCeeEEEEeCCCchhh---------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH
Confidence 33445667788999999999999877 234566889999999999999842 23333
Q ss_pred HHHHHhC-----CCCCCEEEEEecCCCCcCc-----------------c-----cccc-----------cCCCceEEEEe
Q psy9409 330 KKIIKNF-----PMNIPVIYVWNKIDYSGHQ-----------------K-----NINY-----------KNNIANIYLSA 371 (472)
Q Consensus 330 ~~il~~l-----~~~~piivV~NK~Dl~~~~-----------------~-----~~~~-----------~~~~~~i~vSA 371 (472)
..+++.+ ..+.|+++|+||+|+.... . .+.. ..++.++++||
T Consensus 246 ~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA 325 (353)
T 1cip_A 246 MKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 325 (353)
T ss_dssp HHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCT
T ss_pred HHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEEC
Confidence 3333332 1578999999999985321 0 1111 23456899999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
++|.||+++|+++.+.+.
T Consensus 326 ~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 999999999999998874
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.89 E-value=1.1e-09 Score=110.31 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=76.5
Q ss_pred EEEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCC----------CCch----
Q psy9409 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYD----------KHTD---- 327 (472)
Q Consensus 262 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~----------~~~~---- 327 (472)
.....+.+++..+.+|||+|++.+ ......++++++++|+|+|+++. .+..
T Consensus 191 i~~~~~~~~~~~l~i~Dt~Gq~~~---------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 191 IHEYDFEIKNVPFKMVDVGGQRSE---------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp EEEEEEEETTEEEEEEEECC----------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred eEEEEeeeCCeEEEEEeccchhhh---------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH
Confidence 344667788999999999999876 23356688999999999999983 2233
Q ss_pred HHHHHHHh-CCCCCCEEEEEecCCCCcCc-----------------c------cc--------cc---cCCCceEEEEec
Q psy9409 328 FDKKIIKN-FPMNIPVIYVWNKIDYSGHQ-----------------K------NI--------NY---KNNIANIYLSAS 372 (472)
Q Consensus 328 ~~~~il~~-l~~~~piivV~NK~Dl~~~~-----------------~------~~--------~~---~~~~~~i~vSA~ 372 (472)
++..+.+. ...+.|+|+|+||+|+.... . .+ .. ..++.++++||+
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~ 335 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAI 335 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTT
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecC
Confidence 33333322 11578999999999986311 1 00 01 224568899999
Q ss_pred cCccHHHHHHHHHHHhh
Q psy9409 373 KRIGINLLRNTLLDLIE 389 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~~ 389 (472)
++.|++++|+.+.+.+.
T Consensus 336 d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 336 NTENIRLVFRDVKDTIL 352 (362)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 99999999999988763
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.89 E-value=2.4e-09 Score=110.00 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhhhhHHhh-hCCCEEEEEecCCCchhHHHHhhh------CCCcceecccCce--------------e
Q psy9409 201 LIKIKKKLLKIIQQGKKRALI-RNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAGT--------------T 259 (472)
Q Consensus 201 l~~l~~~l~~~~~~~~~~~~~-~~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~gt--------------t 259 (472)
+..+.++|..++......... ..+..|+++|++|+||||+++.|. +..+..+...+.. .
T Consensus 76 ~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g 155 (443)
T 3dm5_A 76 IKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH 155 (443)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC
Confidence 344555555555431110001 124578999999999999999987 4444333321110 0
Q ss_pred eeEEEE---------------EEEeCCeeEEEEeCCCCCccccccccchh-HHHHHhHHhhhcccccccEEEEEEeCCCC
Q psy9409 260 RDKITK---------------TIQINKFLFKITDTAGIPDINSKIKKNIN-EVEKIGIERTWVELKNSDIIIYVQDARYD 323 (472)
Q Consensus 260 ~d~~~~---------------~~~~~~~~i~liDTpG~~~~~~~~~~~~~-~~e~~~i~~~~~~~~~aD~il~v~D~s~~ 323 (472)
.+.... ....+++.++|+||||.... .. .... +... .....+|.+++|+|++..
T Consensus 156 vpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~-------d~~lm~e--l~~i-~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 156 IEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE-------DKALIEE--MKQI-SNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC-------CHHHHHH--HHHH-HHHHCCSEEEEEEEGGGG
T ss_pred CcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccc-------hHHHHHH--HHHH-HHhhcCceEEEEEeCCCc
Confidence 001000 00013578999999997654 22 2222 1111 223358999999999864
Q ss_pred CCch-HHHHHHHhCCCCCCEEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHHH
Q psy9409 324 KHTD-FDKKIIKNFPMNIPVIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLLR 381 (472)
Q Consensus 324 ~~~~-~~~~il~~l~~~~piivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L~ 381 (472)
.... ....+.+ .-.+..+|+||+|...... .+....+.|+.+++. |+++++|.
T Consensus 226 q~a~~~a~~f~~---~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 226 QQAYNQALAFKE---ATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp GGHHHHHHHHHH---SCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTCEE
T ss_pred hhHHHHHHHHHh---hCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHHhh
Confidence 2211 2222221 2245679999999876543 233456788888885 77777654
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.82 E-value=2.8e-09 Score=108.39 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=80.1
Q ss_pred EEEEEEeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC----------CCCchHHHHH
Q psy9409 263 ITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY----------DKHTDFDKKI 332 (472)
Q Consensus 263 ~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~----------~~~~~~~~~i 332 (472)
....+.+++..+.+|||+|++.+ ...+..++++++++|+|+|+++ ..++..+..+
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe~~---------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~ 272 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQRDE---------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSGGG---------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHH
T ss_pred EEEEeecCCccceecccchhhhh---------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHH
Confidence 34567778999999999999887 3345678899999999999998 4444433333
Q ss_pred HHhC-----CCCCCEEEEEecCCCCcCcc-------------------------------------cc-----ccc----
Q psy9409 333 IKNF-----PMNIPVIYVWNKIDYSGHQK-------------------------------------NI-----NYK---- 361 (472)
Q Consensus 333 l~~l-----~~~~piivV~NK~Dl~~~~~-------------------------------------~~-----~~~---- 361 (472)
++.+ ..+.|+++|+||+|+..... .+ .+.
T Consensus 273 ~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~ 352 (402)
T 1azs_C 273 FKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTAS 352 (402)
T ss_dssp HHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccc
Confidence 3322 25789999999999843210 00 000
Q ss_pred ----CCCceEEEEeccCccHHHHHHHHHHHhh
Q psy9409 362 ----NNIANIYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 362 ----~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..+.++++||+++.||+++|+.+.+.+.
T Consensus 353 ~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 353 GDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp CTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 1334678999999999999999888763
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=5e-09 Score=101.39 Aligned_cols=130 Identities=22% Similarity=0.291 Sum_probs=72.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceec-------ccCceee-eEEEEEEEeCC--eeEEEEeCCCCCccccccccchh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVT-------SIAGTTR-DKITKTIQINK--FLFKITDTAGIPDINSKIKKNIN 294 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~-------~~~gtt~-d~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~ 294 (472)
++++++|++|+|||||+|.|++......+ +.+.++. ..+.......+ ..+.++|++|+...... .....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~~~ 81 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENCWE 81 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTCSH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHHHH
Confidence 68999999999999999999985432211 1122211 11111111111 26799999998753110 11111
Q ss_pred HHHHHhHHhh--------------hcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCc
Q psy9409 295 EVEKIGIERT--------------WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQ 355 (472)
Q Consensus 295 ~~e~~~i~~~--------------~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~ 355 (472)
.+........ .-.+..+++.++++|............+++.+....++++|+||+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHH
Confidence 2222111111 113455799999999764334444566666665458999999999988654
No 216
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.77 E-value=3.8e-09 Score=106.05 Aligned_cols=104 Identities=9% Similarity=0.043 Sum_probs=72.2
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCC----------CCCCchHHHHHHHhC----
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR----------YDKHTDFDKKIIKNF---- 336 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s----------~~~~~~~~~~il~~l---- 336 (472)
...+.+|||+|++.+ ......++++++++|+|+|++ +..++..+..+++.+
T Consensus 182 ~v~l~iwDtaGQe~~---------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~ 246 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE---------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246 (354)
T ss_dssp --EEEEEEECCSTTG---------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG
T ss_pred ceeeEEEECCCchhh---------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc
Confidence 468999999999887 334567889999999999998 333444333333332
Q ss_pred -CCCCCEEEEEecCCCCcCcc----------------------------cc-ccc---------------CCCceEEEEe
Q psy9409 337 -PMNIPVIYVWNKIDYSGHQK----------------------------NI-NYK---------------NNIANIYLSA 371 (472)
Q Consensus 337 -~~~~piivV~NK~Dl~~~~~----------------------------~~-~~~---------------~~~~~i~vSA 371 (472)
..+.|+++|+||+|+..... .+ .+. ....++++||
T Consensus 247 ~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA 326 (354)
T 2xtz_A 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTA 326 (354)
T ss_dssp GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCT
T ss_pred ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEe
Confidence 15789999999999853210 01 110 1223689999
Q ss_pred ccCccHHHHHHHHHHHhh
Q psy9409 372 SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 372 ~~g~gi~~L~~~l~~~~~ 389 (472)
+++.||+++|+.+.+.+.
T Consensus 327 ~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 327 LDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHH
Confidence 999999999999988763
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.71 E-value=6.9e-08 Score=98.64 Aligned_cols=153 Identities=21% Similarity=0.191 Sum_probs=87.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC----cceecccCceeeeEEEEEEEeCCe-eEEEEeCCCCCccccccccchhHH
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD----VAIVTSIAGTTRDKITKTIQINKF-LFKITDTAGIPDINSKIKKNINEV 296 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~----~~~v~~~~gtt~d~~~~~~~~~~~-~i~liDTpG~~~~~~~~~~~~~~~ 296 (472)
..+..++|+|++|||||||+|.|+|.. ..+......+|+... ....... .+.++|+||+... ....
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~-------~~~~ 137 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGST-------NFPP 137 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGS-------SCCH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccch-------HHHH
Confidence 345689999999999999999999942 222112122232211 1111222 5899999998643 1122
Q ss_pred HHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhC-CCCCCEEEEEecCCCCcCc---------c---------c
Q psy9409 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKIDYSGHQ---------K---------N 357 (472)
Q Consensus 297 e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l-~~~~piivV~NK~Dl~~~~---------~---------~ 357 (472)
+.. +... .+...+..++ ++...+ ......+...+ ..+.|+++|.||.|+.--+ . .
T Consensus 138 ~~~-L~~~--~L~~~~~~~~-lS~G~~--~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 138 DTY-LEKM--KFYEYDFFII-ISATRF--KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp HHH-HHHT--TGGGCSEEEE-EESSCC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHH-HHHc--CCCccCCeEE-eCCCCc--cHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 221 1111 1334455555 776532 22222233222 2468999999999975111 0 1
Q ss_pred cc-----cc--CCCceEEEEe--ccCccHHHHHHHHHHHhh
Q psy9409 358 IN-----YK--NNIANIYLSA--SKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 358 ~~-----~~--~~~~~i~vSA--~~g~gi~~L~~~l~~~~~ 389 (472)
+. +. ....++.+|+ .++.|+++|.+.+.+.++
T Consensus 212 l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 212 NCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 11 11 1235789999 777789999999999884
No 218
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.68 E-value=3.8e-09 Score=108.83 Aligned_cols=119 Identities=21% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC------CcceecccC------------------------ceeeeEEE----EEEEe
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIA------------------------GTTRDKIT----KTIQI 269 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~------------------------gtt~d~~~----~~~~~ 269 (472)
+..|+++|++|+||||+++.|... .+..++..+ ++++|... ..-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998862 232222111 13333110 00012
Q ss_pred CCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCC-C-EEEEEe
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI-P-VIYVWN 347 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~-p-iivV~N 347 (472)
.++.++|+||||.... ....-.. +. ....+..+|.+++|+|+.... +.+. ..+.+.... | ..+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~-------~~~l~~~-l~-~i~~~~~~d~vllVvda~~g~--~~~~-~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-------EKGLLEE-MK-QIKEITNPDEIILVIDGTIGQ--QAGI-QAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS-------HHHHHHH-HH-HTTSSSCCSEEEEEEEGGGGG--GHHH-HHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc-------cHHHHHH-HH-HHHHHhcCcceeEEeeccccH--HHHH-HHHHHhhcccCCeEEEEe
Confidence 5678999999997754 2222111 11 223445799999999987642 2222 223333345 6 889999
Q ss_pred cCCCCcC
Q psy9409 348 KIDYSGH 354 (472)
Q Consensus 348 K~Dl~~~ 354 (472)
|+|....
