RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy941
(487 letters)
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Length = 345
Score = 89.5 bits (221), Expect = 9e-20
Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 15/217 (6%)
Query: 80 FKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDF 139
F T K + + + + + ++ ++V+ +
Sbjct: 60 FARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWKELRPQALPPGLMVVEEI 119
Query: 140 LSAEEEQSLLKEINQF---------IKRQRYEYDHWDDAIH--GFRETERSKWNEENTKI 188
+S+EEE+ LL+ ++ + H+ H + + I
Sbjct: 120 ISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDI 179
Query: 189 IARVQNLAFPPNVTPIQY--VHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLV 246
+ + + E I AH+D+ + I LSL S+ VM
Sbjct: 180 CESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFK 239
Query: 247 DEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENE 283
V+L +RSL VM ++RY +TH + +
Sbjct: 240 HPDGIAVP--VMLPRRSLLVMTGESRYLWTHGITCRK 274
Score = 86.8 bits (214), Expect = 7e-19
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 15/171 (8%)
Query: 323 SSILSNMLVINDFLSAEEEQSLLKEINQF---------IKRQRYEYDHWDDAIH--GFRE 371
++ ++V+ + +S+EEE+ LL+ ++ + H+ H
Sbjct: 107 QALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNV 166
Query: 372 TERSKWNEENTKIIARVQNLAFPPNVTPIQY--VHVLDLEQKGYIKAHVDSVRFCGNTIA 429
+ + I + + + E I AH+D+ + I
Sbjct: 167 DKDKPLSGGLPDICESFLEKWLRKGYIKHKPDQMTINQYEPGQGIPAHIDTHSAFEDEIV 226
Query: 430 GLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVLENES 480
LSL S+ VM V+L +RSL VM ++RY +TH + +
Sbjct: 227 SLSLGSEIVMDFKHPDGIAVP--VMLPRRSLLVMTGESRYLWTHGITCRKF 275
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 70/494 (14%), Positives = 135/494 (27%), Gaps = 144/494 (29%)
Query: 68 NMDLMSDLQHVIFKDCSPTSVQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKS 127
D++S + + VQ + HI K
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSK------------EEIDHIIMS------KD 59
Query: 128 SILSNMLVINDFLSAEEEQSLLKEINQFIKRQ-RYEYDHWDDAIHGF---RETERSKWNE 183
++ + + LS +EE + +F++ R Y I + E
Sbjct: 60 AVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 184 ENTKIIARVQNLAFPP-NVTPIQYVHVL-----DLEQKGYIKAHVDSVRFCGNTI-AGLS 236
+ ++ Q F NV+ +Q L +L + V G T A
Sbjct: 115 QRDRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVALDV 170
Query: 237 LLSDSVMKLVD---------EKTKTQEILVLLKQRSLYVMKD-------DARYKFTHEVL 280
LS V +D + +L +L++ + + + K +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 281 ENEKSYFGDLRFKTFP---LIHSHQSSTSSNQSHI--FNEHC-------DGAVKSSILSN 328
+ E L+ K + L+ + N FN C V + +
Sbjct: 231 QAELRRL--LKSKPYENCLLVLLN----VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 329 M---LVINDF---LSAEEEQSLL------------KE--------INQFIKRQRYEYDHW 362
+ ++ L+ +E +SLL +E ++ + R W
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 363 D-------DAIHGFRETERSKWNEENTKIIARVQNLA-FPPNVTPIQYVHVLDLEQKGYI 414
D D + E+ + + L+ FPP+ +I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSA---------------HI 387
Query: 415 KAHVDSVRFCGNTIAGLSLL-SDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFT- 472
+ LSL+ D K+ ++ L + SL V K +
Sbjct: 388 PTIL------------LSLIWFDV------IKSDVMVVVNKLHKYSL-VEKQPKESTISI 428
Query: 473 HEVLENESLDCLNL 486
+ + N
Sbjct: 429 PSIYLELKVKLENE 442
Score = 47.9 bits (113), Expect = 7e-06
Identities = 63/475 (13%), Positives = 134/475 (28%), Gaps = 134/475 (28%)
