RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9409
(472 letters)
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 528 bits (1363), Expect = 0.0
Identities = 164/480 (34%), Positives = 261/480 (54%), Gaps = 34/480 (7%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNN 60
+ I+ +ATPPG+G + I+RLSG + W IV+ + + ++ PR A + + +N
Sbjct: 29 VDKLMDTIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRT-RSKIVPRKAIHG-WIHENG 86
Query: 61 NIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTK 120
+D+ +V+++K+P SYTGED++E+ HGGP+++ LL L+ G R+A PGEFTK
Sbjct: 87 EDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSG----ARMAEPGEFTK 142
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFS 180
RAFLN K+DL EA+ DLI A +E++ K ++ +L G ++ L +LI + I
Sbjct: 143 RAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVE 202
Query: 181 FDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
D+P+ E+ N + L +IK+KL + +++ L+ GL +V++G+PNVGKS+L
Sbjct: 203 LDYPD---EIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTL 259
Query: 241 FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI----PDINSKIKKNINEV 296
N L+ D AIVT I GTTRD I++ I I LF+I DTAG+ D+ V
Sbjct: 260 LNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL----------V 309
Query: 297 EKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
E++GIERT E++ +DI+++V DA + D+KI++ N + V NK+D
Sbjct: 310 ERLGIERTLQEIEKADIVLFVLDAS-SPLDEEDRKILERIK-NKRYLVVINKVDVVEKIN 367
Query: 357 NINYKNNIAN----IYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEA 412
KN + + +SA K G+ L ++ ++ S + R L
Sbjct: 368 EEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENV 427
Query: 413 NYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
+L AIK + + +++ + DL L + G+S DLLD IFS FC+GK
Sbjct: 428 KGHLEDAIKSLKEGM-----PVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK 482
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 525 bits (1354), Expect = 0.0
Identities = 149/484 (30%), Positives = 259/484 (53%), Gaps = 30/484 (6%)
Query: 1 MLTKNSPIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKK-----QLKPRFATYSSF 55
+ PI IATP G G + I+R+SG + + + V +K + A +
Sbjct: 11 LPVPGHPIAAIATPVGVGALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFG-R 69
Query: 56 FCKNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMP 115
++D+ + + F+AP S+T E ++E HGGP+++ +L L+ G RLA P
Sbjct: 70 LYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPVVVGRVLRLMLDNG----CRLAEP 125
Query: 116 GEFTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT 175
GEFT+RAFLN ++DL+Q EAI ++I+A TESA ++A+ + G S + L ++LI
Sbjct: 126 GEFTRRAFLNGRIDLLQAEAIGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCA 185
Query: 176 LIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNV 235
LIE DF EE+ E ++++ ++ ++ ++ ++I + ++ G++ V+ G+PN
Sbjct: 186 LIELELDFSEEDVE-FQSRDELTMQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNA 244
Query: 236 GKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINE 295
GKS+L N+L+G + AIV+ + GTTRD I + +K +F++TDTAG+ + E
Sbjct: 245 GKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG-------EE 297
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI--IKNFPMNIPVIYVWNKIDYSG 353
+E GI R+ +++ +D+I+Y+ D ++ D +I +K + V NK+D +
Sbjct: 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAA 357
Query: 354 H----QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTI-ESSPYLARERHIHS 408
+ + I I +SA GI+ L+ + DL++ + E+S + RH +
Sbjct: 358 NADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEA 417
Query: 409 LNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQF 468
L A+ L A+++I ELIA +LR + + I GK ++L+ IF +F
Sbjct: 418 LRNASDALQNALELIAHES-----ETELIAFELRAALDYVGQITGKVVNEEVLNTIFDKF 472
Query: 469 CIGK 472
CIGK
Sbjct: 473 CIGK 476
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 516 bits (1332), Expect = 0.0
Identities = 157/479 (32%), Positives = 243/479 (50%), Gaps = 28/479 (5%)
Query: 2 LTKNSPIIGIATP--PGRGGVGIIRLSGKNLWSIVEIVCK-KTKKQLKPRFATYSSFF-C 57
+ I IAT P +G VGI+R+SG +I + + K+ + Y
Sbjct: 4 MAITGTIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHP 63
Query: 58 KNNNIIDKGLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGE 117
+ I+D+ L++ KAP SYT EDV+E H HGG I + +L CLE G RLA PGE
Sbjct: 64 QTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESG----ARLAQPGE 119
Query: 118 FTKRAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLI 177
FT RAFLN +LDL Q E+I DL+ A + AA++A+ L GK + I L +++ I
Sbjct: 120 FTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEI 179
Query: 178 EFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGK 237
E DF E+ L+ +++ I ++ +++ K L+R GL V ++G+PNVGK
Sbjct: 180 EARIDFEEDLPP--LDDEAIISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGK 237
Query: 238 SSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVE 297
SSL N+ SD AIVT + GTTRD + + + ++ DTAGI + + ++VE
Sbjct: 238 SSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS-------DQVE 290
Query: 298 KIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKN 357
KIG+ER+ +D+++ DA T D++I + + P+I V NKID Q
Sbjct: 291 KIGVERSRQAANTADLVLLTIDAA-TGWTTGDQEIYEQVK-HRPLILVMNKIDLVEKQLI 348
Query: 358 INYKNNIAN---IYLSASKRIGINLLRNTLLDLIEK-TQTIESSPYLARERHIHSLNEAN 413
+ + ++ +A+++ GI+ L +L++++ +R +L +A
Sbjct: 349 TSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAK 408
Query: 414 YYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGKSTTNDLLDNIFSQFCIGK 472
L I Q L+ DLR + L I G+ T +LD IFS+FCIGK
Sbjct: 409 MSLEQVQATITQQL-----PLDFWTIDLRGAIQALGEITGEEVTESVLDRIFSRFCIGK 462
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 178 bits (453), Expect = 4e-54
Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
+G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I DTAG+
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK---KIIKNFPMN 339
+ + +EVE+IGIER W E++ +D ++++ D D + + I P
Sbjct: 63 REAS-------DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK 115
Query: 340 IPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
+P+ V NK D +G ++ N A I LSA G+++LRN L + +E
Sbjct: 116 LPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNME 171
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 117 bits (296), Expect = 3e-29
Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL-FKITDTAGIPDI 285
+V+ G+ NVGKSS N+LVG +V+IV+ AGTT D + K+++++ + DT G+ D
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD- 95
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIY 344
+ E+ ++ +E+ +D I V D+ T ++ ++ F M IP +
Sbjct: 96 -------VGELGRLRVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVV 145
Query: 345 VWNKIDYSGHQ-----KNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
V NKID G + + + +SA ++ G + + T+ +++
Sbjct: 146 VVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 97.2 bits (243), Expect = 5e-22
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ LIG+PNVGKSSL N+++G + IV+++AGTTRD + + N+ F I DTAG+
Sbjct: 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM-- 233
Query: 285 INSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKII 333
+ K + E EK + R + S+++ V D + + DK+I
Sbjct: 234 ---RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE-EGIIEQDKRIA 279
Score = 86.0 bits (214), Expect = 2e-18
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V ++G+PNVGKS++FN + G ++IV G TRD+I + + + F + DT GI +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYV 345
I + +I ++ +D+II++ + R + T D+++ K + PV+
Sbjct: 66 EPFLAQIRQQAEIAMD-------EADVIIFMVNGR-EGVTAADEEVAKILYRTKKPVVLA 117
Query: 346 WNKIDYSGHQKNINYKNNIANIY---------LSASKRIGINLLRNTLLDLI 388
NK+D N + NI + Y +S + +G+ LLD +
Sbjct: 118 VNKLD------NTEMRANIYDFYSLGFGEPYPISGTHGLGL----GDLLDAV 159
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 94.1 bits (234), Expect = 6e-22
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
++KL++ + K++ N + V+++G+ VGKSS NSL+G V V+
Sbjct: 17 ATQEKLIEFFGKLKQK--DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRP 74
Query: 263 ITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322
+ + + F I DT G+ + + + ++ + RT D+++YV
Sbjct: 75 VMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRT------IDVLLYVDRLDV 128
Query: 323 DKHTDFDKKIIKNFPMNI------PVIYVWNKID 350
+ DK+++ + V
Sbjct: 129 YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 93.7 bits (234), Expect = 7e-21
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
+ V ++G+PNVGKS+LFN+++ + A+V+ I GTTRD + + I+ + DTAG+
Sbjct: 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL- 238
Query: 284 DINSKIKKNINE--VEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKII 333
+ K + VEK R ++ +D+++ V DA T D+++
Sbjct: 239 ----RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDAT-QGITRQDQRMA 285
Score = 85.2 bits (212), Expect = 5e-18
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI-PDI 285
V+++G+PNVGKS+LFN LV AIV G TRD + T++ FK+ DT G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPM----NIP 341
I + + EV I +D++++V D + T D+ + +
Sbjct: 64 QDIISQKMKEVTLNMIR-------EADLVLFVVDGK-RGITKEDESLAD---FLRKSTVD 112
Query: 342 VIYVWNKID 350
I V NK +
Sbjct: 113 TILVANKAE 121
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 90.8 bits (225), Expect = 9e-21
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 201 LIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR 260
+ KLL+++ K+ N L ++++G+ VGKSS NS++G V ++
Sbjct: 18 APATQTKLLELLGNLKQE--DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP 75
Query: 261 DKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDA 320
+ + F I DT G+ + IN+ + I ++++ K D+++YV
Sbjct: 76 RPVMVSRSRAGFTLNIIDTPGLIE-----GGYIND-MALNIIKSFLLDKTIDVLLYVDRL 129
Query: 321 RYDKHTDFDKKIIKNFPMNIPVIYVWNKI 349
+ + DK + K + +WNK
Sbjct: 130 DAYRVDNLDKLVAKAI-TDSFGKGIWNKA 157
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 87.5 bits (218), Expect = 1e-20
Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
VV++G+PNVGKSSLFN L+ A+V + G TRD ++ ++ F + DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL-WSG 62
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYV 345
K +K I E +E +++++++ D R + T D ++ + PVI V
Sbjct: 63 DKWEKKIQEKVDRALE-------DAEVVLFAVDGR-AELTQADYEVAEYLRRKGKPVILV 114