T Consensus 247 K~D~~~~ 253 (432)
T 2v3c_C 247 KLDGSAK 253 (432)
T ss_dssp CSSSCST
T ss_pred CCCCccc
Confidence 9998643
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=1.3e-08 Score=97.96 Aligned_cols=58 Identities=33% Similarity=0.439 Sum_probs=40.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
++++++|.||+|||||+|+|.+.....+++.||+|+.... +.. +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 7999999999999999999999988778899999987632 222 347899999999875
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=3.1e-08 Score=101.66 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhhHH--hhhCCCEEEEEecCCCchhHHHHhhh------CCCcceecccC----------------c
Q psy9409 202 IKIKKKLLKIIQQGKKRA--LIRNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIA----------------G 257 (472)
Q Consensus 202 ~~l~~~l~~~~~~~~~~~--~~~~~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~----------------g 257 (472)
+.+.+++..++....... ....+..|+++|++|+||||++..|. +..+..++..+ +
T Consensus 73 ~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g 152 (433)
T 3kl4_A 73 SIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG 152 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC
Confidence 445555555554321111 11134568899999999999999987 44433322110 1
Q ss_pred eeeeEE---E----------EEEEeCCeeEEEEeCCCCCc--cccccccchhHHHHHhHHhhhcccccccEEEEEEeCCC
Q psy9409 258 TTRDKI---T----------KTIQINKFLFKITDTAGIPD--INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322 (472)
Q Consensus 258 tt~d~~---~----------~~~~~~~~~i~liDTpG~~~--~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~ 322 (472)
...... . ......++.+.++||||... .. ...... +....... .+|.+++|+|+..
T Consensus 153 v~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d------~~lm~e--l~~i~~~~-~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 153 VQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEE------TKLLEE--MKEMYDVL-KPDDVILVIDASI 223 (433)
T ss_dssp CCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCT------THHHHH--HHHHHHHH-CCSEEEEEEEGGG
T ss_pred CceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCC------HHHHHH--HHHHHHhh-CCcceEEEEeCcc
Confidence 100000 0 00011367899999999654 20 122222 11122222 4699999999986
Q ss_pred CCCc-hHHHHHHHhCCCCCCEEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 323 DKHT-DFDKKIIKNFPMNIPVIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 323 ~~~~-~~~~~il~~l~~~~piivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
.... .....+.+.+ .+..+|+||+|...... .+....+.|+.+++. |+++++
T Consensus 224 gq~a~~~a~~f~~~~---~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 224 GQKAYDLASRFHQAS---PIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKIDE 279 (433)
T ss_dssp GGGGHHHHHHHHHHC---SSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred chHHHHHHHHHhccc---CCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChHh
Confidence 4221 1222332222 46789999999865432 223345788888885 666643
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.49 E-value=6.4e-08 Score=102.96 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=46.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecccCceeeeEEEEEEEe-------CCeeEEEEeCCCCCcc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI-------NKFLFKITDTAGIPDI 285 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~gtt~d~~~~~~~~-------~~~~i~liDTpG~~~~ 285 (472)
...+|+|+|.||||||||+|+|++..... +.+++|++.....+.| .+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 34689999999999999999999987542 5555555544433332 4678999999999865
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.42 E-value=1.4e-07 Score=93.61 Aligned_cols=226 Identities=17% Similarity=0.209 Sum_probs=105.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhcC--hhhHHHHHHHHHHHHH-HHHhhHhcCCCCCccccccChHHHHHHH---------
Q psy9409 134 EAIIDLINASTESAAKSAMISLSG--KFSKLINILLDKLINL-RTLIEFSFDFPEENQELILNKNDFFNEL--------- 201 (472)
Q Consensus 134 e~~~~li~a~~~~~~~~a~~~l~g--~l~~~~~~~~~~l~~~-~a~~e~~id~~ee~~~~~~~~~~l~~~l--------- 201 (472)
+.+.+.|+|+|+.+.+.++.+..+ .+++. .|.+-+.++ .+++++ |+..+-.. ...+.+++++
T Consensus 20 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ll~a--dv~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (328)
T 3e70_C 20 KRVEEEVEKEEEEVEKKGLLDRILTVEIKEK--DVDKALDELEIDLLEA--DVALEVVD--ALREKIKQKLVGKKVRIGT 93 (328)
T ss_dssp HHHHHHHHHHHHTC--------CCEEECCHH--HHHHHHHHHHHHHHHT--TCCHHHHH--HHHHHHHHHHTTCEEECC-
T ss_pred HHhhhhccccccccccccHHHHHhhccCCHH--HHHHHHHHHHHHHHHc--CCCHHHHH--HHHHHHHHHHhhcccCCcc
Confidence 567889999999888888877654 33322 233222222 134454 33221110 0111222211
Q ss_pred -------HHHHHHHHHHHHhhhhHH------hhhCCCEEEEEecCCCchhHHHHhhhCC------CcceecccCce----
Q psy9409 202 -------IKIKKKLLKIIQQGKKRA------LIRNGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGT---- 258 (472)
Q Consensus 202 -------~~l~~~l~~~~~~~~~~~------~~~~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gt---- 258 (472)
+.+.+++.+++.....-. ....+-.++++|++|+||||+++.|.+. +....+.....
T Consensus 94 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~ 173 (328)
T 3e70_C 94 DKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAI 173 (328)
T ss_dssp --CHHHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHH
T ss_pred CHHHHHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchH
Confidence 123334444433221000 1134567999999999999999998863 11111100000
Q ss_pred ----------eeeEEEEEE---------------EeCCeeEEEEeCCCCCccccccccchhHHHHHh-HHhhhccccccc
Q psy9409 259 ----------TRDKITKTI---------------QINKFLFKITDTAGIPDINSKIKKNINEVEKIG-IERTWVELKNSD 312 (472)
Q Consensus 259 ----------t~d~~~~~~---------------~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~-i~~~~~~~~~aD 312 (472)
...+..... ...++.+.++||+|..... ....+.+. +.+. -.+|
T Consensus 174 eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~------~~l~~eL~~i~ra----l~~d 243 (328)
T 3e70_C 174 EQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETN------RNLMDEMKKIARV----TKPN 243 (328)
T ss_dssp HHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTT------TCHHHHHHHHHHH----HCCS
T ss_pred HHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHH------HHHHHHHHHHHHH----hcCC
Confidence 000000000 0023567899999986530 22222211 2222 2378
Q ss_pred EEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHH
Q psy9409 313 IIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 313 ~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L 380 (472)
-.++++|+.... + ....++.+. ......+++||.|...... .+....+.|+.+++ +|++++++
T Consensus 244 e~llvLDa~t~~--~-~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 244 LVIFVGDALAGN--A-IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp EEEEEEEGGGTT--H-HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred CCEEEEecHHHH--H-HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 899999987642 2 222222222 1123478999999744322 23334577888888 67666543
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.38 E-value=1.7e-07 Score=92.03 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=61.9
Q ss_pred cccccccEEEEEEeCCCCC-CchHHHHHHHhCC-CCCCEEEEEecCCCCcCc-----c---cccccCCCceEEEEeccCc
Q psy9409 306 VELKNSDIIIYVQDARYDK-HTDFDKKIIKNFP-MNIPVIYVWNKIDYSGHQ-----K---NINYKNNIANIYLSASKRI 375 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~-~~~~~~~il~~l~-~~~piivV~NK~Dl~~~~-----~---~~~~~~~~~~i~vSA~~g~ 375 (472)
.+++++|++++|+|++++. ++.....++..+. .++|+++|+||+|+.+.. . ...+..+.+++++||++|.
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4789999999999999875 4443344443322 578999999999997643 1 1222357789999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|+++|++.+...+
T Consensus 155 gi~~L~~~l~G~i 167 (302)
T 2yv5_A 155 GIDELVDYLEGFI 167 (302)
T ss_dssp THHHHHHHTTTCE
T ss_pred CHHHHHhhccCcE
Confidence 9999998876543
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.37 E-value=1.4e-06 Score=85.23 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=81.3
Q ss_pred CCEEEEEecCCCchhHHHHhhh------CCCcceecccCc---e-----------eeeEEEE---------------EEE
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIAG---T-----------TRDKITK---------------TIQ 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~------~~~~~~v~~~~g---t-----------t~d~~~~---------------~~~ 268 (472)
+-.++++|++|+||||+++.|. +.....++..+. . ..+.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4468899999999999999987 333332222110 0 0011100 001
Q ss_pred eCCeeEEEEeCCCCCc--cccccccchhH-HHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCC-EEE
Q psy9409 269 INKFLFKITDTAGIPD--INSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP-VIY 344 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~--~~~~~~~~~~~-~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~p-iiv 344 (472)
.+++.++++||||... . .+. .+. +.. ......+|.+++|+|+... .+.+. ..+.+....| ..+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~-------~~~l~~e--l~~-i~~~~~~d~vllVvda~~g--~~~~~-~~~~~~~~~~i~gv 244 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGE-------EAALLEE--MKN-IYEAIKPDEVTLVIDASIG--QKAYD-LASKFNQASKIGTI 244 (297)
T ss_dssp HTTCSEEEEECCCSCCTTC-------HHHHHHH--HHH-HHHHHCCSEEEEEEEGGGG--GGHHH-HHHHHHHTCTTEEE
T ss_pred hCCCCEEEEeCCCCccccc-------HHHHHHH--HHH-HHHHhcCCEEEEEeeCCch--HHHHH-HHHHHHhhCCCCEE
Confidence 1567899999999776 3 222 211 111 1123368999999998753 22222 2222222355 778
Q ss_pred EEecCCCCcCcc---cccccCCCceEEEEeccCccHHHH
Q psy9409 345 VWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 345 V~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L 380 (472)
|+||+|...... .+....+.|+.+++ +|++++++
T Consensus 245 Vlnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 245 IITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp EEECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred EEeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 999999764332 23445677887776 57776554
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.09 E-value=2.5e-06 Score=82.84 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=63.5
Q ss_pred HHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc--ccc---ccCCCceEEEEeccCc
Q psy9409 301 IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NIN---YKNNIANIYLSASKRI 375 (472)
Q Consensus 301 i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~~---~~~~~~~i~vSA~~g~ 375 (472)
.+.....+..+|++++|+|+.++.+... ..+-+.+ .++|.++|+||+|+.+... .+. +..+.+++++||++|.
