BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9410
(736 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1XW11|SYQ_POLNS Glutamine--tRNA ligase OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=glnS PE=3 SV=1
Length = 590
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/543 (57%), Positives = 402/543 (74%), Gaps = 16/543 (2%)
Query: 13 GNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYN-----GLCNLRFDDTNPLKENK 67
G +P +ITRF PEPNGYLHIGHAKSI +NF LA YN CN+R DDTNP+KE+
Sbjct: 43 GEAIPSIITRFPPEPNGYLHIGHAKSICLNFGLASDYNNQPGGARCNMRLDDTNPVKEDV 102
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EY +SI+ +KWL F+W +Y+ASDYFD LY+ AE LI SG AYVDSQ+ ++I+ N
Sbjct: 103 EYADSILDAVKWLGFDW---GTHLYHASDYFDRLYEFAEILIQSGKAYVDSQSADDIHTN 159
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RGN + G+NSPF +R P E+L LFR MR G+FKDG HVLR+KI+M NI MRDP++YR
Sbjct: 160 RGNFGQAGKNSPFRDRTPEENLQLFRDMRDGKFKDGEHVLRLKIDMAHPNIVMRDPVVYR 219
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
IRH +H+RT + WCIYP+YD+ H ISDA+ENI+HSICTLEF+++RP Y+WI+N + +
Sbjct: 220 IRHTDHHRTGSKWCIYPLYDFTHCISDALENISHSICTLEFENNRPLYDWIVNSLKELGV 279
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
K P P Q+EF+RLNLT+TITSKRKLL+L+E+K V+GWDDPRMPT++G+RRRGYTPESI+
Sbjct: 280 FKDPVPHQHEFARLNLTYTITSKRKLLQLVEEKHVEGWDDPRMPTIVGIRRRGYTPESIR 339
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LFC+RIGVSK+DSWI++ L+QALRDDL+++APR AVL P+KL++ NF + C+AP
Sbjct: 340 LFCERIGVSKADSWIDMSTLDQALRDDLEVRAPRATAVLKPLKLVVENFDAPTKEACSAP 399
Query: 368 LFSRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYV 426
+H Y E R F ++ LWIE DDFM+ P K +FRLYPPI G+RVRLR+G+V
Sbjct: 400 ----RHPNYPEWGNREFNFTRELWIEADDFMQEPIKGFFRLYPPIDDQPGSRVRLRHGFV 455
Query: 427 VECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRL 486
VECTGF+ + V +V +FPDSKSGT S+NYKVKGNIHWIS + A+ E RLYD L
Sbjct: 456 VECTGFETDAQGNVTQVNVTHFPDSKSGTPGSNNYKVKGNIHWISAAEAIPAEVRLYDHL 515
Query: 487 FIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN--LLPQTQCTKC 544
F DPYP+ +K+F INPNSK+ ISAYLEP +K + QFE++ + +K
Sbjct: 516 FTDPYPD-SGDKNFLDAINPNSKQTISAYLEPCMKDAKAEDRFQFERHGYFVADQSDSKP 574
Query: 545 GYP 547
G P
Sbjct: 575 GKP 577
>sp|Q1LQ72|SYQ_RALME Glutamine--tRNA ligase OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=glnS PE=3 SV=1
Length = 582
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/529 (57%), Positives = 390/529 (73%), Gaps = 14/529 (2%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
DK G+ LP VITRF PEPNGYLHIGHAKSI +NF LA Y G C+LRFDDTNP+KE+ EY
Sbjct: 35 DKQGDPLPTVITRFPPEPNGYLHIGHAKSICVNFGLARDYAGRCHLRFDDTNPVKEDTEY 94
Query: 70 VNSIIKTIKWLNFNWDKVKK----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIY 125
V+SII + WL F+WD + +Y+ASDYFD LYK AE LI G AYVDSQ+ E+I
Sbjct: 95 VDSIIDAVHWLGFSWDSAQAGSTPHLYFASDYFDQLYKFAETLIERGVAYVDSQSAEQIA 154
Query: 126 INRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPII 185
RGN EPG+ SPF +R E+L LFR MR G++ DG HVLR KI+M + NI MRDP++
Sbjct: 155 AMRGNFSEPGKPSPFRDRSVEENLKLFREMRDGKYADGEHVLRAKIDMTAPNIVMRDPVL 214
Query: 186 YRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT 245
YRIRH +H+RT + WCIYPMYD+ H ISDAIENITHS+CTLEF+++RP Y+W+L +
Sbjct: 215 YRIRHAHHHRTGDKWCIYPMYDFTHCISDAIENITHSLCTLEFENNRPLYDWVLEHLRDA 274
Query: 246 NFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPES 305
P P QYEF+RLNLT+ ITSKR+L +L++++ V GWDDPRMPT++G+RRRGYTPES
Sbjct: 275 GVFANPLPHQYEFARLNLTYAITSKRRLKQLVDEQRVTGWDDPRMPTIVGIRRRGYTPES 334
Query: 306 IKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECT 365
I+LFC R+GVSK+DSWI++ LE A+RDDLD +APR +AVL+P+KLI+ N+ + Q EC+
Sbjct: 335 IQLFCDRVGVSKADSWIDMSTLEGAVRDDLDARAPRSVAVLDPLKLILDNYPEGQSEECS 394
Query: 366 APLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGY 425
AP+ +Q + R FP+S+ LWIER+DF E P K YFRL+P GN+VRLRYGY
Sbjct: 395 APVHPKQPEMGR---RVFPLSRELWIEREDFNENPPKGYFRLFP------GNKVRLRYGY 445
Query: 426 VVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDR 485
V+ECTG K+ + V+ V+ Y P++KSGT + + KVKGNIHW+S HA E RLYDR
Sbjct: 446 VIECTGVDKDADGNVIAVHANYLPETKSGTPGADSVKVKGNIHWVSAPHACEAEVRLYDR 505
Query: 486 LFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
LF DP P+ K+F +NP SKKV++AYLEP L+ P+ QFE++
Sbjct: 506 LFNDPNPD-AGGKNFLDALNPESKKVVTAYLEPGLRDAKPEDRFQFERH 553
>sp|B3R5N3|SYQ_CUPTR Glutamine--tRNA ligase OS=Cupriavidus taiwanensis (strain R1 / LMG
19424) GN=glnS PE=3 SV=1
Length = 585
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/531 (57%), Positives = 392/531 (73%), Gaps = 16/531 (3%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
DK G LP VITRF PEPNGYLHIGHAKSI +NF LA Y G C+LRFDDTNP+KE+ EY
Sbjct: 36 DKQGEPLPTVITRFPPEPNGYLHIGHAKSICLNFGLARDYGGRCHLRFDDTNPVKEDTEY 95
Query: 70 VNSIIKTIKWLNFNWDKVKK------RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEE 123
V SII + WL F+WD K +YYASDYFD LY AE LI G AYVDSQ+ E+
Sbjct: 96 VESIIDAVHWLGFSWDSEGKDGQKQPHLYYASDYFDQLYAFAETLIERGAAYVDSQSAEQ 155
Query: 124 IYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDP 183
I +RGN EPG+ SPF +R E+L LFR MR+G++ DG HVLR KI+M + NI MRDP
Sbjct: 156 IAASRGNFSEPGKPSPFRDRSVEENLQLFRDMRAGKYADGEHVLRAKIDMAAPNIVMRDP 215
Query: 184 IIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKID 243
++YRIRH +H+RT + WCIYPMYD+ H ISDA+ENITHS+CTLEF+++RP Y+W+L +
Sbjct: 216 VLYRIRHAHHHRTGDKWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLEHLR 275
Query: 244 KTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTP 303
+ + P P QYEF+RLNLT+ ITSKRKL +L++++ VDGWDDPRMPTL+G+RRRGYTP
Sbjct: 276 DSGVFRDPLPHQYEFARLNLTYAITSKRKLKQLVDEQRVDGWDDPRMPTLVGVRRRGYTP 335
Query: 304 ESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIE 363
ESI+LFC R+GV+K+DSWI++ LE ++RDDLD +A R +AVL+P+KLII N+ + Q E
Sbjct: 336 ESIQLFCDRVGVAKADSWIDMSTLEGSVRDDLDGRAARGVAVLDPLKLIIDNYPEGQSEE 395
Query: 364 CTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRY 423
C+AP+ ++ K R FP+S+ LWIER+DF E P K YFRL+P GN+VRL+Y
Sbjct: 396 CSAPVHPKKPELGK---RVFPLSRELWIEREDFNETPPKGYFRLFP------GNKVRLKY 446
Query: 424 GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLY 483
GYV+ECTG K+ + V+ V+ Y PD+KSGT + + KVKG IHW+S +HA E RLY
Sbjct: 447 GYVIECTGVDKDADGNVIAVHASYLPDTKSGTPGADSVKVKGVIHWVSAAHAYEAEVRLY 506
Query: 484 DRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
DRLF DP P+ K+F +NP+SK+VI+AYLEP L+ P+ QFE++
Sbjct: 507 DRLFNDPNPD-AGGKNFLDALNPDSKQVITAYLEPGLREAQPEDRFQFERH 556
>sp|A4SZM1|SYQ_POLSQ Glutamine--tRNA ligase OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=glnS PE=3 SV=1
Length = 590
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/528 (57%), Positives = 394/528 (74%), Gaps = 14/528 (2%)
Query: 13 GNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYN-----GLCNLRFDDTNPLKENK 67
G +P +ITRF PEPNGYLHIGHAKSI +NF LA YN CN+R DDTNP+KE+
Sbjct: 43 GEAIPSIITRFPPEPNGYLHIGHAKSICLNFGLAADYNNQSGGARCNMRLDDTNPVKEDV 102
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EY +SI+ +KWL F+W +Y+ASDYFD LY+ AE LI + AYVDSQ+ ++I+ N
Sbjct: 103 EYADSILDAVKWLGFDW---GTHLYHASDYFDRLYEFAEILIQNSKAYVDSQSADDIHTN 159
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RGN + G+NSP+ R P E+L LFR MR G+FKDG HVLR+KI+M NI MRDP++YR
Sbjct: 160 RGNFGQVGKNSPYRERTPDENLQLFREMRDGKFKDGEHVLRLKIDMAHPNIVMRDPVVYR 219
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
IRH +H+RT + WCIYP+YD+ H ISDA+EN++HSICTLEF+++RP Y+WI+N + +
Sbjct: 220 IRHTDHHRTGSKWCIYPLYDFTHCISDALENVSHSICTLEFENNRPLYDWIVNSLKELGV 279
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
K P P QYEF+RLNLT+TITSKRKLL+L+E++ V+GWDDPRMPT++G+RRRGYTPESI+
Sbjct: 280 FKDPVPHQYEFARLNLTYTITSKRKLLQLVEEQHVEGWDDPRMPTIVGIRRRGYTPESIR 339
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LFC+RIGVSK+DSWI++ L+QALRDDL+ +APR AVL P+KL++ NF C+AP
Sbjct: 340 LFCERIGVSKADSWIDMSTLDQALRDDLEARAPRATAVLKPLKLVVENFDAAHSEACSAP 399
Query: 368 LFSRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYV 426
+H + E R F +K LWIE DDFM+ P K +FRLYPPIG G+RVRLR+G+V
Sbjct: 400 ----RHPHHPEWGNREFNFTKELWIEADDFMQEPVKGFFRLYPPIGDQPGSRVRLRHGFV 455
Query: 427 VECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRL 486
VECT F+ + + +V YFPDSKSGT S+NYKVKGNIHWIS + A+ E RLYD L
Sbjct: 456 VECTDFETDAKGNITQVNVNYFPDSKSGTPGSNNYKVKGNIHWISAAEAIPAEVRLYDHL 515
Query: 487 FIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
F DP+P+ +K+F INP+SK+ I AYLEP +K + P+ QFE++
Sbjct: 516 FTDPHPD-SGDKNFLDTINPHSKETIKAYLEPCMKDVKPEDRFQFERH 562
