RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9409
(472 letters)
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain
{Thermotoga maritima [TaxId: 2336]}
Length = 117
Score = 107 bits (267), Expect = 2e-28
Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 6/121 (4%)
Query: 7 PIIGIATPPGRGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDKG 66
I+ +ATPPG+G + I+RLSG + W IV+ + K + + + +N +D+
Sbjct: 3 TIVAVATPPGKGAIAILRLSGPDSWKIVQKHLRTRSKIVPRKA--IHGWIHENGEDVDEV 60
Query: 67 LVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEIGKSIGLRLAMPGEFTKRAFLNN 126
+V+++K+P SYTGED++E+ HGGP+++ LL L+ G R+A PGEFTKRAFLN
Sbjct: 61 VVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSG----ARMAEPGEFTKRAFLNG 116
Query: 127 K 127
K
Sbjct: 117 K 117
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 89.7 bits (221), Expect = 8e-22
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 12/165 (7%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L +V++G+PNVGKS+L N L+ D AIVT I GTTRD I++ I I LF+I DTAG+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV-- 58
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ + VE++GIERT E++ +DI+++V DA + D+KI++ +
Sbjct: 59 ----RSETNDLVERLGIERTLQEIEKADIVLFVLDA-SSPLDEEDRKILERIKNKRY-LV 112
Query: 345 VWNKIDYSGHQKNINYKNNIAN----IYLSASKRIGINLLRNTLL 385
V NK+D KN + + +SA K G+ L ++
Sbjct: 113 VINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIY 157
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 83.2 bits (204), Expect = 2e-19
Identities = 34/180 (18%), Positives = 66/180 (36%), Gaps = 18/180 (10%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
+V L+G PN GKSSL ++ + I T + + F + D G
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPG---- 58
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD-----ARYDKHTDFDKKIIKNFPMNI 340
I + +E + +G+ + + +++YV D + + + +
Sbjct: 59 ---IIEGASEGKGLGL-EFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR 114
Query: 341 PVIYVWNKIDYSGH-----QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
P + NK+D + + +A + +SA G+ L+ L L+ T E
Sbjct: 115 PSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPE 174
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 79.1 bits (194), Expect = 7e-18
Identities = 34/181 (18%), Positives = 70/181 (38%), Gaps = 20/181 (11%)
Query: 128 LDLIQVEAIIDLINASTESAAKSAMISLSGKFSKLINILLDKLINLRTLIEFSFDFPEEN 187
+DL EA+ DLI A +E++ K ++ +L G ++ L +LI + I D+P+E
Sbjct: 1 MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEI 60
Query: 188 QELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGS 247
+ N + L +IK+KL + +++ L+ G + G +
Sbjct: 61 E---TNTGEVVTRLERIKEKLTEELKKADAGILLNRGQEIFERGSDS-------LITNLR 110
Query: 248 DVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVE 307
++ ++ G D I + D +N ++++ +
Sbjct: 111 QKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA----------LNLLDEVTGRSFRED 160
Query: 308 L 308
L
Sbjct: 161 L 161
Score = 57.1 bits (137), Expect = 3e-10
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 395 ESSPYLARERHIHSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSIIGK 454
S + R L +L AIK + + +++ + DL L + G+
Sbjct: 101 GSDSLITNLRQKQLLENVKGHLEDAIKSLKEGM-----PVDMASIDLERALNLLDEVTGR 155
Query: 455 STTNDLLDNIFSQFCIGK 472
S DLLD IFS FC+GK
Sbjct: 156 SFREDLLDTIFSNFCVGK 173
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 77.8 bits (190), Expect = 2e-17
Identities = 27/171 (15%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+ ++G+PNVGKS+L N L+G ++I + A TTR +I + DT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL---- 63
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + ++ + + + +++I+V + D ++ V
Sbjct: 64 --HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN 121
Query: 347 NKIDYSGHQKNINYKNNIAN-------IYLSASKRIGINLLRNTLLDLIEK 390
+ + + +A+ + +SA + ++ + + + +
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 78.1 bits (191), Expect = 2e-17
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 8/173 (4%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
+V L+G P+VGKS+L + + + I T + + F + D G+ +
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPM--NIPVI 343
+ ++ + IERT V + D+ YD + ++++ + P I
Sbjct: 63 AHQGVGLGHQFLR-HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121
Query: 344 YVWNKIDYSGHQKNIN-----YKNNIANIYLSASKRIGINLLRNTLLDLIEKT 391
V NK+D +N+ ++ +SA R G+ L + + +E T
Sbjct: 122 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 76.3 bits (186), Expect = 5e-17
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
G+ VV+ G+PN GKSSL N+L G + AIVT IAGTTRD + + I I+ I DTAG+
Sbjct: 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ + ++++ E IE+ L D + + I P +P+
Sbjct: 61 EASDEVERIGIERAWQEIEQADRVLFMVD----GTTTDAVDPAEIWPEFIARLPAKLPIT 116
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
V NK D +G ++ N A I LSA G+++LRN L +
Sbjct: 117 VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 74.7 bits (182), Expect = 3e-16
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
I + + V ++G+PNVGKS+LFN+++ + A+V+ I GTTRD + + I+ + DTA
Sbjct: 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64
Query: 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI 340
G+ K + VEK R ++ +D+++ V DA +
Sbjct: 65 GLRR---KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR 121
Query: 341 PVIYVWNKIDYSGH------------QKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
+ V+NK D H ++ + + + I+ SA K I+ + + +
Sbjct: 122 ASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181
Query: 389 EKTQT 393
T
Sbjct: 182 ASYTT 186
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 74.1 bits (181), Expect = 2e-15
Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 16/204 (7%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
+ KLL+++ K+ N L ++++G+ VGKSS NS++G V ++
Sbjct: 13 ATQTKLLELLGNLKQE--DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP 70
Query: 263 ITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY 322
+ + F I DT G+ + +N + ++++ K D+++YV
Sbjct: 71 VMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII------KSFLLDKTIDVLLYVDRLDA 124
Query: 323 DKHTDFDKKIIKN----FPMNI--PVIYVWNKID-YSGHQKNINYKNNIANIYLSASKRI 375
+ + DK + K F I I + + + L R
Sbjct: 125 YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 184
Query: 376 GINLLRNTLLDLIEKTQTIESSPY 399
G +L ++ I IE+S
Sbjct: 185 GASLKKDAQASDIPVV-LIENSGR 207
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 71.7 bits (174), Expect = 2e-15
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V+++G+PNVGKS+LFN LV AIV G TRD + T++ FK+ DT
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT------C 56
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + + E T ++ +D++++V D + + + + I V
Sbjct: 57 GVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA 116
Query: 347 NKIDYSGHQKNINYKNNIAN-----IYLSASKRIGINLLRNTLLDLIEK 390
NK + + + I +SA I ++ + T++ +E+
Sbjct: 117 NKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 165
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 71.7 bits (174), Expect = 3e-15
Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 27/185 (14%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
++ G+ NVGKS+L L G V G TR I+I KI D G +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKI----IEIEWKNHKIIDMPGFGFMM 57
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP--------- 337