Query: 12 YKGLRSKLKEDK-------HGEA---KS----HSAPSSPTQL---------------RKK 42
Y LR L E + G K+ S Q +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 43 DISIPLQS------NKYSPLESPDLSPPLNINM------DLMSDLQH----VIFKD-CSP 85
+ LQ ++ + L I+ L+ + ++ + +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 86 TSVQ------KTMLQAIPSLPPPAVPAKFLPSNQSHIF-NEHCDGAVKS---SILSNMLV 135
+ K +L V + +HI + H S+L L
Sbjct: 257 KAWNAFNLSCKILLTTRFK----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 136 INDF-LSAEEEQSLLKEINQFIKRQRYEYDHWD-------DAIHGFRETERSKWNEENTK 187
L E + + ++ + R WD D + E+ + +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 188 IIARVQNLA-FPPNVT-PIQYVHVL--------------DLEQKGYIKAHVDSVRFCGNT 231
L+ FPP+ P + ++ L + ++ +
Sbjct: 373 --KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI---S 427
Query: 232 IAGLSLLSDSVMKLVDEKTKTQEIL------VLLKQRSLYVMKDDARYKFTH-----EVL 280
I + L + +KL +E + I+ L D +Y ++H + +
Sbjct: 428 IPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNI 484
Query: 281 ENEKSY------FGDLRFKTFPLIHSHQSSTSSN------------QSHIFNEHCDGAVK 322
E+ + F D RF + H + +S + +I +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKY 541
Query: 323 SSILSNMLVINDFLSAEEEQSLLKE---INQFIKRQRYEYDHWDDAIHGFRETER 374
+++ +L DFL EE + + + + E +++A ++ +R
Sbjct: 542 ERLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEA---HKQVQR 589
Score = 38.3 bits (88), Expect = 0.006
Identities = 49/362 (13%), Positives = 111/362 (30%), Gaps = 98/362 (27%)
Query: 171 HGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGN 230
H + E + + I++ ++ AF V V D+ + K +D + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFED-AF---VDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 231 TIAGLSLL--------SDSVMKLVDEKTKT------QEILVLLKQRSLYVMKDDARYKFT 276
++G L + V K V+E + I +Q S+ Y
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM----MTRMYIEQ 115
Query: 277 HEVLENEKSYFGDL---RFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVIN 333
+ L N+ F R + + + + ++ + G+ K+ + ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTW-----VALD 169
Query: 334 DFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIH-GFRETERSKWNEENTKIIARVQNL- 391
LS + + + +I W ++ + + ++ +Q L
Sbjct: 170 VCLSYKVQCKMDFKI------------FW---LNLKNCNSPET--------VLEMLQKLL 206
Query: 392 -AFPPNVT--------PIQYVHVLDLEQKGYI--KAHVDSVRFCGNTIAGLSLLSD---- 436
PN T +H + E + + K + + L +L +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----------LLVLLNVQNA 256
Query: 437 SVMKLVDEKTKTQEILVLLKQRSL----------YVMKDDARYKFTHEVLENESL--DCL 484
+ K IL+ + + + ++ D T + E +SL L
Sbjct: 257 KAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYL 311
Query: 485 NL 486
+
Sbjct: 312 DC 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 60/411 (14%), Positives = 125/411 (30%), Gaps = 137/411 (33%)
Query: 24 HGEAK-SHSAPSSP----TQLRKK-DISIPLQSNKYSPLESPDLSPPLNINMDLMSD-LQ 76
HG + P++ +QL+++ + +P + ++ + P +P +L+ L
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPA-----ELVGKFLG 66
Query: 77 HVIFK-DCSPTS----VQKTMLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILS 131
+V + S V L + +L N H ++++
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGNDIHALAAKLLQENDTTLVK 118
Query: 132 NMLVINDFLSA---------EEEQSLLKE------------------INQFIK--RQRYE 162
+I ++++A ++ S L + + + R Y+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 163 -YDHW-DDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQ------ 214
