RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy941
(487 letters)
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication,
recombination, and repair].
Length = 194
Score = 35.1 bits (81), Expect = 0.040
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 218 IKAHVD-SVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFT 276
I H D +A LSL + + +L + + + + L+ + VM +R +
Sbjct: 119 IGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWH 178
Query: 277 HEV 279
H +
Sbjct: 179 HII 181
Score = 35.1 bits (81), Expect = 0.040
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 414 IKAHVD-SVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFT 472
I H D +A LSL + + +L + + + + L+ + VM +R +
Sbjct: 119 IGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWH 178
Query: 473 HEV 475
H +
Sbjct: 179 HII 181
>gnl|CDD|178154 PLN02539, PLN02539, glucose-6-phosphate 1-dehydrogenase.
Length = 491
Score = 34.7 bits (80), Expect = 0.11
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 108 FLPSNQSHIFNEHCDGAVKSSILSNML--VINDFLSAEEEQSLLKEINQFIKRQRYEYDH 165
FLP ++ HIF G +S I L I +L E+ + +++F++ +Y
Sbjct: 46 FLPPDEVHIF-----GYARSKITDEELRDRIRGYLKDEKNAP-AEAVSKFLQLIKYVSGA 99
Query: 166 WDDAIHGFR-------ETERSKWNEENTKIIARVQNLAFPPNVTP 203
+D GFR E E SK + E + R+ LA PP+V P
Sbjct: 100 YDSE-EGFRRLDKEISEHEISKNSAEGSS--RRLFYLALPPSVYP 141
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.
Length = 190
Score = 33.0 bits (76), Expect = 0.22
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 38/191 (19%)
Query: 133 MLVINDFLSAEEEQSLLKEI-----------------NQFIKRQRYEYDHWDDAIHGFRE 175
++++ FLSAEE+ +LL+E+ + + D G+R
Sbjct: 2 LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTD--GPGYRY 59
Query: 176 TERSKWNEENTKIIARVQNLA-----------FPPNVTPIQYVHVLDLEQKGYIKAHVD- 223
+ E A + LA F PN + + + H D
Sbjct: 60 SGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRP-----GARMGLHQDK 114
Query: 224 SVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHE--VLE 281
G I +SL ++ + + I + L+ + VM +R + +
Sbjct: 115 DELDFGAPIVSVSLGDPALFRFGGKTRDDPTIALPLESGDVLVMGGPSRLAYHGVPRIKP 174
Query: 282 NEKSYFGDLRF 292
G R
Sbjct: 175 GTHPLLGGGRI 185
Score = 31.5 bits (72), Expect = 0.70
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 36/172 (20%)
Query: 329 MLVINDFLSAEEEQSLLKEI-----------------NQFIKRQRYEYDHWDDAIHGFRE 371
++++ FLSAEE+ +LL+E+ + + D G+R
Sbjct: 2 LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTD--GPGYRY 59
Query: 372 TERSKWNEENTKIIARVQNLA-----------FPPNVTPIQYVHVLDLEQKGYIKAHVD- 419
+ E A + LA F PN + + + H D
Sbjct: 60 SGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRP-----GARMGLHQDK 114
Query: 420 SVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKF 471
G I +SL ++ + + I + L+ + VM +R +
Sbjct: 115 DELDFGAPIVSVSLGDPALFRFGGKTRDDPTIALPLESGDVLVMGGPSRLAY 166
>gnl|CDD|181362 PRK08296, PRK08296, hypothetical protein; Provisional.
Length = 603
Score = 33.5 bits (77), Expect = 0.29
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 155 FIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFP--PNVTPIQYVHVLDL 212
F +R + Y +WD +KW E+ II ++ L FP P+V P + V
Sbjct: 114 FQERAGFYYQNWDPLY--------AKWKEKVLAIIKELEALEFPPLPDVEPEEVV----F 161
Query: 213 EQKGY 217
E +G
Sbjct: 162 EGRGE 166
Score = 33.5 bits (77), Expect = 0.29
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 351 FIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFP--PNVTPIQYVHVLDL 408
F +R + Y +WD +KW E+ II ++ L FP P+V P + V
Sbjct: 114 FQERAGFYYQNWDPLY--------AKWKEKVLAIIKELEALEFPPLPDVEPEEVV----F 161
Query: 409 EQKGY 413
E +G
Sbjct: 162 EGRGE 166
>gnl|CDD|225014 COG2103, COG2103, Predicted sugar phosphate isomerase [General
function prediction only].