>sp|Q0K808|SYQ_CUPNH Glutamine--tRNA ligase OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=glnS PE=3 SV=1
Length = 585
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/531 (57%), Positives = 391/531 (73%), Gaps = 16/531 (3%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
DK G LP VITRF PEPNGYLHIGHAKSI +NF LA Y G C+LRFDDTNP+KE+ EY
Sbjct: 36 DKAGEPLPTVITRFPPEPNGYLHIGHAKSICLNFGLARDYGGRCHLRFDDTNPVKEDTEY 95
Query: 70 VNSIIKTIKWLNFNWDKVKK------RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEE 123
V+SII + WL F+WD K +YYASDYFD LY AE LI G AY+DSQ E+
Sbjct: 96 VDSIIDAVHWLGFSWDSEGKDGTRQPHLYYASDYFDQLYAFAETLIERGAAYIDSQTAEQ 155
Query: 124 IYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDP 183
I +RGN EPG+ SP+ R E+L LFR MR+G++ DG HVLR KI+M + NI MRDP
Sbjct: 156 IAASRGNFSEPGKPSPYRERSVEENLQLFRDMRAGKYADGEHVLRAKIDMTAPNIVMRDP 215
Query: 184 IIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKID 243
++YRIRH +H+RT + WCIYPMYD+ H ISDA+ENITHS+CTLEF+++RP Y+W+L +
Sbjct: 216 VLYRIRHAHHHRTGDKWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLEHLR 275
Query: 244 KTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTP 303
+ + P P QYEF+RLNLT+ ITSKRKL +L++++ VDGWDDPRMPTL+G+RRRGYTP
Sbjct: 276 DSGVFRDPLPHQYEFARLNLTYAITSKRKLKQLVDEQRVDGWDDPRMPTLVGVRRRGYTP 335
Query: 304 ESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIE 363
ESI+LFC R+GV+K+DSWI++ LE A+RDDLD +A R +AVL+P+KLII N+ + Q E
Sbjct: 336 ESIQLFCDRVGVAKADSWIDMSTLEGAVRDDLDGRAARGVAVLDPLKLIIDNYPEGQSEE 395
Query: 364 CTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRY 423
C+AP+ ++ K R FP+S+ LWIER+DF E P K YFRL+P GN+VRL+Y
Sbjct: 396 CSAPVHPKKPELGK---RVFPLSRELWIEREDFNETPPKGYFRLFP------GNKVRLKY 446
Query: 424 GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLY 483
GYV+ECTG K+ + V+ V+ Y P++KSGT + + KVKG IHW+S +HA E RLY
Sbjct: 447 GYVIECTGVDKDADGNVIAVHASYLPETKSGTPGADSVKVKGVIHWVSAAHAYEAEVRLY 506
Query: 484 DRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
DRLF DP P+ K+F +NP+SK+VI+AYLEP L+ P+ QFE++
Sbjct: 507 DRLFNDPNPD-AGGKNFLDALNPDSKQVITAYLEPGLREAQPEDRFQFERH 556
>sp|Q8Y199|SYQ_RALSO Glutamine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000)
GN=glnS PE=3 SV=1
Length = 580
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/526 (56%), Positives = 394/526 (74%), Gaps = 11/526 (2%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D G+ LP +ITRF PEPNGYLHIGHAKSI++NF LA +Y G C+LRFDDTNP+KE+ EY
Sbjct: 36 DTAGHALPPIITRFPPEPNGYLHIGHAKSIWVNFGLAKEYGGRCHLRFDDTNPVKEDTEY 95
Query: 70 VNSIIKTIKWLNFNW-DKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINR 128
V+SII + WL ++W + + +YYASDYF+ LY AE LI G AY+DSQ+ E+I NR
Sbjct: 96 VDSIIDAVHWLGYSWQNGTGEHLYYASDYFEQLYGFAEVLIQRGAAYIDSQSAEQIAANR 155
Query: 129 GNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRI 188
G+ PG SPF +R E+L LFR MR+G+++DG HVLR +I+M + NI MRDP++YRI
Sbjct: 156 GDFTRPGTPSPFRDRSVEENLALFRDMRAGKYQDGQHVLRARIDMAAPNIVMRDPVLYRI 215
Query: 189 RHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFI 248
RH +H+RT + WCIYPMYD+ H ISDA+ENITHS+CTLEF+++RP Y+W+L+ + +
Sbjct: 216 RHAHHHRTGDAWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLDHLRDAGAL 275
Query: 249 KRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 308
P P QYEF+RL+LT+ ITSKRKLL+L+ +K VDGWDDPRMPTL+G+RRRGYTPESI+L
Sbjct: 276 PAPLPHQYEFARLHLTYAITSKRKLLQLVNEKRVDGWDDPRMPTLVGIRRRGYTPESIQL 335
Query: 309 FCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPL 368
FC+R+GVSK+DSWI++ ILE A+RDDLD +APR +AVL+P+KLI+ N + C+AP+
Sbjct: 336 FCERVGVSKADSWIDMSILEAAVRDDLDARAPRSVAVLDPVKLILDNVPADFNEPCSAPV 395
Query: 369 FSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
+Q + R FP+++ LWIER+DF E P K YFRL+P GN+VRLRYGYV+E
Sbjct: 396 HPKQPELGR---REFPLTRELWIEREDFTETPPKGYFRLFP------GNKVRLRYGYVIE 446
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
CTG K+ + + V+ PD+KSGT + + KVKGNIHW+S +HAL E RLYDRLF
Sbjct: 447 CTGCDKDADGNITAVHANIIPDTKSGTPGADSVKVKGNIHWVSAAHALEAEVRLYDRLFT 506
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
DP P+ +K+F +NP++K+V++AYLEP L P+ QFE++
Sbjct: 507 DPQPD-SGDKNFLDALNPDAKRVVTAYLEPTLATAKPEDRFQFERH 551
>sp|B2U846|SYQ_RALPJ Glutamine--tRNA ligase OS=Ralstonia pickettii (strain 12J) GN=glnS
PE=3 SV=1
Length = 576
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/526 (56%), Positives = 390/526 (74%), Gaps = 11/526 (2%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D G +P V+TRF PEPNGYLHIGHAKSI++NF +A YNG C+LRFDDTNP+KE+ EY
Sbjct: 32 DATGQPIPPVVTRFPPEPNGYLHIGHAKSIWVNFGMARDYNGRCHLRFDDTNPVKEDTEY 91
Query: 70 VNSIIKTIKWLNFNW-DKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINR 128
V+SII + WL ++W D + +YYASDYF+ LY AE LI G AYVDSQ+ E+I NR
Sbjct: 92 VDSIIDAVHWLGYSWSDAGGEHLYYASDYFEQLYGFAEVLIQRGVAYVDSQSAEQIAANR 151
Query: 129 GNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRI 188
G+ PG SPF +R E+L LFR MR+G++KDG HVLR KI+M + NI MRDP++YRI
Sbjct: 152 GDFTRPGTLSPFRDRSVDENLALFRDMRAGKYKDGEHVLRAKIDMAAPNIVMRDPVLYRI 211
Query: 189 RHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFI 248
RH +H+RT + WCIYPMYD+ H ISDA+ENITHS+CTLEF+++RP Y+W+L+ + +
Sbjct: 212 RHAHHHRTGDAWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLDHLRDAGVL 271
Query: 249 KRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 308
P P QYEF+RL+LT+ ITSKRKLL+L+ +K VDGWDDPRMPTL+G+RRRGYTPESI+L
Sbjct: 272 AAPLPHQYEFARLHLTYAITSKRKLLQLVTEKRVDGWDDPRMPTLVGIRRRGYTPESIQL 331
Query: 309 FCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPL 368
FC+R+GVSK+DSWI++ ILE A+RDDLD +APR +AVL+P+KL++ N + C+AP+
Sbjct: 332 FCERVGVSKADSWIDMSILEGAVRDDLDARAPRSVAVLDPVKLVLDNVPADFNEPCSAPV 391
Query: 369 FSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
+Q + R FP+++ LWIER+DF E P K YFRL+P GN+VRLRYGYV+E
Sbjct: 392 HPKQPELGR---REFPLTRELWIEREDFTETPPKGYFRLFP------GNKVRLRYGYVIE 442
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
CTG K+ + V+ PD+KSGT + + KVKGNIHW+S +HAL E RLYDRLF
Sbjct: 443 CTGCDKDAAGNITAVHANIIPDTKSGTPGADSVKVKGNIHWVSAAHALEAEVRLYDRLFS 502
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
DP P+ +K+F +NPNSKK++ A+LEP L + QFE++
Sbjct: 503 DPQPD-SGDKNFLDALNPNSKKIVKAFLEPTLATAKAEDRFQFERH 547
>sp|Q7VU94|SYQ_BORPE Glutamine--tRNA ligase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=glnS PE=3 SV=1
Length = 587
Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust.
Identities = 288/517 (55%), Positives = 379/517 (73%), Gaps = 12/517 (2%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
++ TRF PEPNGYLHIGHAKSI +NF LA Y G+C+LRFDDTNP KE +EYV++II+ +
Sbjct: 51 RIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAV 110
Query: 78 KWLNFNWDK-VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGR 136
WL F+W +Y+ASDYF+ +Y+ AE L+ +G AYVD Q+ EEI +RG L EPG
Sbjct: 111 HWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGT 170
Query: 137 NSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRT 196
+SP+ +R ESL R MR G+ DG+ VLR +I+M S NIN+RDP++YR+RH H+RT
Sbjct: 171 DSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRT 230
Query: 197 NNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256
N WCIYPMY +AHP+ DA+E ITHSICTLEF+D RPFY+WIL ++ + + RP P QY
Sbjct: 231 GNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQY 290
Query: 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316
EF+RLNLT+ +TSKRKLL+L+ + VDGWDDPRMPTL G+RRRGYTP SI+LFC R VS
Sbjct: 291 EFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVS 350
Query: 317 KSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY 376
KSDS I+ +LEQA+RDDLD APR +AVL+P+KL+I+N+ + + C+AP R
Sbjct: 351 KSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAP---RNPHDP 407
Query: 377 KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNK 436
+ +R FP ++ LWIE+DDF E P KKYFRL+P GN VRL+YGYVV CTGF K++
Sbjct: 408 QAGVREFPFTRELWIEQDDFREEPPKKYFRLFP------GNTVRLKYGYVVRCTGFTKDE 461
Query: 437 NNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVN 496
+ +VVEV +Y PD+KSGT + + KVKGNI W+S +HA+ + LYDRLF D +P+
Sbjct: 462 SGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPD-GG 520
Query: 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+KDF +NPNSK+ + A+LEP ++ + P QFE+
Sbjct: 521 DKDFLACLNPNSKQTVQAWLEPGIEAV-PGATWQFER 556
>sp|Q7W4T0|SYQ_BORPA Glutamine--tRNA ligase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=glnS PE=3 SV=1
Length = 587
Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust.