K+ ++ + KN D+ + V D + + P
Sbjct: 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117
Query: 338 --MNIPVIYVWNKID-YSGHQKNINY----------KNNIANIYLSASKRIGINLLRNTL 384
++IP I NK+D Q+ IN+ + + I +SA I L+N +
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
Query: 385 LDLIE 389
++I
Sbjct: 178 FEVIR 182
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 67.8 bits (164), Expect = 6e-14
Identities = 30/162 (18%), Positives = 58/162 (35%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V ++G+PNVGKS+L N+L+G VA ++ TTR ++ + + DT G+
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + +++ + + D+ + K + +
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 347 NKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
K + LSA + L+ LL L+
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 67.9 bits (165), Expect = 6e-13
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 28/167 (16%)
Query: 189 ELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVG-- 246
EL + + I L + + + LNV + G+ GKSS N+L G
Sbjct: 30 ELRMRAGNIQLTNSAISDAL---------KEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80
Query: 247 --SDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERT 304
+ A T + T + N D GI N + +
Sbjct: 81 NEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK--------- 130
Query: 305 WVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-PMNIPVIYVWNKID 350
++ D I + R+ D I K M +V K+D
Sbjct: 131 -MKFYEYDFFIIISATRF---KKNDIDIAKAISMMKKEFYFVRTKVD 173
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 58.6 bits (140), Expect = 1e-10
Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 15/173 (8%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
G+ V G+ N GKSS N+L TS I + G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY---DKHTDFDKKIIKNFPMN 339
++ ++K+ + + ++ ++ + D R+ D + + +
Sbjct: 75 AEVPEEMKRKWQRA----LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV 130
Query: 340 IPVIYVWNKIDYSGHQKNIN--------YKNNIANIYLSASKRIGINLLRNTL 384
+ ++ +K+ + +N + ++ S+ K+ G++ LR L
Sbjct: 131 LVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 57.5 bits (137), Expect = 3e-10
Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 18/201 (8%)
Query: 202 IKIKKKLLKIIQQGKKRALIRNGL-NVVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTT 259
+K+ K + +I K GL + L G+ NVGKSS NSL+ +A +S G T
Sbjct: 1 MKVTKSEI-VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT 59
Query: 260 RDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD 319
+ I + S+ + IE + ++ + D
Sbjct: 60 QTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRM-----IETYITTREELKAVVQIVD 114
Query: 320 ARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNINYKNNIAN----------IYL 369
R+ D + IPVI + K D K + + I
Sbjct: 115 LRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174
Query: 370 SASKRIGINLLRNTLLDLIEK 390
S+ + G + + +I +
Sbjct: 175 SSETKKGKDEAWGAIKKMINR 195
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 52.1 bits (124), Expect = 1e-08
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 29/179 (16%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGI 282
++LIG VGK+ + D T I+ D +TI+++ + +I DTAG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSE-DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPM 338
+ + + I+ V D +D ++ + I ++
Sbjct: 66 ERFRTITTAYY---------------RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA 110
Query: 339 NIPVIYVWNKIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
++ + + NK D + + + + I + SA I + TL I+
Sbjct: 111 DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 51.9 bits (123), Expect = 2e-08
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 7/124 (5%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+++ G N GK+SL L V + + + D G +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
K+ + K ++ D A + + I ++
Sbjct: 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE--NGIDILIAC 118
Query: 347 NKID 350
NK +
Sbjct: 119 NKSE 122
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 50.3 bits (119), Expect = 6e-08
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 5/167 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
+++IG +VGK+S S S G T + +I DTAG
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ + ++ + + D + ++ ++
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
V + SA I + L+D+I +
Sbjct: 126 RVVSSERGRQLAD----HLGFEFFEASAKDNINVKQTFERLVDVICE 168
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 49.3 bits (116), Expect = 1e-07
Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++++G GK+++ L +V G + K L G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE-----TVTYKNLKFQVWDLGGLT 60
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ I ++ I + + + K I+ F +
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 345 VWNKIDYSGHQKNINYKNNIANIY-LSASKRIGINLLRNTLLDLIEKTQ 392
+ + K+ I+ SA+K G++ L++ ++ Q
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 49.1 bits (116), Expect = 1e-07
Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 25/177 (14%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGI 282
VVLIG VGKS+L + ++ + S + + T++IQ++ +I DTAG
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARY--DKHTDFDKKIIKNFPMNI 340
I + +++Y + + K++ + NI
Sbjct: 64 ERYRR-------------ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 110
Query: 341 PVIYVWNKIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
++ V NK D + + KNN++ I SA + +L I +
Sbjct: 111 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 167
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 49.0 bits (116), Expect = 1e-07
Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 15/170 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQIN--KFLFKITDTAGI 282
+VLIG VGK+ L A D + KT++IN K +I DTAG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPV 342
S + + + DI + ++ N + + V
Sbjct: 65 ERFRSITQSYYRSANAL--------ILTYDITCEESFRCLPEWLREIEQYASNKVITVLV 116
Query: 343 IYVWNKIDYSGHQKNINY----KNNIANIYLSASKRIGINLLRNTLLDLI 388
+ + + ++ + SA + + L L +
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 48.2 bits (114), Expect = 2e-07
Identities = 38/178 (21%), Positives = 60/178 (33%), Gaps = 28/178 (15%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGI 282
+ ++LIG VGKS L V + I D KT+ I K +I DTAG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPM 338
+ + + II V D + + K + ++
Sbjct: 62 ERFRTITTAYY---------------RGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 106
Query: 339 NIPVIYVWNKIDYSGHQKNINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
++ V NK D + + I I SA +N + TL LI++
Sbjct: 107 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 47.1 bits (111), Expect = 7e-07
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 5/168 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
L +++IG+ VGKSSL + + + G T ++ NK I DTAG
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ + + V D ++ + + + I
Sbjct: 68 RFRTLTPSYYRGAQGV----ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKT 391
N+ K+++ I SA G+ L++ I +T
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 45.4 bits (106), Expect = 2e-06
Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++++G GK+++ L ++ T +T++ F + D G D
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQ-D 55