Query: 346 WNKIDYSGHQKNINYKNNIANIY---------LSASKRIGINLLRNTLLDLI 388
K+D + ++ + +Y S+ G+ LL+ I
Sbjct: 115 ATKVD------DPKHELYLGPLYGLGFGDPIPTSSEHARGL----EELLEAI 156
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 83.7 bits (208), Expect = 4e-18
Identities = 38/174 (21%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKIT--KTIQINKFLFKITDTAGIPD 284
+ ++G+PNVGKS+L N L+G ++I + A TTR +I T + ++ DT P
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY--VDT---PG 65
Query: 285 INSKIKKNINEVEKIGIERT-WVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPV 342
++ + K+ IN + + + + + +++I+V + + T D+ ++ PV
Sbjct: 66 LHMEEKRAINRL----MNKAASSSIGDVELVIFVVEG--TRWTPDDEMVLNKLREGKAPV 119
Query: 343 IYVWNKIDYSGHQ-------KNINYKNNIANIY-LSASKRIGINLLRNTLLDLI 388
I NK+D + + + + N +I +SA + ++ + + +
Sbjct: 120 ILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 83.3 bits (207), Expect = 5e-18
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKI-----TKTIQINKFLFKITDTAG 281
V ++G+PNVGKS+L N+L+G VA ++ TTR ++ QI +F DT G
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQI---VF--VDTPG 64
Query: 282 IPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKNFPM 338
+ + + +++ + L + + +++V D R T D+ + +K
Sbjct: 65 LHKPMDALGEFMDQE-------VYEALADVNAVVWVVDLR-HPPTPEDELVARALKPLVG 116
Query: 339 NIPVIYVWNKIDYSGHQKNI--NYKNNIAN---IYLSASKRIGINLLRNTLLDL 387
+P++ V NK+D + + + Y + LSA + L+ LL L
Sbjct: 117 KVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 79.8 bits (198), Expect = 1e-16
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 32/180 (17%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKIT------KTIQINKFLFKITDTA 280
V ++G+PNVGKS+L N+L+G+ V+I++ AGTTR ++ QI +F DT
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQI---IF--LDTP 67
Query: 281 GI--PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-- 336
GI P + + ++ E+ L+ +D+I+++ DA + D++I +NF
Sbjct: 68 GIYEPKKSDVLGHSMVEI-------AKQSLEEADVILFMIDAT-EGWRPRDEEIYQNFIK 119
Query: 337 PMNIPVIYVWNKIDYSGHQKNI-----NYKNNIAN----IYLSASKRIGINLLRNTLLDL 387
P+N PVI V NKID G KN+ + +SA K ++ L T+L
Sbjct: 120 PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.7 bits (198), Expect = 3e-16
Identities = 80/517 (15%), Positives = 161/517 (31%), Gaps = 168/517 (32%)
Query: 30 LWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKA------------PHSY 77
L S ++ ++ + + +N + K V + P
Sbjct: 94 LMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 78 TGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNNKLDLIQVEAI- 136
+ + G G GK+ +A+ L+ K+ I
Sbjct: 153 -----VLIDGVLG-------------SGKTW---VAL------DVCLSYKVQCKMDFKIF 185
Query: 137 -IDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSF-DFPEENQELILNK 194
++L N ++ +L+ L L I+ ++ + + + L
Sbjct: 186 WLNLKNCNSPET------------------VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 195 NDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL-VGSDVAIVT 253
+ EL ++LLK + + L+ VL NV + +N+ + + +
Sbjct: 228 HSIQAEL----RRLLK--SKPYENCLL------VL---LNVQNAKAWNAFNLSCKILL-- 270
Query: 254 SIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDI 313
TTR K Q+ FL T ++ + E + +++ + D+
Sbjct: 271 ----TTRFK-----QVTDFL--SAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 314 -------------II--YVQD--ARYD--KHTDFDK--KIIKN----------------- 335
II ++D A +D KH + DK II++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 336 --FP--MNIP--VIYV-WNKIDYSG--------HQK---NINYKNN---IANIYLSASKR 374
FP +IP ++ + W + S H+ K + I +IYL +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 375 I-GINLLRNTLLDLIEKTQTIESSPYLARERHIHSLNEANY---YLSCAIKIINQSEKNF 430
+ L +++D +T +S + Y ++ +K I E+
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSD-------DLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 431 EKNLELIAEDLRFCHEKL-----SSIIGKSTTNDLLD 462
++ D RF +K+ + S N L
Sbjct: 492 L--FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Score = 76.0 bits (186), Expect = 1e-14
Identities = 56/412 (13%), Positives = 133/412 (32%), Gaps = 73/412 (17%)
Query: 75 HSYTGEDVIELHGHGGPIILHMLLS-----SCLEIGKSIGLRLAMPGEFTKRAFLNNKLD 129
H + + E I+ + C ++ + K ++D
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----------DMPKSILSKEEID 52
Query: 130 LI--------QVEAIIDLINASTESAAKSAMIS-LSGKFSKLINILLDKLINLRTLIEFS 180
I + + + E + + L + L++ + + +++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRM 111
Query: 181 FDFPEENQELILNKNDFFNEL-IKIKKKLLKIIQQGKKRAL--IRNGLNVVLIGQPNVGK 237
+ E ++ + N N F + + + LK+ ++AL +R NV++ G GK
Sbjct: 112 Y---IEQRDRLYNDNQVFAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGK 163
Query: 238 SSLFNSLVGSDVAIVTSIA--------GTTRDKITKTIQINKFLFKIT-DTAGIPDINSK 288
+ + V + + T + K L++I + D +S
Sbjct: 164 TWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 289 IKKNINEVEKIGIERTWVE--LKNSDIII-YVQDARYDKHTDFDKKIIKNFPMNIPVI-- 343
IK I+ + + + R +N +++ VQ+A+ + KI+ +
Sbjct: 223 IKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--------LTTR 273
Query: 344 --YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYL- 400
V + + + +I+ ++ + K + + L DL + T +P
Sbjct: 274 FKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRL 330
Query: 401 ---ARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLS 449
A L + + + ++ LE + R ++LS
Sbjct: 331 SIIAESIRDG-LATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLS 379
Score = 52.5 bits (125), Expect = 2e-07
Identities = 74/482 (15%), Positives = 134/482 (27%), Gaps = 142/482 (29%)
Query: 16 GRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATY---SSFFCKNNNIIDKGLVIYFK 72
G G SGK + VC K Q K F + +++ + ++
Sbjct: 157 GVLG------SGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 73 APHSYT----GEDVIELHGHGGPIILHMLLSS-----CL---------EIGKSIGLR--- 111
++T I+L H L LL S CL + + L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 112 LAMPGEFTKR-----AFLNNKLDLIQVEAIIDLINASTESAAKSAMIS-LSGKFSKL--- 162
L T R FL+ ++ T KS ++ L + L
Sbjct: 269 L-----LTTRFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 163 ---INILLDKLI--------------------NLRTLIEFSFDF--PEENQELILNKNDF 197
N +I L T+IE S + P E +++ +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRL 378
Query: 198 --FNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI 255
F I LL +I ++ + +N + K SL
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-------KYSLVE------------- 418
Query: 256 AGTTRDKITKTIQINKFLFKITDTA-GIPDINSKIKKNINEVEKIGIERTWVELKNSDII 314
+ TI I ++ ++ I V+ I +T+ + D+I
Sbjct: 419 ----KQPKESTISIPSIYLELKVKLENEYALHRSI------VDHYNIPKTF---DSDDLI 465
Query: 315 IYVQDA--------------RYDKHTDF----------DKKIIKNFPMNIPVIYVWNKID 350
D ++ T F ++KI + + N +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 351 ----YSGH-QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKT-QTIESSPYLARER 404
Y + N + N L +I NL+ + DL+ + + + +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 405 HI 406
+
Sbjct: 586 QV 587
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 72.7 bits (179), Expect = 3e-15
Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 59/205 (28%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL---FKITDTAGI- 282
++ G+ NVGKS+L L G G TR I + KI D G
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRK-------IIEIEWKNHKIIDMPGFG 55
Query: 283 ------PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF 336
++ +IK I + + N D+ + V D + +
Sbjct: 56 FMMGLPKEVQERIKDEIVHFIEDNAK-------NIDVAVLVVDGKAAPEIIKRWEKRGEI 108
Query: 337 PM-----------NIPVIYVWNKIDYSGHQKNINYKNNIANIY----------------- 368
P+ +IP I NK+D I + N
Sbjct: 109 PIDVEFYQFLRELDIPTIVAVNKLD------KIKNVQEVINFLAEKFEVPLSEIDKVFIP 162
Query: 369 LSASKRIGINLLRNTLLDLIEKTQT 393
+SA I L+N + ++I + Q
Sbjct: 163 ISAKFGDNIERLKNRIFEVIRERQG 187
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 71.5 bits (176), Expect = 8e-14
Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 49/227 (21%)
Query: 203 KIKKKLLKII----QQGKKRALIRNGLNVV-LIGQPNVGKSSLFNSLVGSDV-------A 250
K+ K+L I + + RN + + ++G N GK+SLFNSL G
Sbjct: 155 KLMKELESIKIFKEKSIESNK--RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFT 212
Query: 251 IVTSIAGTTRDKITKTIQINKFLFKITDTAG-IPDINSKIKKNINEVEKIGIERTWVELK 309
T I IN + DT G I I I + + + E K
Sbjct: 213 --------TMSPKRYAIPINNRKIMLVDTVGFI----RGIPPQIVDAFFVTLS----EAK 256
Query: 310 NSDIIIYVQDA-----RYDKHTDFDKKIIKNFPM-NIPVIYVWNKID-----------YS 352
SD +I V D+ + +I++ + P++ NKID
Sbjct: 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV 316
Query: 353 GHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPY 399
Y I +SA KR + LLR+ + L + ++E +
Sbjct: 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ-LSLEHHHH 362
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 69.7 bits (170), Expect = 4e-13
Identities = 31/150 (20%), Positives = 47/150 (31%), Gaps = 20/150 (13%)
Query: 206 KKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDV----AIVTSIAGTTRD 261
+ I K + + LNV + G+ GKSS N+L G A T + T +
Sbjct: 52 QLTNSAISDALKE-IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME 110
Query: 262 KITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR 321
N D GI N + + ++ D I + R
Sbjct: 111 -RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK----------MKFYEYDFFIIISATR 159
Query: 322 YDKHTDFDKKIIKNFP-MNIPVIYVWNKID 350
+ D I K M +V K+D
Sbjct: 160 F---KKNDIDIAKAISMMKKEFYFVRTKVD 186
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 58.9 bits (142), Expect = 6e-10
Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 13/152 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT-TRDKITKTIQINKFLFKITDTAGIP 283
L ++L+G+ GKS+ NS++ + T T+ I DT +
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMF 82
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMN 339
+ EV++ L + + + ++T D++ + F +
Sbjct: 83 SWKDHCEALYKEVQR------CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED 136
Query: 340 I--PVIYVWNKIDYSGHQKNINYKNNIANIYL 369
I ++ + ++Y ++ N L
Sbjct: 137 AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKAL 168
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 58.1 bits (141), Expect = 1e-09
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 199 NELIKIKKKLLK-IIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAG 257
N+++ K++L+ + + + + + ++IG PNVGKS+L N L ++A G
Sbjct: 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG 153