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCT
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcc
Confidence 3446678899999999999999854431 1222333 6899999999999987432 121 2346789999999999
Q ss_pred cHHHHHHHHHHHh
Q psy9409 376 GINLLRNTLLDLI 388 (472)
Q Consensus 376 gi~~L~~~l~~~~ 388 (472)
|+++|++.+.+.+
T Consensus 92 gi~~L~~~i~~~l 104 (282)
T 1puj_A 92 GLNQIVPASKEIL 104 (282)
T ss_dssp TGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999998877664
No 226
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.03 E-value=2e-05 Score=80.98 Aligned_cols=134 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred CEEEEEecCCCchhHHHHhhh-------CCCcceecccCcee--------------eeEEEE---------------EEE
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLV-------GSDVAIVTSIAGTT--------------RDKITK---------------TIQ 268 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~-------~~~~~~v~~~~gtt--------------~d~~~~---------------~~~ 268 (472)
..|+++|++|+||||+...|. +..+..++-.+..+ .+.... ...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~ 180 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999987 55554433222110 011110 001
Q ss_pred eCCeeEEEEeCCCCCccccccccchhH-HHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCC-EEEEE
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP-VIYVW 346 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~-~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~p-iivV~ 346 (472)
..++.++|+||||.... .+. ... +. ....+..+|.+++|+|+.... +.+. ..+.+....+ .-+|+
T Consensus 181 ~~~~D~VIIDTpG~l~~-------~~~l~~~--L~-~~~~~~~p~~vllVvda~~g~--~~~~-~~~~f~~~l~i~gvVl 247 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHV-------DEAMMDE--IK-QVHASINPVETLFVVDAMTGQ--DAAN-TAKAFNEALPLTGVVL 247 (433)
T ss_dssp HTTCSEEEEECCCCCTT-------CHHHHHH--HH-HHHHHSCCSEEEEEEETTBCT--THHH-HHHHHHHHSCCCCEEE
T ss_pred hCCCCEEEEECCCcccc-------cHHHHHH--HH-HHHHhhcCcceeEEeecchhH--HHHH-HHHHHhccCCCeEEEE
Confidence 14678999999997654 222 222 11 112344689999999998642 2222 1222222234 34799
Q ss_pred ecCCCCcCcc---cccccCCCceEEEEe
Q psy9409 347 NKIDYSGHQK---NINYKNNIANIYLSA 371 (472)
Q Consensus 347 NK~Dl~~~~~---~~~~~~~~~~i~vSA 371 (472)
||+|...... .+....+.|+.++..
T Consensus 248 nK~D~~~~~g~~l~i~~~~~~Pi~~iG~ 275 (433)
T 2xxa_A 248 TKVDGDARGGAALSIRHITGKPIKFLGV 275 (433)
T ss_dssp ECTTSSSCCTHHHHHHHHHCCCEEEEEC
T ss_pred ecCCCCccHHHHHHHHHHHCCCeEEEec
Confidence 9999864332 123334556555543
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.98 E-value=2.6e-05 Score=83.74 Aligned_cols=81 Identities=14% Similarity=0.033 Sum_probs=41.4
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhccccc-ccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEEEEEecCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKN-SDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYVWNKID 350 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~-aD~il~v~D~s~~~~~~~~~~il~~l~-~~~piivV~NK~D 350 (472)
.+.++|.||+....+. ....+.... -......++.+ ..+++++++.+..........+.+.+. .+.+.|+|+||.|
T Consensus 148 ~LlLlDePGi~~~~t~-~LD~~~~~~-i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVG-NQPADIGYK-IKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------C-CSSCSHHHH-HHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred ceeEeeCCCccccccC-CCCHHHHHH-HHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 5899999997753111 011111111 11222333443 356666666543322334455555553 5679999999999
Q ss_pred CCcCc
Q psy9409 351 YSGHQ 355 (472)
Q Consensus 351 l~~~~ 355 (472)
+....
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 98654
No 228
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.93 E-value=1.7e-05 Score=72.83 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=59.6
Q ss_pred hcccccccEEEEEEeCCCCCCchHHHHH---HHhCC-----CCCCEEEEEecC-CCCcCcc--c------cccc-CCCce
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTDFDKKI---IKNFP-----MNIPVIYVWNKI-DYSGHQK--N------INYK-NNIAN 366 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~~~~~i---l~~l~-----~~~piivV~NK~-Dl~~~~~--~------~~~~-~~~~~ 366 (472)
..|+.++|++|||+|+++....+.-.++ .+.+. .+.|++|+.||. |+...-. . +... ..+.+
T Consensus 120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~I 199 (227)
T 3l82_B 120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLV 199 (227)
T ss_dssp HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEE
T ss_pred HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEE
Confidence 4678999999999999987544322222 22221 467999999995 6754432 1 1111 23458
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..|||++|+|+.+-++||.+.+.
T Consensus 200 q~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 200 QDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEeECCCCcCHHHHHHHHHHHHH
Confidence 89999999999999999988764
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.91 E-value=4.6e-06 Score=84.12 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=57.8
Q ss_pred cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cc----cccCCC---ceEEEEec
Q psy9409 306 VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NI----NYKNNI---ANIYLSAS 372 (472)
Q Consensus 306 ~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~----~~~~~~---~~i~vSA~ 372 (472)
...+.+|++++|+|++++. ..+...+.+.+ .++|+++|+||+|+.+... .+ .+..+. +++.+||+
T Consensus 65 ~i~~~~~~il~VvD~~d~~-~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~ 142 (368)
T 3h2y_A 65 GIGKSDALVVKIVDIFDFN-GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAA 142 (368)
T ss_dssp HHHHSCCEEEEEEETTSHH-HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTT
T ss_pred HHhccCcEEEEEEECCCCc-ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCC
Confidence 3456788999999999752 12222233333 4789999999999976542 11 223344 68999999
Q ss_pred cCccHHHHHHHHHHHh
Q psy9409 373 KRIGINLLRNTLLDLI 388 (472)
Q Consensus 373 ~g~gi~~L~~~l~~~~ 388 (472)
+|.|+++|++.|.+..
T Consensus 143 ~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 143 KGQGIAELADAIEYYR 158 (368)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHhhhhhhc
Confidence 9999999999998754
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.89 E-value=8.3e-06 Score=82.24 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred ccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCCcCcc------cc----cccCCC---ceEEEEecc
Q psy9409 307 ELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK------NI----NYKNNI---ANIYLSASK 373 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~~~~~------~~----~~~~~~---~~i~vSA~~ 373 (472)
....++++++|+|++++. ..+...+.+.+ .++|+++|+||+|+.+... .+ .+..+. +++.+||++
T Consensus 68 ~~~~~~lil~VvD~~d~~-~s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~ 145 (369)
T 3ec1_A 68 IGESKALVVNIVDIFDFN-GSFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAK 145 (369)
T ss_dssp HHHHCCEEEEEEETTCSG-GGCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTT
T ss_pred hhccCcEEEEEEECCCCC-CchhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCC
Confidence 346789999999999874 23333333334 4789999999999986531 11 223344 689999999
Q ss_pred CccHHHHHHHHHHHh
Q psy9409 374 RIGINLLRNTLLDLI 388 (472)
Q Consensus 374 g~gi~~L~~~l~~~~ 388 (472)
|.|+++|++.+.+..
T Consensus 146 g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 146 GIGMAKVMEAINRYR 160 (369)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998765
No 231
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.82 E-value=2.8e-05 Score=76.22 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=75.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccC---c-----------eeeeEEEEE------------E---
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIA---G-----------TTRDKITKT------------I--- 267 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~---g-----------tt~d~~~~~------------~--- 267 (472)
.+-.|+++|++|||||||++.|.+. .....+... + .....+... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3557999999999999999998742 111111000 0 000000000 0
Q ss_pred EeCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCc-hHHHHHHHhCCCCCCEEEEE
Q psy9409 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHT-DFDKKIIKNFPMNIPVIYVW 346 (472)
Q Consensus 268 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~-~~~~~il~~l~~~~piivV~ 346 (472)
...+..+.++||+|...... .. ...........+......++.+++++|+...... .....+.+.. ...++++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~--~~-~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~---~~t~iiv 254 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKH--NL-MEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV---GLTGVIV 254 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCH--HH-HHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH---CCSEEEE
T ss_pred HhCCCCEEEecCCCCCCchH--HH-HHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHc---CCcEEEE
Confidence 01234678999999764300 00 1122221111222345568888999998764211 1222222211 2357899
Q ss_pred ecCCCCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 347 NKIDYSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 347 NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
||.|...... .+....+.|+.+++ +|+++++
T Consensus 255 Th~d~~a~gg~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 255 TKLDGTAKGGVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp ECTTSSCCCTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred ECCcccccccHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 9998653322 23334566777766 4444443
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.76 E-value=1.1e-05 Score=83.16 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=40.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC---------------CcceecccCceeeeEEEEEEEeC-----------CeeEEEEeC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS---------------DVAIVTSIAGTTRDKITKTIQIN-----------KFLFKITDT 279 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~---------------~~~~v~~~~gtt~d~~~~~~~~~-----------~~~i~liDT 279 (472)
-|+|+|++++|||||+|.|++. .....+.. ++|+....+.+.+. ...+.++||
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 5889999999999999999864 22222222 24444444444442 256999999
Q ss_pred CCCCcc
Q psy9409 280 AGIPDI 285 (472)
Q Consensus 280 pG~~~~ 285 (472)
||+.+.
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998765
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.72 E-value=5.7e-05 Score=73.69 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=71.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC-------CCcceecccCc--ee------------eeEEEEE---------EEeCCe
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG-------SDVAIVTSIAG--TT------------RDKITKT---------IQINKF 272 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~-------~~~~~v~~~~g--tt------------~d~~~~~---------~~~~~~ 272 (472)
.+-.|+++|++|+||||++..|.+ ..+..+...+. .. .+..... -...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 455799999999999999998863 12222211110 00 0000000 012456
Q ss_pred eEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCCEEEEEecCCCC
Q psy9409 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYS 352 (472)
Q Consensus 273 ~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~piivV~NK~Dl~ 352 (472)
.+.|+||||.... ....+.. +..... ....|.+++|+|++.. ......+.+.+..-...-+|+||.|..
T Consensus 184 dlvIiDT~G~~~~------~~~~~~e--l~~~l~-~~~~~~~~lVl~at~~--~~~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFK------DPQYIDE--LKETIP-FESSIQSFLVLSATAK--YEDMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTT------SHHHHHH--HHHHSC-CCTTEEEEEEEETTBC--HHHHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CEEEEeCCCCChh------hHHHHHH--HHHHHh-hcCCCeEEEEEECCCC--HHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 8999999997654 0122222 111111 1236778999988753 233444444433112245677999976
Q ss_pred cCcc---cccccCCCceEEEE
Q psy9409 353 GHQK---NINYKNNIANIYLS 370 (472)
Q Consensus 353 ~~~~---~~~~~~~~~~i~vS 370 (472)
.... .+....+.|+..++
T Consensus 253 ~~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 253 TSLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp SCCHHHHHHHHTCSCCCSEEC
T ss_pred cchhHHHHHHHHHCcCEEEEE
Confidence 4432 22334456655544
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.65 E-value=1e-05 Score=77.58 Aligned_cols=79 Identities=18% Similarity=0.081 Sum_probs=58.6
Q ss_pred HhhhcccccccEEEEEEeCCCCCCch--HHHHHHHhCCCCCCEEEEEecCCCCcCcc--cc---cccCCCceEEEEeccC
Q psy9409 302 ERTWVELKNSDIIIYVQDARYDKHTD--FDKKIIKNFPMNIPVIYVWNKIDYSGHQK--NI---NYKNNIANIYLSASKR 374 (472)
Q Consensus 302 ~~~~~~~~~aD~il~v~D~s~~~~~~--~~~~il~~l~~~~piivV~NK~Dl~~~~~--~~---~~~~~~~~i~vSA~~g 374 (472)
+.....+.++|++++|+|+.++.+.. ... + + ++|.++|+||+|+.+... .+ .+..+.++ .+||++|
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l---l--~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F---S--RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C---T--TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h---c--CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 34556788999999999999874432 111 2 2 789999999999987532 11 12346778 9999999
Q ss_pred ccHHHHHHHHHHH
Q psy9409 375 IGINLLRNTLLDL 387 (472)
Q Consensus 375 ~gi~~L~~~l~~~ 387 (472)
.|+++|++.+.+.