Identities = 288/517 (55%), Positives = 378/517 (73%), Gaps = 12/517 (2%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
++ TRF PEPNGYLHIGHAKSI +NF LA Y G+C+LRFDDTNP KE +EYV++II+ +
Sbjct: 51 RIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAV 110
Query: 78 KWLNFNWDK-VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGR 136
WL F+W +Y+ASDYF+ +Y+ AE L+ +G AYVD Q+ EEI +RG L EPG
Sbjct: 111 HWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGT 170
Query: 137 NSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRT 196
+SP+ +R ESL R MR G+ DG+ VLR +I+M S NIN+RDP++YR+RH H+RT
Sbjct: 171 DSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRT 230
Query: 197 NNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256
N WCIYPMY +AHP+ DA+E ITHSICTLEF+D RPFY+WIL ++ + + RP P QY
Sbjct: 231 GNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQY 290
Query: 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316
EF+RLNLT+ +TSKRKLL+L+ + VDGWDDPRMPTL G+RRRGYTP SI+LFC R VS
Sbjct: 291 EFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVS 350
Query: 317 KSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY 376
KSDS I+ +LEQA+RDDLD APR +AVL+P+KL+I+N + + C+AP R
Sbjct: 351 KSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNHPEGRSETCSAP---RNPHDP 407
Query: 377 KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNK 436
+ +R FP ++ LWIE+DDF E P KKYFRL+P GN VRL+YGYVV CTGF K++
Sbjct: 408 QAGVREFPFTRELWIEQDDFREEPPKKYFRLFP------GNTVRLKYGYVVRCTGFTKDE 461
Query: 437 NNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVN 496
+ +VVEV +Y PD+KSGT + + KVKGNI W+S +HA+ + LYDRLF D +P+
Sbjct: 462 SGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPD-GG 520
Query: 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+KDF +NPNSK+ + A+LEP ++ + P QFE+
Sbjct: 521 DKDFLACLNPNSKQTVQAWLEPGIEAV-PGATWQFER 556
>sp|Q7WGA6|SYQ_BORBR Glutamine--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=glnS PE=3 SV=1
Length = 587
Score = 620 bits (1599), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/517 (55%), Positives = 379/517 (73%), Gaps = 12/517 (2%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
++ TRF PEPNGYLHIGHAKSI +NF LA Y G+C+LRFDDTNP KE +EYV++II+ +
Sbjct: 51 RIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAV 110
Query: 78 KWLNFNWDK-VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGR 136
WL F+W +Y+ASDYF+ +Y+ AE L+ +G AYVD Q+ EEI +RG L EPG
Sbjct: 111 HWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGT 170
Query: 137 NSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRT 196
+SP+ +R ESL R MR G+ DG+ VLR +I+M S NIN+RDP++YR+RH H+RT
Sbjct: 171 DSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRT 230
Query: 197 NNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256
N WCIYPMY +AHP+ DA+E ITHSICTLEF+D RPFY+WIL ++ + + RP P QY
Sbjct: 231 GNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQY 290
Query: 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316
EF+RLNLT+ +TSKRKLL+L+ + VDGWDDPRMPTL G+RRRGYTP SI+LFC R VS
Sbjct: 291 EFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVS 350
Query: 317 KSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY 376
KSDS I+ +LEQA+RDDLD APR +AVL+P+KL+I+N+ + + C+AP R
Sbjct: 351 KSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAP---RNPHDP 407
Query: 377 KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNK 436
+ +R FP ++ LWIE+DDF E P KKYFRL+P GN VRL+YGYVV CTGF K++
Sbjct: 408 QAGVREFPFTRELWIEQDDFREEPPKKYFRLFP------GNTVRLKYGYVVRCTGFTKDQ 461
Query: 437 NNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVN 496
+ +VVEV +Y PD+KSGT + + KVKGNI W+S +HA+ + LYDRLF D +P+
Sbjct: 462 SGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPD-GG 520
Query: 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+KDF +NP+SK+ + A+LEP ++ + P QFE+
Sbjct: 521 DKDFLACLNPHSKQTVQAWLEPGIEAV-PGATWQFER 556
>sp|Q81ZS7|SYQ_NITEU Glutamine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=glnS1 PE=3 SV=1
Length = 556
Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/519 (56%), Positives = 391/519 (75%), Gaps = 20/519 (3%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+V TRF PEPNGYLHIGHAKSI +NF LA +Y G+C+LRFDDTNP KE +EYV++II+++
Sbjct: 27 RVETRFPPEPNGYLHIGHAKSICLNFGLALEYGGVCHLRFDDTNPEKEAQEYVDAIIESV 86
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
+WL F+W K+ +YYASDYFD LY+ AEYLI G AYVDS + +EI RG L E G N
Sbjct: 87 RWLGFDW---KEHLYYASDYFDQLYEFAEYLITQGKAYVDSLSADEIRRLRGTLTEAGTN 143
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
SP+ +R E+L+LFRRMR+GEF DG HVLR +I+M S NIN+RDP+IYRIRH++H RT
Sbjct: 144 SPYRDRSAEENLDLFRRMRAGEFPDGVHVLRARIDMASPNINLRDPVIYRIRHIHHQRTG 203
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRP-FPKQY 256
+ WCIYPMYDY H ISDA+E ITHS+CTLEF+DHRP Y+W+L+++ + K P P+Q
Sbjct: 204 DKWCIYPMYDYTHCISDALERITHSLCTLEFEDHRPLYDWVLDQLAE----KIPCHPQQI 259
Query: 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316
EF+RLNLT+++ SKRKL+ L+E K+VDGW+DPRM TL G+RRRGYTPESI+LF +RIG+S
Sbjct: 260 EFARLNLTYSVMSKRKLIDLVENKLVDGWNDPRMNTLAGLRRRGYTPESIRLFAERIGIS 319
Query: 317 KSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY 376
K+DSWI++ ILE LR+DL+ +A R +AVL+P+ LII NF D E C AP H Q
Sbjct: 320 KADSWIDMTILEDCLREDLNERALRRIAVLDPVSLIIDNFPDGHEETCYAP----NHPQK 375
Query: 377 KE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKN 435
E R ++K L+I+R+DFMEIP K +FRL P G VRLRY ++++CT K+
Sbjct: 376 PELGTRELRLTKQLYIDREDFMEIPNKGFFRLAP------GAEVRLRYAFIIKCTHVVKD 429
Query: 436 KNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIV 495
+++E++C Y PD+KSGT + KV+GNIHW+S ++A ++E RLYDRLFID +P+
Sbjct: 430 DQGKILEIHCVYDPDTKSGTAGAETRKVRGNIHWLSATYAKAVEIRLYDRLFIDSHPD-T 488
Query: 496 NNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
KDFK+ +NPNSK+VI+ Y+EP+L P++ QFE++
Sbjct: 489 EGKDFKISLNPNSKEVITGYVEPSLCEAQPEQRFQFERH 527
>sp|Q2KVX0|SYQ_BORA1 Glutamine--tRNA ligase OS=Bordetella avium (strain 197N) GN=glnS
PE=3 SV=1
Length = 586
Score = 608 bits (1569), Expect = e-173, Method: Compositional matrix adjust.
Identities = 283/517 (54%), Positives = 374/517 (72%), Gaps = 12/517 (2%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
++ TRF PEPNGYLHIGHAKSI +NF +A ++ G+C+LRFDDTNP KE++EYV++II+ +
Sbjct: 51 RIRTRFPPEPNGYLHIGHAKSICVNFGIAKEFGGVCHLRFDDTNPEKEDQEYVDAIIEAV 110
Query: 78 KWLNFNWD-KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGR 136
+WL F+W+ +Y+ASDYF+ +Y+ AE LI +G A+VD Q+ ++I RG L EPGR
Sbjct: 111 RWLGFDWNTDGNNNLYFASDYFEFMYEFAEALIEAGHAFVDEQSADDIRAQRGTLTEPGR 170
Query: 137 NSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRT 196
NSPF +R +ESL R MR G+ DG+ VLR +I+M S NIN+RDP++YR+RH H+RT
Sbjct: 171 NSPFRDRPAAESLTRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHAAHHRT 230
Query: 197 NNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256
+ WCIYPMY +AHP+ DA+E ITHSICTLEF+D RPFY+WIL ++ + RP P+QY
Sbjct: 231 GDKWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLADLGKLARPLPRQY 290
Query: 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316
EFSRLN+++ +TSKRKLL+L+ + VDGWDDPRMPTL G+RRRGYT +I+LFC R VS
Sbjct: 291 EFSRLNMSYIVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTASAIRLFCDRTAVS 350
Query: 317 KSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY 376
KSDS I+ +LEQA+RDDLD R +AVL+P+KL+I+N+ +Q C AP R
Sbjct: 351 KSDSRIDYSLLEQAVRDDLDPGTTRSVAVLDPLKLVITNYPKDQTEVCKAP---RNPHDP 407
Query: 377 KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNK 436
+ R FP S+ LWIERDDF E KKYFRL+P GN VRL+YGYVV CTGF K++
Sbjct: 408 EAGQREFPFSRELWIERDDFREEAPKKYFRLFP------GNLVRLKYGYVVRCTGFTKDE 461
Query: 437 NNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVN 496
+ EV +Y PD+KSGT + + KVKGNI W+S +HA+ E RLYDRLF DP+P+
Sbjct: 462 AGNITEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAEVRLYDRLFADPHPD-GG 520
Query: 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+KDF +NPNS + + A+LEP + P QFE+
Sbjct: 521 DKDFLACLNPNSIQTVQAWLEPGTRAE-PGATWQFER 556
>sp|P57000|SYQ_NEIMA Glutamine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=glnS PE=3 SV=1
Length = 562
Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/529 (51%), Positives = 352/529 (66%), Gaps = 22/529 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF LAY Y+GLCNLRFDDTNP KEN EY
Sbjct: 20 DLKSGKHEAVQTRFPPEPNGYLHIGHAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEY 79
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
VN+I + ++WL F+W + +AS+YFD LY A LI G AYVD EE+ RG
Sbjct: 80 VNAIKEDVEWLGFHWAGEPR---FASNYFDQLYDYAVGLIKDGKAYVDDLTPEEMREYRG 136
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L E G+NSP+ +R E+L+LF RM++GEF DG+ LR+KI+M S NINMRDP+IYRIR
Sbjct: 137 TLTEAGKNSPYRDRSVEENLDLFTRMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIR 196
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+H+ T + WCIYPMYDY H ISDAIE ITHS+CTLEF+ HRP Y+W+L+ I + +
Sbjct: 197 RAHHHNTGDKWCIYPMYDYTHCISDAIEGITHSLCTLEFEAHRPLYDWVLDNIHAPHATR 256
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRL L +TITSKRKL +L+ +K V GWDDPRMPT+ GMRRRGYTPE ++LF