Query: 258 TTRDKITKTIQINKFLFKITDTAGI--PDINS 287
T + + +++ K L + DT GI P
Sbjct: 154 ITTSQ--QWVKVGKELE-LLDTPGILWPKFED 182
Score = 33.0 bits (76), Expect = 0.17
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 24/110 (21%)
Query: 288 KIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR---YDKHTDFDKKIIKNFPMNIPVIY 344
K ++ + E LK DI+ + DAR ++ + I+K N P I
Sbjct: 12 KARREVTEK-----------LKLIDIVYELVDARIPMSSRNPMIE-DILK----NKPRIM 55
Query: 345 VWNKID---YSGHQKNINY--KNNIANIYLSASKRIGINLLRNTLLDLIE 389
+ NK D + Q+ + I ++ +++ G+N + ++++
Sbjct: 56 LLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 57.3 bits (138), Expect = 2e-09
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 13/146 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIV-TSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
L +VL+G+ GKS+ NS++G V T+ T+ ++ + + DT GI
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMN 339
D + E+ + + L + + ++T+ + K + F
Sbjct: 90 DTEVPNAETSKEIIR------CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER 143
Query: 340 I--PVIYVWNKIDYSGHQKNINYKNN 363
+I ++ + D G +Y
Sbjct: 144 ARSFMILIFTRKDDLGDTNLHDYLRE 169
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 56.9 bits (138), Expect = 2e-09
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 25/111 (22%)
Query: 190 LILNKND-------------FFNELIKI-----KKKLLKIIQQGKKRALIRNGLNVVLIG 231
++LNK D F + ++ + ++++ L R V+++G
Sbjct: 51 ILLNKVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLAR----VLIVG 106
Query: 232 QPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
PN GKS++ N L G + V + G T+ + + + I DT GI
Sbjct: 107 VPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLENGVK-ILDTPGI 154
Score = 28.8 bits (65), Expect = 3.8
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 302 ERTWVE-LKNSDIIIYVQDAR-----YDKHTDFDKKIIKNFPMNIPVIYVWNKID 350
+R + L+ + ++ V+DAR DF +K I + NK+D
Sbjct: 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRK---------ETIILLNKVD 57
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 56.9 bits (138), Expect = 3e-09
Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 35/249 (14%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
+ +LIG PN GK++LFN+L ++ V + G T +K T + + L +ITD G+ +
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-------FPM 338
+ + + E+I V D II V DA + ++ F +
Sbjct: 62 VANAEGISQD-EQIA--AQSVIDLEYDCIINVIDA-----CHLE----RHLYLTSQLFEL 109
Query: 339 NIPVIYVWNKIDY-SGHQKNINYKN-----NIANIYLSASKRIGINLLRNTLLDLIEKTQ 392
PV+ N +D +I+ + + I + A K IGI L+ +LL +K +
Sbjct: 110 GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQKIK 169
Query: 393 TIESSPYLARERHIHSL-------NEANYYLS-CAIKIINQSEKNFEK-NLELIAEDLRF 443
++ S +A ++ ++ L N + + ++ EK E + L+
Sbjct: 170 PLKLSLSVAAQQILNDLENQLISKGYKNSFAYYFSRRLAEGDTLIGEKAFTESLLIKLQE 229
Query: 444 CHEKLSSII 452
+ L ++
Sbjct: 230 TEQNLDVLL 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 54.5 bits (132), Expect = 6e-09
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ LIG PNVGKS++FN+L G +V + + G T +K + N FK+ D G+
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-------FP 337
+ + +I+E+ I R ++ + D+++ + DA + +N
Sbjct: 67 LTA---NSIDEI----IARDYIINEKPDLVVNIVDA---------TALERNLYLTLQLME 110
Query: 338 MNIPVIYVWNKIDYSGHQK-NINYKN-----NIANIYLSASKRIGINLLRNTLLDLIEKT 391
M ++ NK+D + I+ + + LSA+K++GI L+ + ++
Sbjct: 111 MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170
Query: 392 QTIESSPYLARERHIHSL 409
+T E Y E +I +
Sbjct: 171 KTAEIK-YPNFEPYIKKI 187
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 55.4 bits (134), Expect = 1e-08
Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 39/254 (15%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L + LIG PN GK++LFN L GS V + AG T ++ + D G
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-------FP 337
+ + + + E+I ++ ++D++I V DA + +N
Sbjct: 63 LTTISSQTSLD-EQIA--CHYILSGDADLLINVVDA---------SNLERNLYLTLQLLE 110
Query: 338 MNIPVIYVWNKIDY-SGHQKNINYKN-----NIANIYLSASKRIGINLLRNTLLDLIEKT 391
+ IP I N +D I I L +++ GI L+ +
Sbjct: 111 LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE 170
Query: 392 QTIESSPYLARERHIHSL-----NEANYYLS--CAIKI------INQSEKNFEKNLELIA 438
SL ++ +++ ++L+
Sbjct: 171 NVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAYAGEASQHLDAAL 230
Query: 439 EDLRFCHEKLSSII 452
LR + + I
Sbjct: 231 ARLRNEMDDPALHI 244
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 54.6 bits (132), Expect = 1e-08
Identities = 46/246 (18%), Positives = 92/246 (37%), Gaps = 44/246 (17%)
Query: 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAG 281
+ + V L G PNVGK+SLFN+L G+ V + G T +K + + D G
Sbjct: 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
Query: 282 IPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP---- 337
+ + EKI R ++ ++D++I V D+ ++
Sbjct: 62 TYSLGY-----SSIDEKIA--RDYLLKGDADLVILVADSV---------NPEQSLYLLLE 105
Query: 338 ---MNIPVIYVWNKIDYS-GHQKNINYKN-----NIANIYLSASKRIGINLLRNTLLDLI 388
M VI ID + I+ I ++ S+ G+ L+ +++
Sbjct: 106 ILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA 165
Query: 389 EKTQT-----IESSPYLARERHIHS----LNEANYYLS---CAIKIINQSEKNFEKNLEL 436
+K ++ + E I L + ++ A+K ++ + + + ++L
Sbjct: 166 QKNTILHRMILDYGEKV--ESEIKKVENFLRDKKLRINPRYFALKYLSGDPEFYSEGVKL 223
Query: 437 IAEDLR 442
+L
Sbjct: 224 GLPELS 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 88/557 (15%), Positives = 163/557 (29%), Gaps = 213/557 (38%)
Query: 29 NLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKGLVIYFKAPHSYTGED----VIE 84
+ I QL+ +F I + + +D E
Sbjct: 25 ASFFIAS--------QLQEQFNK-----------------ILPEPTEGFAADDEPTTPAE 59
Query: 85 LHGHGGPIILHMLLSSCLEIGKSIG-----LRLAMPGEFTKRAFLNNKLDLIQVEAIIDL 139
L G L + SS +E +G L L + EF +L D+ + A +
Sbjct: 60 LVGK----FLGYV-SSLVE-PSKVGQFDQVLNLCL-TEFE-NCYLEGN-DIHALAAKLLQ 110
Query: 140 INASTESAAKS-------AMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEENQELIL 192
N +T K A I F K N L R + E N +L+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FRAV-------GEGNAQLVA 158
Query: 193 ------NKNDFFNELIKI---------------KKKLLKIIQQGKK-RALIRNGLNVV-- 228
N +D+F EL + + L ++I+ + GLN++
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 229 ---------------------LIG--Q--------PNVGKS--SLFNSLVGS-----DV- 249
LIG Q +G + L + L G+ +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 250 -AIVTSIAGTTRDKITKTIQINKFLFKI----TDTAGIPDINSKI-KKNINEVEKI---- 299
A+ + + + LF I + + I + ++ E +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 300 ----GIERTWVELKNSDIIIYVQDARYDKHTDFDKKI---IKNFPMNIPVIYVWNKIDYS 352
+ + V+ D + + + H K++ + N N+ V+ S
Sbjct: 339 LSISNLTQEQVQ----DYV-----NKTNSHLPAGKQVEISLVNGAKNL-VV--------S 380
Query: 353 GHQK-----NINYKN-------NIANIYLSASK-RIGINLLRNTLLDLIEKTQTIESSPY 399
G + N+ + + + I S K + L + +SP+
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP------V-------ASPF 427
Query: 400 LARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLR---FCHE------KLSS 450
HS + L A +IN+ + N+ A+D++ + LS
Sbjct: 428 -------HS-----HLLVPASDLINKDLV--KNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 451 IIGKSTTNDLLDNIFSQ 467
I + ++D I
Sbjct: 474 SI----SERIVDCIIRL 486
Score = 51.6 bits (123), Expect = 5e-07
Identities = 52/331 (15%), Positives = 91/331 (27%), Gaps = 157/331 (47%)
Query: 36 IVCKK---TKKQLKPRFA-------------------TYSSFFCKNNNIIDKGLVIYF-- 71
+ K T +L+ ++ SFF + K + + F
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF----VSVRKAITVLFFI 306
Query: 72 ------KAPHSY----TGEDVIELHGHGGPIILHMLLSSCLEIGKSI-GLRLAMPGEFTK 120
P++ ED +E + G P ML SI L
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLE-NNEGVPS--PML---------SISNLTQE------- 347
Query: 121 RAFLNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLIN-----IL------LDK 169
QV+ ++ N+ + + + +S L+N ++ L
Sbjct: 348 -----------QVQDYVNKTNSHLPAGKQ---VEIS-----LVNGAKNLVVSGPPQSLYG 388
Query: 170 L-INLRTL----------IEFS-----FD--F-----P------EENQELILNKNDFFNE 200
L + LR I FS F F P +LI D
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN--KDLVKN 446
Query: 201 LIKIKKKLLKI----------IQQGKK-------RALIRNGLN-----------VVLIGQ 232
+ K ++I ++ +IR + ++ G
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG- 505
Query: 233 PNVGKSSLFNSLV-----GSDVAIVTSIAGT 258
P G +S L G+ V ++ +AGT
Sbjct: 506 P--GGASGLGVLTHRNKDGTGVRVI--VAGT 532
Score = 48.9 bits (116), Expect = 3e-06
Identities = 39/225 (17%), Positives = 69/225 (30%), Gaps = 77/225 (34%)
Query: 307 EL-KNSDIIIYVQDA--RYDKHTDFDK-----KIIKNFPMNIPVIYVWNKIDYSGHQKNI 358
+L K S QD R D H I+ N P+N+ + + G +
Sbjct: 1634 DLYKTSKA---AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRE 1686
Query: 359 NYKNNIANIYLSAS-------KRIGINLLRNT------LLDLIEKTQ----TIESSPY-L 400
NY I + K I + T LL + TQ +E + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 401 ARERHI---------HSLNEANYY--LSC---------AIKIINQ----------SEKNF 430
+ + + HSL E Y L+ ++++ ++
Sbjct: 1747 LKSKGLIPADATFAGHSLGE---YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 431 EKNLELIAED-----LRFCHEKLSSIIGK--STTNDLL----DNI 464
N +IA + F E L ++ + T L+ N+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Score = 34.3 bits (78), Expect = 0.096
Identities = 31/272 (11%), Positives = 65/272 (23%), Gaps = 133/272 (48%)
Query: 31 WSIVEIVCKKTKKQLKPRF---------ATYSSFFCKNN-----------NIIDKGLVIY 70
+SI++IV L F YS+ + I++ Y
Sbjct: 1659 FSILDIV-INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 71 -FKAP---------------------------------------HS---YT------G-- 79
F++ HS Y
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 80 --EDVIELHGHGGPIILH---MLLSSCLEIGKSIGLRLAM----PGEFTKRAFLNNKLDL 130
E ++E+ + M + + + M PG
Sbjct: 1778 SIESLVEV--------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA------SFSQ 1823
Query: 131 IQVEAIIDLINAST----ESA---AKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDF 183
++ +++ + T E ++ +G LD + N
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-----LDTVTN----------- 1867
Query: 184 PEENQELILNKNDFFNELIKIKK-KLLKIIQQ 214
+LN IK++K ++++ +
Sbjct: 1868 -------VLNF-------IKLQKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 1.5
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 37/127 (29%)
Query: 4 KNSP--IIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQL-------KPRFAT--- 51