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ ++ + + I + + R + ++ F +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 345 VWNKIDYSGHQKNINYKNNIANIY-LSASKRIGINLLRNTLLDLI 388
N + + + ++ I A+ G+ + L + +
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 45.0 bits (105), Expect = 3e-06
Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 4/166 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L ++++G N GK+++ G DV + T KT++ F I D G
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKS 58
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ S + + + + + + + ++
Sbjct: 59 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118
Query: 345 VWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
+ + + ++ SA + + LLD I
Sbjct: 119 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 44.9 bits (105), Expect = 3e-06
Identities = 18/165 (10%), Positives = 38/165 (23%), Gaps = 5/165 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
++IG GKS L + + G + +I DTAG
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
S + + + + + + I+ +
Sbjct: 66 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 121
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
++ +N + + SA + I
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 44.9 bits (105), Expect = 4e-06
Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 6/166 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQI--NKFLFKITDTAGIPD 284
V+L+G VGK+ L T I+ D K + + K ++ DTAG
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
S + + + + D I ++ ++ ++
Sbjct: 69 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 128
Query: 345 VWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
V + D + + + + + SA + ++L + +++
Sbjct: 129 VVKRED----GEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 45.1 bits (105), Expect = 6e-06
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 7/134 (5%)
Query: 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKT----IQINKFLFKI 276
IR+ + V ++G + GK++L + + GS VA AG I T I
Sbjct: 3 IRSPI-VSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDF 59
Query: 277 TDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF 336
I + + + +D+ I + D + +
Sbjct: 60 LKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILR 119
Query: 337 PMNIPVIYVWNKID 350
P + NKID
Sbjct: 120 MYRTPFVVAANKID 133
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 43.5 bits (101), Expect = 1e-05
Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 20/176 (11%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+VL+G GK++ + T + K +
Sbjct: 6 LVLVGDGGTGKTTFVKRHL-------------TGEFEKKYVATLGVEVHPLVFHTNRGPI 52
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI--IKNFPMNIPVIY 344
+ EK G R ++ II + + + NIP++
Sbjct: 53 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL 112
Query: 345 VWNKIDYSGHQKNINY-----KNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIE 395
NK+D + K N+ +SA L + +E
Sbjct: 113 CGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 43.2 bits (100), Expect = 1e-05
Identities = 26/171 (15%), Positives = 52/171 (30%), Gaps = 14/171 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
VVLIG+ VGKS+L N G ++ + D +T+ ++ +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT-------IILL 58
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + I + + + +IP+I V
Sbjct: 59 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 118
Query: 347 NKIDYSGHQKNINY-------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
NK D ++ + I SA+ + + L ++ +
Sbjct: 119 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 169
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 44.0 bits (103), Expect = 2e-05
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 12/123 (9%)
Query: 221 IRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRD-----------KITKTIQI 269
N L ++G PNVGKS+ F ++ S + + T D + +
Sbjct: 7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 66
Query: 270 NKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFD 329
K ++ + DI + K + +G I V+ + +
Sbjct: 67 YKPKSRVPAFLTVFDIAG-LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVE 125
Query: 330 KKI 332
+
Sbjct: 126 GDV 128
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 43.5 bits (101), Expect = 2e-05
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 23/133 (17%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
V+ +G + GK+ LF L+ + + L I
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL------- 54
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI----- 340
E + + ++ +++V D+ + D +
Sbjct: 55 --------PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 341 ---PVIYVWNKID 350
++ NK D
Sbjct: 107 NSPSLLIACNKQD 119
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 42.2 bits (98), Expect = 3e-05
Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 27/174 (15%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
++IG VGKS L + +A G + K +I DTAG
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYV----QDARYDKHTDFDKKIIKNFPMNIP 341
+ T + + + V + + Y+ + + N
Sbjct: 67 RA---------------VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV 111
Query: 342 VIYVWNKIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
+I + NK D + K +N + + SA + I
Sbjct: 112 IILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 42.4 bits (98), Expect = 3e-05
Identities = 22/174 (12%), Positives = 42/174 (24%), Gaps = 23/174 (13%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ + L+G GK++ N + I F + +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQF-------------NEDMIPTVGFNMRKITKGNVTI 49
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
I V + Q+ + + K IPV+
Sbjct: 50 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 109
Query: 345 VWNKIDYSGHQKNINY----------KNNIANIYLSASKRIGINLLRNTLLDLI 388
+ NK D G I +S ++ I++ L+
Sbjct: 110 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 42.2 bits (98), Expect = 4e-05
Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 16/182 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGS-----------DVAIVTSIAGTTRDKITKTIQINKFLFK 275
++ +G VGK++ + + + + + K +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 276 ITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN 335
+ DTAG S + + + + V++ + +
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDL---TSQQSFLNVRNWMSQLQANAYCENPDI 124
Query: 336 FPMNIPVIYVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK--TQT 393
+ + + + K I SA+ + TLLDLI K Q
Sbjct: 125 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQC 184
Query: 394 IE 395
+E
Sbjct: 185 VE 186
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 42.2 bits (98), Expect = 4e-05
Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 5/173 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
++LIG VGKS L + S G T + +I DTAG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ I I + ++ + + T K++ ++
Sbjct: 67 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIES 396
V N + + SA + T+ I+++ + ++
Sbjct: 127 RVVEYDVAKEFADA----NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 41.9 bits (97), Expect = 5e-05
Identities = 22/169 (13%), Positives = 58/169 (34%), Gaps = 6/169 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L ++++G GK+++ L +V G +T+ + D G
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLGGQTS 73