Y D I ET + L + L++ +
Sbjct: 179 TYHVLVGDLIKFSAET---------------LSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 215 ----KGYIK--------------AH-VDSVRFCGNT-------IAGLSLLSDS-VMKLVD 247
K Y+ AH V + + G T + G + S V +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 248 EKTKTQEILVLLKQRSLYVMKDDA-RYKFTHEVLENEKSYFGDLRF-KTFPLIHSHQSST 305
+T + E S +V A F + G +R + +P +S
Sbjct: 284 AETDSWE--------SFFVSVRKAITVLF----------FIG-VRCYEAYP-----NTSL 319
Query: 306 SSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQR 356
+ E+ +G S ML I++ L+ E+ Q + + N + +
Sbjct: 320 PPSILEDSLENNEGV-----PSPMLSISN-LTQEQVQDYVNKTNSHLPAGK 364
Score = 41.6 bits (97), Expect = 7e-04
Identities = 44/233 (18%), Positives = 73/233 (31%), Gaps = 92/233 (39%)
Query: 262 RSLY----VMK---DDA------RYKF--THEVLENEKS---YFGDLRFKTFPLIHSHQS 303
LY + + A Y F V+ N + +FG + K I + S
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR---IRENYS 1689
Query: 304 STSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWD 363
+ IF DG +K+ + + KEIN+ Y +
Sbjct: 1690 A------MIFETIVDGKLKT------------------EKIFKEINE--HSTSYTFRSEK 1723
Query: 364 DAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRF 423
+ T+ T Q P +T ++ DL+ KG I A D+
Sbjct: 1724 GLLS---ATQ-------FT------Q-----PALTLMEKAAFEDLKSKGLIPA--DAT-- 1758
Query: 424 CGNTIAGLSL--------LSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDAR 468
AG SL L+D VM + ++ ++ R + + R
Sbjct: 1759 ----FAGHSLGEYAALASLAD-VMSIES-------LVEVVFYRGMTMQVAVPR 1799
Score = 40.4 bits (94), Expect = 0.001
Identities = 42/230 (18%), Positives = 72/230 (31%), Gaps = 76/230 (33%)
Query: 15 LRSKLKED--KHGEAKSHSAPSSPTQLRKKDISIP-LQS-----NKYSPLE--------- 57
L + ED ++ E PS P L +++ +Q N + P
Sbjct: 319 LPPSILEDSLENNEG----VPS-P-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 58 SPD---LS-PPLNINMDLMSDLQHVIFKDCSPTSVQKTMLQA-IP-SLPPPAVPAKFLPS 111
+S PP L L + K +P+ + Q+ IP S +FLP
Sbjct: 373 GAKNLVVSGPPQ----SLYG-LNLTLRKAKAPSGLD----QSRIPFSERKLKFSNRFLP- 422
Query: 112 NQSHI---FNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDD 168
+ F H S +L A + IN+ + + ++ D
Sbjct: 423 ----VASPF--H------SHLLV---------PASDL------INKDLVKNNVSFNAKDI 455
Query: 169 AIHGFRETERSK-WNEENTKIIARV--QNLAFP---PNVTPIQYVHVLDL 212
I + +T + I R+ + P T + H+LD
Sbjct: 456 QIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 39.3 bits (91), Expect = 0.003
Identities = 62/374 (16%), Positives = 114/374 (30%), Gaps = 149/374 (39%)
Query: 116 IFNEHCDGAVKS----SIL----SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWD 167
++N D K SIL +N + + E+ + + R+ Y ++
Sbjct: 1645 VWNR-ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI---------RENYSAMIFE 1694
Query: 168 DAIHGFRETER--SKWNEENTKIIARVQN--LAFPPNVTP----IQYVHVLDLEQKGYIK 219
+ G +TE+ + NE +T R + L+ P ++ DL+ KG I
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 220 AHVDSVRFCGNTIAGLSL--------LSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDA 271
A D+ AG SL L+D VM + ++ ++ R + +
Sbjct: 1755 A--DAT------FAGHSLGEYAALASLAD-VMSIES-------LVEVVFYRGMTMQVAVP 1798
Query: 272 RYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLV 331
R E +S +G + A+ N
Sbjct: 1799 R-------DELGRSNYGMI-----------------------------AI------NPGR 1816
Query: 332 INDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNL 391