N ++ ++ PP L G NL + + Q K +F+
Sbjct: 371 VNGAKNLV-VSGPP-------QSLYGLNLT-LRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 52 -----Y-SSFFCKNNNIIDKGLV---IYFKA-----P--HSYTGEDVIELHGHGGPIILH 95
+ S +++I+K LV + F A P ++ G D+ L G I+
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 96 MLLSSCL 102
++ +
Sbjct: 482 CIIRLPV 488
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 54.3 bits (130), Expect = 2e-08
Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 12/152 (7%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIA-GTTRDKITKTIQINKFLFKITDTAGIP 283
++L+G+ GKS+ NS++G A TR T + + +K ++ DT I
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIF 81
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN----FPMN 339
E + ++ V + + T D++ ++ F +
Sbjct: 82 SSQVSKTDPGCEERGHCYLLSA---PGPHALLLVT--QLGRFTAQDQQAVRQVRDMFGED 136
Query: 340 I--PVIYVWNKIDYSGHQKNINYKNNIANIYL 369
+ ++ V+ + + +Y +N N L
Sbjct: 137 VLKWMVIVFTRKEDLAGGSLHDYVSNTENRAL 168
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 53.8 bits (129), Expect = 4e-08
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 206 KKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS------DVAIVTSIAGTT 259
+L I+ R G +V ++G NVGKS+ N ++ +V + GTT
Sbjct: 148 AELADAIEYY------RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT 201
Query: 260 RDKITKTIQINKFLFKITDTAGI 282
D I + + DT GI
Sbjct: 202 LDLIDIPLDEE---SSLYDTPGI 221
Score = 28.8 bits (64), Expect = 4.0
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 21/93 (22%)
Query: 308 LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID----------------Y 351
K+ +++ + D D + + + F N V+ V NK D Y
Sbjct: 67 GKSDALVVKIVDIF-DFNGSWLPGL-HRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRY 124
Query: 352 SGHQKNINYKNNIANIYLSASKRIGINLLRNTL 384
S Q + +SA+K GI L + +
Sbjct: 125 SAKQLGL---KPEDVFLISAAKGQGIAELADAI 154
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 53.3 bits (128), Expect = 6e-08
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 198 FNELIKIKKKLLKIIQQGKK-----RALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIV 252
+++ L+ + + ++ + VV+ G PNVGKS+L +L + I
Sbjct: 136 VASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIA 195
Query: 253 TSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSD 312
+ TTR + F ++I DT G+ D NE+EK I L +
Sbjct: 196 SY-PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI---SERNEIEKQAILAL-RYLG--N 248
Query: 313 IIIYVQDARYDKHTDFDK-----KIIKNFPMNIPVIYVWNKIDYSGHQ-----KNINYKN 362
+IIY+ D ++ + + ++P + V NKID + + + +
Sbjct: 249 LIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEK 308
Query: 363 NIANIYLSASKRIGINLLRNTLLDLIEK 390
+ I +SA K GI+L++ ++ +
Sbjct: 309 GLNPIKISALKGTGIDLVKEEIIKTLRP 336
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 50.6 bits (122), Expect = 1e-07
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ LIG PNVGKS++FN+L G +V + + G T +K + N FK+ D G+
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-------FP 337
+ + +I+E+ I R ++ + D+++ + DA + +N
Sbjct: 63 LTA---NSIDEI----IARDYIINEKPDLVVNIVDAT---------ALERNLYLTLQLME 106
Query: 338 MNIPVIYVWNKIDYSGHQK-NINYKN-----NIANIYLSASKRIGINLLRNTLLDLIE 389
M ++ NK+D + I+ + + LSA+K++GI L+ + ++
Sbjct: 107 MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 164
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 51.7 bits (124), Expect = 1e-07
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 28/183 (15%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
++L G PNVGKSS N + ++V + + + TT++ ++I DT G+ D
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSY-SFTTKNLYVGHFDHKLNKYQIIDTPGLLD-- 88
Query: 287 SKIKKNINEVEKIGIERTWVELKN-SDIIIYVQDA----RYDKHTDFD--KKIIKNFPMN 339
+ +N N +E I L + + +I+++ D + I F N
Sbjct: 89 -RAFENRNTIEMTTITA----LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SN 142
Query: 340 IPVIYVWNKID-------YSGHQKNIN-----YKNNIANIYLSASKRIGINLLRNTLLDL 387
++ +NKID ++ I KN I S +G+ + T +L
Sbjct: 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202
Query: 388 IEK 390
++
Sbjct: 203 LKN 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 51.5 bits (123), Expect = 2e-07
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 206 KKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG-----SDVAIVTSIAGTTR 260
K+++ I + ++ +V ++G NVGKS+ N ++ +V + GTT
Sbjct: 150 AKVMEAINRYREGG------DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL 203
Query: 261 DKITKTIQINKFLFKITDTAGI 282
D I ++ L+ DT GI
Sbjct: 204 DMIEIPLESGATLY---DTPGI 222
Score = 28.4 bits (63), Expect = 6.3
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 25/105 (23%)
Query: 308 LKNSDIIIYVQDARYDKHTDFD--KKIIKNFPMNIPVIYVWNKID--------------- 350
++ +++ + D + + + P ++ V NK D
Sbjct: 69 GESKALVVNIVDIFDFNGSFIPGLPRFAADNP----ILLVGNKADLLPRSVKYPKLLRWM 124
Query: 351 -YSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTI 394
+ + + +SA+K IG+ + + E
Sbjct: 125 RRMAEELGL---CPVDVCLVSAAKGIGMAKVMEAINRYREGGDVY 166
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 48.5 bits (116), Expect = 2e-06
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 33/203 (16%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ LIG PN GK+SLFN + G + V + G T ++ + ++ NK +I D GI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKKNK-DLEIQDLPGIYS 61
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-------FP 337
++ + K+ R ++ + +D I+ V DA + +N
Sbjct: 62 MSP-----YSPEAKVA--RDYLLSQRADSILNVVDA---------TNLERNLYLTTQLIE 105
Query: 338 MNIPVIYVWNKIDY-SGHQKNINYKN-----NIANIYLSASKRIGINLLRNTLLDLIEKT 391
IPV N ID G K IN + + SA K+ G++ + T
Sbjct: 106 TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTST 165
Query: 392 QTIESSPYLAR--ERHIHSLNEA 412
+ P E I + E
Sbjct: 166 VGDLAFPIYDDRLEAAISQILEV 188
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 47.3 bits (113), Expect = 4e-06
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
V L+G PNVGK+++FN+L G V + G T +K ++ + F + D GI
Sbjct: 4 KTVALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 43.4 bits (102), Expect = 1e-04
Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 32/258 (12%)
Query: 207 KLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKT 266
+ ++ + + + + V LIG GK+SL L+G T K ++T
Sbjct: 24 QSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIG----------ETFDPKESQT 73
Query: 267 IQINKFLFKIT--DTAGIPDINSKIKKNINEVEKIGIER----TWVELKNSDIIIYVQDA 320
+N + D + + + G E + S + + + D+
Sbjct: 74 HGLNVVTKQAPNIKGLENDDELKECLFHFWDFG--GQEIMHASHQFFMTRSSVYMLLLDS 131
Query: 321 RYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYK------NNIANIYL--SAS 372
R D + + + I+ + PVI V NKID NI K I N + S
Sbjct: 132 RTDSNKHYWLRHIEKYGGKSPVIVVMNKID-ENPSYNIEQKKINERFPAIENRFHRISCK 190
Query: 373 KRIGINLLRNTLLDLIEKTQTIESSP----YLARERHIHSLNEANYYLSCAIKIINQSEK 428
G+ + +L + +I +P ++ + + A YL+ ++
Sbjct: 191 NGDGVESIAKSLKSAVLHPDSIYGTPLAPSWIKVKEKLVEATTAQRYLN-RTEVEKICND 249
Query: 429 NFEKNLELIAEDLRFCHE 446
+ + L + +
Sbjct: 250 SGITDPGERKTLLGYLNN 267
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 42.5 bits (99), Expect = 2e-04
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 217 KRALIRNG--LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN---- 270
R ++ G ++++G+ +GKS+L NSL +D+ + +KI +T+QI
Sbjct: 9 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDL-YPERVISGAAEKIERTVQIEASTV 67
Query: 271 -------KFLFKITDTAGIPDINSK------IKKNINE------VEKIGIERTWVELKNS 311
K + DT G D + I I+E ++ G+ R +
Sbjct: 68 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRV 127
Query: 312 DIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350
Y D +K + ++ V K D
Sbjct: 128 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 41.0 bits (97), Expect = 2e-04
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 39/186 (20%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD-- 284
V +G+ NVGKSSL N+L +A V+ G KT IN + + D
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPG-------KTRSIN--FYLVNSKYYFVDLP 76
Query: 285 ------INSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKH--TDFDKKIIKN 335
++ K + VE R L+ +++ D R D D +++
Sbjct: 77 GYGYAKVSKKERMLWKRLVEDYFKNRW--SLQMVFLLV---DGR---IPPQDSDLMMVEW 128
Query: 336 F-PMNIPVIYVWNKID---YSGHQKNIN-YKNNIAN------IYLSASKRIGINLLRNTL 384
+NIP V K+D S K + ++ + I S+ GI+ L + +
Sbjct: 129 MKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188
Query: 385 LDLIEK 390
L+++
Sbjct: 189 STLLKE 194
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 41.7 bits (97), Expect = 3e-04
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 27/204 (13%)
Query: 221 IRNG--LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN-------- 270
+ +G ++++G+ +GKS+L NSL +D + + +I KT+Q+
Sbjct: 3 LGSGFEFTLMVVGESGLGKSTLINSLFLTD--LYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 271 ---KFLFKITDTAGIPD-INSK-----IKKNINE------VEKIGIERTWVELKNSDIII 315
+ L I DT G D +++ + I+ + + R + +
Sbjct: 61 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCL 120
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRI 375
Y D + +K + +I + K D ++ +K I +I
Sbjct: 121 YFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKI 180
Query: 376 GINLLRNTLLDLIEKTQTIESSPY 399
+ + + + P
Sbjct: 181 YEFPETDDEEENKLVKKIKDRLPL 204
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 40.3 bits (95), Expect = 5e-04
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 41/196 (20%)
Query: 227 VVLIGQPNVGKSSLFNSLVG-SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD- 284
V G+ N GKSS N+L +A + G +T IN LF++ D + D
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPG-------RTQLIN--LFEVADGKRLVDL 79
Query: 285 -------INSKIKKNINEVEKIGIE---RTWVELKNSDIIIYVQDARYDKHTDFDKKIIK 334
+ ++K+ + L+ +++ D R+ D D+++I+
Sbjct: 80 PGYGYAEVPEEMKRKWQRA----LGEYLEKRQSLQGLVVLM---DIRH-PLKDLDQQMIE 131
Query: 335 NF-PMNIPVIYVWNKID---YSGHQKNIN-YKNNIAN-------IYLSASKRIGINLLRN 382
NI V+ + K D + +N + + S+ K+ G++ LR
Sbjct: 132 WAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 191
Query: 383 TLLDLIEKTQTIESSP 398
L + Q +E +
Sbjct: 192 KLDTWFSEMQPVEETQ 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 210 KIIQQGKKRALIR--NGLNVVLIGQPNVGKSSLFNSLVGSDVA 250
K Q+ K R N L ++G PNVGKS+ F ++ S +