Query: 285 INSKIKKNINEVEKIGIE-RTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
I + + + + + + S + ++ ++ + P
Sbjct: 74 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQ 392
+++ + + + + + SA K GI + L+D+I++ Q
Sbjct: 134 LSASEVSKELNLVELK-DRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 41.6 bits (96), Expect = 5e-05
Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
++ +G N GK++L + L +A + T ++ + I F D G
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQAR 58
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKI-IKNFPMNIPVIYV 345
K EV I + + D DA ++ D I ++ P
Sbjct: 59 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 118
Query: 346 WNKIDYSGHQKNINYKNNIAN------IYLSASKRIGIN 378
++ + N I S R G
Sbjct: 119 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 157
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 41.6 bits (96), Expect = 5e-05
Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 15/177 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
L V+++G VGK+SL N V + G + +I DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
S + L +F + P N P +
Sbjct: 63 RFQSLGVAFYRGAD-------CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115
Query: 344 YV-------WNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQT 393
+ ++ Q KNNI SA + I + T+ K +T
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 172
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 41.2 bits (95), Expect = 8e-05
Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G VGKS+L + S I I DTAG +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIII-YVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
+ ++ + E + + + + + I + + K D I+ ++
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ 127
Query: 346 WNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQ 392
+ + + + + + SA R+ ++ + L+ +I K Q
Sbjct: 128 VTQEEGQQLAR----QLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 40.6 bits (94), Expect = 1e-04
Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 27/176 (15%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
++IG VGKS L + G I + +I DTAG
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDA----RYDKHTDFDKKIIKNFPMNIP 341
S + + + V D ++ T + + ++ N+
Sbjct: 66 RSITRSYYR---------------GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV 110
Query: 342 VIYVWNKIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
++ + NK D + + ++ + + SA + I +
Sbjct: 111 IMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 166
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 40.5 bits (93), Expect = 1e-04
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 22/178 (12%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+N+ + G + GK++L L IA T+ Q I +
Sbjct: 6 INLGIFGHIDHGKTTLSKVLTE--------IASTSAHDKLPESQKRGITIDIGFS-AFKL 56
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
N +I I D+ + V DA+ T + ++ NIP+I
Sbjct: 57 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIV 116
Query: 345 VWNKIDYSGHQ-------------KNINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389
V K D +G + ++ + N + I +SA G++ L+N ++ +
Sbjct: 117 VITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 174
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 40.4 bits (93), Expect = 1e-04
Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 5/175 (2%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGS--DVAIVTSIAGTTRDKITKTIQINKFLFKITDTA 280
N L V+++G VGK+SL + V +I K ++ DTA
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTA 60
Query: 281 GIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI 340
G S + + + + I +D + +
Sbjct: 61 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 120
Query: 341 PVIYVWNKIDYSGHQKNINYK--NNIANIYLSASKRIGINLLRNTLL-DLIEKTQ 392
+ +K S K +I SA I ++ + +++ Q
Sbjct: 121 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQ 175
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.4 bits (93), Expect = 1e-04
Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 16/175 (9%)
Query: 223 NGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGI 282
N V + G VGKSSL V + + + +ITDT G
Sbjct: 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 60
Query: 283 PDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPV 342
+ + +I++ + + Q K IK +IP+
Sbjct: 61 HQFPAMQRLSISKGHAFILVYSI---------TSRQSLEELKPIYEQICEIKGDVESIPI 111
Query: 343 IYVWNKIDYSGHQKNINY-------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
+ V NK D S ++ + A + SA + L LL+L ++
Sbjct: 112 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR 166
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 40.0 bits (92), Expect = 2e-04
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 17/173 (9%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G VGKS+L + S ++ I DTAG +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ ++ R I Q +K+ V+ V
Sbjct: 69 AMREQ---------YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL-VG 118
Query: 347 NKIDYSGHQK-------NINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQ 392
NK D ++ +++A SA R+ ++ L+ + K Q
Sbjct: 119 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 40.1 bits (92), Expect = 2e-04
Identities = 18/165 (10%), Positives = 53/165 (32%), Gaps = 6/165 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
+ +V++G VGKSS+ G G + + + DTAG
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ ++ K + + + +D + + + + + I + +
Sbjct: 63 EFDAITKAYYRGAQACVLVFST-----TDRESFEAISSWREKVVAEVGDIPTALVQNKID 117
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
+ + + + + + + S + + ++ + L +
Sbjct: 118 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/164 (11%), Positives = 48/164 (29%), Gaps = 6/164 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V+++G N GK+++ ++V + T + I IN F + D G +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVINNTRFLMWDIGGQESLR 73
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFP-MNIPVIYV 345
S E + + + + + ++ ++
Sbjct: 74 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 133
Query: 346 WNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIE 389
+I +I + A G+ ++ ++
Sbjct: 134 VAEISQFLKLTSIK-DHQWHIQACCALTGEGLCQGLEWMMSRLK 176
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 40.0 bits (92), Expect = 2e-04
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 13/147 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L V++G VGK+ L S ++ T+ G
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYAN----------DAFPEEYVPTVFD--HYAVSVTVGGKQY 57
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYV-QDARYDKHTDFDKKIIKNFPMNIPVI 343
+ E ++ I V A + + +K + N+P +
Sbjct: 58 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL 117
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLS 370
+ +ID K + N++ +
Sbjct: 118 LIGTQIDLRDDPKTLARLNDMKEKPIC 144
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 39.6 bits (91), Expect = 2e-04
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 5/165 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
+VL+G+ VGKSSL V G S G T + F+I DTAG
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
+S + + N + ++ + I+ N +
Sbjct: 69 HSLAPMYYRGAQAAIVVYDI---TNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 346 WNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
+D+ Q + N++ + SA + +N + + + K
