RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy941
(487 letters)
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 210
Score = 51.0 bits (121), Expect = 5e-08
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 130 LSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKII 189
+S + + F+ +E +L+++ Q + ++ D R T I
Sbjct: 18 VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77
Query: 190 ARVQNLAFPP-------------NVTPIQYVHVLDLEQKGYIKAHVD--SVRFCGNTIAG 234
N + P T + L +K + H D IA
Sbjct: 78 TMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIAS 137
Query: 235 LSLLSDSVM--------KLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEV 279
LS + + + T + + + L +L +M+ + + H V
Sbjct: 138 LSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRV 190
Score = 51.0 bits (121), Expect = 5e-08
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 326 LSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKII 385
+S + + F+ +E +L+++ Q + ++ D R T I
Sbjct: 18 VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77
Query: 386 ARVQNLAFPP-------------NVTPIQYVHVLDLEQKGYIKAHVD--SVRFCGNTIAG 430
N + P T + L +K + H D IA
Sbjct: 78 TMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIAS 137
Query: 431 LSLLSDSVM--------KLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEV 475
LS + + + T + + + L +L +M+ + + H V
Sbjct: 138 LSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRV 190
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
{Escherichia coli [TaxId: 562]}
Length = 200
Score = 44.7 bits (105), Expect = 6e-06
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 30/175 (17%)
Query: 133 MLVINDFLSAEEEQSLLKEINQFIK-----RQRYEYDH-------------WDDAIHGFR 174
+++ F EQ L+++IN + + W G+
Sbjct: 5 AVILRRFAFNAAEQ-LIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYL 63
Query: 175 ETER--------SKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVD-SV 225
+ + + R A P+ P + + H D
Sbjct: 64 YSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQP-DACLINRYAPGAKLSLHQDKDE 122
Query: 226 RFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVL 280
I +SL ++ + K +LL+ + V ++R + H +
Sbjct: 123 PDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFY-HGIQ 176
Score = 44.7 bits (105), Expect = 6e-06
Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 30/175 (17%)
Query: 329 MLVINDFLSAEEEQSLLKEINQFIK-----RQRYEYDH-------------WDDAIHGFR 370
+++ F EQ L+++IN + + W G+
Sbjct: 5 AVILRRFAFNAAEQ-LIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYL 63
Query: 371 ETER--------SKWNEENTKIIARVQNLAFPPNVTPIQYVHVLDLEQKGYIKAHVD-SV 421
+ + + R A P+ P + + H D
Sbjct: 64 YSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQP-DACLINRYAPGAKLSLHQDKDE 122
Query: 422 RFCGNTIAGLSLLSDSVMKLVDEKTKTQEILVLLKQRSLYVMKDDARYKFTHEVL 476
I +SL ++ + K +LL+ + V ++R + H +
Sbjct: 123 PDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFY-HGIQ 176
>d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13
[TaxId: 306]}
Length = 233
Score = 29.2 bits (64), Expect = 0.94
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 4/129 (3%)
Query: 265 YVMKDDARYKFTHEVLENEKSYFGDLRFKTFPLIHSHQSSTSSNQSHIFNEHCDGAVKSS 324
+ + +V G L F + ++ + VK
Sbjct: 103 AIRYARHQPYSNGKVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEVKHP 162
Query: 325 ILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKI 384
L +M + F+ A Q + + + +++A H F T S +
Sbjct: 163 ALFHMGGQDHFVPAPSRQLITEGFG---ANPLLQVHWYEEAGHSFARTSSSGYVASAAA- 218
Query: 385 IARVQNLAF 393
+A + L F
Sbjct: 219 LANERTLDF 227
Score = 27.7 bits (60), Expect = 2.6
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 157 KRQRYEYDHWDDAIHGFRETERSKWNEENTKIIARVQNLAF 197
+ +++A H F T S + +A + L F
Sbjct: 188 ANPLLQVHWYEEAGHSFARTSSSGYVASAAA-LANERTLDF 227
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator
SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId:
1313]}
Length = 217
Score = 28.6 bits (63), Expect = 1.4
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 92 MLQAIPSLPPPAVPAKFLPSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKE 151
+LP + ++++ ++ F E V +N E+ + L++
Sbjct: 149 WGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVD--------ELNRVGKNREDLTELQQ 200
Query: 152 INQFIKRQRYEYDHWDDA 169
+ + E +D
Sbjct: 201 R--WNQAVALELAFFDIG 216