Length = 298
Score = 29.6 bits (67), Expect = 3.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 119 EHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKR 158
E G VK +I+ ML+ LSAEE + LL+ F+++
Sbjct: 256 EEAGGNVKLAIV--MLLTG--LSAEEAKRLLERAGGFLRQ 291
Score = 29.6 bits (67), Expect = 3.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 315 EHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKR 354
E G VK +I+ ML+ LSAEE + LL+ F+++
Sbjct: 256 EEAGGNVKLAIV--MLLTG--LSAEEAKRLLERAGGFLRQ 291
>gnl|CDD|192656 pfam10692, DUF2498, Protein of unknown function (DUF2498). Members
of this family are Gammaproteobacteria. Many are
annotated as like E coli protein YciN. The function is
not known.
Length = 82
Score = 27.4 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 144 EEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETE 177
+ ++LL+E NQ I+ +H +D I G R T
Sbjct: 8 DRETLLEEANQIIR------EH-EDYIAGMRATS 34
Score = 27.4 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 340 EEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETE 373
+ ++LL+E NQ I+ +H +D I G R T
Sbjct: 8 DRETLLEEANQIIR------EH-EDYIAGMRATS 34
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 29.4 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 173 FRETERSKWNEENTKIIAR---VQNLAFPPNVTPIQYVHVLDLEQKGYIKA------HVD 223
R W+EE +A VQ + P Y D++ KG+I VD
Sbjct: 420 LLRDLRELWSEEMKNELAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQPFVD 479
Query: 224 S 224
Sbjct: 480 Q 480
Score = 29.4 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 369 FRETERSKWNEENTKIIAR---VQNLAFPPNVTPIQYVHVLDLEQKGYIKA------HVD 419
R W+EE +A VQ + P Y D++ KG+I VD
Sbjct: 420 LLRDLRELWSEEMKNELAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQPFVD 479
Query: 420 S 420
Sbjct: 480 Q 480
>gnl|CDD|218749 pfam05788, Orbi_VP1, Orbivirus RNA-dependent RNA polymerase (VP1).
This family consists of the RNA-dependent RNA polymerase
protein VP1 from the Orbiviruses. VP1 may have both
enzymatic and structural roles in the virus life cycle.
Length = 1301
Score = 29.0 bits (65), Expect = 8.5
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 37 TQLRKKDISIPLQSNKYSPLESPDLSPPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQA 95
TQ K+ I + + +S + P + LN N ++M ++ + D SPT + KTM+ +
Sbjct: 969 TQADKRAIGTDTKMSFFSKMARPAVQTVLN-NPEIMDAVEELPLGDFSPTRISKTMMHS 1026
>gnl|CDD|182919 PRK11037, PRK11037, hypothetical protein; Provisional.
Length = 83
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 144 EEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETE 177
+ ++LL E N+ I+ +H +D + G R T+
Sbjct: 9 DRETLLLEANKIIR------EH-EDYLAGMRATD 35
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 340 EEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETE 373
+ ++LL E N+ I+ +H +D + G R T+
Sbjct: 9 DRETLLLEANKIIR------EH-EDYLAGMRATD 35
>gnl|CDD|224522 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only].
Length = 269
Score = 28.1 bits (63), Expect = 9.6
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 136 INDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNL 195
+ D EE + L+E+ R R E + A+ E K E +I +++ +
Sbjct: 187 VEDLKKVEEAEEFLRELGVRQIRVRSEDNL---AVIEVGPEEPEKLLNEVEEIDDKLKKV 243
Query: 196 AF 197
F
Sbjct: 244 GF 245
Score = 28.1 bits (63), Expect = 9.6
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 332 INDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNL 391
+ D EE + L+E+ R R E + A+ E K E +I +++ +
Sbjct: 187 VEDLKKVEEAEEFLRELGVRQIRVRSEDNL---AVIEVGPEEPEKLLNEVEEIDDKLKKV 243
Query: 392 AF 393
F
Sbjct: 244 GF 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,304,434
Number of extensions: 2339239
Number of successful extensions: 2317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2317
Number of HSP's successfully gapped: 42
Length of query: 487
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 386
Effective length of database: 6,457,848
Effective search space: 2492729328
Effective search space used: 2492729328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)