Sbjct: 4 KKQQEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLG 46
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 39.4 bits (93), Expect = 0.002
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 210 KIIQQGKKRALI---RNGLNVVLIGQPNVGKSSLFNSL 244
K K +I L + ++G PNVGKS+ FN L
Sbjct: 5 KGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVL 42
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL-FKITDTAGIPDI 285
++L+G GKSS+ + T +T I + F+ F+I D G
Sbjct: 23 ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPG---- 78
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK-----KIIKNFPMNI 340
+ E I + + +IYV DA+ D + ++
Sbjct: 79 QMDFFDPTFDYEMI--------FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 341 PVIYVWNKID 350
+K+D
Sbjct: 131 NFEVFIHKVD 140
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 38.3 bits (88), Expect = 0.004
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 213 QQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKF 272
Q +K ++++G+ +GKS+L NSL +D+ + +KI +T+QI
Sbjct: 26 QVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDL-YPERVIPGAAEKIERTVQIEAS 84
Query: 273 LFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI 332
T I + K++ + + G + II Y+ D +++++ + +
Sbjct: 85 ------TVEIEERGVKLRLTVVDTPGYG-DAINCRDCFKTIISYI-DEQFERYLHDESGL 136
Query: 333 IKNFPMNIPVIYVWNKIDYSGHQ 355
+ ++ V + I GH
Sbjct: 137 NRRHIIDNRVHCCFYFISPFGHG 159
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 38.0 bits (89), Expect = 0.006
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 229 LIGQPNVGKSSLFNSLVGSDVAI 251
++G+PNVGKS+ F++ DV I
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEI 27
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 36.8 bits (86), Expect = 0.008
Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 227 VVLIGQPNVGKSSLFNSLVG-SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD- 284
+ L G+ NVGKSS NSL+ ++A +S G KT +N + I D D
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPG-------KTQTLN--FYIINDELHFVDV 76
Query: 285 -------INSKIKKNINE-VEKIGIERTWVELKNSDIIIYVQDARYDKH--TDFDKKIIK 334
++ ++ +E R ELK I+ D R H ++ D ++ +
Sbjct: 77 PGYGFAKVSKSEREAWGRMIETYITTRE--ELKAVVQIV---DLR---HAPSNDDVQMYE 128
Query: 335 NF-PMNIPVIYVWNKID---YSGHQKNIN-YKNNIAN------IYLSASKRIGINLLRNT 383
IPVI + K D K+ + + I S+ + G +
Sbjct: 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188
Query: 384 LLDLIEK 390
+ +I +
Sbjct: 189 IKKMINR 195
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 37.3 bits (86), Expect = 0.008
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFL-FKITDTAGIPDI 285
++L+G+ GKSS+ + + + A T G T D ++ + + D G
Sbjct: 6 LLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF 65
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYV---QDARYDKHTDFDKKIIKNFPMNIPV 342
+ + ++I+V + K + K +K P
Sbjct: 66 MENYFTKQKD----------HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD 115
Query: 343 IYVW---NKID 350
++ +K+D
Sbjct: 116 AKIFVLLHKMD 126
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein,
N-glycosylation, structural genomics; HET: FLC; 1.60A
{Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A*
3fj7_A*
Length = 237
Score = 37.0 bits (86), Expect = 0.008
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 18/158 (11%)
Query: 204 IKKKLLKIIQQGKKRALIRNGLNVVLIGQP-NVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
I K K + L +++ Q N K L V IV G +
Sbjct: 62 IASDFGKDFNVSKIKPLYFREA--IILTQKGNPLKIKGLKDLANKKVRIVV-PEGAGKSN 118
Query: 263 ITKTIQINKFLFKITDTAGIPDINSKIK---KNINEVEKIGIERTWVELKNSDI-IIYVQ 318
+ T + + D I + + I N R +D I ++
Sbjct: 119 TSGTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSGSA------RKLFAQDQADAWITWID 172
Query: 319 DARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQK 356
++ + D ++ V +N I G K
Sbjct: 173 WSKSNP----DIGTAVAIEKDLVVYRTFNVIAKEGASK 206
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 36.3 bits (85), Expect = 0.008
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 227 VVLIGQPNVGKSSL---FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
V+L+G+ VGKS+L F L G + + D + I ++K + D
Sbjct: 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE----DTYERRIMVDKEEVTLIVYDIWE 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 35.9 bits (84), Expect = 0.009
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
V+L+G P VGKS+L G + A ++I ++ + + D
Sbjct: 5 VLLLGAPGVGKSALARIFGGVE---DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWE 58
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 36.9 bits (84), Expect = 0.013
Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 52/215 (24%)
Query: 186 ENQELILNKNDFFNELIKIKKKLLKIIQ--QGKKRALIRNGLNVVLIGQPNVGKSSLFNS 243
+NK + + K L + I+ + L + ++++G GKS+ N+
Sbjct: 29 NKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNA 88
Query: 244 LVGSDV---------AIVTSIAGTTRDKI---------TKTIQINKFLFKIT-DTAGIPD 284
L+G ++ A++T + K+ + + F +K T D A
Sbjct: 89 LIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148
Query: 285 INSKIKKNINEVEKIGI--------------------------ERTWVELKNSDIIIYVQ 318
+ + K+ +V+ + E + + N I++V
Sbjct: 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVM 208
Query: 319 DARYDKH-TDFDKKIIKNFPMN--IPVIYVWNKID 350
A + T +++ ++N+ + V ++ N D
Sbjct: 209 RA--SQPCTLGERRYLENYIKGRGLTVFFLVNAWD 241
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 35.8 bits (83), Expect = 0.018
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----FLFKITDTAG 281
VVLIG+ VGKS+L N G ++ + D +T+ ++ L + + G
Sbjct: 40 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 99
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 35.4 bits (82), Expect = 0.024
Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 54/204 (26%)
Query: 227 VVLIGQPNVGKSSLFNSLVG-SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD- 284
+ G+ N GKS+ N L +A + G +T IN F + A
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPG-------RTQHIN--YFSVGPAAEPVAH 82
Query: 285 -----------INSKIKKNINEVEKIGIE---RTWVELKNSDIIIYVQDARYDKH--TDF 328
+ K + ++ + +T +L +++ DAR T+
Sbjct: 83 LVDLPGYGYAEVPGAAKAHWEQL----LSSYLQTRPQLCGMILMM---DAR---RPLTEL 132
Query: 329 DKKIIKNF-PMNIPVIYVWNKID---YSGHQKNIN-------------YKNNIANIYLSA 371
D+++I+ F P P+ + K D + Y + SA
Sbjct: 133 DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA 192
Query: 372 SKRIGINLLRNTLLDLIEKTQTIE 395
KR G++ + + E
Sbjct: 193 LKRTGLDDAHALIESWLRPAAADE 216
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 35.9 bits (84), Expect = 0.025
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 224 GLNVVLIGQPNVGKSSLFNSL 244
G ++G PNVGKS+LFN+L
Sbjct: 2 GFKCGIVGLPNVGKSTLFNAL 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 34.8 bits (81), Expect = 0.029
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
L V ++G + GKS+L + + V + + K I ++ +L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYL--TGTYVQEES-PEGGRFKKEIVVDGQSYLLLIRDEGG 76
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 35.3 bits (82), Expect = 0.036
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 218 RALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVT 253
+ + + GQ VGKSSL N+L+G I+T
Sbjct: 210 EEALTGRI-SIFAGQSGVGKSSLLNALLGLQNEILT 244
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 34.1 bits (79), Expect = 0.041
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
VVL+G P VGK+SL + G D +T+ ++ + DT
Sbjct: 7 VVLLGDPGVGKTSLASLFAGKQ--ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 33.9 bits (78), Expect = 0.051
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 23/137 (16%)
Query: 189 ELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV-GS 247
E +NK I +KL G ++++ G N GK+SL L S
Sbjct: 18 EGSINKRKISQWREWIDEKLGGGSGGGGSY-----QPSIIIAGPQNSGKTSLLTLLTTDS 72
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
V S + + D G + K++ +++ K +
Sbjct: 73 VRPTVVSQEP------LSAADYDGSGVTLVDFPG----HVKLRYKLSDYLKTRAKFV--- 119
Query: 308 LKNSDIIIYVQDARYDK 324
+I++ D+ D
Sbjct: 120 ----KGLIFMVDSTVDP 132
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 34.2 bits (79), Expect = 0.054
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-----FLFKITDTAG 281
VVLIG+ VGKS+L N G ++ + D +T+ ++ L + + G
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 33.7 bits (78), Expect = 0.065
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
N+ ++G+ GKS+L + ++ D + ++ ++ DTA
Sbjct: 23 NLAILGRRGAGKSALTVKFLTK--RFISEYDPNLEDTYSSEETVDHQPVHLRVMDTAD 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 33.9 bits (78), Expect = 0.065
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 208 LLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTI 267
+ I + + +V G GK++ + + + +T+
Sbjct: 2 SMSTINFANREINFK----IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTL 57
Query: 268 QINKFLFKITDTAGIPDINSKIKKNINEV---EKIGIERTWVE-LKNSDIIIYVQDARYD 323
+ I + G K + ++ V + L+ D I++V D+
Sbjct: 58 FFDFLPLDIGEVKGF-----KTRFHLYTVPGQVF--YNASRKLILRGVDGIVFVADSA-P 109
Query: 324 KHTDFDKKIIKNFPMN----------IPVIYVWNKID 350
+ + ++N N +P++ NK D
Sbjct: 110 NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRD 146
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 34.3 bits (78), Expect = 0.068
Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 26/133 (19%)
Query: 227 VVLIGQPNVGKSS----LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
V+L+G GKSS +F+++ D + S + + + + I +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN--- 58
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDK-----KIIKNFP 337
+ + E++ K+ ++YV D++ + +
Sbjct: 59 ------YFEPSYDSERL--------FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN 104
Query: 338 MNIPVIYVWNKID 350
+I + + +K+D
Sbjct: 105 PSINIEVLIHKVD 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 33.7 bits (78), Expect = 0.071
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+ + G+ VGKS+L + + T I+ +I DTAG
Sbjct: 30 KLAIFGRAGVGKSALVVRFL--TKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 33.3 bits (77), Expect = 0.087
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
V+L+G+ VGKS+L + G D + I ++K + D
Sbjct: 26 VMLVGESGVGKSTLAGTFGG-LQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.10