T Consensus 86 ~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 86 PRKVLLKKLSFDR 98 (262)
T ss_dssp CHHHHHHHHCCCT
T ss_pred cCHHHHHHHHHHh
Confidence 9999999887664
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.60 E-value=0.0004 Score=68.43 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCeeEEEEeCCCCCccccccccchh-HHHHHh-HHhhh--cccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCC-EEE
Q psy9409 270 NKFLFKITDTAGIPDINSKIKKNIN-EVEKIG-IERTW--VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP-VIY 344 (472)
Q Consensus 270 ~~~~i~liDTpG~~~~~~~~~~~~~-~~e~~~-i~~~~--~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~p-iiv 344 (472)
.++.++|+||||.... .+ .++.+. +.... ..-..+|.+++|+|+... .+...... .+....+ .=+
T Consensus 190 ~~yD~VIIDTpg~l~~-------~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~-~~~~~~~i~Gv 259 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQN-------KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAE-EFSKVADVSGI 259 (320)
T ss_dssp TTCSEEEEECCCCGGG-------HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHH-HHTTTSCCCEE
T ss_pred cCCCEEEEcCCCcccc-------cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHH-HHhhcCCCcEE
Confidence 3578999999997654 22 222210 11111 112348999999998853 33333332 2222233 347
Q ss_pred EEecCCCCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 345 VWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 345 V~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
|+||.|...... .+....+.|+.+++ +|+++++
T Consensus 260 Vltk~d~~~~~g~~~~~~~~~~~Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 260 ILTKMDSTSKGGIGLAIKELLNIPIKMIG--VGEKVDD 295 (320)
T ss_dssp EEECGGGCSCTTHHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred EEeCCCCCCchhHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 899999654322 22334567776665 4444443
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.57 E-value=0.00017 Score=74.77 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=75.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccCcee--------------eeEEEEEE---------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGTT--------------RDKITKTI--------------- 267 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gtt--------------~d~~~~~~--------------- 267 (472)
.+-.++|+|++|+|||||++.|.+. .+.......... ..++....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 4557899999999999999998752 222111100000 00000000
Q ss_pred EeCCeeEEEEeCCCCCccccccccchhHHHHHh-HHhhhc-c-cccccEEEEEEeCCCCCC-chHHHHHHHhCCCCCCEE
Q psy9409 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIG-IERTWV-E-LKNSDIIIYVQDARYDKH-TDFDKKIIKNFPMNIPVI 343 (472)
Q Consensus 268 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~-i~~~~~-~-~~~aD~il~v~D~s~~~~-~~~~~~il~~l~~~~pii 343 (472)
...++.+.|+||+|..... .+....+. +.+... . ....+-+++|+|++.... ......+.+.+ + ...
T Consensus 372 ~~~~~DvVLIDTaGrl~~~------~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~--~-itg 442 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNK------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--G-LTG 442 (503)
T ss_dssp HHTTCSEEEECCCCSCCCH------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHT--C-CSE
T ss_pred HhcCCCEEEEeCCCccchh------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhc--C-CCE
Confidence 0134679999999976430 12222110 111111 1 123678899999876411 11223332222 2 235
Q ss_pred EEEecCCCCcCcc---cccccCCCceEEEEeccCccHHHH
Q psy9409 344 YVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 344 vV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L 380 (472)
+|+||.|-..... .+....+.|+.++. +|.++++|
T Consensus 443 vIlTKLD~takgG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 443 ITLTKLDGTAKGGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp EEEECGGGCSCCTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred EEEEcCCCcccccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 7999999643322 23334567777654 56666553
No 237
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.55 E-value=0.00011 Score=70.82 Aligned_cols=85 Identities=14% Similarity=-0.012 Sum_probs=59.8
Q ss_pred hcccccccEEEEEEeCCCCCCch---HHH---HHHHh--CCCCCCEEEEEec-CCCCcCcc--c------cccc-CCCce
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD---FDK---KIIKN--FPMNIPVIYVWNK-IDYSGHQK--N------INYK-NNIAN 366 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~---~~~---~il~~--l~~~~piivV~NK-~Dl~~~~~--~------~~~~-~~~~~ 366 (472)
..++.++|++|||+|+++.+..+ ... .+++. .-.+.|++|..|| .|+...-. . +... ..+.+
T Consensus 205 r~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~I 284 (312)
T 3l2o_B 205 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLV 284 (312)
T ss_dssp HHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEE
T ss_pred HHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEE
Confidence 35788999999999999875433 222 22221 1157899999997 58865432 1 1111 23458
Q ss_pred EEEEeccCccHHHHHHHHHHHhh
Q psy9409 367 IYLSASKRIGINLLRNTLLDLIE 389 (472)
Q Consensus 367 i~vSA~~g~gi~~L~~~l~~~~~ 389 (472)
..|||.+|+|+.+-+++|.+.+.
T Consensus 285 q~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 285 QDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp EEEETTTCTTHHHHHHHHHHHSC
T ss_pred EecccCCCcCHHHHHHHHHHHHH
Confidence 89999999999999999999874
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.54 E-value=2.6e-05 Score=76.42 Aligned_cols=60 Identities=30% Similarity=0.300 Sum_probs=35.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCcceecccC-------ceeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-------GTTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~-------gtt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
..+-.++++|++|||||||+|.|.+.....++... ++|+... .+... ...++||||+..+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCcccc
Confidence 34668999999999999999999987654444433 3444321 22222 2468999998874
No 239
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.40 E-value=7.5e-05 Score=73.20 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=73.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC------CcceecccCce--------------eeeEEEE------------EE---E
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGT--------------TRDKITK------------TI---Q 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gt--------------t~d~~~~------------~~---~ 268 (472)
+-.|+++|++|+||||++..|.+. ....++..... ..+.... .+ .
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 446899999999999999988742 22211110000 0001000 00 1
Q ss_pred eCCeeEEEEeCCCCCccccccccchhH-HHHH-hHHhhhc--ccccccEEEEEEeCCCCCCchHH---HHHHHhCCCCCC
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINE-VEKI-GIERTWV--ELKNSDIIIYVQDARYDKHTDFD---KKIIKNFPMNIP 341 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~-~e~~-~i~~~~~--~~~~aD~il~v~D~s~~~~~~~~---~~il~~l~~~~p 341 (472)
..++.+.++||||.... .+. ++.+ .+.+... ....+|.+++|+|+... .+.. ..+.+.. ..
T Consensus 184 ~~~~dvvIiDtpg~~~~-------~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~---~i 251 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHT-------KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV---NV 251 (306)
T ss_dssp HTTCSEEEEEECCCCSC-------HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS---CC
T ss_pred hcCCCEEEEECCCchhh-------HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC---CC
Confidence 13467999999996443 222 2221 0111111 12358899999998743 2222 2222221 22
Q ss_pred EEEEEecCCCCcCcc---cccccCCCceEEEEeccCccHHH
Q psy9409 342 VIYVWNKIDYSGHQK---NINYKNNIANIYLSASKRIGINL 379 (472)
Q Consensus 342 iivV~NK~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~ 379 (472)
.-+|+||.|...... .+....+.|+.+++. |+++++
T Consensus 252 ~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 252 TGIILTKLDGTAKGGITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp CEEEEECGGGCSCTTHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred CEEEEeCCCCccchHHHHHHHHHHCCCEEEEeC--CCChhh
Confidence 457889999754333 233445678777764 444444
No 240
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.21 E-value=0.00027 Score=69.05 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=37.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+-.++++|++|||||||+|.|. .....++.... +|+.. ......+ --.++||||+..+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETT-TEEEESSCCCSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCC-CcEEEECcCcCcC
Confidence 4568999999999999999999 65433343332 33332 1222222 2368899998754
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.21 E-value=0.00078 Score=68.83 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhC------CCcceecccCc---e-----------eeeEEEEE------------E---E
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG------SDVAIVTSIAG---T-----------TRDKITKT------------I---Q 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~------~~~~~v~~~~g---t-----------t~d~~~~~------------~---~ 268 (472)
+-.|+++|++|+||||++..|.+ ..+..+...+. . ..+..... + .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 34588999999999999998874 22211111100 0 01111100 0 0
Q ss_pred eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCC-CEEEEEe
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI-PVIYVWN 347 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~-piivV~N 347 (472)
..++.++|+||||..... ...... +... ...-.+|.+++|+|+... .+... ..+.+.... ..-+|+|
T Consensus 178 ~~~~DvVIIDTaG~l~~d------~~l~~e--l~~i-~~~~~pd~vlLVvDa~tg--q~av~-~a~~f~~~l~i~GVIlT 245 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQID------EPLMGE--LARL-KEVLGPDEVLLVLDAMTG--QEALS-VARAFDEKVGVTGLVLT 245 (425)
T ss_dssp HTTCSEEEEECCCCSSCC------HHHHHH--HHHH-HHHHCCSEEEEEEEGGGT--THHHH-HHHHHHHHTCCCEEEEE
T ss_pred HCCCCEEEEcCCCccccc------HHHHHH--HHHh-hhccCCceEEEEEeccch--HHHHH-HHHHHHhcCCceEEEEe
Confidence 146789999999966430 112222 1111 112258899999998754 22222 222221122 2567999
Q ss_pred cCCCCcCcc---cccccCCCceEEEEeccCccHHHH
Q psy9409 348 KIDYSGHQK---NINYKNNIANIYLSASKRIGINLL 380 (472)
Q Consensus 348 K~Dl~~~~~---~~~~~~~~~~i~vSA~~g~gi~~L 380 (472)
|.|...... .+....+.|+..+. +|+.++++
T Consensus 246 KlD~~~~~g~alsi~~~~g~PI~flg--~Ge~~~dl 279 (425)
T 2ffh_A 246 KLDGDARGGAALSARHVTGKPIYFAG--VSEKPEGL 279 (425)
T ss_dssp SGGGCSSCHHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred CcCCcccHHHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence 999754332 23334577877766 34445543
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00014 Score=72.68 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=36.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc-ceecccC---c----eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV-AIVTSIA---G----TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~-~~v~~~~---g----tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
.+-.++++|++|||||||+|.|++... ..++... | +|+... ...+.. ...++||||+.++
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~--i~~v~q-~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAAR--LYHFPH-GGDVIDSPGVREF 281 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCE--EEECTT-SCEEEECHHHHTC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEE--EEEECC-CCEecCcccHHHh
Confidence 345799999999999999999999765 4333332 2 222211 112211 2357899997664
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.14 E-value=0.0001 Score=72.24 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=56.9
Q ss_pred ccccccEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCcc------cccc---cCCCceEEEEeccCc
Q psy9409 307 ELKNSDIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK------NINY---KNNIANIYLSASKRI 375 (472)
Q Consensus 307 ~~~~aD~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~------~~~~---~~~~~~i~vSA~~g~ 375 (472)
.+.++|.+++|+|+..|.... ....++... ..++|.++|+||+||.+... .+.+ ..+.+++.+||++|.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~ 162 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQD 162 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHT
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 578999999999999774433 334444322 36789999999999987632 1222 246789999999999
Q ss_pred cHHHHHHHHH
Q psy9409 376 GINLLRNTLL 385 (472)
Q Consensus 376 gi~~L~~~l~ 385 (472)
|+++|++...
T Consensus 163 g~~~L~~~~~ 172 (307)
T 1t9h_A 163 SLADIIPHFQ 172 (307)
T ss_dssp TCTTTGGGGT
T ss_pred CHHHHHhhcC
Confidence 9888776543
No 244
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0021 Score=62.73 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=71.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC------CcceecccCc-e-------------eeeEEEEEEE-------------
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAG-T-------------TRDKITKTIQ------------- 268 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~g-t-------------t~d~~~~~~~------------- 268 (472)
..+-.++++|++|||||||++.|.+. .....+.... . ....+.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 34557899999999999999998752 1111110000 0 0011110000
Q ss_pred ---eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC-CchHHHHHHHhCCCCCCEEE
Q psy9409 269 ---INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK-HTDFDKKIIKNFPMNIPVIY 344 (472)
Q Consensus 269 ---~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~-~~~~~~~il~~l~~~~piiv 344 (472)
..+....++||+|...... .....+......-+......++-+++++|++... .......+.+.. + ..++
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~---~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~--g-~t~i 251 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNY---SLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVV--G-ITGL 251 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCH---HHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHT--C-CCEE
T ss_pred HHHHcCCcchHHhcCCCCcchh---HHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhc--C-CCEE
Confidence 1234578999999865410 0011122211222233455688889999966431 111222232222 2 3467
Q ss_pred EEecCCCCcCcc---cccccCCCceEEEE
Q psy9409 345 VWNKIDYSGHQK---NINYKNNIANIYLS 370 (472)
Q Consensus 345 V~NK~Dl~~~~~---~~~~~~~~~~i~vS 370 (472)
+++|.|-...-. .+....+.|+..+.