+ S E Q +++ + +R+ W E I N
Sbjct: 1817 VAASFSQEALQYVVERVG-----------------------KRTGWLVE----IV---NY 1846
Query: 392 AFPPNVTPIQYVHVLDLEQKGYIKAHVDSVRFCGNTIAGLSLLSDSVMKLVDEKTKTQEI 451
NV QYV + L +++ V+ + K + +I
Sbjct: 1847 ----NVENQQYV--------------------AAGDLRALDTVTN-VLNFI--KLQKIDI 1879
Query: 452 LVLLKQRSLYVMKD 465
+ L K SL ++
Sbjct: 1880 IELQKSLSLEEVEG 1893
Score = 32.7 bits (74), Expect = 0.34
Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 69/194 (35%)
Query: 242 VMKLVDEKTKTQ--EIL-VLLKQ-RSLY-------------VMKDDARYKFTHEVLENEK 284
V LV+ Q ++L + L + + Y + ++D T E++ K
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---K 124
Query: 285 SYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLV------INDFLSA 338
+Y P S+ +F +G + + + +D+
Sbjct: 125 NYITARIMAKRPFDKKSNSA-------LFRAVGEGNAQL-----VAIFGGQGNTDDYF-- 170
Query: 339 EEEQSLLKEINQFIKRQRYE-YDHW-DDAIHGFRETERSKWNEENTKIIARVQNLAFPPN 396
EE L+++ Y+ Y D I ET + L
Sbjct: 171 -EE---LRDL--------YQTYHVLVGDLIKFSAET---------------LSELIRTTL 203
Query: 397 VTPIQYVHVLDLEQ 410
+ L++ +
Sbjct: 204 DAEKVFTQGLNILE 217
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA
repair, demethylase, beta jellyroll; HET: AKG; 1.50A
{Homo sapiens} SCOP: b.82.2.10
Length = 238
Score = 43.3 bits (101), Expect = 7e-05
Identities = 26/209 (12%), Positives = 57/209 (27%), Gaps = 34/209 (16%)
Query: 97 PSLPPPAVPAKFLPSNQS---HIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEIN 153
S P + + + V + F+ +E +L+++
Sbjct: 11 SSGLVPRGSHMRVIDREGVYEISLSPTGVSRV--------CLYPGFVDVKEADWILEQLC 62
Query: 154 QFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLE 213
Q + ++ D R T I N + P + ++ +
Sbjct: 63 QDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTG 122
Query: 214 Q-------------KGYIKAHVDSVRF--CGNTIAGLSLLSDSVMKL--------VDEKT 250
K + H D IA LS + ++ + T
Sbjct: 123 HTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYT 182
Query: 251 KTQEILVLLKQRSLYVMKDDARYKFTHEV 279
+ + + L +L +M+ + + H V
Sbjct: 183 YVERVKIPLDHGTLLIMEGATQADWQHRV 211
Score = 42.2 bits (98), Expect = 2e-04
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 23/172 (13%)
Query: 327 SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIA 386
S + + F+ +E +L+++ Q + ++ D R T I
Sbjct: 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRIT 99
Query: 387 RVQNLAFPPNVTPIQYVHVLDLEQ-------------KGYIKAHVDSVRF--CGNTIAGL 431
N + P + ++ + K + H D IA L
Sbjct: 100 MEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASL 159
Query: 432 SLLSDSVMKL--------VDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEV 475
S + ++ + T + + + L +L +M+ + + H V
Sbjct: 160 SFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRV 211
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA
damage, DNA repair, iron, M binding, oxidoreductase;
HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A*
2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A*
3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A*
3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Length = 211
Score = 40.8 bits (95), Expect = 4e-04
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 5/121 (4%)
Query: 160 RYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIK 219
R Y + I + + R A P+ P + +
Sbjct: 63 RQGYLY--SPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDA-CLINRYAPGAKLS 119