Sbjct: 257 ---PRQYEFSRLELLYTITSKRKLNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLF 313
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
KR G+SKS++ +++ +LE A+R++L+ APR+MAVLNP+K+ ++NF + + F
Sbjct: 314 AKRAGISKSENIVDMSVLEGAIREELENSAPRLMAVLNPLKVTLTNF-EAGRTQSRRAAF 372
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
H + E R PIS+ ++IE DDF E P K + RL P G VRLR+GYV++C
Sbjct: 373 HPNHEEMGE--REVPISQTIYIEADDFAENPPKGFKRLIP------GGEVRLRHGYVIKC 424
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K++ VVE+ C D + K KVKG IHW+S HA I+ RLYDRLF
Sbjct: 425 DEVVKDEAGNVVELKCSI--DHDTLGKNPEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTI 482
Query: 490 PYPNIVNNKD-----FKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P+ V +D F +NP S K I+AY EP K + + QFE+
Sbjct: 483 ERPDAVRGEDGEYLPFTDFLNPESVKEITAYAEPAAKDLPAESRWQFER 531
>sp|Q7NX86|SYQ_CHRVO Glutamine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=glnS PE=3 SV=1
Length = 560
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/520 (50%), Positives = 349/520 (67%), Gaps = 24/520 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V+TRF PEPNG+ HIGHAK+I INF LA YNG CNLR DDTNP KE+ E+V + + I
Sbjct: 30 VVTRFPPEPNGFAHIGHAKAICINFGLAEDYNGQCNLRMDDTNPEKESDEFVEAFKQDIS 89
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL F W+ + YASDYFD LY A LI +G AYVD + EE+ RGNL EPG+NS
Sbjct: 90 WLGFKWNG---EVRYASDYFDRLYDYAVELIQAGKAYVDDLSAEEMRQYRGNLTEPGKNS 146
Query: 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNN 198
P+ +R P E+L+LF RM++GEF DG+ LR+KI+M S NIN+RDP IYRIR V+H+RT +
Sbjct: 147 PYRDRTPEENLDLFTRMKNGEFPDGSKTLRLKIDMASGNINLRDPAIYRIRRVHHHRTGD 206
Query: 199 NWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEF 258
WCIYPMYDY H ISDAIE ITHS+C+LEF+DHRP Y+W+L+ I + P+Q EF
Sbjct: 207 KWCIYPMYDYTHCISDAIEGITHSLCSLEFEDHRPLYDWVLDNISIEH-----HPQQIEF 261
Query: 259 SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318
SRL L + +TSKRKL L+ V GWDDPRMPT+ GMRRRGY+P IKLF +RIGVSKS
Sbjct: 262 SRLELLYALTSKRKLQALVNDGAVTGWDDPRMPTIAGMRRRGYSPAGIKLFAQRIGVSKS 321
Query: 319 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE 378
++ I++ ILE A+R+ L+ +PR+MAV+NP+K+ ++N+ +AP F H ++ E
Sbjct: 322 ENIIDMAILEGAVRETLENDSPRVMAVVNPLKVTLTNYDAAVTASRSAP-FHPHHPEFGE 380
Query: 379 KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNN 438
R PI++ +WIERDDF E P K+ RL +G VRLRY YV++C K+ +
Sbjct: 381 --RDVPIAREIWIERDDFAETPPPKWQRL------TAGGEVRLRYSYVIKCDEVVKDAAD 432
Query: 439 EVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNK 498
E+VE+ C D + K KVKG IHW+S HA+ + R Y+RLF + P+ V +
Sbjct: 433 EIVELKCSI--DHDTLGKNPEGRKVKGVIHWVSAEHAIQADVRWYERLFTEQRPDAVRGE 490
Query: 499 -----DFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
DF+ +NP S K++ AY+E ++ P+ QFE+
Sbjct: 491 DGEYVDFRQFLNPESLKLVPAYVEASVLQAEPESRFQFER 530
>sp|Q5F7G0|SYQ_NEIG1 Glutamine--tRNA ligase OS=Neisseria gonorrhoeae (strain ATCC 700825
/ FA 1090) GN=glnS PE=3 SV=2
Length = 562
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/529 (51%), Positives = 351/529 (66%), Gaps = 22/529 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF LAY Y+GLCNLRFDDTNP KEN EY
Sbjct: 20 DLKSGKHEAVQTRFPPEPNGYLHIGHAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEY 79
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
VN+I + ++WL F+W + +ASDYFD LY A LI G AYVD EE+ RG
Sbjct: 80 VNAIKEDVEWLGFHWAGEPR---FASDYFDRLYDYAVGLIKDGKAYVDDLTPEEMREYRG 136
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L E G+NSP+ +R E+L+LF RM++GEF DG+ LR+KI+M + NINMRDP+IYRIR
Sbjct: 137 TLTEAGKNSPYRDRSIEENLDLFTRMKNGEFPDGSKTLRLKIDMAAGNINMRDPVIYRIR 196
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+H+ T + WCIYPMYDY H ISDAIE ITHS+CTLEF+ HRP Y+W+L+ I + +
Sbjct: 197 RAHHHNTGDKWCIYPMYDYTHCISDAIEGITHSLCTLEFEAHRPLYDWVLDNIPALHATR 256
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRL L +TITSKRKL +L+ +K V GWDDPRMPT+ GMRRRGYTPE ++LF
Sbjct: 257 ---PRQYEFSRLELLYTITSKRKLNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGVRLF 313
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
KR G+SKS++ +++ +LE A+R++L+ APR+MAVLNP+K+ ++NF + + F
Sbjct: 314 AKRAGISKSENIVDMSVLEGAIREELENSAPRLMAVLNPLKVTLTNFQAGK-TQSRRAAF 372
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
H + + R P+S+ ++IE DDF E P K + RL P G VRLR+GYV++C
Sbjct: 373 HPNHEEMGD--REVPVSQTIYIEADDFAENPPKGFKRLIP------GGEVRLRHGYVIKC 424
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K++ VVE+ C D + K KVKG IHW+S HA I+ RLYDRLF
Sbjct: 425 GEVVKDEAGNVVELKCSI--DHDTLGKNPEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTV 482
Query: 490 PYPNIVNNKD-----FKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P V +D F +NP S K I+AY EP K + + QFE+
Sbjct: 483 ERPGAVRGEDGEYLPFTDFLNPESVKEITAYAEPAAKDLPAESRWQFER 531
>sp|Q0SVB1|SYQ_CLOPS Glutamine--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=glnS PE=3 SV=1
Length = 552
Score = 525 bits (1351), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/526 (50%), Positives = 353/526 (67%), Gaps = 24/526 (4%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
I D K +ITRF PEPNGYLHIGHAKSI +NFEL ++NG NLRFDDTNP+KE+
Sbjct: 16 IDDLDSKKHDTIITRFPPEPNGYLHIGHAKSIVLNFELGKEFNGRTNLRFDDTNPIKEDT 75
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EYV SI + + WL +NW + +++AS+YFD +YK A LI G AYV EEI
Sbjct: 76 EYVESIKEDVHWLGYNWSE----LHFASNYFDEMYKRALLLIKKGKAYVCDLTPEEIKEY 131
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RG L EPG+ SP+ NR E+L+LF RMR GEF+DG+ VLR KI+M S NIN RDPIIYR
Sbjct: 132 RGTLTEPGKESPYRNRSVEENLDLFERMRKGEFEDGSKVLRAKIDMSSPNINFRDPIIYR 191
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
I H +H+ T + WCIYPMYD+AHP+ DAIE ITHSICTLEF DHRP Y+W + + + N
Sbjct: 192 IAHASHHNTGDKWCIYPMYDFAHPLEDAIEGITHSICTLEFADHRPLYDWFVKECEMEN- 250
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EF+RLN+T+T+ SKRKL +L+++ IVDGWDDPRMPT+ G+RRRGYTP+SI+
Sbjct: 251 ----IPRQIEFARLNITNTVMSKRKLKQLVDEGIVDGWDDPRMPTVAGLRRRGYTPKSIR 306
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
FCK IGV+K+DS ++ ++LE +R+DL APR MAV+NP+KL+I+N+ E +
Sbjct: 307 NFCKAIGVAKADSTVDYQMLEHFIREDLQETAPRAMAVINPLKLVITNYP-----EGKSE 361
Query: 368 LFSRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGY 425
+ ++ E R S+ ++IER+DFME P KKYFRL+P GN VRL+ Y
Sbjct: 362 ILEIENNPKDESAGKRAVTFSREIYIEREDFMENPPKKYFRLFP------GNEVRLKGAY 415
Query: 426 VVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDR 485
V+C K++N EV E++C Y P++KSGT + KVKG IHW+ ++ + E RLY+
Sbjct: 416 FVKCNEVIKDENGEVTEIHCTYDPETKSGTGFTGR-KVKGTIHWVDANNCIPAEFRLYEP 474
Query: 486 LFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQF 531
L +D K F INPNS + ++EP+ K P+ Q
Sbjct: 475 LILDDCEE-NEGKHFLEQINPNSLTICKGFIEPSAKDAKPQDKYQL 519
>sp|P56927|SYQ_NEIMB Glutamine--tRNA ligase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=glnS PE=3 SV=1
Length = 562
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/529 (51%), Positives = 351/529 (66%), Gaps = 22/529 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF LAY Y+GLCNLRFDDTNP KEN EY
Sbjct: 20 DLESGKHTAVQTRFPPEPNGYLHIGHAKSICLNFGLAYIYDGLCNLRFDDTNPEKENDEY 79
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
VN+I + ++WL F+W + +AS+YFD LY A LI G AYVD EE+ RG
Sbjct: 80 VNAIKEDVEWLGFHWAGEPR---FASNYFDQLYDYAVGLIKDGKAYVDDLTPEEMREYRG 136
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L E G+NSP+ +R E+L+LF RM++GEF DG+ LR+KI+M S NINMRDP+IYRIR
Sbjct: 137 TLTEAGKNSPYRDRSVEENLDLFTRMKNGEFPDGSKTLRLKIDMASGNINMRDPVIYRIR 196
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+H+ T + WCIYPMYDY H ISDAIE ITHS+CTLEF+ HRP Y+ +L+ I + +
Sbjct: 197 RAHHHNTGDKWCIYPMYDYTHCISDAIEGITHSLCTLEFEAHRPLYDCVLDNIPAPHATR 256
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRL L +TITSKRKL +L+ +K V GWDDPRMPT+ GMRRRGYTPE ++LF
Sbjct: 257 ---PRQYEFSRLELLYTITSKRKLNQLVVEKHVSGWDDPRMPTISGMRRRGYTPEGLRLF 313
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
KR G+SKS++ +++ +LE A+R++L+ APR+MAVLNP+K+ ++NF + + F
Sbjct: 314 AKRAGISKSENIVDMSVLEGAIREELENSAPRLMAVLNPLKVTLTNF-ETGRTQSRRAAF 372
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
H + E R PIS+ ++IE DDF E P K + RL P G VRLR+GYV++C
Sbjct: 373 HPNHEEMGE--REVPISQTIYIEADDFAENPPKGFKRLIP------GGEVRLRHGYVIKC 424
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K++ VVE+ C D + K KVKG IHW+S HA I+ RLYDRLF
Sbjct: 425 DEVVKDEAGNVVELKCSI--DHDTLGKNPEGRKVKGVIHWVSAEHAAEIKVRLYDRLFTV 482
Query: 490 PYPNIVNNKD-----FKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P+ V +D F +NP S K I+AY EP K + + QFE+
Sbjct: 483 ERPDAVRGEDGEYLPFTDFLNPESVKEITAYAEPAAKDLPAESRWQFER 531
>sp|Q0TTG1|SYQ_CLOP1 Glutamine--tRNA ligase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=glnS PE=3 SV=1
Length = 552
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/526 (50%), Positives = 353/526 (67%), Gaps = 24/526 (4%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
I D K +ITRF PEPNGYLHIGHAKSI +NFEL ++NG NLRFDDTNP KE+
Sbjct: 16 IDDLDSKKHDTIITRFPPEPNGYLHIGHAKSIVLNFELGKEFNGRTNLRFDDTNPTKEDT 75
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EYV SI + + WL +NW + +++AS+YFD +YK A LI G AYV EEI
