BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9410
(736 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 324/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 367
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 368 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 419
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 420 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 478
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 479 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 521
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 324/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 78 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 134
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 135 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 194
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 195 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 249
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 250 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 310 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 366
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 367 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 418
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 419 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 477
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 478 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 520
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 324/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 367
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 368 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 419
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 420 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 478
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 479 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 521
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 324/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 11 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 70
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 71 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 127
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 128 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 187
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 188 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 242
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 243 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 302
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 303 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 359
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 360 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 411
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 412 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 470
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 471 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 513
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/525 (47%), Positives = 323/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+ RG
Sbjct: 78 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYRG 134
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 135 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 194
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 195 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 249
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 250 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 310 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 366
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 367 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 418
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 419 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 477
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 478 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 520
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 470 bits (1209), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/525 (47%), Positives = 324/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 78 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 134
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 135 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 194
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQ++R Y+W+L+ N
Sbjct: 195 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQNNRRLYDWVLD-----NITI 249
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 250 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 310 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 366
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 367 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 418
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 419 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 477
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 478 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 520
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/525 (47%), Positives = 323/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 18 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 77
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 78 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 134
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 135 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 194
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQ +R Y+W+L+ N
Sbjct: 195 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQGNRRLYDWVLD-----NITI 249
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 250 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 309