Query: 220 AHVDSVRFC-GNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHE 278
H D I +SL ++ + K +LL+ + V ++R + H
Sbjct: 120 LHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFY-HG 178
Query: 279 V 279
+
Sbjct: 179 I 179
Score = 40.8 bits (95), Expect = 4e-04
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 5/121 (4%)
Query: 356 RYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIK 415
R Y + I + + R A P+ P + +
Sbjct: 63 RQGYLY--SPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDA-CLINRYAPGAKLS 119
Query: 416 AHVDSVRFC-GNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHE 474
H D I +SL ++ + K +LL+ + V ++R + H
Sbjct: 120 LHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFY-HG 178
Query: 475 V 475
+
Sbjct: 179 I 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.005
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 38 QLRKKDISIPLQSN-KYSPLESPDLSPPLNIN 68
L+K LQ++ K L + D +P L I
Sbjct: 21 ALKK------LQASLK---LYADDSAPALAIK 43
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA
complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma,
oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo
sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A*
3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A*
3btx_A* 3bu0_A* 3btz_A*
Length = 204
Score = 32.0 bits (72), Expect = 0.30
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 215 KGYIKAHVDSVR--FCGNTIAGLSLLSDSVMKLVDEKTKTQE-------ILVLLKQRSLY 265
+I H D R G+ IA +S + + ++ + + + L SL
Sbjct: 111 SDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLL 170
Query: 266 VMKDDARYKFTHEV 279
+M + H +
Sbjct: 171 MMNHPTNTHWYHSL 184
Score = 32.0 bits (72), Expect = 0.30
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 411 KGYIKAHVDSVR--FCGNTIAGLSLLSDSVMKLVDEKTKTQE-------ILVLLKQRSLY 461
+I H D R G+ IA +S + + ++ + + + L SL
Sbjct: 111 SDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVVRLPLAHGSLL 170
Query: 462 VMKDDARYKFTHEV 475
+M + H +
Sbjct: 171 MMNHPTNTHWYHSL 184
>2htd_A Predicted flavin-nucleotide-binding protein from family
structurally related to pyridoxine...; putative
pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A
{Lactobacillus delbrueckii subsp}
Length = 140
Score = 29.0 bits (65), Expect = 1.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 157 KRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAF--------PPNVTPIQYVH 208
+ + + H + G ++ +K EE + NL + P V P +
Sbjct: 4 DKIHHHHHHENLYFQGMKKLNTNKLTEEQVNLFKN--NLVYLATVDADGNPQVGPKGSMT 61
Query: 209 VLD 211
VLD
Sbjct: 62 VLD 64
Score = 29.0 bits (65), Expect = 1.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 353 KRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAF--------PPNVTPIQYVH 404
+ + + H + G ++ +K EE + NL + P V P +
Sbjct: 4 DKIHHHHHHENLYFQGMKKLNTNKLTEEQVNLFKN--NLVYLATVDADGNPQVGPKGSMT 61
Query: 405 VLD 407
VLD
Sbjct: 62 VLD 64
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 30.2 bits (67), Expect = 2.0
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 157 KRQRYEYDHWDDA--IHGFRETERSKWNEENTKII--ARVQNLAFPPNVTPIQYVHVLDL 212
R+ + W A + + + EE + + + + I+ +H+ DL
Sbjct: 244 TRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDL 303
Query: 213 EQKGYIKAHVDSVRFCGNTIAGLSLLSDS 241
+ D + LL +S
Sbjct: 304 ISGDRFEIKADVYVLTAGAVHNTQLLVNS 332
Score = 30.2 bits (67), Expect = 2.0