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 226 NVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
V+ +G + GK+ LF L+ G TSI + K + D G
Sbjct: 9 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIY-KVNNNRGNSLTLIDLPG--- 63
Query: 285 INSKIKKNINEVEKIGIERTWVELK-NSDIIIYVQDARYDKHTDFDKKI 332
+ ++ + K ++ +++V D+ F +++
Sbjct: 64 -HESLRFQL-----------LDRFKSSARAVVFVVDS-----AAFQREV 95
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 34.0 bits (77), Expect = 0.11
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIV-TSIAGTTRDKIT 264
V++ GQ + GK+S L+ +V TT D
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFV 105
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 33.6 bits (78), Expect = 0.11
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 225 LNVVLIGQPNVGKSSLFNSL 244
L V ++G PNVGKS+LFN+L
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.8 bits (74), Expect = 0.13
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 10/159 (6%)
Query: 215 GKKRALIRNGLNVVLIGQPNVGKSSLFNSLV----GSDVAIVTSIAGTTRDKITKTIQIN 270
G G+N+++ G P GK+S+ + G V + +++
Sbjct: 1 GPGSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELD 60
Query: 271 KFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDA------RYDK 324
+ + D + D I + + +++ + + R K
Sbjct: 61 THIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTK 120
Query: 325 HTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+ K +N I I D + +N+
Sbjct: 121 RQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVREND 159
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 33.3 bits (77), Expect = 0.13
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 190 LILNKND--------FFNELIKIKKKLLKII----QQGKKRALIRNGLN---VVLIGQPN 234
+++NK D EL +I L I+ + G ++ L + G
Sbjct: 120 MVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSG 179
Query: 235 VGKSSLFNSLV 245
VGKSSL N++
Sbjct: 180 VGKSSLLNAIN 190
Score = 27.5 bits (62), Expect = 8.5
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 339 NIPVIYVWNKIDYSGHQKNINYKNNIANIY--------LSASKRIGINLLRNTLLD 386
+ + V NK+D + ++ + IY SA +GI L+ L
Sbjct: 115 ELETVMVINKMDLY-DEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 32.6 bits (75), Expect = 0.15
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
L + ++G GKSSL + + + T ++ K + ++ L I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTG---SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide
compelx, VHS domain, DXXLL sorting signal, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB:
1jpl_A 1lf8_A*
Length = 171
Score = 32.3 bits (73), Expect = 0.17
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF-SKLINILLDKLINLRTLIE---- 178
N + D + D IN + A+ L+ K S L L L ++
Sbjct: 25 SNRQEDWEYIIGFCDQIN-KELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGR 83
Query: 179 ------FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
F F E +++ K K+K K+++++
Sbjct: 84 RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 32.2 bits (74), Expect = 0.24
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
VV+ G VGKSSL V + T D + I + +ITDT G
Sbjct: 11 VVVFGAGGVGKSSLVLRFV--KGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 32.9 bits (74), Expect = 0.25
Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 217 KRALIRNG--LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLF 274
R ++ G ++++G+ +GKS+L NSL +D + + +I KT+Q+
Sbjct: 22 YRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTD--LYSPEYPGPSHRIKKTVQVE---- 75
Query: 275 KITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI 332
I + ++ I + G +I Y+ D++++ + + + ++
Sbjct: 76 --QSKVLIKEGGVQLLLTIVDTPGFGDAVD-NSNCWQPVIDYI-DSKFEDYLNAESRV 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.26
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 226 NVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
++++ G N GK+SL L S V S + + + D G
Sbjct: 14 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ------EPLSAADYDGSGVTLVDFPG--- 64
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDK 324
+ K++ +++ K + +I++ D+ D
Sbjct: 65 -HVKLRYKLSDYLKTRAKFV-------KGLIFMVDSTVDP 96
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.8 bits (73), Expect = 0.27
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 215 GKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDV-AIVTSIAGTTRDK 262
G++ + +VLIG VG+S + N+L+ + V + TTR
Sbjct: 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.4 bits (73), Expect = 0.35
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 21/155 (13%)
Query: 217 KRALIRNG--LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSI---AGTTRDKITKTIQINK 271
+ G N++ +G+ +GKS+L ++L + + G T +Q +
Sbjct: 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESN 92
Query: 272 FLFKIT--DTAGIPD-IN-----SKIKKNINE------VEKIGIERTWVELKNSDI--II 315
K+T T G D IN I + I+ E++ I R +S I +
Sbjct: 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152
Query: 316 YVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350
Y D +K + +I + K D
Sbjct: 153 YFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKAD 187
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 32.0 bits (72), Expect = 0.35
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 191 ILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG--SD 248
+ D F+ +++ + +++ + N +L+G VGKSSL + +
Sbjct: 8 KTRREDIFD-----REEESRKLEE-----SLENYPLTLLLGIRRVGKSSLLRAFLNERPG 57
Query: 249 VAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVEL 308
+ I R IT+ I + I+ KI N+ + + + E+
Sbjct: 58 ILIDCRELYAERGHITREELIKELQSTISPFQKFQS-KFKISLNLKFLTLEPRKLSLREV 116
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 31.4 bits (72), Expect = 0.38
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
VV++G VGK+SL + V + T + +K + + +F + DTAG
Sbjct: 27 VVILGYRCVGKTSLAHQFV--EGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 30.9 bits (71), Expect = 0.43
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+V++G VGKS+L L+ V T D K + I+ L I DTAG
Sbjct: 6 LVVVGAGGVGKSALTIQLI--QNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 0.53
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 218 RALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
+ + + L G VGKSS+ + L G ++
Sbjct: 160 VDYLEGFICI-LAGPSGVGKSSILSRLTGEELRT 192
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 31.0 bits (71), Expect = 0.53
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+ ++G +VGKSSL V + V S T + TK I +N ++ ++ DTAG
Sbjct: 9 IAILGYRSVGKSSLTIQFV--EGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 63
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 31.0 bits (71), Expect = 0.54
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+V++G VGKS+L + V+ T D TK ++ I DTAG
Sbjct: 12 LVVVGGGGVGKSALTIQFI--QSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation
factor binding protein GGA1, VHS, acidic- cluster
dileucine signal, sorla; 1.70A {Homo sapiens} PDB:
3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A
1jwg_A* 1py1_A*
Length = 149
Score = 30.7 bits (69), Expect = 0.57
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF-SKLINILLDKLINLRTLIE---- 178
LN +LD + + +N A L+ K S + L L T ++
Sbjct: 23 LNKELDWASINGFCEQLN-EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK 81
Query: 179 ------FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
F F E +++ K K+K K+L+++
Sbjct: 82 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYS 123
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 30.5 bits (70), Expect = 0.62
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
V+++G VGKS+L + D + T D K + ++ + I DTAG
Sbjct: 7 VIMVGSGGVGKSALTLQFM-YDEFVEDYEP-TKADSYRKKVVLDGEEVQIDILDTAG 61
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 30.8 bits (70), Expect = 0.63
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVG---SDVAIVTSIAGTTRDKITKTIQIN-KFLFKIT- 277
N + ++++G GK++L L+ SD+ + ++ G D IQI K +
Sbjct: 1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI--DVKDWPIQIRDKRKRDLVL 58
Query: 278 ---DTAG 281
D AG
Sbjct: 59 NVWDFAG 65
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 30.8 bits (69), Expect = 0.64
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 7/149 (4%)
Query: 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
N++L G P VGK++L L ++ R++ ++ I D
Sbjct: 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDED 67
Query: 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIY------VQDARYDKHTDFDKKIIK 334
+ D + + + + I+ V R + +KK+
Sbjct: 68 RVVDELDNQMREGGVI-VDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTD 126
Query: 335 NFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
N I + + +N
Sbjct: 127 NIQCEIFQVLYEEATASYKEEIVHQLPSN 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.78
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 425 QSEKNFEKNLELIAED 440
Q+ K + +L+L A+D
Sbjct: 20 QALKKLQASLKLYADD 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 30.2 bits (69), Expect = 0.80
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
V+L+G VGKSSL N V ++ + + K ++++ I DTAG
Sbjct: 10 VILLGDGGVGKSSLMNRYV-TNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 30.7 bits (70), Expect = 0.85
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
V+++G VGKS+L + V T D K + ++ + I DTAG
Sbjct: 17 VIMVGSGGVGKSALTLQFM--YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 30.2 bits (69), Expect = 0.85
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
V+++G VGKS+L + V T D K + ++ + I DTAG
Sbjct: 21 VIMVGSGGVGKSALTLQFM--YDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 30.2 bits (69), Expect = 0.92
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
V + G VGKSSL V S T D + I + +ITDT G
Sbjct: 6 VAVFGAGGVGKSSLVLRFV--KGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 30.3 bits (69), Expect = 0.93
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+V++G VGKS+L L+ V T D K + I+ L I DTAG
Sbjct: 24 LVVVGAGGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.7 bits (68), Expect = 1.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
VV++G VGKS+L V + T D K I+++ + +I DTAG
Sbjct: 6 VVVLGSGGVGKSALTVQFV--TGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 29.9 bits (68), Expect = 1.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+V++G VGKS+L L+ V T D K + I+ L I DTAG