Sbjct: 76 EYVESIKEDVHWLGYNWSE----LHFASNYFDEMYKRALLLIKKGKAYVCDLTPEEIKEY 131
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RG L EPG+ SP+ NR E+L+LF RMR GEF+DG+ VLR KI+M S NIN RDPIIYR
Sbjct: 132 RGTLTEPGKESPYRNRSVEENLDLFERMRKGEFEDGSKVLRAKIDMSSPNINFRDPIIYR 191
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
I H +H+ T + WCIYPMYD+AHP+ DAIE ITHSICTLEF DHRP Y+W + + + +
Sbjct: 192 IAHASHHNTGDKWCIYPMYDFAHPLEDAIEGITHSICTLEFADHRPLYDWFVKECEMES- 250
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EF+RLN+T+T+ SKRKL +L+++ IVDGWDDPRMPT+ G+RRRGYTP+SI+
Sbjct: 251 ----VPRQIEFARLNITNTVMSKRKLKQLVDEGIVDGWDDPRMPTVAGLRRRGYTPKSIR 306
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
FCK IGV+K+DS ++ ++LE +R+DL APR MAV+NP+KL+I+N+ + + +
Sbjct: 307 NFCKAIGVAKADSTVDSQMLEHFIREDLQETAPRAMAVINPLKLVITNYPEGE-----SE 361
Query: 368 LFSRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGY 425
+ ++ E R S+ ++IER+DFME P KKYFRL+P GN VRL+ Y
Sbjct: 362 ILEIENNPKDESAGKRAVTFSREVYIEREDFMENPPKKYFRLFP------GNEVRLKGAY 415
Query: 426 VVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDR 485
V+C K++N EV E++C Y P++KSGT + KVKG IHW+ ++ + E RLY+
Sbjct: 416 FVKCNEVIKDENGEVTEIHCTYDPETKSGTGFTGR-KVKGTIHWVDANNCIPAEFRLYEP 474
Query: 486 LFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQF 531
L +D K F INPNS + ++EP+ K P+ Q
Sbjct: 475 LILDDCEE-NEGKHFLEQINPNSLTICKGFIEPSAKDAKPQDKYQL 519
>sp|Q8XMP3|SYQ_CLOPE Glutamine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=glnS PE=3 SV=1
Length = 552
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/526 (50%), Positives = 353/526 (67%), Gaps = 24/526 (4%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
I D K +ITRF PEPNGYLHIGHAKSI +NFEL ++NG NLRFDDTNP KE+
Sbjct: 16 IDDLDSKKHDTIITRFPPEPNGYLHIGHAKSIVLNFELGKEFNGRTNLRFDDTNPTKEDT 75
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EYV SI + + WL +NW + +++AS+YFD +YK A LI G AYV EEI
Sbjct: 76 EYVESIKEDVHWLGYNWSE----LHFASNYFDEMYKRALLLIKKGKAYVCDLTPEEIKEY 131
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RG L EPG+ SP+ NR E+L+LF RMR GEF+DG+ VLR KI+M S NIN RDPIIYR
Sbjct: 132 RGTLTEPGKESPYRNRSIEENLDLFERMRKGEFEDGSKVLRAKIDMSSPNINFRDPIIYR 191
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
I H +H+ T + WCIYPMYD+AHP+ DAIE ITHSICTLEF DHRP Y+W + + + +
Sbjct: 192 IAHASHHNTGDKWCIYPMYDFAHPLEDAIEGITHSICTLEFADHRPLYDWFVKECEMES- 250
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EF+RLN+T+T+ SKRKL +L+++ IVDGWDDPRMPT+ G+RRRGYTP+SI+
Sbjct: 251 ----VPRQIEFARLNITNTVMSKRKLKQLVDEGIVDGWDDPRMPTVAGLRRRGYTPKSIR 306
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
FCK IGV+K+DS ++ ++LE +R+DL APR MAV+NP+KL+I+N+ + + +
Sbjct: 307 NFCKAIGVAKADSTVDSQMLEHFIREDLQETAPRAMAVINPLKLVITNYPEGE-----SE 361
Query: 368 LFSRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGY 425
+ ++ E R S+ ++IER+DFME P KKYFRL+P GN VRL+ Y
Sbjct: 362 ILEIENNPKDESAGKRAVTFSREVYIEREDFMENPPKKYFRLFP------GNEVRLKGAY 415
Query: 426 VVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDR 485
V+C K++N EV E++C Y P++KSGT + KVKG IHW+ ++ + E RLY+
Sbjct: 416 FVKCNEVIKDENGEVTEIHCTYDPETKSGTGFTGR-KVKGTIHWVDANNCIPAEFRLYEP 474
Query: 486 LFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQF 531
L +D K F INPNS + ++EP+ K P+ Q
Sbjct: 475 LILDDCEE-NEGKHFLEQINPNSLTICKGFIEPSAKDAKPQDKYQL 519
>sp|Q89KR6|SYQ_BRAJA Glutamine--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=glnS PE=3 SV=1
Length = 558
Score = 518 bits (1335), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/518 (49%), Positives = 352/518 (67%), Gaps = 22/518 (4%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+++TRF PEPNGYLHIGHAKSI +NF +A ++ G C+LRFDDTNP+KE +EY++SI +
Sbjct: 29 EIVTRFPPEPNGYLHIGHAKSIALNFGIAQEFPGRCHLRFDDTNPVKEEQEYIDSIQADV 88
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
WL F+W K +++ASDYFD LY+ AE LI G AYVD Q EEI +RG L EPG+N
Sbjct: 89 HWLGFDW---GKNLFFASDYFDRLYEWAETLIRDGLAYVDDQTQEEIRTSRGTLTEPGKN 145
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
SPF +R E+L+LFRRM++GEF +GA VLR KI+M + NIN+RDP++YRI H +H RT
Sbjct: 146 SPFRDRSVDENLDLFRRMKAGEFPNGARVLRAKIDMAAGNINLRDPVLYRILHAHHPRTG 205
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYE 257
N WCIYP YDYAH SDAIE ITHSICTLEF+DHRP Y+W + K+ + P QYE
Sbjct: 206 NAWCIYPSYDYAHGQSDAIEGITHSICTLEFEDHRPLYDWFIEKLPVPS-----KPHQYE 260
Query: 258 FSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSK 317
F+RLNLT+T+ SKR L +L+ + V GWDDPRMPT+ GMRRRG P +++ F KRIGV+K
Sbjct: 261 FARLNLTYTLLSKRVLTQLVREGHVAGWDDPRMPTMAGMRRRGVPPAALREFVKRIGVAK 320
Query: 318 SDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYK 377
++S +++ +LE +R++L+ A R MAVL P+K++I N+ + Q E A +
Sbjct: 321 ANSVVDVGMLEFCIREELNRTAQRRMAVLKPLKVVIENYPEGQTEELEAINHPDDPSAGT 380
Query: 378 EKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKN 437
K+ + + L+IE+DDFME P KK+FRL P GN VRLRY Y V+CTG KN++
Sbjct: 381 RKITF---GRELYIEQDDFMENPPKKFFRLSP------GNEVRLRYAYFVKCTGVIKNES 431
Query: 438 NEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNN 497
EVVE+ C Y P ++ G KVK +HW+S + + E R+Y++LF +P P+ N
Sbjct: 432 GEVVELRCTYDPATRGGNA-PDGRKVKATMHWLSAAASKPAEIRIYNQLFANPSPDASN- 489
Query: 498 KDFKLLINPNSKKVIS-AYLEPNLKLIFPKKHAQFEQN 534
F +NP S +++S A +E ++ + QFE+
Sbjct: 490 --FAADLNPQSLEILSNARVEASVAESNSTEPMQFERQ 525
>sp|A5N6Y3|SYQ_CLOK5 Glutamine--tRNA ligase OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=glnS PE=3 SV=1
Length = 556
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/540 (47%), Positives = 357/540 (66%), Gaps = 21/540 (3%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
I D + +V+TRF PEPNGYLHIGHAKSI +NF LA ++ G NLRFDDTNP KE+
Sbjct: 16 IEDLKSGEYEKVVTRFPPEPNGYLHIGHAKSIVLNFSLADEFEGKVNLRFDDTNPSKEDV 75
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EYV SI + +KWL +NWD + +AS YF+ +Y+ A +LI G AYV +EI
Sbjct: 76 EYVESIKEDVKWLGYNWDN----LCFASSYFERMYEYAVFLIKKGKAYVCDLTADEIREY 131
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RG L +PG+ SP+ NR E+ LF M++GEFKDG VLR KI+M S NINMRDP++YR
Sbjct: 132 RGTLTKPGKESPYRNRDVEENFKLFEGMKNGEFKDGEKVLRAKIDMASPNINMRDPVLYR 191
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
I H +H+ T + WCIYPMYD+AHP+ DAIE +THSICTLEF+DHRP Y+WI+ + + N
Sbjct: 192 IAHASHHNTGDRWCIYPMYDFAHPLEDAIEGVTHSICTLEFEDHRPLYDWIIQECEIEN- 250
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
PKQ EF+RLN+T+T+ SKRKL +L+++ VDGWDDPRMPT+ G+RRRG+TPESI+
Sbjct: 251 ----RPKQIEFARLNMTNTVMSKRKLKQLVDENFVDGWDDPRMPTIAGLRRRGFTPESIR 306
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
FC+ IGVSK+ S ++ ++L+ LRDDL+ +APR MA+LNP+K++I+N+ E +
Sbjct: 307 NFCRAIGVSKASSIVDSQMLDYFLRDDLEKEAPRTMAILNPLKVVITNY---PEGKTETF 363
Query: 368 LFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
+R P S+ ++IE++DFME P KKY+RL+P GN VRL+ Y +
Sbjct: 364 KIENNPDDASAGVREVPFSREIYIEQEDFMENPPKKYYRLFP------GNEVRLKSAYFI 417
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
+CT K+K+ V+E+ C Y P SK G KV+G +HWI+ A+ E RLY+ L
Sbjct: 418 KCTEAIKDKDGNVIELRCTYDPASKGGNS-PDGRKVRGTLHWINVDTAIPAEIRLYEPLI 476
Query: 488 IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN--LLPQTQCTKCG 545
++ F +NPNS KV+ ++EP++K + + QF ++ + +C+K G
Sbjct: 477 LEQQEKEGEEDLFLDHVNPNSLKVVKGFVEPDMKHVKSDEKFQFFRHGYFVLDGKCSKNG 536
>sp|Q8PNZ5|SYQ_XANAC Glutamine--tRNA ligase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=glnS PE=3 SV=1
Length = 579
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/528 (47%), Positives = 343/528 (64%), Gaps = 28/528 (5%)
Query: 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWL 80
TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+V +I ++WL
Sbjct: 37 TRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEFVVAIQDDVRWL 96
Query: 81 NFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPF 140
++W +++ +ASDYF + Y A+ LI G A+V + E++ RG L EPGRNSPF
Sbjct: 97 GYDWAQLR----HASDYFQVYYLAAQKLIRDGHAFVCDLSAEQVRQYRGTLTEPGRNSPF 152
Query: 141 YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW 200
R E+L+LF RMR+GEF DGA LR KI+M S NIN+RDP +YRI+HV H T N W
Sbjct: 153 RERSVEENLDLFARMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAW 212
Query: 201 CIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF--IKRPF------ 252
IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D + +P
Sbjct: 213 PIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLVGHPELLQPLLDKGLP 272
Query: 253 -----PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+RRRGYTP +++
Sbjct: 273 REAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGLRRRGYTPAAMR 332
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LF R+G+SK +S I+ +LE LR+DLD APR MAV++P+KL+++N E
Sbjct: 333 LFVDRVGISKQNSLIDFSVLEGCLREDLDAAAPRRMAVIDPLKLVLTNL---PEGHTETL 389
Query: 368 LFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
FS R P ++ LWIER+DF E+P K + RL P G +RLR +
Sbjct: 390 QFSNHPKDDSFGTREVPFARELWIEREDFAEVPPKGWKRLVP------GGEIRLRGAGIA 443
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
KN + E+VE+ P+S+ G + +N KVKG IHW+S +HA+ E RLYDRLF