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 310 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 366
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 367 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 418
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 419 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 477
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 478 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 520
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/525 (47%), Positives = 323/525 (61%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VESIKNDVEWLGFHW---SGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+ TLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLRTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ S V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ E+ T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP-- 367
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 368 --NHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 419
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 420 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 478
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + DF +INP S + + EP+LK K QFE+
Sbjct: 479 VPNPGAAD--DFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFER 521
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/566 (39%), Positives = 317/566 (56%), Gaps = 65/566 (11%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K P+V+TRF P+P+GY H+GH + ++F A +Y G NLR DDTNP +EY
Sbjct: 58 DLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEY 117
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI +KWL +W + YYASDYFD Y AE LI GDAYV+S + EE+ RG
Sbjct: 118 VDSIADDLKWLGLDW---GEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRG 174
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
N PG SP+ +R E+L+L RRM++GEF DG HVLR KI++ + N+ +RDP++YRI
Sbjct: 175 NATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIV 234
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+ H+RT++ W IYP YD+ HP+ DAIE +THS+C+LEF D+R Y+W++ K+ NF
Sbjct: 235 NKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKL---NF-- 289
Query: 250 RPFPKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P P QYEF R L +TITS V GWDDPRMPTL RR G TPE+++ F
Sbjct: 290 DPRPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAF 349
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEI------- 362
+IGVS+++ ++I + E A+RDDL+ +APR+MAVL+P+K+ ++N LD ++
Sbjct: 350 AAQIGVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTN-LDGEKTLSLPYWP 408
Query: 363 --------ECTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKN 414
+ + +E +R P+++ L+IERDDF P K + RL P
Sbjct: 409 HDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTP----- 463
Query: 415 SGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSH 474
G VRLR ++ F ++ +V + T L + K G IHW+S
Sbjct: 464 -GGTVRLRGAGIIRADDFGTDEAGQVTHIRA---------TLLGEDAKAAGVIHWVSAER 513
Query: 475 ALSIEARLYDRLFIDPYPNIVN--------------------------NKDFKLLINPNS 508
AL E RLYDRLF P+P N ++ F + P+S
Sbjct: 514 ALPAEFRLYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDS 573
Query: 509 KKVISAYLEPNLKLIFPKKHAQFEQN 534
+V+ Y+EP++ QFE+
Sbjct: 574 LRVLRGYVEPSVAGDPADTRYQFERQ 599
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 166/346 (47%), Gaps = 30/346 (8%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+V+ RFAP P+G LHIGHA++ +N E A KY+G LR +DT+P + + E + I +
Sbjct: 96 EVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADL 155
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEI--YINRGNL-HEP 134
+WL WD+ SD + Y+ E LI G AYV + EE NRG H
Sbjct: 156 EWLGVEWDET----VIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACH-- 209
Query: 135 GRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHY 194
R+ F E+L +R M E K+G+ V+RVK ++ N +RD + RI H
Sbjct: 210 CRSLGF-----RENLQRWREMF--EMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHP 262
Query: 195 RTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPF-- 252
RT + +YPM +++ + D + +TH L +DH L +K ++ R
Sbjct: 263 RTGTRYRVYPMMNFSVAVDDHLLGVTH---VLRGKDH-------LANREKQEYLYRHLGW 312
Query: 253 --PKQYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFC 310
P+ + RL + S GWDDPR+ TL + RRG PE+I+
Sbjct: 313 EPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLM 372
Query: 311 KRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNF 356
IGV +DS ++ + + R L+ +A R +P+KL +
Sbjct: 373 VEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVGL 418
>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec
6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351)
From Thermotoga Maritima At 2.5 A Resolution
Length = 481
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 15/215 (6%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RFAP P G+LH+G A++ NF A K G LR +DT+ + +EY + ++++
Sbjct: 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 79 WLNFNWDK-----VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL WD+ Y S+ +I + AE L+ G AY EEI R L
Sbjct: 74 WLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEXREKLLS 133
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNIN--MRDPIIYRIRHV 191
G+ +P Y++ E + R R E K + K K +N ++ ++++ +
Sbjct: 134 EGK-APHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYVLNDVVKGEVVFKTGAI 192
Query: 192 NHY---RTNNNWCIYPMYDYAHPISDAIENITHSI 223
+ R+N P Y++A + D + ITH I
Sbjct: 193 GDFVIXRSNG----LPTYNFACVVDDXLXEITHVI 223
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V R AP P G LHIG A++ N+ A G LR +DT+ + EY +I++ ++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL WD+ Y+ SD D+ + + L+ G AY EE+ R G+
Sbjct: 62 WLGLTWDEGP---YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAP 118