Sbjct: 126 KRAVDFQEAQSYAD-DNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 39.5 bits (91), Expect = 2e-04
Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 27/176 (15%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V+++G VGKS+L + + + + + I DTAG D
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNF-----PMNIP 341
+ ++ + + V + + N+P
Sbjct: 67 A---------------IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP 111
Query: 342 VIYVWNKIDYSGHQKNINY-------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
+ V NK D ++ + N+ + SA R ++ + L+ I
Sbjct: 112 FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 38.9 bits (89), Expect = 3e-04
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 3/164 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+ ++G +VGKSSL V V S T + TK I +N + +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
I ++ G + + +I N +++
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 347 NKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
I Y + N A + SA + + ++ EK
Sbjct: 125 RVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 39.9 bits (93), Expect = 4e-04
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAI 251
G ++G PNVGKS+LFN+L + +
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAGIEA 29
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 38.7 bits (89), Expect = 5e-04
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 17/166 (10%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
VV++G VGKS+L V + + + + +I DTAG
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
S I + + + Q + D D+ I +PVI V
Sbjct: 66 SMRDLYIKNGQGFIL----------VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115
Query: 347 NKIDYSGHQ-------KNINYKNNIANIYLSASKRIGINLLRNTLL 385
NK+D + + + + + SA + ++ L ++
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 38.8 bits (89), Expect = 5e-04
Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 38/197 (19%)
Query: 208 LLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTI 267
LL I++ K ++ + ++L+G N GK++L L D++ +T T+ K++
Sbjct: 2 LLSILR--KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT----PTQGFNIKSV 55
Query: 268 QINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTD 327
Q F + D G I +N+DI+IYV D+ D+
Sbjct: 56 QSQGFKLNVWDIGGQRKIR---------------PYWRSYFENTDILIYVIDS-ADRKRF 99
Query: 328 FDKKIIKNFPM------NIPVIYVWNKIDYSGHQKNINYK----------NNIANIYLSA 371
+ + +PV+ NK D SA
Sbjct: 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159
Query: 372 SKRIGINLLRNTLLDLI 388
G+ N + +
Sbjct: 160 LTGEGVQDGMNWVCKNV 176
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 38.6 bits (88), Expect = 5e-04
Identities = 28/171 (16%), Positives = 49/171 (28%), Gaps = 18/171 (10%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
V+L+G P VGKS+L G + AG T D+ L
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY---------- 53
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
I + G + + + + + ++P+I V
Sbjct: 54 -DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 112
Query: 347 NKIDYSGHQKNINY-------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
NK D ++ + I SA+ + L ++ I
Sbjct: 113 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 163
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 38.4 bits (88), Expect = 6e-04
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G VGKS+L L+ + + I L I DTAG + +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + + E + S I+ + + D D ++P++ V
Sbjct: 66 AMRDQYMRTGEGFLC-VFAINNTKSFEDIHQYREQIKRVKDSD---------DVPMVLVG 115
Query: 347 NKIDYSGHQKNINY------KNNIANIYLSASKRIGINLLRNTLLDLIEK 390
NK D + I I SA R G+ TL+ I +
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 38.4 bits (88), Expect = 7e-04
Identities = 13/168 (7%), Positives = 42/168 (25%), Gaps = 4/168 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L + ++G GKSSL + + ++ K + +
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
S + + +E S + + R + ++
Sbjct: 66 KFSGWADAV--IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA--S 121
Query: 345 VWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQ 392
+ + + + A+ + ++ + + + +
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 38.0 bits (87), Expect = 7e-04
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 19/170 (11%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
+V +G+ +VGK+SL + S + G T ++ ++ DTAG
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
S I I + + + + T + + ++ ++ V
Sbjct: 63 RSLIPSYIRDSAAAVVVYDI-----------TNVNSFQQTTKWIDDVRTERGSDVIIMLV 111
Query: 346 WNKIDYSGHQKNINY-------KNNIANIYLSASKRIGINLLRNTLLDLI 388
NK D + ++ + N+ I SA + L + +
Sbjct: 112 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 38.4 bits (88), Expect = 0.001
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI 251
+ + ++G+PNVGKS+ F++ DV I
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEI 27
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 37.9 bits (87), Expect = 0.002
Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 4/176 (2%)
Query: 166 LLDKLINLRTLIEFSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGL 225
D + + F +N + K+ L + + + + + +
Sbjct: 54 KADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAI 113
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
++IG PNVGKS+L N L ++A G T + + ++ DT GI
Sbjct: 114 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKE---LELLDTPGILWP 170
Query: 286 NSKIKKNINEVEKIG-IERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNI 340
+ + + G I+ + + L++ + + ++ + P +I
Sbjct: 171 KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDI 226
Score = 32.1 bits (72), Expect = 0.13
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 300 GIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKID 350
+LK DI+ + DAR + + I N P I + NK D
Sbjct: 5 ARREVTEKLKLIDIVYELVDAR-IPMSSRNPMIED-ILKNKPRIMLLNKAD 53
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 36.5 bits (83), Expect = 0.003
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 11/135 (8%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ V++G VGK+ L S + + + DTAG D
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ + + + I + V A ++ +++ N P+I
Sbjct: 66 YDRLRPLSYPQTDVSLICFSL-----------VSPASFENVRAKWYPEVRHHCPNTPIIL 114
Query: 345 VWNKIDYSGHQKNIN 359
V K+D + I
Sbjct: 115 VGTKLDLRDDKDTIE 129
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 36.2 bits (82), Expect = 0.004
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 3/148 (2%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
+++IG NVGK+ L G + G + I + ++ DTAG
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ ++ + + S + +H I + N +
Sbjct: 63 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDL 121
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSA 371
++ QK + +++ SA
Sbjct: 122 RSAIQVPTDLAQKFAD-THSMPLFETSA 148
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 36.1 bits (82), Expect = 0.004
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G GK+ L V + + + DTAG+ D +
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + + I + + + + +K+F N+P+I V
Sbjct: 65 RLRPLSYPDTDVILMCFSI-----------DSPDSLENIPEKWTPEVKHFCPNVPIILVG 113
Query: 347 NKIDY 351
NK D
Sbjct: 114 NKKDL 118
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 33.8 bits (76), Expect = 0.019