T Consensus 252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 252 ILTKLDGSARGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp EEECCSSCSCTHHHHHHHHHHCCCEEEEE
T ss_pred EEeCCCCCCccChheehHHHHCCCEEEEe
Confidence 889988653322 23334456666665
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.07 E-value=0.0021 Score=64.23 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=72.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC------CcceecccCce--------------eeeEEEEEEE--------------
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGT--------------TRDKITKTIQ-------------- 268 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~gt--------------t~d~~~~~~~-------------- 268 (472)
.+-.++++|++|||||||++.|.+. .....+..... ....+.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 4557899999999999999998752 11111100000 0000000000
Q ss_pred --eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCC-CchHHHHHHHhCCCCCCEEEE
Q psy9409 269 --INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK-HTDFDKKIIKNFPMNIPVIYV 345 (472)
Q Consensus 269 --~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~-~~~~~~~il~~l~~~~piivV 345 (472)
..+....++||+|...... .....+......-+......++-+++|+|++... .......+.+.. + ..+++
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~---~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~--g-~t~ii 309 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNY---SLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVV--G-ITGLI 309 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCH---HHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHT--C-CCEEE
T ss_pred HHhCCCHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhc--C-CeEEE
Confidence 0134578999999865410 0011122211222223456688889999966431 111222232222 2 34678
Q ss_pred EecCCCCcCcc---cccccCCCceEEEEe
Q psy9409 346 WNKIDYSGHQK---NINYKNNIANIYLSA 371 (472)
Q Consensus 346 ~NK~Dl~~~~~---~~~~~~~~~~i~vSA 371 (472)
++|.|-...-. .+....+.|+..+..
T Consensus 310 iThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 310 LTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp EESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred EecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 99988653322 233345667766653
No 246
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.02 E-value=0.00036 Score=68.08 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=36.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCCcceecccCc-------eeeeEEEEEEEeCCeeEEEEeCCCCCcc
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG-------TTRDKITKTIQINKFLFKITDTAGIPDI 285 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~~~g-------tt~d~~~~~~~~~~~~i~liDTpG~~~~ 285 (472)
+-.++++|++|+|||||+|.|.+......+.... +|+.. ....... --.++||||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~~~~-~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLKFDF-GGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEECTT-SCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEEcCC-CCEEEECcCCCcc
Confidence 3468999999999999999999876543333332 33222 1122221 2368999998764
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=0.00014 Score=66.41 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=40.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc-ceecccCceeeeEEEEEEEeCCeeEEEEeCCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV-AIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~-~~v~~~~gtt~d~~~~~~~~~~~~i~liDTpG~ 282 (472)
.+-.|+|+|++|||||||+++|++... ......+.|||...... .+|..+.++|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 345689999999999999999997543 24456667777654322 56666666666553
No 248
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.77 E-value=0.001 Score=66.35 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=54.4
Q ss_pred hcccccccEEEEEEeCCCCCCch-HHHHHHHhC-CCCCCEEEEEecCCCCcCcc-----cc---cccCCCceEEEEeccC
Q psy9409 305 WVELKNSDIIIYVQDARYDKHTD-FDKKIIKNF-PMNIPVIYVWNKIDYSGHQK-----NI---NYKNNIANIYLSASKR 374 (472)
Q Consensus 305 ~~~~~~aD~il~v~D~s~~~~~~-~~~~il~~l-~~~~piivV~NK~Dl~~~~~-----~~---~~~~~~~~i~vSA~~g 374 (472)
...+.++|.+++|... .|.... .+..++... ..++|.++|+||+||.+... .+ ....+.+++.+||.+|
T Consensus 125 ~~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 125 KPIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3457899999987554 454332 333333211 24678899999999987543 11 1245788999999999
Q ss_pred ccHHHHHHHHH
Q psy9409 375 IGINLLRNTLL 385 (472)
Q Consensus 375 ~gi~~L~~~l~ 385 (472)
.|+++|...+.
T Consensus 204 ~gl~~L~~~~~ 214 (358)
T 2rcn_A 204 DGLKPLEEALT 214 (358)
T ss_dssp BTHHHHHHHHT
T ss_pred cCHHHHHHhcC
Confidence 99999887654
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.001 Score=59.54 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
+-.++|+|++|||||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998743
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.38 E-value=0.0031 Score=61.25 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=69.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC------CcceecccCc---e-----------eeeEEEE-------EE--------E
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAG---T-----------TRDKITK-------TI--------Q 268 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~------~~~~v~~~~g---t-----------t~d~~~~-------~~--------~ 268 (472)
+-.++++|++|+||||++..|.+. ....+...+. . ..+.... .+ .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 446889999999999999988742 2211111000 0 0011100 00 0
Q ss_pred eCCeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCCCCCC-EEEEEe
Q psy9409 269 INKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIP-VIYVWN 347 (472)
Q Consensus 269 ~~~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~~~~p-iivV~N 347 (472)
..++.++++||||....+ ...... +......+ .+|.+++|+|+... .+.... .+.+....+ .-+|+|
T Consensus 178 ~~~~D~viiDtpp~~~~d------~~~~~~--l~~~~~~~-~~~~~~lv~~~~~~--~~~~~~-~~~~~~~~~i~givln 245 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQID------EPLMGE--LARLKEVL-GPDEVLLVLDAMTG--QEALSV-ARAFDEKVGVTGLVLT 245 (295)
T ss_dssp HHTCCEEEEECCCCSSCC------HHHHHH--HHHHHHHH-CCSEEEEEEEGGGT--HHHHHH-HHHHHHHTCCCEEEEE
T ss_pred hCCCCEEEEeCCCCcccc------HHHHHH--HHHHhhhc-CCCEEEEEEeCCCc--HHHHHH-HHHHhhcCCCCEEEEE
Confidence 135689999999865430 111222 11111112 47888999998743 222222 222211222 457999
Q ss_pred cCCCCcCcc---cccccCCCceEEEE
Q psy9409 348 KIDYSGHQK---NINYKNNIANIYLS 370 (472)
Q Consensus 348 K~Dl~~~~~---~~~~~~~~~~i~vS 370 (472)
|.|...... .+....+.|+..++
T Consensus 246 k~d~~~~~g~~~~~~~~~~~pi~~i~ 271 (295)
T 1ls1_A 246 KLDGDARGGAALSARHVTGKPIYFAG 271 (295)
T ss_dssp CGGGCSSCHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCccHHHHHHHHHHHCcCEEEEe
Confidence 999764332 23334567776665
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0014 Score=59.70 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.++|+|++|+|||||++.|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999999874
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.21 E-value=0.0022 Score=58.00 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=42.1
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHH---HHHhCC---CCCCEEE
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKK---IIKNFP---MNIPVIY 344 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~---il~~l~---~~~piiv 344 (472)
.+.++++|||+.... . ....+..+|.+++++..+... ..... .++.+. ...++.+
T Consensus 75 ~yD~viiD~~~~~~~--------~---------~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~v 135 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--------I---------TSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARF 135 (206)
T ss_dssp TSSEEEEECCSSSSH--------H---------HHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEE
T ss_pred CCCEEEEECCCCCCH--------H---------HHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEE
Confidence 478999999986532 1 223455689999999988764 43333 333332 3457799
Q ss_pred EEecCCCC
Q psy9409 345 VWNKIDYS 352 (472)
Q Consensus 345 V~NK~Dl~ 352 (472)
|+||+|..
T Consensus 136 v~N~~~~~ 143 (206)
T 4dzz_A 136 LITRKIEM 143 (206)
T ss_dssp EECSBCTT
T ss_pred EEeccCCC
Confidence 99999843
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.19 E-value=0.0018 Score=58.05 Aligned_cols=24 Identities=29% Similarity=0.704 Sum_probs=21.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.+++|+|++|+|||||++.|.+.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.06 E-value=0.0028 Score=57.89 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|+|++|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999999875
No 255
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.92 E-value=0.018 Score=55.83 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHH---HHHHHhCC--CCCCEE-E
Q psy9409 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD---KKIIKNFP--MNIPVI-Y 344 (472)
Q Consensus 271 ~~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~---~~il~~l~--~~~pii-v 344 (472)
.+.++|+|||+.... . .....+..+|.+|+|+..+.. +.... .+.++.+. .+.+++ +
T Consensus 156 ~yD~ViiD~p~~~~~-------~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gv 218 (307)
T 3end_A 156 DTDVVIFDVLGDVVC-------G---------GFAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGC 218 (307)
T ss_dssp SCSEEEEEECCSSCC-------G---------GGGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEE
T ss_pred cCCEEEEeCCCccch-------H---------HHHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEE
Confidence 468999999886543 1 123456789999999986643 22222 33333332 345544 8
Q ss_pred EEecCCCCcCcccccccCCCceEE
Q psy9409 345 VWNKIDYSGHQKNINYKNNIANIY 368 (472)
Q Consensus 345 V~NK~Dl~~~~~~~~~~~~~~~i~ 368 (472)
|+||++-......+.+..+.+++.
T Consensus 219 V~N~~~~~~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 219 VANRSRATDEVDRFCKETNFRRLA 242 (307)
T ss_dssp EEESCSCCHHHHHHHHHHTCCEEE
T ss_pred EEecCCcHHHHHHHHHHcCCCcee
Confidence 999998432222333344555543
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.89 E-value=0.0037 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+-.|+|+|++|+|||||++.|.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45567999999999999999999886
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.85 E-value=0.0029 Score=57.16 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=26.5
Q ss_pred EEEEecCCCchhHHHHhhhCCCc-ceecccCceeeeE
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSDV-AIVTSIAGTTRDK 262 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~~-~~v~~~~gtt~d~ 262 (472)
|+|+||+|||||||+++|+.... ...-..+.|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 78999999999999999986532 1224556677643
No 258
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.85 E-value=0.0034 Score=56.75 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..|-.++|+|++|+|||||++.|.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34567999999999999999999875
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.82 E-value=0.0036 Score=58.05 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=23.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
+..|--++|+|++|||||||++.|.+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667799999999999999999988543
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.79 E-value=0.0045 Score=56.63 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..+--|+|+|++|||||||++.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999998764
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.77 E-value=0.0039 Score=56.93 Aligned_cols=28 Identities=36% Similarity=0.364 Sum_probs=22.9
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
...|-.++|+|++|||||||++.|.+-.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4556679999999999999999998754
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.66 E-value=0.0039 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|-.++|+|++|+|||||++.|.+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455579999999999999999998743
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.51 E-value=0.0044 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
-++|+|++|||||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999998753
No 264
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.51 E-value=0.012 Score=60.34 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.6
Q ss_pred EEEEEecCCCchhHHHHhhh
Q psy9409 226 NVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~ 245 (472)
-|+|+|++++|||+|+|.|+
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 46799999999999999664
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.45 E-value=0.0071 Score=56.18 Aligned_cols=27 Identities=37% Similarity=0.431 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345568999999999999999999864
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.44 E-value=0.007 Score=56.68 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3455799999999999999999998653
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.41 E-value=0.0059 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.38 E-value=0.0049 Score=56.05 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..+..|+|+|++|||||||.+.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445677999999999999999999754
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.36 E-value=0.0065 Score=54.84 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..+..|+|+|++|+||||+++.|.+.-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356679999999999999999998754
No 270
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.35 E-value=0.0035 Score=57.46 Aligned_cols=108 Identities=11% Similarity=0.078 Sum_probs=60.4
Q ss_pred EEEE-ecCCCchhHHHHhhhC----C-CcceecccCcee-e----------eEEEEE-E--EeCCeeEEEEeCCCC-Ccc
Q psy9409 227 VVLI-GQPNVGKSSLFNSLVG----S-DVAIVTSIAGTT-R----------DKITKT-I--QINKFLFKITDTAGI-PDI 285 (472)
Q Consensus 227 V~iv-G~~nvGKSSLin~L~~----~-~~~~v~~~~gtt-~----------d~~~~~-~--~~~~~~i~liDTpG~-~~~ 285 (472)
|+++ +..|+||||+.-.|.. . +...+.-.+..+ . +..... + -.+.+.++++|||+. ...