Query: 139 PFYNR 143
+ NR
Sbjct: 119 RYDNR 123
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 44/319 (13%)
Query: 13 GNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNS 72
G+ V TRFAP P G++H+G+ +S + A K G LR +DT+ + ++E V++
Sbjct: 20 GSMTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDA 79
Query: 73 IIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH 132
I++ + WL ++D+ YY D ++ + G Y +TEE+ R
Sbjct: 80 ILEGMAWLGLDYDEGP---YYQMQRMDRYREVLAQMQEKGLVYPXYMSTEELDALRERQR 136
Query: 133 EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVN 192
G + E + +G A VLR + N + + D + R+ N
Sbjct: 137 AAGEKPRYDGTWRPEPGKVLPEPPAGV----APVLRFR-NPLTGTVAWDDAVKGRVEISN 191
Query: 193 H-------YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT 245
R + PMY++ + D ITH I + ++ P IL +
Sbjct: 192 EELDDLVVARPDGT----PMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGE 247
Query: 246 NFIKRPFPK--QYEFSRLNLTHTITSXXXXXXXXXXXIVDGWDDPRMPTLIGMRRRGYTP 303
+ P + +++ H S ++G R GY P
Sbjct: 248 VPVYAHLPTVLNEQGEKMSKRHGAMS-----------------------VMGYRDAGYLP 284
Query: 304 ESIKLFCKRIGVSKSDSWI 322
E++ + R+G S D+ I
Sbjct: 285 EAVLNYLARLGWSHGDAEI 303
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RFAP P G+LH+G A++ N+ A K G LR +DT+ + ++EY I+++++
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAY 115
W +WD+ Y S+ +I + AE L+ AY
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 231
>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|D Chain D, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|C Chain C, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
pdb|3AKZ|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With Trnagln And A
Glutamyl-Amp Analog
Length = 487
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RFAP P G+LH+G A++ N+ A K G LR +DT+ + ++EY I+++++
Sbjct: 25 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 84
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAY 115
W +WD+ Y S+ +I + AE L+ AY
Sbjct: 85 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 126
>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating
Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp
Analog
Length = 488
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RFAP P G+LH+G A++ N+ A K G LR +DT+ + ++EY I+++++
Sbjct: 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAY 115
W +WD+ Y S+ +I + AE L+ AY
Sbjct: 86 WCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RF P P G H+G ++ N+ A G R +DT+ ++++E +++ ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL +WD+ + Y S +I + L+ +G+AY EE+
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH---VA 138
Query: 134 PGRNSPF-YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVN 192
GRN Y+ + R E + LR+ + + N +R P+ + V
Sbjct: 139 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVP 198
Query: 193 HY---RTNNNWCIYPMYDYAHPISDAIENITHSI 223
+ R + + P+Y +P DA+ ITH +
Sbjct: 199 DFALTRASGD----PLYTLVNPCDDALMKITHVL 228
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RF P P G H+G ++ N+ A G R +DT+ ++++E +++ ++
Sbjct: 7 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL +WD+ + Y S +I + L+ +G+AY EE+
Sbjct: 67 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH---VA 123
Query: 134 PGRNSPF-YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVN 192
GRN Y+ + R E + LR+ + + N +R P+ + V
Sbjct: 124 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVP 183
Query: 193 HY---RTNNNWCIYPMYDYAHPISDAIENITHSI 223
+ R + + P+Y +P DA+ ITH +
Sbjct: 184 DFALTRASGD----PLYTLVNPCDDALMKITHVL 213
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 16/214 (7%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V RF P P G H+G ++ N+ A G R +DT+ ++++E +++ ++
Sbjct: 22 VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL +WD+ + Y S +I + L+ +G+AY EE+
Sbjct: 82 WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARH---VA 138
Query: 134 PGRNSPF-YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVN 192
GRN Y+ + R E + LR+ + + N +R P+ + V
Sbjct: 139 AGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVP 198
Query: 193 HY---RTNNNWCIYPMYDYAHPISDAIENITHSI 223
+ R + + P+Y +P DA+ ITH +
Sbjct: 199 DFALTRASGD----PLYTLVNPCDDALMKITHVL 228
>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1G59|C Chain C, Glutamyl-Trna Synthetase Complexed With Trna(Glu).
pdb|1GLN|A Chain A, Architectures Of Class-Defining And Specific Domains Of
Glutamyl-Trna Synthetase
Length = 468
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 30/231 (12%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V+TR AP P G H+G A N+ A + G +R +DT+ + I+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 79 WLNFNWDK-----VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEE---IYINRGN 130
WL ++D+ Y S+ + K AE L+ G AY + EE I +G
Sbjct: 62 WLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 131 LHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKI---NMKSKNINMRDPIIY- 186
RN P P E+ R R GE HV+R+K+ +R ++Y
Sbjct: 122 YDGRARNIP-----PEEAEE---RARRGE----PHVIRLKVPRPGTTEVKDELRGVVVYD 169
Query: 187 --RIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFY 235
I V +++ YP Y A+ + D + +T I E+ P +
Sbjct: 170 NQEIPDVVLLKSDG----YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIH 216
>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp And Glu
pdb|1N75|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Atp.
pdb|1N77|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N77|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Atp.
pdb|1N78|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|1N78|B Chain B, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna
Synthetase Complexed With Trna(Glu) And Glutamol-Amp.
pdb|2CUZ|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With L-Glutamate