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 5/166 (3%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINK-FLFKITDTAGIPDI 285
VVL+G+ VGK+SL + K K I DTAG
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
++ + + + + + + I +++
Sbjct: 66 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH 125
Query: 346 WNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKT 391
+ ++ + + SA + GI L L + +T
Sbjct: 126 VSIQ----EAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 167
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 34.3 bits (78), Expect = 0.021
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 9/125 (7%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
++L+G GKS++ + V T Q++K F + D G D
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVV-------LTSGIFETKFQVDKVNFHMFDVGGQRDER 61
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKN-FPMNIPVIYV 345
K + N+V I N I Q R + + K I N + I VI
Sbjct: 62 RKWIQCFNDVTAIIF-VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 346 WNKID 350
NK D
Sbjct: 121 LNKQD 125
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 33.9 bits (76), Expect = 0.022
Identities = 18/174 (10%), Positives = 44/174 (25%), Gaps = 14/174 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V +G N GK++L + L + T +++T
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK 75
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + V + L++ + + + + +I ++ P
Sbjct: 76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV---PILILGNKIDRPEAISE 132
Query: 347 NKIDYSGHQKNINY-----------KNNIANIYLSASKRIGINLLRNTLLDLIE 389
++ + S KR G + I+
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 186
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 33.4 bits (75), Expect = 0.023
Identities = 30/165 (18%), Positives = 52/165 (31%), Gaps = 5/165 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIP 283
L V L+G VGKSS+ V S + G + T Q F I DTAG+
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 284 DINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVI 343
+ I ++ + +++ + I+ N +
Sbjct: 65 RFRALAPMYYRGSAAAII---VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121
Query: 344 YVWNKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLI 388
++ + + + + SA I IN L + I
Sbjct: 122 TDVREVMERDAKDYAD-SIHAIFVETSAKNAININELFIEISRRI 165
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 34.1 bits (77), Expect = 0.024
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 296 VEKIGIERTWVE-LKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVWNKIDYSGH 354
+ ++ L S + + V D H D + + +F P N
Sbjct: 8 ISRVQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVA 67
Query: 355 QKNINYKNNIANIY 368
N+I +
Sbjct: 68 GTIAALNNSIGVLG 81
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 33.8 bits (76), Expect = 0.024
Identities = 17/143 (11%), Positives = 39/143 (27%), Gaps = 19/143 (13%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ V++G VGK+ L S + T+ N + + I
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTT----------NKFPSEYVPTVFDNYAVTVM-----IGG 48
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD----ARYDKHTDFDKKIIKNFPMNI 340
+ ++ + +D+ + + ++ + I +
Sbjct: 49 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT 108
Query: 341 PVIYVWNKIDYSGHQKNINYKNN 363
P + V +ID I
Sbjct: 109 PFLLVGTQIDLRDDPSTIEKLAK 131
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 33.1 bits (74), Expect = 0.034
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 4/165 (2%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G VGKS+L I + + DTAG + +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS 66
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ ++ + + V K S + + D + + + V +
Sbjct: 67 AMREQYMRTG-DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM--ILVANKVDLMH 123
Query: 347 NKIDYSGHQKNINYKNNIANIYLSA-SKRIGINLLRNTLLDLIEK 390
+ K + K NI I SA + ++ + L+ +I +
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.3 bits (72), Expect = 0.061
Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 2/164 (1%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G VGKS+L V + + + + +I DTAG
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + + + + + + +++ D +I N +
Sbjct: 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI--LVGNKCDLEDE 123
Query: 347 NKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEK 390
+ Q N A + SA +I +N + L+ I +
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 33.0 bits (74), Expect = 0.069
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 191 ILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVA 250
I+N D + L+ + QGKK + + +L GQP GK+SL +++
Sbjct: 3 IVNFTDK--QFENRLNDNLEELIQGKKA--VESPTAFLLGGQPGSGKTSLRSAIFEETQG 58
Query: 251 IVTSIAGTT 259
V I T
Sbjct: 59 NVIVIDNDT 67
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 32.4 bits (73), Expect = 0.073
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 190 LILNKNDFFNELIKIKKKLLKIIQQGKKRALIRN---------------GLNVVLIGQPN 234
+++NK D ++E K + L+ I G + + G + G
Sbjct: 46 MVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSG 105
Query: 235 VGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLF----KITDTAGI 282
VGKSSL N++ V+ ++ + T F + DT G
Sbjct: 106 VGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 157
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.8 bits (71), Expect = 0.095
Identities = 32/173 (18%), Positives = 51/173 (29%), Gaps = 15/173 (8%)
Query: 227 VVLIGQPNVGKSSLFNSLV-GSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
V+L+G VGKSSL N V + G + + +I DTAG
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYV 345
S + + V+ S + + + D P + P + +
Sbjct: 69 RSLRTPFYRGSDCC-LLTFSVDDSQSFQNLSNWKKEFIYYAD------VKEPESFPFVIL 121
Query: 346 WNKIDYSGH-------QKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKT 391
NKID S Q + SA + + + T
Sbjct: 122 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 174
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.1 bits (72), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTR 260
+V++G + GKSS+ ++VG D S T R
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR 60
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.9 bits (71), Expect = 0.12
Identities = 9/120 (7%), Positives = 33/120 (27%), Gaps = 3/120 (2%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G P GK+ + L I + + + F+ +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 64
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ + + + + R ++ + + ++ + + +
Sbjct: 65 IRKQCALAALNDV---RKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 31.5 bits (70), Expect = 0.13
Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 6/155 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++++G GK+++ L G +T+ F + D G D
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV----ETVTYKNVKFNVWDVGG-QD 67
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ ++ + I ++ + R + II F +
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127
Query: 345 VWNKIDYSGHQKNINYKNNIANIYL-SASKRIGIN 378
+ ++ + A+ G+
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 31.1 bits (69), Expect = 0.17
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 225 LNVVLIGQPNVGKSSLFNSLV 245
+ + + G+ VGKS+L +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFL 23
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.8 bits (68), Expect = 0.19