Sbjct: 444 RVDEVIKNADGEIVELRGWLDPESRPGME-GANRKVKGTIHWVSAAHAVEAEIRLYDRLF 502
Query: 488 IDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
P+ + K ++ +NP SK+ + Y+EP+ + P++ QFE+
Sbjct: 503 SVEKPDDESEGKTYRDYLNPESKRNVRGYVEPSAAMAAPEQAFQFERT 550
>sp|Q8PCB3|SYQ_XANCP Glutamine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=glnS PE=3
SV=1
Length = 579
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/539 (46%), Positives = 344/539 (63%), Gaps = 28/539 (5%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K + TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+
Sbjct: 26 DLASGKHTAIRTRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEF 85
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V +I ++WL F W +++ +ASDYF++ Y AE LI G A+V + E++ RG
Sbjct: 86 VVAIQDDVRWLGFEWAQLR----HASDYFEVYYLAAEKLIRDGHAFVCDLSAEQVRQYRG 141
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPGRNSPF R E+L+LFRRMR+GEF DGA LR KI+M S NIN+RDP +YRI+
Sbjct: 142 TLTEPGRNSPFRERSVDENLDLFRRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIK 201
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN--- 246
HV H T N W IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D +
Sbjct: 202 HVEHQNTGNAWPIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLSGHPE 261
Query: 247 ----FIKRPFPK------QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 296
+ + +PK Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+
Sbjct: 262 LLAPLLGKGYPKEAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGL 321
Query: 297 RRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNF 356
RRRGYTP +++LF R+G+SK +S I+ +LE LR+DLD A R MAV++P+KL+++N
Sbjct: 322 RRRGYTPAAMRLFVDRVGISKQNSVIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNL 381
Query: 357 LDNQEIECTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSG 416
E FS R P ++ LWIER+DF E+P K + RL P G
Sbjct: 382 ---PEGHTETLQFSNHPKDESFGTREVPFARELWIEREDFAEVPPKGWKRLVP------G 432
Query: 417 NRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHAL 476
+RLR + K+ E+VE+ P+S+ G + SN KVKG IHW+S HA+
Sbjct: 433 GEIRLRGAGIARVDEVIKDAAGEIVELRGWLDPESRPGM-IGSNRKVKGTIHWVSAVHAV 491
Query: 477 SIEARLYDRLFIDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
E RLYDRLF P+ + K ++ +NP SK+ + Y+EP+ P++ QFE+
Sbjct: 492 EAEIRLYDRLFSVEKPDDESEGKTYRDYLNPESKRSVRGYVEPSAAQAAPEQAFQFERT 550
>sp|Q4UR70|SYQ_XANC8 Glutamine--tRNA ligase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=glnS PE=3 SV=1
Length = 579
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/539 (46%), Positives = 344/539 (63%), Gaps = 28/539 (5%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K + TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+
Sbjct: 26 DLASGKHTAIRTRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEF 85
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V +I ++WL F W +++ +ASDYF++ Y AE LI G A+V + E++ RG
Sbjct: 86 VVAIQDDVRWLGFEWAQLR----HASDYFEVYYLAAEKLIRDGHAFVCDLSAEQVRQYRG 141
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPGRNSPF R E+L+LFRRMR+GEF DGA LR KI+M S NIN+RDP +YRI+
Sbjct: 142 TLTEPGRNSPFRERSVDENLDLFRRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIK 201
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN--- 246
HV H T N W IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D +
Sbjct: 202 HVEHQNTGNAWPIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLSGHPE 261
Query: 247 ----FIKRPFPK------QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 296
+ + +PK Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+
Sbjct: 262 LLAPLLGKGYPKEAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGL 321
Query: 297 RRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNF 356
RRRGYTP +++LF R+G+SK +S I+ +LE LR+DLD A R MAV++P+KL+++N
Sbjct: 322 RRRGYTPAAMRLFVDRVGISKQNSVIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNL 381
Query: 357 LDNQEIECTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSG 416
E FS R P ++ LWIER+DF E+P K + RL P G
Sbjct: 382 ---PEGHTETLQFSNHPKDESFGTREVPFARELWIEREDFAEVPPKGWKRLVP------G 432
Query: 417 NRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHAL 476
+RLR + K+ E+VE+ P+S+ G + SN KVKG IHW+S HA+
Sbjct: 433 GEIRLRGAGIARVDEVIKDAAGEIVELRGWLDPESRPGM-IGSNRKVKGTIHWVSAVHAV 491
Query: 477 SIEARLYDRLFIDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
E RLYDRLF P+ + K ++ +NP SK+ + Y+EP+ P++ QFE+
Sbjct: 492 EAEIRLYDRLFSVEKPDDESEGKTYRDYLNPESKRSVRGYVEPSAAQAAPEQAFQFERT 550
>sp|Q3BX52|SYQ_XANC5 Glutamine--tRNA ligase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=glnS PE=3 SV=1
Length = 579
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/528 (47%), Positives = 341/528 (64%), Gaps = 28/528 (5%)
Query: 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWL 80
TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+V +I ++WL
Sbjct: 37 TRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEFVVAIQDDVRWL 96
Query: 81 NFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPF 140
+ W +++ +ASDYF + Y A+ LI G A+V + E++ RG L EPGRNSPF
Sbjct: 97 GYEWAQLR----HASDYFQVYYLAAQKLIRDGHAFVCDLSAEQVRQYRGTLTEPGRNSPF 152
Query: 141 YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW 200
R E+L LF RMR+GEF DGA LR KI+M S NIN+RDP +YRI+HV H T N W
Sbjct: 153 RERSVEENLELFARMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAW 212
Query: 201 CIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF--IKRPF------ 252
IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D + +P
Sbjct: 213 PIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLAGHPELLQPLLDKGLP 272
Query: 253 -----PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+RRRGYTP +++
Sbjct: 273 REAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGLRRRGYTPAAMR 332
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LF R+G+SK +S I+ +LE LR+DLD APR MAV++P+KL+++N E
Sbjct: 333 LFVDRVGISKQNSLIDFSVLEGCLREDLDAAAPRRMAVIDPLKLVLTNL---PEGHTETL 389
Query: 368 LFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
FS R P ++ LWIER+DF E+P K + RL P G +RLR +
Sbjct: 390 QFSNHPKDESFGTREVPFARELWIEREDFAEVPPKGWKRLVP------GGEIRLRGAGIA 443
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
KN + E+VE+ P+S+ G + +N KVKG IHW+S HA+ E RLYDRLF
Sbjct: 444 RVDEVIKNADGEIVELRGWLDPESRPGME-GANRKVKGTIHWVSAVHAVEAEIRLYDRLF 502
Query: 488 IDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
P+ + K ++ +NP SK+ + Y+EP+ + P++ QFE++
Sbjct: 503 SVEKPDDESEGKTYRDYLNPESKRNVRGYVEPSAAMAAPEQAFQFERS 550
>sp|Q1QMM1|SYQ_NITHX Glutamine--tRNA ligase OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=glnS PE=3 SV=1
Length = 558
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 342/525 (65%), Gaps = 21/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V+TRF PEPNGYLH+GHAKSI +NF +A ++ G C+LRFDDTNP KE +EY
Sbjct: 21 DLASGKHKSVVTRFPPEPNGYLHLGHAKSICLNFGIAEEFGGCCHLRFDDTNPTKEEQEY 80
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
+++I + ++WL F+W K ++YASDYF+ LY A++L+ +G AYVD Q+ E+I + RG
Sbjct: 81 IDAIQRDVRWLGFDW---GKNLHYASDYFEQLYAWAQHLVRAGKAYVDDQSQEDIRLARG 137
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPGR+SPF +R E+L+LF RMR+GEF +GA VLR +I+M S NIN+RDP++YRI
Sbjct: 138 TLTEPGRDSPFRDRPVDENLDLFARMRAGEFPNGARVLRARIDMASGNINLRDPVLYRIL 197
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H H RT W IYP YD+AH SD+IE+ITHSICTLEF+DHRP Y+W L+ N
Sbjct: 198 HAPHPRTGTAWNIYPSYDFAHGQSDSIEHITHSICTLEFEDHRPLYDWFLD-----NLPV 252
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P QYEF+RLN+THT+ SKR L +L+ V GWDDPRMPTL G++RRG E+++ F
Sbjct: 253 PSRPHQYEFARLNVTHTLLSKRILTELVRGGHVAGWDDPRMPTLAGLQRRGVPAEALREF 312
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
KRIGV+K++S +++ +L+ A+R+ L+ APR MAVL P+K++I N+ + + E A
Sbjct: 313 IKRIGVAKANSTVDVGMLDFAIRETLNKSAPRRMAVLRPLKIVIENYPEGESEELEAVNH 372
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
++ ++R+ + L+IE+DDFME P KK+FRL P G VRLRY Y V C
Sbjct: 373 PDDPSRGTRRIRF---GRELYIEQDDFMENPPKKFFRLSP------GREVRLRYAYFVTC 423
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
KN +VVE+ C Y P +K G KVK +HW+S + A+ E RLY LF
Sbjct: 424 REVVKNAAGDVVELRCTYDPATKGGNA-PDGRKVKATMHWVSAAEAVPAEIRLYGHLFAT 482
Query: 490 PYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
P+ N F +NP S + +S +EP L QFE+
Sbjct: 483 AQPDAAN---FASELNPQSLETLSGMVEPALARDDTDGAVQFERQ 524
>sp|Q88IU5|SYQ_PSEPK Glutamine--tRNA ligase OS=Pseudomonas putida (strain KT2440)
GN=glnS PE=3 SV=1
Length = 567
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/526 (49%), Positives = 338/526 (64%), Gaps = 22/526 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K ++TRF PEPNGYLHIGHAKSI +NF LA ++ G+C+LRFDDTNP KE++EY
Sbjct: 32 DLDSGKHSSIVTRFPPEPNGYLHIGHAKSICVNFGLAKEFGGVCHLRFDDTNPAKEDQEY 91
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
+++I +KWL F W + YASDYFD L+ A LI G AYV E+ RG
Sbjct: 92 IDAIQSDVKWLGFEW---GGDVRYASDYFDQLHDWAVELIKRGKAYVCDLTPEQAKEYRG 148
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
NL EPG+NSPF R E+L+LF RM++GEFKDG VLR KI+M S N+N+RDPI+YRIR
Sbjct: 149 NLKEPGKNSPFRERSVEENLDLFARMKAGEFKDGERVLRAKIDMASPNMNLRDPILYRIR 208