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~~ 82 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPEDE 82 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSSS
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCcH
Confidence 5554 6789999999877641 1 333322222110 0 000000 0 013578999999996 432
Q ss_pred ccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchH---HHHHHHhCCCCCCEEEEEecCCCCc
Q psy9409 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDF---DKKIIKNFPMNIPVIYVWNKIDYSG 353 (472)
Q Consensus 286 ~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~---~~~il~~l~~~~piivV~NK~Dl~~ 353 (472)
. +...+..+|.+|+++..+.. .... ..+.++.+. +.++.+|+|+.|...
T Consensus 83 --------~---------~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 83 --------D---------LEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp --------H---------HHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred --------H---------HHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 1 22345679999999987653 2222 223333332 567889999998653
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.34 E-value=0.006 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..|+|+|++|+||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999764
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.28 E-value=0.0084 Score=56.18 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=23.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455799999999999999999998643
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.25 E-value=0.0079 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|--++++|++|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 445689999999999999998654
No 274
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.23 E-value=0.011 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.++++|++|+|||||++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998764
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.20 E-value=0.009 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.17 E-value=0.0092 Score=56.63 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=23.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455799999999999999999998643
No 277
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.17 E-value=0.0074 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|-.++++|+.|+|||||++.|.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455679999999999999999998754
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.0084 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEecCCCchhHHHHhhhCCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.16 E-value=0.0092 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345579999999999999999999864
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.16 E-value=0.0094 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.15 E-value=0.0083 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.|=.++|+|++|+|||||++.|.|-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999864
No 282
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.14 E-value=0.0097 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455699999999999999999998643
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.009 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.12 E-value=0.0095 Score=56.89 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=23.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3455799999999999999999998643
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.07 E-value=0.01 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345579999999999999999999853
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.07 E-value=0.01 Score=55.66 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.04 E-value=0.012 Score=55.15 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhh---CCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLV---GSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~---~~~ 248 (472)
.+..|+|+|++|+|||||++.|. +-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35689999999999999999999 654
No 288
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.04 E-value=0.011 Score=55.97 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.03 E-value=0.011 Score=56.40 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=23.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345579999999999999999999864
No 290
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.02 E-value=0.0096 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+|+|++|+|||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998753
No 291
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=95.01 E-value=0.063 Score=53.78 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=46.5
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|-.++|+|+||+|...++.++......+++....|+.+.+++|.++|+.++..+
T Consensus 54 s~~g~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~ 107 (375)
T 1wsr_A 54 SHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNT 107 (375)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEEC
T ss_pred CceEEEEEECCCHHHHHHHhcccccCcCCCCCEEEEEEECCCCeEEEEEEEEEE
Confidence 345789999999999999999765555778999999999999999999987765
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.01 E-value=0.011 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.98 E-value=0.011 Score=56.84 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=23.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3555799999999999999999998643
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.95 E-value=0.0095 Score=58.03 Aligned_cols=26 Identities=46% Similarity=0.631 Sum_probs=22.9
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...|=.++|+|++|+|||||++.|.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 45666899999999999999999885
No 295
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.95 E-value=0.0081 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=17.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhh-CCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLV-GSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~-~~~ 248 (472)
..|-.++|+|++|||||||++.|. +..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 455679999999999999999999 753
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.94 E-value=0.012 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999999864
No 297
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=94.93 E-value=0.075 Score=52.96 Aligned_cols=77 Identities=18% Similarity=0.132 Sum_probs=58.0
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcHHHHHHH
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHML 97 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~~~~~~~ 97 (472)
|--++|+|+||+|..-++.++.......++....|+.+.+++|.++|+.++..+ ++| ++-...+......+
T Consensus 49 s~~~~i~v~G~da~~fL~~l~t~dv~~l~~g~~~yt~~ln~~G~i~~d~~v~r~-------~~d--~~ll~~~a~~~~~~ 119 (364)
T 1wos_A 49 SHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKV-------SPD--EALMVVNAANIEKD 119 (364)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEE-------ETT--EEEEEECGGGHHHH
T ss_pred CCcEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE-------eCC--EEEEEECcccHHHH
Confidence 446899999999999999999765555788999999999999999999988765 455 34444444445556
Q ss_pred HHHHHh
Q psy9409 98 LSSCLE 103 (472)
Q Consensus 98 ~~~~~~ 103 (472)
++.|.+
T Consensus 120 ~~~L~~ 125 (364)
T 1wos_A 120 FNWIKS 125 (364)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 655544
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.93 E-value=0.012 Score=56.23 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..|=.++|+|++|+|||||++.|.|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999996
No 299
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.92 E-value=0.015 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 300
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.92 E-value=0.012 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..|=.++|+|++|+|||||++.|.|-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557999999999999999999996
No 301
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.89 E-value=0.0011 Score=68.73 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+.+|+++|.||+||||+.++|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999754
No 302
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.88 E-value=0.13 Score=49.83 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=39.4
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCC-EEEEEecC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIP-VIYVWNKI 349 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~p-iivV~NK~ 349 (472)
+.++|+|||+.... .+ +......+|.+|+|+...... .......++.+. .+.+ .-+|+|++
T Consensus 214 yD~VIIDtpp~~~~-------~d---------~~~l~~~ad~vilV~~~~~~~-~~~~~~~~~~l~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 214 YDLVIVDTPPMLAV-------SD---------AAVVGRSVGTSLLVARFGLNT-AKEVSLSMQRLEQAGVNIKGAILNGV 276 (299)
T ss_dssp CSEEEEECCCTTTC-------TH---------HHHHGGGCSEEEEEEETTTSC-TTHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CCEEEEcCCCCchh-------HH---------HHHHHHHCCEEEEEEcCCCCh-HHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 46899999997654 22 112335689999999887653 233333333321 2333 33788999
Q ss_pred CCCc
Q psy9409 350 DYSG 353 (472)
Q Consensus 350 Dl~~ 353 (472)
|...
T Consensus 277 ~~~~ 280 (299)
T 3cio_A 277 IKRA 280 (299)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.85 E-value=0.013 Score=55.60 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=23.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3455799999999999999999998643
No 304
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=94.85 E-value=0.068 Score=53.89 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=47.1
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|.-+.|+|+||+|...++.++.......++..+.|+.+.+++|.++|+.++...
T Consensus 82 Sh~g~i~V~G~DA~~fL~~l~tndv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl 135 (393)
T 3gir_A 82 SHMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRL 135 (393)
T ss_dssp TTSEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCcEEEEEECCCHHHHhhhhcccccccCCCCcEEEEEEECCCCcEEEEEEEEEe
Confidence 456899999999999999999765555788999999999999999999998765
No 305
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=94.84 E-value=0.072 Score=53.13 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=56.7
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcHHHHHHH
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHML 97 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~~~~~~~ 97 (472)
|--++|+|+||+|..-++.++......+++....|+.+.+++|.++|+.++..+ ++| ++-...+......+
T Consensus 53 s~~~~i~v~G~da~~fLq~l~t~dv~~l~~g~~~y~~~ln~~G~i~~d~~v~r~-------~~d--~~ll~~~a~~~~~~ 123 (365)
T 1yx2_A 53 SHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQK-------GEN--RYLLVINASNIDKD 123 (365)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEE-------ETT--EEEEEECGGGHHHH
T ss_pred CCeEEEEEECCCHHHHHHHhcccccccCCCCCEEEEEEECCCCeEEEEEEEEEE-------eCC--EEEEEECcccHHHH
Confidence 345799999999999999998765445788899999999999999999987765 455 33333344444555
Q ss_pred HHHHHh
Q psy9409 98 LSSCLE 103 (472)
Q Consensus 98 ~~~~~~ 103 (472)
++.|-+
T Consensus 124 ~~~L~~ 129 (365)
T 1yx2_A 124 LAWMKE 129 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.82 E-value=0.013 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345579999999999999999999864
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.77 E-value=0.032 Score=55.53 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 455689999999999999999999654
No 308
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.75 E-value=0.0098 Score=54.60 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|=.++|+|++|+|||||++.|.+-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456999999999999999999986
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.74 E-value=0.01 Score=57.85 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.+--
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456689999999999999999999854
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.74 E-value=0.015 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.71 E-value=0.012 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+-.++|+|++|+|||||++.|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45557999999999999999999874
No 312
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.69 E-value=0.1 Score=49.71 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC-CCCCEE-EEEecC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVI-YVWNKI 349 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~-~~~pii-vV~NK~ 349 (472)
+.++|+|||+.... .+ +......+|.+|+|+..... ........++.+. .+.+++ +|+|++
T Consensus 192 yD~VIIDtpp~~~~-------~d---------~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~~~~~~~GvVlN~~ 254 (271)
T 3bfv_A 192 YNFVIIDTPPVNTV-------TD---------AQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEATGAKLLGVVLNRM 254 (271)
T ss_dssp CSEEEEECCCTTTC-------SH---------HHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred CCEEEEeCCCCchH-------HH---------HHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 46899999997653 21 11133468999999998764 3333444444332 355655 899999
Q ss_pred CCCc
Q psy9409 350 DYSG 353 (472)
Q Consensus 350 Dl~~ 353 (472)
|...
T Consensus 255 ~~~~ 258 (271)
T 3bfv_A 255 PKDK 258 (271)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8644
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.67 E-value=0.011 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+++++|++|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998874
No 314
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.65 E-value=0.017 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|+|++|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566799999999999999999875
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.63 E-value=0.012 Score=55.13 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...+..|+|+|++|+|||||++.|.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998763
No 316
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.63 E-value=0.014 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 317
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=94.62 E-value=0.098 Score=51.58 Aligned_cols=78 Identities=5% Similarity=-0.045 Sum_probs=61.1
Q ss_pred CceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcHHHHHH
Q psy9409 17 RGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHM 96 (472)
Q Consensus 17 ~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~~~~~~ 96 (472)
.|--++|||+||+|..-++.++.......++....|+.+.+++|.++|+.++... +| ++-...+......
T Consensus 36 lS~~~~i~v~G~DA~~fLq~l~tndv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~-------~~---~~~lv~~a~~~~~ 105 (338)
T 1vly_A 36 LDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRD-------GD---GFAWIERRSVREP 105 (338)
T ss_dssp CTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEE-------TT---EEEEEEEHHHHHH
T ss_pred CCCcEEEEEECCCHHHHhcchhhhcccccCCCceEEEEEECCCCCEEEEEEEEEe-------CC---cEEEEecchhhHH
Confidence 3556899999999999999998765455788889999999999999999988765 23 4555556667777
Q ss_pred HHHHHHhc
Q psy9409 97 LLSSCLEI 104 (472)
Q Consensus 97 ~~~~~~~~ 104 (472)
.++.|.+.
T Consensus 106 ~~~~L~~~ 113 (338)
T 1vly_A 106 QLTELKKY 113 (338)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77766554
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.61 E-value=0.012 Score=57.51 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...+..|+|+|++|+|||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999999874
No 319
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.59 E-value=0.02 Score=54.65 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=20.0
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|+|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999864
No 320
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.58 E-value=0.21 Score=47.87 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=41.9
Q ss_pred eeEEEEeCCCCCccccccccchhHHHHHhHHhhhcccccccEEEEEEeCCCCCCchHHHHHHHhCC--CCCCEEEEEecC
Q psy9409 272 FLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--MNIPVIYVWNKI 349 (472)
Q Consensus 272 ~~i~liDTpG~~~~~~~~~~~~~~~e~~~i~~~~~~~~~aD~il~v~D~s~~~~~~~~~~il~~l~--~~~piivV~NK~ 349 (472)
+.++|+|||+.... .+ +......+|.+|+|+..... ........++.+. ....+-+|+||+
T Consensus 202 yD~VIIDtpp~~~~-------~d---------a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g~~~~GvVlN~v 264 (286)
T 3la6_A 202 YDLVLIDTPPILAV-------TD---------AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNGIPVKGVILNSI 264 (286)
T ss_dssp CSEEEEECCCTTTC-------TH---------HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred CCEEEEcCCCCcch-------HH---------HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEcCc
Confidence 46899999997654 22 22345679999999998865 3333333333332 223456899999
Q ss_pred CCCcC
Q psy9409 350 DYSGH 354 (472)
Q Consensus 350 Dl~~~ 354 (472)
|....