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Query: 353 KRQRYEYDHWDDA--IHGFRETERSKWNEENTKII--ARVQNLAFPPNVTPIQYVHVLDL 408
R+ + W A + + + EE + + + + I+ +H+ DL
Sbjct: 244 TRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDL 303
Query: 409 EQKGYIKAHVDSVRFCGNTIAGLSLLSDS 437
+ D + LL +S
Sbjct: 304 ISGDRFEIKADVYVLTAGAVHNTQLLVNS 332
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural
genomics, JOI for structural genomics, JCSG; 2.26A
{Shewanella baltica OS155}
Length = 243
Score = 29.5 bits (66), Expect = 2.0
Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 111 SNQSHIFNEHCDGAVKSSILSNMLV-INDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDA 169
S++ H + H ++ ML+ I + S +E + + + + +R+ D +
Sbjct: 3 SDKIHHHHHH-----ENLYFQGMLIEIPNVFSKQE----VSHLREQLDARRWI-DGNQTS 52
Query: 170 IHGFRETERSKWNEENTKIIARVQNL--------------AFPPNVTPIQYVHVLDLEQK 215
+R++ +++ + + A P P + +
Sbjct: 53 GAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRY---QGG 109
Query: 216 GYIKAHVDS 224
H+D+
Sbjct: 110 ETFGYHIDN 118
Score = 29.5 bits (66), Expect = 2.0
Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 307 SNQSHIFNEHCDGAVKSSILSNMLV-INDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDA 365
S++ H + H ++ ML+ I + S +E + + + + +R+ D +
Sbjct: 3 SDKIHHHHHH-----ENLYFQGMLIEIPNVFSKQE----VSHLREQLDARRWI-DGNQTS 52
Query: 366 IHGFRETERSKWNEENTKIIARVQNL--------------AFPPNVTPIQYVHVLDLEQK 411
+R++ +++ + + A P P + +
Sbjct: 53 GAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRY---QGG 109
Query: 412 GYIKAHVDS 420
H+D+
Sbjct: 110 ETFGYHIDN 118
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 29.4 bits (67), Expect = 2.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 270 DARYKFTHEVLENEKSYFGDLRFKT 294
D R +V +++FG+ F T
Sbjct: 180 DGRTLLAQQVEAQLRAHFGEKVFWT 204
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A
{Virgibacillus salexigens}
Length = 310
Score = 29.4 bits (66), Expect = 2.7
Identities = 8/59 (13%), Positives = 16/59 (27%)
Query: 134 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARV 192
L I +F S +E + K I + + + ++ V
Sbjct: 49 LQIKNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREPESNDIRSIFHVHQDDNYFQDV 107
Score = 29.4 bits (66), Expect = 2.7
Identities = 8/59 (13%), Positives = 16/59 (27%)
Query: 330 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARV 388
L I +F S +E + K I + + + ++ V
Sbjct: 49 LQIKNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREPESNDIRSIFHVHQDDNYFQDV 107
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural
genomics/proteomics in RSGI, transferase; 1.80A
{Pyrococcus horikoshii}
Length = 172
Score = 28.7 bits (65), Expect = 2.9
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 178 RSKWNEENTKIIARVQN--------LAFPPNVTPIQYVHVLDLEQ 214
+ +EE I+ +QN + + I + LE
Sbjct: 45 KHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEG 89
Score = 28.7 bits (65), Expect = 2.9
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 374 RSKWNEENTKIIARVQN--------LAFPPNVTPIQYVHVLDLEQ 410
+ +EE I+ +QN + + I + LE
Sbjct: 45 KHYVDEEMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEG 89
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Query: 131 SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKW 181
+ + ++ EEE F+KR + ++D W I RE+ W
Sbjct: 41 AQLARFDN----EEEL-------IFLKRFKGDFDSW---IGLHRESSEHPW 77