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H +H++T + WCIYP YD+ H SDAIE ITHSICTLEF+ HRP Y+W L+ N
Sbjct: 209 HAHHHQTGDKWCIYPNYDFTHGQSDAIEGITHSICTLEFEGHRPLYDWFLD-----NLPV 263
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +TITSKRKL +L+++K VD WDDPRM TL G RRRGYTP SI+ F
Sbjct: 264 PAHPRQYEFSRLNLNYTITSKRKLKQLVDEKHVDAWDDPRMSTLSGFRRRGYTPASIRNF 323
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
C+ IG ++SD +++ +LE ++RDDLD APR M VL P+K++I+N+ + Q + P
Sbjct: 324 CEMIGTNRSDGVVDMSMLEFSIRDDLDRTAPRAMCVLRPLKVVITNYPEGQVEQLELP-- 381
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
+H + +R P S+ L+I+RDDFME P K Y RL P VRLR YV+
Sbjct: 382 --RHPKEDMGVRVLPFSRELYIDRDDFMEEPPKGYKRLEP------AGEVRLRGSYVIRA 433
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K+ + +VE+ C Y PD+ K KVKG IHW+ ++ E RLYDRLF
Sbjct: 434 DEAIKDADGNIVELRCSYDPDTLG--KNPEGRKVKGVIHWVPAEGSVECEVRLYDRLFRS 491
Query: 490 PYPN-IVNNKDFKLLINPNSKKVISA-YLEPNLKLIFPKKHAQFEQ 533
P P F INP S +V+S EP+L P+ QFE+
Sbjct: 492 PNPEKTEEGGSFLDNINPASLQVLSGCRAEPSLAQAQPEDRFQFER 537
>sp|Q5GWF4|SYQ_XANOR Glutamine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=glnS PE=3 SV=1
Length = 579
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/528 (46%), Positives = 344/528 (65%), Gaps = 28/528 (5%)
Query: 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWL 80
TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+ +I ++WL
Sbjct: 37 TRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEFAAAIQDDVRWL 96
Query: 81 NFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPF 140
++W +++ +ASDYF++ Y A+ LI G A+V + E++ RG L EPGR+SPF
Sbjct: 97 GYDWAQLR----HASDYFEVYYLAAQKLIRDGHAFVCDLSAEQVRQYRGTLTEPGRHSPF 152
Query: 141 YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW 200
R E+L+LF+RMR+GEF DGA LR KI+M S NIN+RDP +YRI+HV H T N W
Sbjct: 153 RERSVEENLDLFQRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAW 212
Query: 201 CIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF--IKRPF------ 252
IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D + +P
Sbjct: 213 PIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLVGHPELLQPLLDKGLP 272
Query: 253 -----PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+RRRGYTP +++
Sbjct: 273 REAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGLRRRGYTPAAMR 332
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LF +R+G+SK +S I+ +LE LR+DLD A R MAV++P+KL+++N E
Sbjct: 333 LFVERVGISKQNSLIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNL---PEGHTETL 389
Query: 368 LFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
FS R P +++LWIER+DF E+P K + RL P G +RLR +
Sbjct: 390 QFSNHPKDESFGTREVPFARVLWIEREDFAEVPPKGWKRLVP------GGEIRLRGAGIA 443
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
KN + ++V + P+S+ G + +N KVKG IHW+S +HA+ E RLYDRLF
Sbjct: 444 RVDEVIKNADGDIVALRGWLDPESRPGME-GANRKVKGTIHWVSAAHAVEAEIRLYDRLF 502
Query: 488 IDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
P+ + K ++ +NP SK+ + Y+EP+ L P++ QFE+
Sbjct: 503 SVEKPDDESEGKTYRDYLNPESKRNVRGYVEPSAALAAPEQAFQFERT 550
>sp|Q2NZL7|SYQ_XANOM Glutamine--tRNA ligase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=glnS PE=3 SV=1
Length = 579
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/528 (46%), Positives = 344/528 (65%), Gaps = 28/528 (5%)
Query: 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWL 80
TRF PEPNGYLHIGHAK+I ++F LA ++ GLCNLR DDTNP KE+ E+ +I ++WL
Sbjct: 37 TRFPPEPNGYLHIGHAKAICLDFGLAAEFGGLCNLRLDDTNPAKEDPEFAAAIQDDVRWL 96
Query: 81 NFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPF 140
++W +++ +ASDYF++ Y A+ LI G A+V + E++ RG L EPGR+SPF
Sbjct: 97 GYDWAQLR----HASDYFEVYYLAAQKLIRDGHAFVCDLSAEQVRQYRGTLTEPGRHSPF 152
Query: 141 YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW 200
R E+L+LF+RMR+GEF DGA LR KI+M S NIN+RDP +YRI+HV H T N W
Sbjct: 153 RERSVEENLDLFQRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAW 212
Query: 201 CIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF--IKRPF------ 252
IYPMYD+AH + DA+E ITHS+CTLEF+DHRP Y+W ++K+D + +P
Sbjct: 213 PIYPMYDFAHSLGDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLVGHPELLQPLLDKGLP 272
Query: 253 -----PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EFSRLN+ +T+ SKRKL L+E+++VDGWDDPRM TL G+RRRGYTP +++
Sbjct: 273 REAAKPRQIEFSRLNINYTVMSKRKLTALVEEQLVDGWDDPRMYTLQGLRRRGYTPAAMR 332
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAP 367
LF +R+G+SK +S I+ +LE LR+DLD A R MAV++P+KL+++N E
Sbjct: 333 LFVERVGISKQNSLIDFSVLEGCLREDLDAAAARRMAVIDPLKLVLTNL---PEGHTETL 389
Query: 368 LFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
FS R P +++LWIER+DF E+P K + RL P G +RLR +
Sbjct: 390 QFSNHPKDESFGTREVPFARVLWIEREDFAEVPPKGWKRLVP------GGEIRLRGAGIA 443
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
KN + ++V + P+S+ G + +N KVKG IHW+S +HA+ E RLYDRLF
Sbjct: 444 RVDEVIKNADGDIVALRGWLDPESRPGME-GANRKVKGTIHWVSAAHAVEAEIRLYDRLF 502
Query: 488 IDPYPNIVN-NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
P+ + K ++ +NP SK+ + Y+EP+ L P++ QFE+
Sbjct: 503 SVEKPDDESEGKTYRDYLNPESKRNVRGYVEPSAALAAPEQAFQFERT 550
>sp|Q188C8|SYQ_CLOD6 Glutamine--tRNA ligase OS=Clostridium difficile (strain 630)
GN=glnS PE=3 SV=1
Length = 554
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 265/532 (49%), Positives = 353/532 (66%), Gaps = 29/532 (5%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
I D K +ITRF PEPNGYLHIGHAKSI +NF LA ++NG NLRFDDTNPLKE+
Sbjct: 16 INDLETGKHDSIITRFPPEPNGYLHIGHAKSICLNFGLAKEFNGKANLRFDDTNPLKEDV 75
Query: 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYIN 127
EYV SI + +KWL F+W+++ +AS+YFD +YK A LI G AYV EE+
Sbjct: 76 EYVESIKEDVKWLGFDWNELN----FASNYFDEMYKRALILIKKGKAYVCDLTQEEMREY 131
Query: 128 RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYR 187
RG L EPG+ SP NR E+L+LF RM++GEFKDG LR KI+M S NIN+RDPIIYR
Sbjct: 132 RGTLTEPGKESPHRNRTIEENLDLFERMKNGEFKDGEKTLRAKIDMSSPNINLRDPIIYR 191
Query: 188 IRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
I H H+ T + WCIYPMY +AHPI DAIE ITHSICTLEF+D RP Y+W + + + N
Sbjct: 192 ISHSTHHNTGDKWCIYPMYAFAHPIEDAIEGITHSICTLEFEDQRPLYDWFVKECEMEN- 250
Query: 248 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
P+Q EF+RLN+ +T+ SKRKL +L+++ IVDGWDDPR+PT+ G+RR+GYT E+++
Sbjct: 251 ----IPRQIEFARLNINNTVMSKRKLKQLVDEGIVDGWDDPRVPTISGIRRKGYTAEALR 306
Query: 308 LFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQ----EIE 363
FC IGVSK +S ++ ++L+ LR++L KAP M VL P+KLII+N+ +++ EIE
Sbjct: 307 NFCSEIGVSKVNSTVDSQMLDYFLRENLQPKAPLTMGVLRPLKLIITNYPEDKIEMLEIE 366
Query: 364 CTAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRY 423
A + +Q K R P S+ L+IE+DDFME P KKYFR +P GN VRL+
Sbjct: 367 NNA----KDESQGK---RLVPFSRELYIEQDDFMEEPVKKYFRFFP------GNEVRLKG 413
Query: 424 GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLY 483
Y V+CT K++N VVE++ Y P++KSG+ + KVK IHW+ A+ E RL+
Sbjct: 414 AYFVKCTDVIKDENGNVVEIHGTYDPETKSGSGFTGR-KVKSTIHWVDAKSAIPCEFRLF 472
Query: 484 DRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPN-LKLIFPKKHAQFEQN 534
+ L +D P K F INPNS +++ ++EP +K P QF +N
Sbjct: 473 EPLILDDIPE-NEGKHFLEQINPNSLEILQGFVEPTQIKDAKPFDKFQFVRN 523
>sp|Q9PDP1|SYQ_XYLFA Glutamine--tRNA ligase OS=Xylella fastidiosa (strain 9a5c) GN=glnS
PE=3 SV=1
Length = 580
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/530 (46%), Positives = 341/530 (64%), Gaps = 28/530 (5%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+ TRF PEPNGYLHIGHAK+I ++F +A ++ G C LR DDTNP KE+ + +I +
Sbjct: 34 HIRTRFPPEPNGYLHIGHAKAICLDFGVAAEFGGHCTLRMDDTNPSKEDPAFAAAIQDDV 93
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
WL F+W+ ++ + SDYF++LY AE LI G AYV N+E++ RG L E GR
Sbjct: 94 SWLGFHWNALR----HTSDYFEVLYLAAEKLITDGKAYVCDLNSEQVREYRGTLTEAGRP 149
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
SP+ R P E+L LFR+MR+G F DG LR KI+M S NIN+RDP +YRI+HV H T
Sbjct: 150 SPWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPALYRIKHVEHQNTG 209
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN----------- 246
N W IYPMYD+AH +SDAIE ITHS+CTLEF+DHRP Y+W +N +D N
Sbjct: 210 NTWPIYPMYDFAHALSDAIEGITHSLCTLEFEDHRPLYDWCVNHVDLPNNSHLLKPLLDK 269
Query: 247 -FIKRPF-PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPE 304
F + P P+Q EFSRLN+ +T+ SKRKL L+++K+V+GWDDPRM TL G+RRRGYTP
Sbjct: 270 GFPQEPSQPRQIEFSRLNINYTVMSKRKLTALVDEKLVEGWDDPRMYTLQGLRRRGYTPA 329
Query: 305 SIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIEC 364
+++LF +RIG+SK +S I+ +LE LR++LD APR MA + P+KL+++N ++ E +
Sbjct: 330 AMRLFVERIGISKQNSIIDFSVLENCLRENLDTIAPRRMATIAPLKLVLTNLPEDHEEQL 389
Query: 365 TAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYG 424
P + TQ R P S+ LWIERDDF EIP K + RL P G VRLR
Sbjct: 390 IFPNHPKDDTQ---GTRTMPFSRELWIERDDFSEIPPKGWKRLVP------GGEVRLRGA 440
Query: 425 YVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYD 484
+ KN +++ ++ P S+ G + ++ KVKG IHW+S HA++ E RLYD
Sbjct: 441 GIARVDEVVKNAAGDIIALHGWLDPTSRPGME-GAHRKVKGTIHWVSAPHAVAAEIRLYD 499
Query: 485 RLFIDPYPNI-VNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