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSD 248
+ +VL+G+ VGKSS+ V +D
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSND 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.8 bits (68), Expect = 0.21
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 17/140 (12%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
+V++G GK++L + + T+ N DT I
Sbjct: 5 IVVVGDSQCGKTALLHVFAK----------DCFPENYVPTVFENYTASFEIDTQRIELSL 54
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQ---DARYDKHTDFDKKIIKNFPMNIPVI 343
+ + R + ++I D K I+ F N ++
Sbjct: 55 ----WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML 110
Query: 344 YVWNKIDYSGHQKNINYKNN 363
V K D + +N
Sbjct: 111 LVGCKSDLRTDVSTLVELSN 130
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 30.9 bits (69), Expect = 0.26
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFK---ITDTAGI 282
V GQ VGKSSL N++ I+ T + + DT G
Sbjct: 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 158
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.3 bits (67), Expect = 0.31
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 5/127 (3%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
L ++L+G GKS+ + + V + + +F++ D G
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGII-----EYPFDLQSVIFRMVDVGGQRS 57
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
K V I E + ++ + F I + N VI
Sbjct: 58 ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117
Query: 345 VWNKIDY 351
NK D
Sbjct: 118 FLNKKDL 124
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 29.4 bits (66), Expect = 0.44
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF-SKLINILLDKLINLRTLIE---- 178
LN +LD + + +N A L+ K S + L L T ++
Sbjct: 20 LNKELDWASINGFCEQLN-EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK 78
Query: 179 ------FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
F F E +++ K K+K K+L+++
Sbjct: 79 RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYS 120
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 29.9 bits (66), Expect = 0.45
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 29/193 (15%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAI--------VTSIAGTTRDKITKTIQINKFLFKI 276
+N+ ++G + GK++L ++ G + +T G I K +
Sbjct: 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYV 68
Query: 277 TDTAGIP---DINSKIKKNINEVEKIGIER----TWVELKNSDIIIYV-QDARYDKHTDF 328
T+ + D K + I+ ++ G E D I V
Sbjct: 69 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
Query: 329 DKKIIKNFPMNIPVIYVW-NKIDYSGHQKNIN------------YKNNIANIYLSASKRI 375
+ + + + + + NK+D ++ ++ + N+ I +SA +I
Sbjct: 129 REHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 376 GINLLRNTLLDLI 388
I+ L + + I
Sbjct: 189 NIDSLIEGIEEYI 201
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 30.2 bits (67), Expect = 0.46
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGT 258
+ ++G + GKSS+ + VG D S T
Sbjct: 29 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 29.4 bits (66), Expect = 0.48
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKFSK-------LINILLDKLIN---L 173
N + D + D IN + A+ L+ K +L+ +
Sbjct: 14 SNRQEDWEYIIGFCDQIN-KELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGR 72
Query: 174 RTLIEF-SFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
R E F F E +++ K K+K K+++++
Sbjct: 73 RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 114
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.5 bits (65), Expect = 0.55
Identities = 31/226 (13%), Positives = 61/226 (26%), Gaps = 47/226 (20%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDIN 286
VVL G GKS+L L + F F ++ T P
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHS--------------------SIFGFSVSHTTRNPRPG 42
Query: 287 SKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIYVW 346
+ K+ V + ++R + Y + + MN +
Sbjct: 43 EEDGKDYYFVTREMMQRDIAA-GDFIEHAEFSGNLYGTSKEA---VRAVQAMNRICVLDV 98
Query: 347 NKIDYSGHQKNINYKNNIANIYLSASKRIGINLLRNTLLDLIEKTQTIESSPYLARERHI 406
+ +K I + +++ R R+
Sbjct: 99 DLQGVRSIKKTDLCPIYI-----------------------FVQPPSLDVLEQRLRLRNT 135
Query: 407 HSLNEANYYLSCAIKIINQSEKNFEKNLELIAEDLRFCHEKLSSII 452
+ L+ A + S++ +L +I +DL + L +
Sbjct: 136 ETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQAL 181
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 29.6 bits (65), Expect = 0.56
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 10/150 (6%)
Query: 224 GLNVVLIGQPNVGKSS----LFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDT 279
G+N+++ G P GK+S + L G V + +++ + + D
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDE 64
Query: 280 AGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIYVQD------ARYDKHTDFDKKII 333
+ D I + + +++ + R K + K
Sbjct: 65 DRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRA 124
Query: 334 KNFPMNIPVIYVWNKIDYSGHQKNINYKNN 363
+N I I D + +N+
Sbjct: 125 ENMEAEIQCICEEEARDAYEDDIVLVREND 154
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 29.9 bits (66), Expect = 0.65
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 213 QQGKKRALI-----RNGLNVVLIGQPNVGKSSLFNSLVG 246
Q+ K AL+ V++ G GKS+ +L
Sbjct: 12 QEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 50
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.8 bits (66), Expect = 0.78
Identities = 18/145 (12%), Positives = 37/145 (25%), Gaps = 11/145 (7%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLV------GSDVAIVTSIA 256
+ +LL I L + + G P GKS+ + G VA++
Sbjct: 38 ALSTQLLDAIMPYCGNTLR-----LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 92
Query: 257 GTTRDKITKTIQINKFLFKITDTAGIPDINSKIKKNINEVEKIGIERTWVELKNSDIIIY 316
+ + + A ++ E D++I
Sbjct: 93 SSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIV 152
Query: 317 VQDARYDKHTDFDKKIIKNFPMNIP 341
T+ + + + I
Sbjct: 153 ETVGVGQSETEVARMVDCFISLQIA 177
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.7 bits (63), Expect = 1.2
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 6/126 (4%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G GKS+ + T+ +I FK+ D G
Sbjct: 3 VKILLLGAGESGKSTFLKQMRIIHGQD------PTKGIHEYDFEIKNVPFKMVDVGGQRS 56
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ + + V I + E + + + F+ + N+ +I
Sbjct: 57 ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIIL 116
Query: 345 VWNKID 350
NK D
Sbjct: 117 FLNKTD 122
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 94
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 169 KLINLRTLIEFSFDFPEENQELILNKNDF 197
+ L+TLI+ P NQ L N+N
Sbjct: 22 TVSQLKTLIQDQLQIPIHNQTLSTNRNLL 50
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId:
562]}
Length = 158
Score = 28.0 bits (62), Expect = 1.4
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 5/99 (5%)
Query: 8 IIGIATPPG--RGGVGIIRLSGKNLWSIVEIVCKKTKKQLKPRFATYSSFFCKNNNIIDK 65
I+GI PG G G+IR G+ L + + L R + +
Sbjct: 3 ILGI--DPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQP 60
Query: 66 GLVIYFKAPHSYTGEDVIELHGHGGPIILHMLLSSCLEI 104
+ + + ++ G + + ++ L +
Sbjct: 61 DYFAIEQVFMAKNADSALK-LGQARGVAIVAAVNQELPV 98
>d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus
thermophilus [TaxId: 274]}
Length = 132
Score = 27.7 bits (61), Expect = 1.5
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 333 IKNFPMNIPVIYVWNKIDYSGHQKNINY 360
++ FP+ + V + +D GH N +
Sbjct: 1 MEGFPVRVRVDVRFRDLDPLGHVNNAVF 28