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Query: 327 SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKW 377
+ + ++ EEE F+KR + ++D W I RE+ W
Sbjct: 41 AQLARFDN----EEEL-------IFLKRFKGDFDSW---IGLHRESSEHPW 77
>2r4g_A Telomerase reverse transcriptase; telomeres, chromosomal protein,
DNA-binding, nucleotidyltransferase, nucleus; 1.71A
{Tetrahymena thermophila}
Length = 267
Score = 28.6 bits (63), Expect = 4.4
Identities = 20/172 (11%), Positives = 53/172 (30%), Gaps = 7/172 (4%)
Query: 10 FVYKGLRSKLKEDKHGEAKSHSAPSSPTQLRKKDISIPLQSNKYSPLESPDLSPPLNINM 69
F +K ++ KL+ + + T ++K + N E +
Sbjct: 4 FQFKVIQEKLQGRQFINSDKIKPDHPQTIIKKTLLKEYQSKNFSCQEERDLFLEFTEKIV 63
Query: 70 DLMSDLQHV-IFKDCSPTSVQKTMLQAIPS---LPPPAVPAKFLPSNQSHIFNEHCDGAV 125
++ + K L++ + + + +++
Sbjct: 64 QNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQQSCENLFNSLYDTEISYKQ 123
Query: 126 KSSIL---SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFR 174
++ L V N L + + L+++ +F++ +R+E D I
Sbjct: 124 ITNFLRQIIQNCVPNQLLGKKNFKVFLEKLYEFVQMKRFENQKVLDYICFMD 175
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 28.7 bits (65), Expect = 4.7
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 125 VKSS----ILSNMLVINDF-LSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERS 179
KSS + N+ V D+ + + + + + + + HGF +T
Sbjct: 271 PKSSSGARLKENLDVF-DWSIPEDL----FTKFSNIPQEKFCRATEFAHETHGFYKTIEE 325
Query: 180 KWNEE 184
W+ E
Sbjct: 326 LWDGE 330
Score = 28.7 bits (65), Expect = 4.7
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 321 VKSS----ILSNMLVINDF-LSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERS 375
KSS + N+ V D+ + + + + + + + HGF +T
Sbjct: 271 PKSSSGARLKENLDVF-DWSIPEDL----FTKFSNIPQEKFCRATEFAHETHGFYKTIEE 325
Query: 376 KWNEE 380
W+ E
Sbjct: 326 LWDGE 330
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded
beta-helix, structural GENO structural genomics
consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo
sapiens} SCOP: b.82.2.9
Length = 308
Score = 28.7 bits (64), Expect = 4.7
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 134 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKI 188
LVI + + + Q E + +++ ++E + + TK+
Sbjct: 37 LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKV 91
Score = 28.7 bits (64), Expect = 4.7
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 330 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKI 384
LVI + + + Q E + +++ ++E + + TK+
Sbjct: 37 LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKV 91
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 27.3 bits (61), Expect = 5.2
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 131 SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKW 181
S + ++N E+ +F++ ++ I E +W
Sbjct: 35 STLAIVNT----PEKL-------KFLQDITDAEKYF---IGLIYHREEKRW 71
Score = 27.3 bits (61), Expect = 5.2
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 327 SNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKW 377
S + ++N E+ +F++ ++ I E +W
Sbjct: 35 STLAIVNT----PEKL-------KFLQDITDAEKYF---IGLIYHREEKRW 71
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 28.4 bits (62), Expect = 5.7
Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 114 SHIFNEHCDGAVKSSILSN----MLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHW--- 166
I+++ +K I + I++ ++ + +++ KEI I + E D +
Sbjct: 13 PKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVN 72