T Consensus 265 ~~~~~ 269 (286)
T 3la6_A 265 FRRAS 269 (286)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 86543
No 321
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.57 E-value=0.016 Score=57.87 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=24.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.+.+-.++|+|++|+|||||++.|++.-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456679999999999999999999853
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.56 E-value=0.014 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|+++|++|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.55 E-value=0.018 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=23.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3455799999999999999999998643
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.53 E-value=0.014 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|+|+|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 325
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=94.52 E-value=0.086 Score=53.29 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=46.7
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|-.++|+|+||+|...++.++......+++....|+.+.+++|.++|+.+++..
T Consensus 53 s~~~~i~v~G~Da~~fLq~l~t~dv~~l~~g~~~yt~~ln~~G~i~~D~~v~r~ 106 (401)
T 1v5v_A 53 SHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNM 106 (401)
T ss_dssp TTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCcEEEEEECCCHHHHHHHhhccccCcCCCCCEEEEEEECCCCcEEEEEEEEEe
Confidence 445799999999999999999765555788899999999999999999988765
No 326
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=94.52 E-value=0.093 Score=52.68 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=46.4
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCC-CCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQL-KPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|-.++|+|+||+|...++.++......+ ++....|+.+.+++|.++|+.++..+
T Consensus 62 S~~g~i~v~G~DA~~fLq~l~t~dv~~l~~~g~~~yt~~ln~~G~i~~D~~v~r~ 116 (381)
T 1vlo_A 62 SHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYF 116 (381)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCcEEEEEECCCHHHHHHHhccccccccCCCCCEEEEEEECCCCcEEEEEEEEEE
Confidence 4468999999999999999987654456 78899999999999999999987765
No 327
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.50 E-value=0.46 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.3
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-.++|.|+||+|||+++.++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.49 E-value=0.018 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|+|++|+||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999998764
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.49 E-value=0.018 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|+|++|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999886
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.48 E-value=0.035 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|+|++|+|||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988764
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.44 E-value=0.019 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999764
No 332
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.048 Score=55.71 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 197 FFNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 197 l~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.+..+.+++.+...+........ .+.+--|.+.||||+|||+|..++.+.
T Consensus 186 l~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 186 LTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345556666666665555443322 233446999999999999999999864
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.39 E-value=0.019 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++|+|++|+|||||++.|.|-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5579999999999999999999864
No 334
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.38 E-value=0.02 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.6
Q ss_pred CEEEEEecCCCchhHHHHhh
Q psy9409 225 LNVVLIGQPNVGKSSLFNSL 244 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L 244 (472)
+.|+|.|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.34 E-value=0.022 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|+|++|+||||+.+.|..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 336
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.31 E-value=0.047 Score=54.65 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 445689999999999999999998653
No 337
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.27 E-value=0.017 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.+-.++|+|++|+|||||++.|.+.-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999853
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.27 E-value=0.041 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|++.|+|||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 339
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.25 E-value=0.027 Score=53.00 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+++|+||+||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999998653
No 340
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.24 E-value=0.01 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 341
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.24 E-value=0.049 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-++++|+||+|||||++++.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 342
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.24 E-value=0.022 Score=50.71 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.21 E-value=0.019 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.2
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+|+|+|++|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 344
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.19 E-value=0.024 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 345
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.18 E-value=0.022 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.17 E-value=0.057 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|+|++|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999998873
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.16 E-value=0.038 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+-|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998865
No 348
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.12 E-value=0.018 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+--++|+|++|+|||||++.|++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44456999999999999999999873
No 349
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.09 E-value=0.023 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~ 245 (472)
..|=-++|+|++|+|||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 445569999999999999999887
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.04 E-value=0.023 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..++++|++|+|||||+++|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.02 E-value=0.028 Score=50.85 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999875
No 352
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.02 E-value=0.023 Score=59.47 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=22.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.+-.++|+|++|+|||||+|+|++.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567999999999999999999874
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.01 E-value=0.028 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhh
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~ 245 (472)
..+..|+|+|++|+||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999998
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.00 E-value=0.026 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=19.7
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
++|+|.|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 355
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.99 E-value=0.025 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.+-..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 455699999999999999999998653
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.97 E-value=0.031 Score=49.78 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=22.4
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..+..|+|.|.+|+||||+.+.|..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999864
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.97 E-value=0.025 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.2
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+.|+|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 358
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.94 E-value=0.038 Score=54.90 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455689999999999999999998653
No 359
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.92 E-value=0.026 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|++.|+||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.92 E-value=0.026 Score=56.16 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 455699999999999999999998653
No 361
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.89 E-value=0.027 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
++|+|.|+||+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 362
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.88 E-value=0.027 Score=56.10 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 455689999999999999999998643
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.86 E-value=0.03 Score=50.62 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999875
No 364
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.86 E-value=0.019 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
+-+++|+|++|+|||||++.|.+.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998854
No 365
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.81 E-value=0.029 Score=50.22 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.78 E-value=0.029 Score=55.98 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 445689999999999999999998653
No 367
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.78 E-value=0.023 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.++++|++|+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999874
No 368
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.78 E-value=0.032 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..|++.|++|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998763
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.76 E-value=0.033 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.++.|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 370
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.76 E-value=0.029 Score=56.27 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 455689999999999999999998654
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.69 E-value=0.031 Score=56.01 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
..|=.++|+|++|+|||||++.|.|-..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3455689999999999999999998643
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.68 E-value=0.029 Score=51.94 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..|.-|+|.|+.|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45667999999999999999999875
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.67 E-value=0.03 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...|+|+|++|+||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998653
No 374
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.66 E-value=0.035 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=22.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998764
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.64 E-value=0.032 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 376
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.62 E-value=0.023 Score=56.58 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|+|++|+|||||++++++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999864
No 377
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=93.53 E-value=0.052 Score=49.80 Aligned_cols=79 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccC--CCCCceeEeeEEEcCCCceeceEEEEEeCCCCCccCCceEEEeccCcHHHH-
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKK--QLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIIL- 94 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~p~s~tged~~E~~~hG~~~~~- 94 (472)
.+.++|.|+||+|.+++++++..... .+++.......+ .+ + ++++. + ||||-+||+|--+-+.-
T Consensus 119 ~~~a~lalqGP~A~~vL~~l~~~dl~~~~~~~~~~~~~~v---~g--~-~v~v~--R-----tGEdGfEI~v~~~~A~~l 185 (210)
T 2gag_C 119 ANRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV---AN--I-PVLLW--R-----TGEQAWRIMPRASFTEHT 185 (210)
T ss_dssp TTBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE---TT--E-EEEEE--E-----EETTEEEEEEBGGGHHHH
T ss_pred CCEEEEEEECHhHHHHHHhhCcccCCcccCCCCcEEEEEE---CC--E-EEEEE--E-----eCCCEEEEEEEHHHHHHH
Confidence 45788999999999999999753322 144444433333 12 1 34433 3 99999999998776543
Q ss_pred -HHHHHHHHhcCCCCCeeEc
Q psy9409 95 -HMLLSSCLEIGKSIGLRLA 113 (472)
Q Consensus 95 -~~~~~~~~~~~~~~g~r~a 113 (472)
+.++++..+. |++++
T Consensus 186 w~~Ll~a~~~~----G~~~~ 201 (210)
T 2gag_C 186 VHWLVDAMSEF----ASEAV 201 (210)
T ss_dssp HHHHHHHHHGG----GC---
T ss_pred HHHHHHHHHHc----CCeEE
Confidence 7777776666 77765
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.51 E-value=0.038 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|+|.|++|+||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 379
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.51 E-value=0.036 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.50 E-value=0.036 Score=55.87 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|-.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345579999999999999999999854
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.49 E-value=0.026 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=23.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 445689999999999999999998653
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.49 E-value=0.04 Score=49.20 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998653
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.46 E-value=0.045 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...+++|+|.|+||+||||+.+.|..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999974
No 384
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=93.41 E-value=0.12 Score=51.26 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=47.5
Q ss_pred CceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 17 RGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 17 ~~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
.|--++|+|+||+|..-++.++......+++....|+.+.+++|.++|+.++...
T Consensus 42 lS~~g~i~v~G~DA~~fLq~l~tndv~~l~~g~~~y~~~ln~~G~i~~D~~v~r~ 96 (355)
T 3ttg_A 42 SVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFDAWCGNF 96 (355)
T ss_dssp SSCCCCEEEESTTHHHHHHTTBSSCCSSCCTTBEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCCcEEEEEECCCHHHHHhhhhhhccccCCCCCEEEEEEECCCceEEEEEEEEEE
Confidence 3556899999999999999998765555788999999999999999999998765
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.38 E-value=0.042 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.7
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..++.|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999864
No 386
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.38 E-value=0.066 Score=46.77 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+-.++|.|++|+|||+|++++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998764
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.31 E-value=0.038 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.++.|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999965
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.30 E-value=0.03 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+-.|+|+|++|+|||||++.|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456999999999999999999874
No 389
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.28 E-value=0.071 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..|++.|+||+|||||++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999763
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.24 E-value=0.043 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.8
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
++|+|.|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 391
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.23 E-value=0.045 Score=48.38 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.21 E-value=0.034 Score=49.38 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|+++|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667999999999999999998753
No 393
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.21 E-value=0.15 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=18.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhh
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~ 245 (472)
.++ .+|+|++|+|||||++++.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 6699999999999999976
No 394
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.20 E-value=0.044 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
....|+|+|++|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999999865
No 395
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.074 Score=53.65 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 197 FFNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 197 l~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.+..+++++.+.-.+...+.-.. .+.+--|.+.||||+|||+|..++.+.