Sbjct: 7 LVVVGADGVGKSALTIQLI--QNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.6 bits (70), Expect = 1.1
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 338 MNIPVIYVWNKIDYSGHQKNINYKNNIANIY---------LSASKRIGINLLRNTLLD 386
+I I K+D Q + A Y S+ + + + D
Sbjct: 116 NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD 173
Score = 29.8 bits (68), Expect = 1.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 218 RALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
++ V GQ VGKSSL N++
Sbjct: 168 IPHFQDKTTV-FAGQSGVGKSSLLNAISPE 196
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 29.8 bits (68), Expect = 1.1
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAG 281
+V++G VGKS+L V T D K +I+ + + DTAG
Sbjct: 21 LVVVGDGGVGKSALTIQFF--QKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein
transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Length = 148
Score = 29.5 bits (66), Expect = 1.1
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF-SKLINILLDKLINLRTLIE---- 178
++ D ++ + +N + + A L+ K S L L L +
Sbjct: 13 SMSEQDWSAIQNFCEQVN-TDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGE 71
Query: 179 ------FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
F F E +++ K K+K ++++I+
Sbjct: 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 27/69 (39%)
Query: 227 VVLIGQPNVGKSSL------------FNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KF 272
+VL+G GK++ + + +G +V N
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-------------PLVFHTNRGPI 64
Query: 273 LFKITDTAG 281
F + DTAG
Sbjct: 65 KFNVWDTAG 73
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus
subtilis subsp}
Length = 197
Score = 29.6 bits (67), Expect = 1.6
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 173 LRTLIEFSFDFPEENQELIL---------NKNDFFNELIK-IKKKLLKIIQQGKKRALIR 222
L LI+ +F E ++++I+ + + + + + L KII + +
Sbjct: 87 LDILIDETFLITERHKDIIVLCYSGLAIDHSMEKWETIYQPYYSWLEKIINKAIANHEVT 146
Query: 223 NGLNVVLI 230
G+N
Sbjct: 147 EGINSKWT 154
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 29.5 bits (67), Expect = 1.6
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG +VGK+S F S V I D KT+ + K I
Sbjct: 25 LLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI---------DFKVKTVYRHDKRIKLQI 75
Query: 277 TDTAG 281
DTAG
Sbjct: 76 WDTAG 80
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.4 bits (67), Expect = 1.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDV-AIVTSIAGTTRDK 262
+VL+G VG+ + N+L+ I TTR
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 28.7 bits (64), Expect = 1.8
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLN 226
++ +LL +++ G I+ G N
Sbjct: 14 ELSLELLNLVKHGASLQAIKRGAN 37
>3nrg_A TETR family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Length = 217
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/111 (9%), Positives = 33/111 (29%), Gaps = 12/111 (10%)
Query: 126 NKLDLIQ--VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLIN----LRTLIEF 179
+K D ++ I+ A ++ + L+++ + + + +
Sbjct: 56 DKKDCYLYLIQLGIEQKTAFLRQTPPASTTDMFAYLRWLLDVGIQFQFHNPRLAQIAYKA 115
Query: 180 SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLI 230
+D E + K ++++QG + L+
Sbjct: 116 LYDDVPLPAETMQVIRHGSFAYFK------QLVEQGIADGSLVPDLDADTA 160
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 184 PEENQELI-LNKNDFFNELIK----------IKKKLLKIIQQGKKRALIRNGLNVVLIGQ 232
P E +E L D + + K L + + L+V+L G
Sbjct: 190 PAELEEFRELADKDPLTTFARAIAPLPGAEEVGKMLALQLFSCVGK--NSERLHVLLAGY 247
Query: 233 PNVGKSSL 240
P V L
Sbjct: 248 PVVCSEIL 255
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.8 bits (68), Expect = 1.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 227 VVLIGQPNVGKSSL 240
V L+G PN GKSSL
Sbjct: 160 VGLVGYPNAGKSSL 173
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 29.5 bits (67), Expect = 1.9
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
V+++G VGK+SL N V + A D +TK + ++ L I DTAG
Sbjct: 11 VIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 29.2 bits (66), Expect = 2.0
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
VVLIG VGKS+L FN S + + + T++IQ++ K I
Sbjct: 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV---------EFATRSIQVDGKTIKAQI 58
Query: 277 TDTAG 281
DTAG
Sbjct: 59 WDTAG 63
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 29.0 bits (66), Expect = 2.0
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
V L+G VGKSS+ F+ + + +TKT+Q L K I
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA---------SFMTKTVQYQNELHKFLI 59
Query: 277 TDTAG 281
DTAG
Sbjct: 60 WDTAG 64
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 29.2 bits (66), Expect = 2.0
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKI 276
+V +G+ +VGK+SL F++ + + I D ++KT+ + ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI---------DFLSKTMYLEDRTVRLQL 69
Query: 277 TDTAG 281
DTAG
Sbjct: 70 WDTAG 74
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 29.1 bits (66), Expect = 2.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
VVLIG VGKS+L FN S + + + T++IQ++ K I
Sbjct: 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV---------EFATRSIQVDGKTIKAQI 82
Query: 277 TDTAG 281
DTAG
Sbjct: 83 WDTAG 87
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 29.2 bits (66), Expect = 2.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGKS L + + S + + D KT++++ K I
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV---------DFKIKTVELDGKTVKLQI 61
Query: 277 TDTAG 281
DTAG
Sbjct: 62 WDTAG 66
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 28.6 bits (65), Expect = 2.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VL+G+ VGKSSL F+ S + +T+T+ ++ K I
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA---------AFLTQTVCLDDTTVKFEI 59
Query: 277 TDTAG 281
DTAG
Sbjct: 60 WDTAG 64
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 28.6 bits (65), Expect = 2.7
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
VVL+G+ VGK+SL FN + + +TK + I I
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA---------SFLTKKLNIGGKRVNLAI 59
Query: 277 TDTAG 281
DTAG
Sbjct: 60 WDTAG 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 28.9 bits (65), Expect = 2.7
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VLIG VGKS+L FN S + + + T+T++I K I
Sbjct: 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV---------EFATRTLEIEGKRIKAQI 66
Query: 277 TDTAG 281
DTAG
Sbjct: 67 WDTAG 71
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 28.8 bits (65), Expect = 2.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VL+G +VGK+ + F+ GS + + D KT++I K I
Sbjct: 32 LVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV---------DFTMKTLEIQGKRVKLQI 82
Query: 277 TDTAG 281
DTAG
Sbjct: 83 WDTAG 87
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.1 bits (66), Expect = 2.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 227 VVLIGQPNVGKSSL 240
V L+G P+VGKS+L
Sbjct: 161 VGLVGFPSVGKSTL 174
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 28.7 bits (65), Expect = 2.9
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++IG VGKS L F + + + + T+ I+++ K I
Sbjct: 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV---------EFGTRIIEVSGQKIKLQI 68
Query: 277 TDTAG 281
DTAG
Sbjct: 69 WDTAG 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 28.7 bits (65), Expect = 3.0
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++IG GKS L F + + + ++ + + K I
Sbjct: 28 FLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV---------EFGSRVVNVGGKTVKLQI 78
Query: 277 TDTAG 281
DTAG
Sbjct: 79 WDTAG 83
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 28.8 bits (65), Expect = 3.0
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+++IG+ VGKSSL F+ + + + + D KTI ++ K I
Sbjct: 18 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGV---------DFKVKTISVDGNKAKLAI 68
Query: 277 TDTAG 281
DTAG
Sbjct: 69 WDTAG 73
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 28.7 bits (65), Expect = 3.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
V++IG VGK+SL F S V + D KT+++ + I
Sbjct: 29 VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---------DFKIKTVELRGKKIRLQI 79
Query: 277 TDTAG 281
DTAG
Sbjct: 80 WDTAG 84
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 83
Score = 27.3 bits (60), Expect = 3.0
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 419 AIKIINQSEK--NFEKNLELIAEDLRFCHEKLSSI 451
+ + Q E+ E+ L+ I +D++ + L +
Sbjct: 47 LVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 28.7 bits (65), Expect = 3.0
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+++IG NVGK+ L F + + + D + + I+ K +
Sbjct: 23 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV---------DFRERAVDIDGERIKIQL 73
Query: 277 TDTAG 281
DTAG
Sbjct: 74 WDTAG 78
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 28.7 bits (65), Expect = 3.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
VVLIG+ VGK++L F+ + + + + T+T+ + K I
Sbjct: 28 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV---------EFSTRTVMLGTAAVKAQI 78
Query: 277 TDTAG 281
DTAG
Sbjct: 79 WDTAG 83
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 28.7 bits (65), Expect = 3.0
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
V L+G VGKSS+ F+ + + +TKT+ L K I
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA---------SFMTKTVPCGNELHKFLI 76
Query: 277 TDTAG 281
DTAG
Sbjct: 77 WDTAG 81
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 28.3 bits (64), Expect = 3.5
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+V +G+ +VGK+SL F++ + + I D ++KT+ + + +
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI---------DFLSKTMYLEDRTVRLQL 67
Query: 277 TDTAG 281
DTAG
Sbjct: 68 WDTAG 72
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A
{Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Length = 206
Score = 28.5 bits (64), Expect = 3.7
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 173 LRTLIEFSFDFPEENQELIL-------NKNDFFNELI-----KIKKKLLKIIQQGKKRAL 220
L +I F + L + N + I L I+ +G +
Sbjct: 85 LALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGE 144
Query: 221 IRNGLNVVLI 230
I+ GL+V L
Sbjct: 145 IKEGLDVRLA 154
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 28.7 bits (65), Expect = 3.7