pdb|2CV0|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV0|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And L-Glutamate
pdb|2CV1|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV1|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu), Atp, And An Analog Of
L-Glutamate: A Quaternary Complex
pdb|2CV2|A Chain A, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2CV2|B Chain B, Glutamyl-Trna Synthetase From Thermus Thermophilus In
Complex With Trna(Glu) And An Enzyme Inhibitor, Glu-Ams
pdb|2DXI|A Chain A, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
pdb|2DXI|B Chain B, 2.2 A Crystal Structure Of Glutamyl-Trna Synthetase From
Thermus Thermophilus Complexed With Trna(Glu), Atp, And
L- Glutamol
Length = 468
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 30/231 (12%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V+TR AP P G H+G A N+ A + G +R +DT+ + I+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEE---IYINRGN 130
WL ++D+ Y S+ + K AE L+ G AY + EE I +G
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 131 LHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKI---NMKSKNINMRDPIIY- 186
RN P P E+ R R GE HV+R+K+ +R ++Y
Sbjct: 122 YDGRARNIP-----PEEAEE---RARRGE----PHVIRLKVPRPGTTEVKDELRGVVVYD 169
Query: 187 --RIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFY 235
I V +++ YP Y A+ + D + +T I E+ P +
Sbjct: 170 NQEIPDVVLLKSDG----YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIH 216
>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
pdb|4GRI|B Chain B, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Borrelia Burgdorferi Bound To Glutamic Acid And Zinc
Length = 512
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 23/229 (10%)
Query: 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWL 80
R+AP P G HIG ++ N+ A G LR +DT+ + + E N + ++KWL
Sbjct: 27 VRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWL 86
Query: 81 NFNWDK-----VKKRIYYASDYFDILYKIAEYLIISGDAYV---DSQNTEEI-YINRGNL 131
++D+ Y S I + A+YLI SG AY + E I I N
Sbjct: 87 GISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINK 146
Query: 132 HEPGRNSPFYNRLPSESLN-LFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRH 190
PG + N E N L ++++ V+R KI ++ + + D ++ RI
Sbjct: 147 MPPGYDRHCRNLSNEEVENALIKKIKP--------VVRFKIPLEG-DTSFDDILLGRITW 197
Query: 191 VNHYRTNNNWCI----YPMYDYAHPISDAIENITHSICTLEFQDHRPFY 235
N + + + P Y A+ + D + ITH + E+ P +
Sbjct: 198 ANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLH 246
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCI 653
I E KCIGC C Q CP AI G H+I + C C C+ CP N I
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 81
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
Complex Combining Nmr And Soft-Docking
pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
Cytochrome C3 And [fe]-Hydrogenase
Length = 371
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCI 653
I E KCIGC C Q CP AI G H+I + C C C+ CP N I
Sbjct: 4 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 55
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 601 AIIKENKC----IGCTLCIQSCPVDAIIGAA------KHMHTIFSKLCTGCDLCIKKCPV 650
A+I +KC G LC + CPV+ + G A + I CTGC +C+ KCP
Sbjct: 22 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81
Query: 651 NCISMI 656
N IS++
Sbjct: 82 NAISIV 87
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 601 AIIKENKC----IGCTLCIQSCPVDAIIGAA------KHMHTIFSKLCTGCDLCIKKCPV 650
A+I +KC G LC + CPV+ + G A + I CTGC +C+ KCP
Sbjct: 8 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 67
Query: 651 NCISMI 656
N IS++
Sbjct: 68 NAISIV 73
>pdb|1NZJ|A Chain A, Crystal Structure And Activity Studies Of Escherichia
Coli Yadb Orf
pdb|4A91|A Chain A, Crystal Structure Of The Glutamyl-Queuosine Trnaasp
Synthetase From E.Coli Complexed With L-Glutamate
Length = 298
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
Q I RFAP P+G LH G + ++ A G +R +D +P +E +I++ +
Sbjct: 5 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 64
Query: 78 KWLNFNWD 85
+ +WD
Sbjct: 65 EHYGLHWD 72
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem I
Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 606 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ CIGCT C+++CP+D + A + + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 64
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 674
C GC C++ CP++ + M+ C+ G A S + D
Sbjct: 10 CIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTED 46
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 601 AIIKENKCIGCTLCIQSC---PVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCP-VNCISM 655
A+I E CI C C +C AI H+ T+ + CTGC LC+ CP ++CI M
Sbjct: 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIIDCIRM 1004
Query: 656 IEVT 659
+ T
Sbjct: 1005 VSRT 1008
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 601 AIIKENKCIGCTLCIQSC---PVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCP-VNCISM 655
A+I E CI C C +C AI H+ T+ + CTGC LC+ CP ++CI M
Sbjct: 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIIDCIRM 1004
Query: 656 IEVT 659
+ T
Sbjct: 1005 VSRT 1008
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
pdb|3PCQ|C Chain C, Femtosecond X-Ray Protein Nanocrystallography
pdb|4FE1|C Chain C, Improving The Accuracy Of Macromolecular Structure
Refinement At 7 A Resolution
Length = 80
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 606 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ CIGCT C+++CP D + A + + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 64
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 674
C GC C++ CP + + M+ C+ G A S + D
Sbjct: 10 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTED 46
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 594 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