Score = 28.2 bits (62), Expect = 2.1
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 331 VINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDA 365
+N E+ + L++ + + E +D
Sbjct: 184 ELNRVGKNREDLTELQQR--WNQAVALELAFFDIG 216
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 27.3 bits (60), Expect = 2.3
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 225 VRFCGNT----IAGLSLLSDSVMKLVDEKTKTQEILVLLK--QRSLYVMKDDARYKFTHE 278
V F + + G +S +V + + +V K + + + + + F
Sbjct: 5 VLFINSVEMESLTGPQAISKAVAETLVADPTPTATIVHFKVSAQGITLTDNQRKLFFRRH 64
Query: 279 VLENEKSYFG----DLRF---------KTFPLIHSHQSSTSSNQSHIFNEH 316
N ++ + ++ K F + Q ST+ N H+F E
Sbjct: 65 YPLNTVTFCDLDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLFAEL 115
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus
subtilis [TaxId: 1423]}
Length = 225
Score = 27.8 bits (61), Expect = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 143 EEEQSLLKEINQFIKRQRYEYDHWDDA 169
EE ++ +KE F+ YEY W A
Sbjct: 187 EEVRAKMKEN--FVISSYYEYQFWGMA 211
Score = 27.8 bits (61), Expect = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 339 EEEQSLLKEINQFIKRQRYEYDHWDDA 365
EE ++ +KE F+ YEY W A
Sbjct: 187 EEVRAKMKEN--FVISSYYEYQFWGMA 211
>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 206
Score = 27.9 bits (61), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 143 EEEQSLLKEINQFIKRQRYEYDHWDDA 169
E E+ +E+ F + ++E WD A
Sbjct: 181 EFEKERAREV--FKEVSKFELIFWDIA 205
Score = 27.9 bits (61), Expect = 2.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 339 EEEQSLLKEINQFIKRQRYEYDHWDDA 365
E E+ +E+ F + ++E WD A
Sbjct: 181 EFEKERAREV--FKEVSKFELIFWDIA 205
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 27.8 bits (61), Expect = 2.7
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 299 HSHQSSTSSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYE 358
Q+ S ++ + S + V L A++ + L + F + +
Sbjct: 228 AIAQAKLSKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKSKFG-FNPDKSFV 286
Query: 359 -----YDHWDDAIHGFRETERSKWNE 379
YDH+ I +KWN+
Sbjct: 287 VPQEVYDHYQKTILKPGVEANNKWNK 312
Score = 27.8 bits (61), Expect = 2.9
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 110 PSNQSHIFNEHCDGAVKSSILSNMLVINDFLSAEEEQSLLKEINQFIKRQRYE-----YD 164
++ + S + V L A++ + L + F + + YD
Sbjct: 235 SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKSKFG-FNPDKSFVVPQEVYD 293
Query: 165 HWDDAIHGFRETERSKWNE 183
H+ I +KWN+
Sbjct: 294 HYQKTILKPGVEANNKWNK 312
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 27.5 bits (60), Expect = 3.0
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 140 LSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEEN 185
L+ EEE L +++ + ++ + + RE R+K
Sbjct: 17 LTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTA 62
Score = 27.5 bits (60), Expect = 3.0
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 336 LSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEEN 381
L+ EEE L +++ + ++ + + RE R+K
Sbjct: 17 LTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTA 62
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 27.1 bits (58), Expect = 5.0
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 134 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKI 188
LVI + + + Q E + +++ ++E + + TK+
Sbjct: 25 LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKV 79
Score = 27.1 bits (58), Expect = 5.0
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 330 LVINDFLSAEEEQSLLKEINQFIKRQRYEYDHWDDAIHGFRETERSKWNEENTKI 384
LVI + + + Q E + +++ ++E + + TK+
Sbjct: 25 LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKV 79
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator
PH1161 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 215
Score = 25.9 bits (56), Expect = 9.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 142 AEEEQSLLKEINQFIKRQRYEYDHWDDA 169
L+ I FI ++E W+ A
Sbjct: 186 GHSGYDRLRRI--FITGSKFELAFWEMA 211
Score = 25.9 bits (56), Expect = 9.2
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 338 AEEEQSLLKEINQFIKRQRYEYDHWDDA 365
L+ I FI ++E W+ A
Sbjct: 186 GHSGYDRLRRI--FITGSKFELAFWEMA 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,748,343
Number of extensions: 80524
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 33
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)