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 296 VEKIGIERTW-VELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
+ ++ L S + + V D H D + + +F P D +GH
Sbjct: 8 ISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQ-----DGNGH 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 28.3 bits (64), Expect = 3.7
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGK+ + FNS S + I D +TI+++ K I
Sbjct: 11 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI---------DFKIRTIELDGKRIKLQI 61
Query: 277 TDTAG 281
DTAG
Sbjct: 62 WDTAG 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 28.2 bits (63), Expect = 3.8
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VL+G+ VGKSS+ F + +T+ + IN+ K I
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA---------AFLTQRVTINEHTVKFEI 56
Query: 277 TDTAG 281
DTAG
Sbjct: 57 WDTAG 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.3 bits (64), Expect = 4.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 222 RNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR 260
G VVL G VGKS++ L + S++ TTR
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTR 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 28.4 bits (64), Expect = 4.1
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VL G VGKSS F + + + + D KT+ ++ +
Sbjct: 31 IVLAGDAAVGKSSFLMRLCKNEFRENISATLGV---------DFQMKTLIVDGERTVLQL 81
Query: 277 TDTAG 281
DTAG
Sbjct: 82 WDTAG 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 28.4 bits (64), Expect = 4.1
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFK----ITDTAG 281
V ++G+ VGKS+L + + + + + + I + DTAG
Sbjct: 23 VAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAG 82
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 27.6 bits (61), Expect = 4.2
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLN 226
K+ KK+LK +++ K ++ G+
Sbjct: 3 KLNKKVLKTVKKASKAKNVKRGVK 26
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 4.4
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 220 LIRNGLNVVLIGQPNVGKSSL 240
++ + L+ GKS L
Sbjct: 27 MVAGTV-GALVSPGGAGKSML 46
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 28.7 bits (64), Expect = 4.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 283 PDINSKIKKNINEVEKIGIERTWVELK 309
P+ I +N + I ER WVELK
Sbjct: 231 PETLEAIAENAKGLAGISGERIWVELK 257
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 27.9 bits (63), Expect = 4.5
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGKS L FN + + I D KT+ IN K I
Sbjct: 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI---------DFKIKTVDINGKKVKLQI 56
Query: 277 TDTAG 281
DTAG
Sbjct: 57 WDTAG 61
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 27.9 bits (63), Expect = 4.6
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VL+G GKSSL F S + ++T+ +N K I
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA---------AFFSQTLAVNDATVKFEI 65
Query: 277 TDTAG 281
DTAG
Sbjct: 66 WDTAG 70
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 27.8 bits (63), Expect = 4.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
+V++G VGKSS+ + D + + IQ+N + + DTAG
Sbjct: 8 MVVVGNGAVGKSSMIQRYC-KGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 28.4 bits (63), Expect = 5.0
Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 126 NKLDLIQ---VEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRT-LIEFSF 181
+ ++ ++ + ++ ++ +S +F +L LLD + +L + L+EF F
Sbjct: 166 AAFEEMRTNYIKELRKMVTKCPNNSGQS-----WQRFYQLT-KLLDSMHDLVSDLLEFCF 219
Query: 182 DFPEENQELILNKNDFFNELI 202
E+ L + E+I
Sbjct: 220 YTFRESHALKVEFPAMLVEII 240
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription
regulation, DNA-binding, family, transcription,
transcriptional regulator; 2.10A {Bacillus cereus} PDB:
2wv1_A 2jk3_A 2fx0_A
Length = 186
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 173 LRTLIEFSFDFPEENQEL-------ILNKNDFFNELIKIKKKLL----KIIQQGKKRALI 221
LR + +EN E+ I+ ++ ++ +I+Q+G+K+ +
Sbjct: 83 LREYLTVFTTHIKENPEIGTLAYEEIIKESARLEKIKPYFIGSFEQLKEILQEGEKQGVF 142
Query: 222 RNGLNVVLI 230
I
Sbjct: 143 HFFSINHTI 151
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 28.0 bits (63), Expect = 5.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+VLIG VGK+ L F G+ + + D + KT++IN K I
Sbjct: 29 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV---------DFMIKTVEINGEKVKLQI 79
Query: 277 TDTAG 281
DTAG
Sbjct: 80 WDTAG 84
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 27.9 bits (63), Expect = 5.2
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++IG GKS L F + + + +K I + K I
Sbjct: 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV---------EFGSKIINVGGKYVKLQI 63
Query: 277 TDTAG 281
DTAG
Sbjct: 64 WDTAG 68
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 27.9 bits (63), Expect = 5.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+++IG VGKSSL F+ + + + D +T++IN K I
Sbjct: 12 LLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV---------DFKIRTVEINGEKVKLQI 62
Query: 277 TDTAG 281
DTAG
Sbjct: 63 WDTAG 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 28.1 bits (63), Expect = 5.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGKS L FN + + I D KT+ IN K +
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI---------DFKIKTVDINGKKVKLQL 73
Query: 277 TDTAG 281
DTAG
Sbjct: 74 WDTAG 78
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 27.2 bits (60), Expect = 5.8
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVV 228
+ +++L ++QQ ++ G N
Sbjct: 15 ALTQQILDVVQQAANLRQLKKGANEA 40
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 28.0 bits (63), Expect = 6.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+++IG +VGK+S F S V I D KT+ ++ K I
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI---------DFKVKTVYRHEKRVKLQI 76
Query: 277 TDTAG 281
DTAG
Sbjct: 77 WDTAG 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 27.5 bits (62), Expect = 6.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK---FLFKITDTAG 281
V+++G VGK+SL + V +D A D +TK + ++ ++ DTAG
Sbjct: 11 VIILGDSGVGKTSLMHRYV-NDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 27.6 bits (62), Expect = 6.5
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGKS L + S + + D +TI+++ K I
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV---------DFKIRTIELDGKTIKLQI 86
Query: 277 TDTAG 281
DTAG
Sbjct: 87 WDTAG 91
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 27.6 bits (62), Expect = 7.2
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++IG VGKS L F + + + + + + I+ K I
Sbjct: 24 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---------EFGARMVNIDGKQIKLQI 74
Query: 277 TDTAG 281
DTAG
Sbjct: 75 WDTAG 79
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding,
transcription regulation, transcription regula; HET:
MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Length = 206
Score = 27.8 bits (62), Expect = 7.3
Identities = 12/117 (10%), Positives = 35/117 (29%), Gaps = 25/117 (21%)
Query: 126 NKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPE 185
+ DL V+ +++ + S S I++ L N+ + +
Sbjct: 60 TREDL--VDEVLN-----------HVVRQFSNFLSDNIDLDLHAKENIANITNAMIELVV 106
Query: 186 ENQELI-------LNKNDFFNELI-----KIKKKLLKIIQQGKKRALIRNGLNVVLI 230
++ + + D L + + + + +R + + N +
Sbjct: 107 QDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPEDL 163
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 27.9 bits (63), Expect = 7.4
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 296 VEKIGIERTWVELKNSDIIIYVQDARYD-KHTDFDKKII--KNFPMNIPVIYVWNKIDYS 352
+KI + W + S I + D H D K++ +F V + +
Sbjct: 15 PQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDF-----VDNDSTPQNGN 69
Query: 353 GH 354
GH
Sbjct: 70 GH 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 26.3 bits (57), Expect = 7.7
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 169 KLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVV 228
+ +L ++E P+ Q+LI K K LK ++ I++G V+
Sbjct: 33 VVQDLAQVVEEVIGVPQSFQKLI------------FKGKSLKEMETPLSALGIQDGCRVM 80
Query: 229 LIGQPNVGKSS 239
LIG+ N G SS
Sbjct: 81 LIGKKNSGPSS 91
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 27.6 bits (62), Expect = 8.1
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
+++IG +VGK+S F S V I D KTI N K I
Sbjct: 11 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI---------DFKVKTIYRNDKRIKLQI 61
Query: 277 TDTAG 281
DTAG
Sbjct: 62 WDTAG 66
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 28.0 bits (63), Expect = 8.2
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 26/83 (31%)
Query: 180 SFDFPEENQELIL---NKNDFFNELIK-----------IKKKLL--------KIIQQGKK 217
EE+++ I + +I +K+ L K+++ +
Sbjct: 265 EVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRI 324
Query: 218 RALIRNGLNVVLIGQPNVGKSSL 240
R I ++++IG P KS +
Sbjct: 325 RGDI----HILIIGDPGTAKSQM 343
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 27.1 bits (61), Expect = 8.2
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--ITDTAG 281
V+L+G VGK+ L T I+ D K + ++ K + DTAG
Sbjct: 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 27.2 bits (61), Expect = 9.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 19/65 (29%)
Query: 227 VVLIGQPNVGKSSL--------FNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK--I 276
++LIG VGKS L + S + + D +TI+++ K I
Sbjct: 19 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGV---------DFKIRTIELDGKTIKLQI 69
Query: 277 TDTAG 281
DTAG
Sbjct: 70 WDTAG 74
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.1 bits (61), Expect = 9.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTR 260
GK+SL +LV + I SI+ TTR
Sbjct: 18 AGKTSLVRALVKALAEIKISISHTTR 43
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 27.5 bits (62), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 7/24 (29%)
Query: 247 SDVAIVTSIA-------GTTRDKI 263
SDVA +TSIA G R+ I
Sbjct: 164 SDVAAITSIALDHTDWLGYDRESI 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.391
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,112,225
Number of extensions: 445733
Number of successful extensions: 1683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 215
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)