E R C ++K K LCI+ P I I LC GC +C+KKCP + I
Sbjct: 23 QECKRSCPVVKTGK-----LCIEVTPTSKI-------AFISEILCIGCGICVKKCPFDAI 70
Query: 654 SMIEV 658
+I +
Sbjct: 71 QIINL 75
>pdb|1BLU|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Chromatium
Vinosum
Length = 82
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 653
A++ ++CI C +C CP + I + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDVCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCI 58
>pdb|2WSC|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSE|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSF|C Chain C, Improved Model Of Plant Photosystem I
pdb|3LW5|C Chain C, Improved Model Of Plant Photosystem I
Length = 81
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 606 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ CIGCT C+++CP D + A + ++ C GC C CP + +S+
Sbjct: 9 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSV 65
>pdb|2O01|C Chain C, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 80
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 606 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ CIGCT C+++CP D + A + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSV 64
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 601 AIIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658
A + CIG C C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKCASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 659 TPCRTGWDAWSQKKAD 674
P W ++ QK D
Sbjct: 60 VP--EEWKSYIQKNRD 73
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 71 NSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD---SQNTEEIYIN 127
++II IKW+ + + K+ AS+ FD+++ +E L +G AYV+ +N EEI +
Sbjct: 38 SNIIDAIKWV---FGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94
Query: 128 RGNLHEPGRNSPFYNRLP 145
R L G N+ + N P
Sbjct: 95 R-ELKRTGENTYYLNGSP 111
>pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
Model At 1.8 Angstroms Resolution
Length = 55
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 651
A + CI C C CPVDAI + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVDAISQGGSR-YVIDADTCIDCGACAGVCPVD 50
>pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g Variant
From Allochromatium Vinosum
Length = 82
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 653
A++ ++CI C C CP + I + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDGCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCI 58
>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Clostridium Acidurici At 1.84 Angstroms Resolution
pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
Length = 55
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 651
A + CI C C CPV+A I + + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNA-ISSGDDRYVIDADTCIDCGACAGVCPVD 50
>pdb|4DJD|C Chain C, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJD|E Chain E, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJE|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJE|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJF|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
pdb|4DJF|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
Length = 446
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCP 567
LP+ C +CG P C +A +A+ KA+ + CP
Sbjct: 12 LPKKNCGECGTPTCLAFAMNLASGKASLDSCP 43
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCP 567
LP+ C +CG P C +A IA KA + CP
Sbjct: 12 LPKKNCKECGQPTCLAFAMQIAAGKAGLDACP 43
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 584 PIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGC- 641
P+ P Y + ++ KCI C CI +CP D A+++H + CT C
Sbjct: 68 PVCPTGASYQTKDG--LVLVDPKKCIACGACIAACPYD-----ARYLHPAGYVSKCTFCA 120
Query: 642 --------DLCIKKCPVNC 652
C++ CP C
Sbjct: 121 HRLEKGKVPACVETCPTYC 139
>pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
Length = 105
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 614 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKA 673
CI+ CPVD I A+ ++ I C C CPV I + P + W +++Q A
Sbjct: 16 CIEECPVDCIYEGARMLY-IHPDECVDXGACEPVCPVEAIYYEDDVPDQ--WSSYAQANA 72
Query: 674 D 674
D
Sbjct: 73 D 73
>pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
Azotobacter Vinelandii Ferredoxin
Length = 106
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVDA + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 608 CIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW 665
CIG C++ CPV+ I + I + C C C+ CPVN I E P + W
Sbjct: 8 CIGVKDQSCVEVCPVECIYDGGDQFY-IHPEECIDCGACVPACPVNAIYPEEDVPEQ--W 64
Query: 666 DAWSQK 671
++ +K
Sbjct: 65 KSYIEK 70
>pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD I + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|3EUN|A Chain A, Crystal Structure Of The 2[4fe-4s] C57a Ferredoxin Variant
From Allochromatium Vinosum
Length = 82
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 653
A++ ++CI C +C CP + I + I LCT C C++ CPV+ I
Sbjct: 1 ALMITDECINCDVCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAI 58
>pdb|2FGO|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Pseudomonas
Aeruginosa
Length = 82
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 606 NKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCISM 655
+ CI C +C CP + I + ++ I LCT C C + CPV+CI +
Sbjct: 6 DDCINCDVCEPECP-NGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPL 60
>pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 606 NKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650
+ C+ C C CPV+A I + I + C C C CPV
Sbjct: 6 DSCVSCGACASECPVNA-ISQGDSIFVIDADTCIDCGNCANVCPV 49
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 607 KCIGCTLCIQSCPVDAI------------IGAAKHMHTIFS---KLCTGCDLCIKKCPVN 651
KCIGC+LC +CP AI + A + ++ C C LC + CP
Sbjct: 52 KCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTG 111