Query: 167 ---DDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQK-------- 215
D A + + K+ + + + + L +
Sbjct: 73 QSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMSINTYT 132
Query: 216 --GYIKAHVDSV 225
++ H D +
Sbjct: 133 KGCHLLTHDDVI 144
Score = 28.4 bits (62), Expect = 5.7
Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 310 SHIFNEHCDGAVKSSILSN----MLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHW--- 362
I+++ +K I + I++ ++ + +++ KEI I + E D +
Sbjct: 13 PKIWDKTFQDGLKKEIEDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTKKETDIYRVN 72
Query: 363 ---DDAIHGFRETERSKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQK-------- 411
D A + + K+ + + + + L +
Sbjct: 73 QSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMSINTYT 132
Query: 412 --GYIKAHVDSV 421
++ H D +
Sbjct: 133 KGCHLLTHDDVI 144
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural
GE structural genomics consortium, SGC, oxidoreductase;
1.90A {Homo sapiens} PDB: 3obz_A*
Length = 291
Score = 28.1 bits (62), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 134 LVINDFLSAEEEQSLLKEINQFIKR 158
LV+ FLSAEE ++ + I + +
Sbjct: 18 LVLEGFLSAEECVAMQQRIGEIVAE 42
Score = 28.1 bits (62), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 330 LVINDFLSAEEEQSLLKEINQFIKR 354
LV+ FLSAEE ++ + I + +
Sbjct: 18 LVLEGFLSAEECVAMQQRIGEIVAE 42
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas
reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Length = 224
Score = 27.5 bits (61), Expect = 7.6
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 133 MLVINDFLSAEEEQSLLKEINQFIKRQR-YEYDHWDDAIHGFRETERSKW-----NEENT 186
++ +FLS EE ++++ + + + + R T W + +
Sbjct: 22 AFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIR-TSTGTWFAKGEDSVIS 80
Query: 187 KIIARVQNLAFPP--NVTPIQYVHVLDLEQKGYIKAHVDS 224
KI RV + P N +Q +H + H D
Sbjct: 81 KIEKRVAQVTMIPLENHEGLQVLH---YHDGQKYEPHYDY 117
Score = 27.5 bits (61), Expect = 7.6
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 329 MLVINDFLSAEEEQSLLKEINQFIKRQR-YEYDHWDDAIHGFRETERSKW-----NEENT 382
++ +FLS EE ++++ + + + + R T W + +
Sbjct: 22 AFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIR-TSTGTWFAKGEDSVIS 80
Query: 383 KIIARVQNLAFPP--NVTPIQYVHVLDLEQKGYIKAHVDS 420
KI RV + P N +Q +H + H D
Sbjct: 81 KIEKRVAQVTMIPLENHEGLQVLH---YHDGQKYEPHYDY 117
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 28.0 bits (63), Expect = 7.8
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 181 WNEENTKIIARVQN-LAFPPNVTPI----QYVHVLDLEQKGYIKAHVDSVRFCGNTIAGL 235
W + +++ ++ + PN T Q +H D + + +VD VR+ G+ I
Sbjct: 188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK 247
Query: 236 SLLSDSVMKLVDEKTKTQEILVL 258
S ++ + +I +
Sbjct: 248 S--CENAIVCWKPGKMEDDIDKI 268
Score = 28.0 bits (63), Expect = 7.8
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 377 WNEENTKIIARVQN-LAFPPNVTPI----QYVHVLDLEQKGYIKAHVDSVRFCGNTIAGL 431
W + +++ ++ + PN T Q +H D + + +VD VR+ G+ I
Sbjct: 188 WRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK 247
Query: 432 SLLSDSVMKLVDEKTKTQEILVL 454
S ++ + +I +
Sbjct: 248 S--CENAIVCWKPGKMEDDIDKI 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,138,192
Number of extensions: 419995
Number of successful extensions: 937
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 63
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)