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 28.1 bits (62), Expect = 2.0
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 201 LIKIKKKLLKIIQQGKKRAL------IRNGLNVVLIGQPNVGKSSLFNSLVG 246
I +K + K+ ++GK AL I NG ++G GK++ + G
Sbjct: 3 RIIVKN-VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 28.0 bits (61), Expect = 2.1
Identities = 26/191 (13%), Positives = 49/191 (25%), Gaps = 30/191 (15%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+N+ ++G + GK++L +L G + R IT I + G
Sbjct: 6 VNIGMVGHVDHGKTTLTKALTGVWTDTH---SEELRRGITIKIGFADAEIRRCPNCGRYS 62
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDAR------------------YDKHT 326
+ +E E + + ++ +
Sbjct: 63 TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122
Query: 327 DFDKKIIKNFPMNIPVIYVWNKIDYSGHQKNIN---------YKNNIANIYLSASKRIGI 377
I I +D +N N I +SA I
Sbjct: 123 HLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANI 182
Query: 378 NLLRNTLLDLI 388
++L + D I
Sbjct: 183 DVLVKAIEDFI 193
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 28.0 bits (61), Expect = 2.2
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 185 EENQELILNKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSL 240
E+ I+N + + + +++ Q K + ++V+L G P+ GK++L
Sbjct: 1 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTAL 56
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.6 bits (61), Expect = 2.3
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 219 ALIRNGLNVVLIGQPNVGKSSL-------FNSLVGSDVAIVTSIAGTT 259
+ G+ V++ G +GKS + LV D + I+
Sbjct: 10 LVDVYGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDE 57
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.5 bits (61), Expect = 2.3
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 124 LNNKLDLIQVEAIIDLINASTESAAKSAMISLSGKF-SKLINILLDKLINLRTLIE---- 178
++ D ++ + +N + + A L+ K S L L L +
Sbjct: 13 SMSEQDWSAIQNFCEQVN-TDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGE 71
Query: 179 ------FSFDFPEENQELILNKNDFFNELIKIKKKLLKIIQQ 214
F F E +++ K K+K ++++I+
Sbjct: 72 KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.9 bits (61), Expect = 2.4
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSD--VAIVTSIAGTTR 260
G ++ GKSSL +L+ + S++ TTR
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR 40
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 2.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 224 GLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
G VVL G VGKS++ L + S++ TTR
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP 40
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 27.7 bits (61), Expect = 3.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 226 NVVLIGQPNVGKSSL 240
N VLIG+P VGK+++
Sbjct: 45 NPVLIGEPGVGKTAI 59
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.9 bits (58), Expect = 4.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVG 246
+ +++ G+P VGK++L +V
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVE 22
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.7 bits (58), Expect = 4.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 227 VVLIGQPNVGKSSLFNSLVGSD-VAIVTSIAGTTRDK 262
+VL+G VG+ + N+L+ I TTR
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 42
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 4.9
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 203 KIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDK 262
+ L+ + RA+ V + G P VGKS+ ++L A +A D
Sbjct: 35 AAVRDLIDAVLPQTGRAIR-----VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89
Query: 263 ITKTIQIN 270
+ +
Sbjct: 90 SSTRTGGS 97
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured
thermotogales bacterium [TaxId: 221214]}
Length = 217
Score = 26.6 bits (58), Expect = 5.0
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 339 NIPVIYVWNKIDYSGHQKNINYKNNIA-NIYLSASKRIGINLLRNTLLDLIEKTQTIESS 397
I + + YSG + + S + R IN +L + +T E++
Sbjct: 135 AIGAVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRSSINHFHEKILKIRPETFWTETA 194
Query: 398 PYLARERH 405
+A +R+
Sbjct: 195 RKMAEDRY 202
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 5.5
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 8/127 (6%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+ ++L+G GKS++ + A + FK+ D G
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGI--------VETHFTFKDLHFKMFDVGGQRS 54
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
K V I + + ++ FD + + +I
Sbjct: 55 ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114
Query: 345 VWNKIDY 351
NK D
Sbjct: 115 FLNKKDL 121
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.4 bits (58), Expect = 5.9
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 219 ALIRNGLNVVLIGQPNVGKSSLFNSL-------VGSDVAIVTSIAGTT 259
+ GL V++ G VGKS L + D V T
Sbjct: 9 LVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQT 56
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.5 bits (58), Expect = 6.7
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 147 AAKSAMISLSGKFSKLINILLDKLIN-LRTLIEFSFDFPEENQELILNKNDFFNELIKIK 205
+ + L+ I+ DK + E S + + ++ +N F + +
Sbjct: 39 SVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGW 98
Query: 206 KKLLKIIQQGKKRALIRNGL------NVVLIGQPNVGKSSL 240
L G + G V++ G+ N GK+ L
Sbjct: 99 LVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPL 139
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.6 bits (57), Expect = 7.0
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 193 NKNDFFNELIKIKKKLLKIIQQGKKRALIRNGLNVVLIGQPNVGKSSLFNSL 244
N+ DFF+ ++K ++ ++ + +++G GKSS+
Sbjct: 10 NRKDFFD-----REKEIEKLKGLRAP-------ITLVLGLRRTGKSSIIKIG 49
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.0 bits (56), Expect = 9.4
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 1/140 (0%)
Query: 225 LNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPD 284
+N+VL+G P GK + + +V S R I + ++ D G
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMD-QGALV 59
Query: 285 INSKIKKNINEVEKIGIERTWVELKNSDIIIYVQDARYDKHTDFDKKIIKNFPMNIPVIY 344
+ + E L + +A D +KI + +
Sbjct: 60 PDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEE 119
Query: 345 VWNKIDYSGHQKNINYKNNI 364
+ ++ + + + +
Sbjct: 120 LIARLTADDNPDTVTNRLEV 139
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 26.0 bits (56), Expect = 9.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 220 LIRNGLNVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKT 266
+IR V L+G GK++L +L+ A G + T T
Sbjct: 1 MIRT---VALVGHAGSGKTTLTEALLYKTGAK--ERRGRVEEGTTTT 42
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.7 bits (55), Expect = 10.0
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 7/144 (4%)
Query: 226 NVVLIGQPNVGKSSLFNSLVGSDVAIVTSIAGTTRDKITKTIQINKFLFKITDTAGIPDI 285
N++L G P VGK++L L ++ R++ ++ I D + D
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 65
Query: 286 NSKIKKNINEVEKIGIERTWVELKNSDIIIY------VQDARYDKHTDFDKKIIKNFPMN 339
+ V + + I+ V R + +KK+ N
Sbjct: 66 LDNQMREGG-VIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 124
Query: 340 IPVIYVWNKIDYSGHQKNINYKNN 363
I + + +N
Sbjct: 125 IFQVLYEEATASYKEEIVHQLPSN 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.391
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,754,739
Number of extensions: 86801
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 155
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (26.0 bits)