Query: 652 CISM 655
I +
Sbjct: 112 AIVL 115
>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
Structures
Length = 77
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658
A + CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKDASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 659 TPCRTGWDAWSQKKAD 674
P W ++ QK D
Sbjct: 60 VP--EEWKSYIQKNRD 73
>pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCAPECPAQAI 54
>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
Average Structure
Length = 77
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 608 CIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW 665
CIG C++ CPVD I + + I +C C C CPV+ I + P W
Sbjct: 8 CIGTKDASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP--EEW 64
Query: 666 DAWSQKKAD 674
++ QK D
Sbjct: 65 KSYIQKNRD 73
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCESECPAQAI 54
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
And Docking Simulation
Length = 59
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 602 IIKENKCIGCTLCIQSCP-VDAII-GAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654
+I +CIGC C++ CP V A+I G K M T I CPV IS
Sbjct: 3 VIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57
>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECNDCALCEPECPAQAI 54
>pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDSCIDCALCEPECPAQAI 54
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
Vinelandii At 2.3 Angstroms Resolution
pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
Temperature, 1.35 A
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
K, 1.35 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
Length = 106
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
Facilitates Proton Transfer To The Reduced [3fe-4s]
Cluster
Length = 106
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 602 IIKENKCIGCT--LCIQSCP-VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 651
+I+++ C+ C C+++CP AII A + S+ C GC CI CP N
Sbjct: 94 LIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFN 146
>pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AYVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650
A + + CI C C CPV+ I + ++ I + C C C CPV
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQEGS--IYAIDADSCIDCGSCASVCPV 48
>pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIDPDECIDCALCEPECPAQAI 54
>pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGCTLC--IQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C C ++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AHVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ CPV+ + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|2ZVS|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|B Chain B, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|C Chain C, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
Length = 85
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPV 650
A++ KCI C +C CP +A I H++ I S CT C C K CP+
Sbjct: 1 ALLITKKCINCDMCEPECPNEA-ISMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55
>pdb|3GYX|B Chain B, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|D Chain D, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|F Chain F, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|H Chain H, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|J Chain J, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|L Chain L, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 166
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 603 IKENKCIGC-----TLCIQSCPVDAIIGAAKHMHTIFSK--LCTGCDLCIKKCPVNCIS 654
+ +KC GC T C+ CP D +I + M + C C CIK CP I+
Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAIT 62
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 572 KGIIKLAKYLNKPIIPLN-TIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHM 630
K +IK +KP +P + T Y +E+S+ + + KC+ C C+ +C + A K +
Sbjct: 111 KLVIKYKARASKPFLPKDKTEYVDERSKSLTVDR-TKCLLCGRCVNACGKNTETYAMKFL 169
Query: 631 H----TIFSKL---------CTGCDLCIKKCPVNCIS 654
+ TI C C CI CPV +S
Sbjct: 170 NKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS 206
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 579 KYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKL 637
K+LNK TI G E +C + C+ C CI +CPV A + HM + + L
Sbjct: 167 KFLNKN---GKTIIGAEDEKC---FDDTNCLLCGQCIIACPV-AALSEKSHMDRVKNAL 218
>pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
Ferredoxin I. (Fe-S) Cluster-Driven Protein
Rearrangement
Length = 106
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ PVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
Length = 106
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + + CI C T C++ PVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 193 HYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 234
+YR +W Y Y YA ISD I+ I +I EF +PF
Sbjct: 528 YYRGCPSWSWYYRYHYAPRISDVIKGIDQNI---EFHKGQPF 566
>pdb|1RGV|A Chain A, Crystal Structure Of The Ferredoxin From Thauera Aromatica
Length = 80
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 653
A+ + C C C++ CP +AI ++ I C+ C C CP +CI
Sbjct: 1 ALYINDDCTACDACVEECPNEAIT-PGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCI 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,610,792
Number of Sequences: 62578
Number of extensions: 983477
Number of successful extensions: 2336
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2172
Number of HSP's gapped (non-prelim): 143
length of query: 736
length of database: 14,973,337
effective HSP length: 106
effective length of query: 630
effective length of database: 8,340,069
effective search space: 5254243470
effective search space used: 5254243470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)