T Consensus 153 l~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 153 LTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344555555555555554433222 233345999999999999999999764
No 396
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.17 E-value=0.042 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.16 E-value=0.11 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..+.|.|+||+|||+|++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557999999999999999999654
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.11 E-value=0.045 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
No 399
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.033 Score=57.41 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
...|-.++|+|++|+|||||++.|++-.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3467789999999999999999998754
No 400
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.07 E-value=0.044 Score=48.33 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|++.|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 445699999999999999999874
No 401
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.03 E-value=0.11 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-.|.+.|+||+|||+|..++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999764
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.98 E-value=0.046 Score=48.25 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
-.+|+|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 403
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.97 E-value=0.12 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..+.|.|+||+|||++..++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987664
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.93 E-value=0.056 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.++.|+|.|.||+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 405
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.92 E-value=0.047 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|+|+|++|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 406
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.91 E-value=0.05 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.7
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 407
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.84 E-value=0.13 Score=43.68 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..|.+.|+||+|||++..++...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3457999999999999999998765
No 408
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.82 E-value=0.036 Score=56.42 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-.|+|+|++|+|||||+++|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999863
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.81 E-value=0.052 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.2
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
++|+++|+|||||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 410
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.80 E-value=0.09 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..|.+.|+||+|||++..++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.62 E-value=0.055 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 412
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.62 E-value=0.055 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++++|++|+|||||++.|.+-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3479999999999999999999864
No 413
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.59 E-value=0.13 Score=43.72 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|.|.|+||+|||++..++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998754
No 414
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.55 E-value=0.031 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|.|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.55 E-value=0.047 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.6
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=+++|+|++|+|||||++.|.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998864
No 416
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.55 E-value=0.057 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.4
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..|--++|+|++|+|||||++.+++
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3455689999999999999999884
No 417
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.52 E-value=0.18 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.1
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+-.|.+.|+||+|||+|++++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34456999999999999999999864
No 418
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.51 E-value=0.051 Score=47.67 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
+|+|+|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 419
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.50 E-value=0.058 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999853
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.45 E-value=0.084 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=22.7
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...+..|+++|.+|+||||+.+.|...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345677999999999999999998653
No 421
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.43 E-value=0.054 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++++|++|+|||||++.|.+--
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4479999999999999999999864
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.39 E-value=0.066 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.0
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..++.|+|.|++|+||||+.+.|..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 423
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.38 E-value=0.12 Score=47.19 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.++|.|++|+|||+|+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998754
No 424
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.38 E-value=0.065 Score=47.45 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.2
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 425
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.32 E-value=0.067 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 426
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.28 E-value=0.055 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=16.5
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.26 E-value=0.062 Score=49.83 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..|++.|++|+||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998753
No 428
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.25 E-value=0.071 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..++++|++|+|||||+++|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 429
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.22 E-value=0.056 Score=57.61 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++|+|++|+|||||++.|.+--
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4479999999999999999999864
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.21 E-value=0.068 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.5
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+.|+|.|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.19 E-value=0.045 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.++|+|+.|+|||||+|.|++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999964
No 432
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.18 E-value=0.071 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 433
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.18 E-value=0.062 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.|=.++++|++|+|||||++.|.+--
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999999864
No 434
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.15 E-value=0.061 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..|--++|+|++|+|||||++.+++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 344556999999999999999998764
No 435
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.12 E-value=0.063 Score=47.38 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.5
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..|+|+|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999998864
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.11 E-value=0.092 Score=45.74 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=20.6
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...++|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988754
No 437
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.10 E-value=0.062 Score=57.27 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++++|++|+|||||++.|.+--
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4479999999999999999999864
No 438
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.07 E-value=0.051 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=20.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.++++|+||+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999874
No 439
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.01 E-value=0.068 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
|=.++++|++|+|||||++.|.+--
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4479999999999999999999854
No 440
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.97 E-value=0.19 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
....|+|.|+||+|||+|..++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999753
No 441
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.89 E-value=0.081 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 442
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.89 E-value=0.22 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...|+|.|+||+|||+|..++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999654
No 443
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.87 E-value=0.15 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 444
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.86 E-value=0.084 Score=47.78 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=21.8
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+--++|+|++|+|||||+..+++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999999986
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.84 E-value=0.086 Score=48.73 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.9
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999865
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.077 Score=56.63 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.|=.++|+|++|+|||||++.|.|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45579999999999999999999854
No 447
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.13 Score=52.38 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 198 FNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 198 ~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..+.+++.+...+...+.-.. .+.+-.|.+.||||+|||+|..++.+.
T Consensus 187 ~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 187 DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 44555666666665555443222 233446999999999999999999864
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.77 E-value=0.076 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
.|=.++|+|++|+|||||++.|.|.-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34468999999999999999999853
No 449
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.77 E-value=0.22 Score=48.57 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=22.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+..+.|.|+||+|||++++.++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 450
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.74 E-value=0.14 Score=50.38 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.++|.|++|+|||||++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999998864
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.72 E-value=0.081 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=23.3
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
..|=.++|+|++|+|||||++.|.|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 455579999999999999999999853
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.71 E-value=0.07 Score=54.62 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.1
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~~ 248 (472)
...|=+++|+|++|+|||||++.|.+..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3456689999999999999999998864
No 453
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.14 Score=52.23 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 198 FNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 198 ~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..+.+++.+...+...+.... .+.+--|.+.||||+|||+|..++.+.
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44555555555555554433222 223335999999999999999999764
No 454
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.69 E-value=0.079 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
+-.|+|+|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999865
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.58 E-value=0.084 Score=45.44 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=17.4
Q ss_pred EEEEecCCCchhHHHHhhh
Q psy9409 227 VVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~ 245 (472)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999999975
No 456
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.56 E-value=0.079 Score=49.88 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|+|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.54 E-value=0.12 Score=47.04 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVA 250 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~ 250 (472)
.+..|+|+|++|+|||||...|...-..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~~ 60 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGHR 60 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCCe
Confidence 3456999999999999999999876543
No 458
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.15 Score=51.68 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 197 FFNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 197 l~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.+..+.+++.+...+...+..+. .+.+--|.+.||||+|||+|..++.+.
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 455666666666665655443332 233446999999999999999999875
No 459
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.50 E-value=0.064 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.9
Q ss_pred CEEEEEecCCCchhHHHHhhhC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~ 246 (472)
-.++|+|++|+|||||++.|.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999886
No 460
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.45 E-value=0.091 Score=48.34 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.8
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+..+--++|+|++|+|||||+..|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345557999999999999999999874
No 461
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.40 E-value=0.18 Score=48.13 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.|.+.|+||+|||+|++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999764
No 462
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.35 E-value=0.081 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.4
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
...+-.++++|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34556799999999999999999986
No 463
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.30 E-value=0.19 Score=44.81 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.6
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+.+.|++|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 464
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.29 E-value=0.09 Score=45.69 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 465
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.26 E-value=0.092 Score=49.49 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=22.2
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+.+..|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998764
No 466
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=91.25 E-value=0.17 Score=50.53 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=46.6
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|--+.|+|+||+|..-++.++.......++.+..|+.+.+++|.++|+.++...
T Consensus 61 Sh~g~i~v~G~DA~~fL~~l~t~dv~~L~~G~~~yt~~ln~~G~i~dD~~v~r~ 114 (369)
T 3tfi_A 61 AAERQVEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKL 114 (369)
T ss_dssp TTSCEEEEESTTHHHHHHHHBSSCCTTCCTTBEEECCEECTTSCEEECCEEEEE
T ss_pred CCCEEEEEECCCHHHHHhhhcccccccCCCCcEEEEEEECCCCCEEEEEEEEEe
Confidence 445799999999999999998765555788999999999999999999998765
No 467
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.19 E-value=0.15 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=20.5
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+.-+.+.|+||+|||+|..++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998753
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.14 E-value=0.097 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|++|+|||||++.|.|-..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455689999999999999999998643
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.12 E-value=0.097 Score=55.05 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|+.|+|||||++.|.|...
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455799999999999999999999643
No 470
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=91.04 E-value=0.41 Score=53.93 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=47.0
Q ss_pred ceEEEEEeecccHHHHHHHHhhcccCCCCCceeEeeEEEcCCCceeceEEEEEe
Q psy9409 18 GGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYF 71 (472)
Q Consensus 18 ~ai~iiR~sG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 71 (472)
|-.+.|+|+||+|..-++.++......+++....|+.+.+++|.++|+.++...
T Consensus 630 S~~g~i~v~G~da~~fL~~l~t~dv~~l~~g~~~y~~~l~~~G~i~~D~~v~r~ 683 (965)
T 2gag_A 630 TTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRL 683 (965)
T ss_dssp TTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEE
T ss_pred CceEEEEEeCcCHHHHHHHhhccCCCcCCCCCEEEEEEECCCCcEEEEEEEEEE
Confidence 456899999999999999999765555788999999999999999999988765
No 471
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.97 E-value=0.16 Score=51.97 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHh--hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 196 DFFNELIKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 196 ~l~~~l~~l~~~l~~~~~~~~~~~~--~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+.+..+.|++.+...+...+.... .+.+--|.+.|+||+|||+|..++.+.
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3444555555555554554443222 234456999999999999999999764
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.94 E-value=0.12 Score=47.82 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.2
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+..|+|+|++|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 473
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.80 E-value=0.22 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.72 E-value=0.11 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.2
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.|=.++|+|+.|+|||||++.|.|...
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355689999999999999999998643
No 475
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.63 E-value=0.12 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+.|+|.|++|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999865
No 476
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.57 E-value=0.2 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.-.|+|.|+||+|||+|..++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.54 E-value=0.13 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=20.1
Q ss_pred CCEEEEEecCCCchhHHHHhhh
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~ 245 (472)
.+.|+|.|.+|+||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 478
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.46 E-value=0.13 Score=44.60 Aligned_cols=21 Identities=48% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 479
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.41 E-value=0.13 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.5
Q ss_pred CEEEEEecCCCchhHHHHhhhCC
Q psy9409 225 LNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 225 ~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-.|+|+|+||+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999863
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.30 E-value=0.093 Score=55.31 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.9
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...+..|+|+|++|+|||||.+.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 456788999999999999999999875
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.30 E-value=0.099 Score=60.95 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
|=+|+|+|++|+|||||++.|.+-
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 458999999999999999999874
No 482
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.24 E-value=0.29 Score=48.29 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
+-.+.|.|++|+|||+|++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998764
No 483
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.17 E-value=0.15 Score=53.55 Aligned_cols=25 Identities=44% Similarity=0.631 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+..++++|+||+|||||++++.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999998754
No 484
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.05 E-value=0.25 Score=51.27 Aligned_cols=22 Identities=41% Similarity=0.809 Sum_probs=20.1
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.|+|+|+||+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 485
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.90 E-value=0.2 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
.+-.+.|.|++|+|||||++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998764
No 486
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.90 E-value=0.16 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.7
Q ss_pred EEEEEecCCCchhHHHHhhhCC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~ 247 (472)
-|.|+|+|||||+|....|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999988753
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.77 E-value=0.14 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHhhhCCCc
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVGSDV 249 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~~~~ 249 (472)
.++|+|++|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999999999998654
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.76 E-value=0.16 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.5
Q ss_pred hCCCEEEEEecCCCchhHHHHhhhC
Q psy9409 222 RNGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 222 ~~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
..+--++|+|++|+|||||+..+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3455699999999999999999886
No 489
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.67 E-value=0.066 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.6
Q ss_pred hhCCCEEEEEecCCCchhHHHHhhh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L~ 245 (472)
...| .++|+|++|+|||||+++|.
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHH
Confidence 3456 89999999999999998873
No 490
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.65 E-value=1.6 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEEecCCCchhHHHHhhhCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~ 247 (472)
+.+.|+||+|||+++.++...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455567999999999999653
No 491
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.56 E-value=0.16 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=21.0
Q ss_pred hhCCCEEEEEecCCCchhHHHHhh
Q psy9409 221 IRNGLNVVLIGQPNVGKSSLFNSL 244 (472)
Q Consensus 221 ~~~~~~V~ivG~~nvGKSSLin~L 244 (472)
.+...||+++|.+++|||||+..+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 356789999999999999999986
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.47 E-value=0.16 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
..+.|+|.|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998754
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.44 E-value=0.38 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCchhHHHHhhhC
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+..+.+.|+||+|||++.+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999865
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.39 E-value=0.29 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCchhHHHHhhhCC
Q psy9409 224 GLNVVLIGQPNVGKSSLFNSLVGS 247 (472)
Q Consensus 224 ~~~V~ivG~~nvGKSSLin~L~~~ 247 (472)
...|.+.|+||+|||+|..++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999654
No 495
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.38 E-value=0.16 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.++|.|++|+|||||+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 496
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.31 E-value=0.028 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.1
Q ss_pred EEEEecCCCchhHHHHhhhCCC
Q psy9409 227 VVLIGQPNVGKSSLFNSLVGSD 248 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~~~~ 248 (472)
++|+|++|+|||||++++.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999998743
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.29 E-value=0.19 Score=48.87 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=25.6
Q ss_pred CCCEEEEEecCCCchhHHHHhhhCCCcceecc
Q psy9409 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTS 254 (472)
Q Consensus 223 ~~~~V~ivG~~nvGKSSLin~L~~~~~~~v~~ 254 (472)
.|.-|++.|++|+||||+.+.|+......+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 45679999999999999999999865444333
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.22 E-value=0.14 Score=46.77 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.4
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.+++.|+||+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998888764
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.99 E-value=0.17 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.4
Q ss_pred EEEEEecCCCchhHHHHhhhC
Q psy9409 226 NVVLIGQPNVGKSSLFNSLVG 246 (472)
Q Consensus 226 ~V~ivG~~nvGKSSLin~L~~ 246 (472)
.|++.|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.98 E-value=0.18 Score=45.66 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=17.2
Q ss_pred EEEEecCCCchhHHHHhhh
Q psy9409 227 VVLIGQPNVGKSSLFNSLV 245 (472)
Q Consensus 227 V~ivG~~nvGKSSLin~L~ 245 (472)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6889999999999999874
Done!