RLF P+ + K ++ ++NP+SK+V+ Y+EP P+ QFE+
Sbjct: 500 RLFSVEKPDDNTDGKTYRDVLNPDSKRVVHGYIEPAAAQTAPEHAFQFER 549
>sp|Q4QK64|SYQ_HAEI8 Glutamine--tRNA ligase OS=Haemophilus influenzae (strain 86-028NP)
GN=glnS PE=3 SV=1
Length = 557
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/525 (49%), Positives = 342/525 (65%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF LA +Y GLCNLRFDDTNP+KE+ EY
Sbjct: 27 DLASGKHKSVHTRFPPEPNGYLHIGHAKSICLNFGLAKEYQGLCNLRFDDTNPVKEDVEY 86
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F W+ + YASDYFD LY A LI G AYVD + +E+ RG
Sbjct: 87 VDSIKADVEWLGFKWEGEPR---YASDYFDALYGYAAELIKKGLAYVDELSPDEMREYRG 143
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+NSP+ +R E+L LF +M++GEF +G LR KI+M S + MRDP+IYRI+
Sbjct: 144 TLTEPGKNSPYRDRTIEENLALFEKMKNGEFAEGKASLRAKIDMASPFMVMRDPVIYRIK 203
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+H++T + WCIYPMYD+ H ISDAIE ITHSICTLEFQD+R Y+W+L I I+
Sbjct: 204 FASHHQTGDKWCIYPMYDFTHCISDAIERITHSICTLEFQDNRRLYDWVLENIS----IE 259
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
RP P QYEFSRLNL T+TSKRKLLKL+ +IVDGW+DPRMPT+ G+RRRGYTP S++ F
Sbjct: 260 RPLPHQYEFSRLNLEGTLTSKRKLLKLVNDEIVDGWNDPRMPTISGLRRRGYTPASLREF 319
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
C+RIGV+K D+ + LE +R+DL+ APR MAV++P++++I NF E A L
Sbjct: 320 CRRIGVTKQDNVVEYSALEACIREDLNENAPRAMAVIDPVRVVIENF------ESEAVLT 373
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
+ H E R P +K L+I+R DF E K+Y RL G VRLR YV++
Sbjct: 374 APNHPNRPELGERQLPFTKELYIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 427
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ N E+ ++C Y P++ G + KVKG IHW+S + E RLYDRLF
Sbjct: 428 AERVEKDANGEITTIFCTYDPET-LGKNPADGRKVKGVIHWVSAVNNHPAEFRLYDRLFT 486
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + D + ++NPNS + ++E +L +K QFE+
Sbjct: 487 VPNPGAED--DIESVLNPNSLVIKQGFVEQSLANAEAEKGYQFER 529
>sp|B0U6D0|SYQ_XYLFM Glutamine--tRNA ligase OS=Xylella fastidiosa (strain M12) GN=glnS
PE=3 SV=1
Length = 580
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 341/530 (64%), Gaps = 28/530 (5%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+ TRF PEPNGYLHIGHAK+I ++F +A ++ G C LR DDTNP KE+ + +I + +
Sbjct: 34 HIHTRFPPEPNGYLHIGHAKAICLDFGVAAEFGGHCTLRMDDTNPSKEDPAFAAAIQEDV 93
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
WL F+W+ ++ + SDYF++LY AE LI G AYV N+E++ RG L E GR
Sbjct: 94 SWLGFHWNALR----HTSDYFEVLYLAAEKLIADGKAYVCDLNSEQVREYRGTLTEAGRP 149
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
SP+ R P E+L LFR+MR+G F DG LR KI+M S NIN+RDP +YRI+HV H T
Sbjct: 150 SPWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPALYRIKHVEHQNTG 209
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN----------- 246
N W IYPMYD+AH +SDAIE ITHS+CTLEF+DHRP Y+W +N +D N
Sbjct: 210 NTWPIYPMYDFAHALSDAIEGITHSLCTLEFEDHRPLYDWCINHVDLPNNSHLLKPLLDK 269
Query: 247 -FIKRPF-PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPE 304
F + P P+Q EFSRLN+ +T+ SKRKL L+++K+V+GWDDPRM TL G+RRRGYTP
Sbjct: 270 GFPQEPSQPRQIEFSRLNINYTVMSKRKLTALVDEKLVEGWDDPRMYTLQGLRRRGYTPA 329
Query: 305 SIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIEC 364
+++LF +RIG+SK +S I+ +LE LR++LD APR MA + P+KL+++N ++ E +
Sbjct: 330 AMRLFVERIGISKQNSIIDFSVLENCLRENLDTIAPRRMATIAPMKLVLTNLPEDHEEQL 389
Query: 365 TAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYG 424
P + TQ R P S+ LWIERDDF E+P K + RL P G VRLR
Sbjct: 390 IFPNHPKDDTQ---GTRTVPFSRELWIERDDFSEVPPKGWKRLVP------GGEVRLRGA 440
Query: 425 YVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYD 484
+ KN ++ ++ P S+ G + ++ KVKG IHW+S HA++ E RLYD
Sbjct: 441 GIARIDEVVKNAEGHIIALHGWLDPTSRPGME-GAHRKVKGTIHWVSAPHAVAAEIRLYD 499
Query: 485 RLF-IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
RLF I+ + + K ++ +NP+SK+V+ Y+EP P+ QFE+
Sbjct: 500 RLFSIEKPDDNTDGKTYRDFLNPDSKRVVHGYIEPAAAQTAPEHAFQFER 549
>sp|B4EV71|SYQ_PROMH Glutamine--tRNA ligase OS=Proteus mirabilis (strain HI4320) GN=glnS
PE=3 SV=1
Length = 555
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/516 (50%), Positives = 341/516 (66%), Gaps = 23/516 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY+NSI K ++
Sbjct: 28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGKCNLRFDDTNPVKEDVEYINSIQKDVQ 87
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL F WD ++Y+SDYFD LY+ A LI G AYVD + EEI RG L EPG+NS
Sbjct: 88 WLGFQWDG---NVHYSSDYFDQLYQYAIELINKGLAYVDELSAEEIREYRGTLKEPGKNS 144
Query: 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNN 198
P+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+ H++T N
Sbjct: 145 PYRSRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGN 204
Query: 199 NWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEF 258
WCIYPMYD+ H ISDA+ENITHS+CTLEFQD+R Y+W+L+ N P+QYEF
Sbjct: 205 KWCIYPMYDFTHCISDALENITHSLCTLEFQDNRRLYDWVLD-----NITIPCHPRQYEF 259
Query: 259 SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318
SRLNL +T+ SKRKL +L+ + IVDGWDDPRMPT+ G+RRRGYT ESI+ FC+RIGV+K
Sbjct: 260 SRLNLEYTVMSKRKLNQLVTENIVDGWDDPRMPTISGLRRRGYTAESIREFCQRIGVTKQ 319
Query: 319 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE 378
D+ + + LE +RDDL+ APR MAV++P++L+I N + +EI TAP H E
Sbjct: 320 DNNVEMASLEACIRDDLNENAPRAMAVIDPVRLVIENMPEGEEI-LTAP----NHPNKPE 374
Query: 379 -KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKN 437
R P S+ ++I+R DF E ++Y RL G VRLR YV++ +K++
Sbjct: 375 MGTREVPFSREIYIDRADFKEEANRQYKRLV------LGKEVRLRNAYVIKAERVEKDEQ 428
Query: 438 NEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNN 497
E+ +YC Y P + + + KVKG IHW+S HA+ E RLYDRLF P P
Sbjct: 429 GEITTIYCTYDPQTLNKDP-ADGRKVKGVIHWVSIPHAIPAEIRLYDRLFSVPNPGA--E 485
Query: 498 KDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+DF INP S + ++E +LK +K QFE+
Sbjct: 486 EDFLSTINPESLVIRQGFVEASLKDAAIEKAYQFER 521
>sp|Q3SRI8|SYQ_NITWN Glutamine--tRNA ligase OS=Nitrobacter winogradskyi (strain Nb-255 /
ATCC 25391) GN=glnS PE=3 SV=1
Length = 559
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 245/517 (47%), Positives = 339/517 (65%), Gaps = 22/517 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
++TRF PEPNGYLH+GHAKSI +NF +A + G C+LRFDDTNP KE +E++++I + ++
Sbjct: 30 IVTRFPPEPNGYLHLGHAKSICLNFGIAEDFGGRCHLRFDDTNPAKEEQEFIDAIQRDVR 89
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL F+W + +YYASDYF+ LY A++LI G AYVD Q EEI + RG L EPGRNS
Sbjct: 90 WLGFDW---GEHLYYASDYFEQLYAWAQHLIREGKAYVDDQTQEEIRLARGTLTEPGRNS 146
Query: 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNN 198
PF +R E+L+LF RMR+GEF +GA VLR KI+M + NIN+RDP++YRI H H RT N
Sbjct: 147 PFRDRPADENLDLFARMRAGEFPNGARVLRAKIDMAAGNINLRDPVLYRILHATHPRTGN 206
Query: 199 NWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEF 258
W IYP YD+AH SD+IE+ITHS+CTLEF+DHRP Y+W L+ N P+QYEF
Sbjct: 207 VWSIYPSYDFAHGQSDSIEHITHSVCTLEFEDHRPLYDWFLD-----NLPVPSRPRQYEF 261
Query: 259 SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318
+RLN+THT+ SKR L +L+ V GWDDPRMPTL G++RRG E+++ F KRIGV+K+
Sbjct: 262 ARLNVTHTLLSKRVLTELVRGGHVAGWDDPRMPTLAGLQRRGVPAEALREFVKRIGVAKA 321
Query: 319 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE 378
+S +++ +L+ A+R+ L+ A R MAVL P+K++I N+ + Q E A +Q
Sbjct: 322 NSTVDVGMLDFAIREALNRSASRRMAVLRPLKVVIENYPEGQSEELEAVNHPDDPSQGTR 381
Query: 379 KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNN 438
++R+ + ++IE++DFME P KK+FRL P G VRLRY Y + C KN
Sbjct: 382 RIRF---GREIYIEQEDFMENPPKKFFRLSP------GREVRLRYAYFITCREVVKNPAG 432
Query: 439 EVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNK 498
+V+E+ C Y P ++ G KVK +HW++ + A+ E RLY LF P+ N
Sbjct: 433 DVLELRCTYDPATRGGNA-PDGRKVKATMHWVNTADAVPAEVRLYGHLFETEQPDAAN-- 489
Query: 499 DFKLLINPNSKKVISA-YLEPNLKLIFPKKHAQFEQN 534
F +NP S +++S +EP L QFE+
Sbjct: 490 -FASELNPQSVQILSGCMVEPALARDDAGAAVQFERQ 525
>sp|Q87DU6|SYQ_XYLFT Glutamine--tRNA ligase OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=glnS PE=3 SV=1
Length = 580
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 340/530 (64%), Gaps = 28/530 (5%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
+ TRF PEPNGYLHIGHAK+I ++F +A ++ G C LR DDTNP KE+ + +I + +
Sbjct: 34 HIHTRFPPEPNGYLHIGHAKAICLDFGVAAEFGGHCTLRMDDTNPSKEDPAFAAAIQEDV 93
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
WL F+W+ ++ + SDYF++LY AE LI G AYV N++++ RG L E GR
Sbjct: 94 SWLGFHWNALR----HTSDYFEVLYLAAEKLIADGKAYVCDLNSQQVREYRGTLTEAGRP 149
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
SP+ R P E+L LFR+MR+G F DG LR KI+M S NIN+RDP +YRI+HV H T
Sbjct: 150 SPWRERSPDENLELFRQMRAGTFPDGTRTLRAKIDMASGNINLRDPALYRIKHVEHQNTG 209
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN----------- 246
N W IYPMYD+AH +SDAIE ITHS+CTLEF+DHRP Y+W +N +D N
Sbjct: 210 NTWPIYPMYDFAHALSDAIEGITHSLCTLEFEDHRPLYDWCINHVDLPNNSHLLKPLLDK 269
Query: 247 -FIKRPF-PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPE 304
F + P P+Q EFSRLN+ +T+ SKRKL L+++K+V+GWDDPRM TL G+RRRGYTP
Sbjct: 270 GFPQEPSQPRQIEFSRLNINYTVMSKRKLTALVDEKLVEGWDDPRMYTLQGLRRRGYTPA 329
Query: 305 SIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIEC 364
+++LF +RIG+SK +S I+ +LE LR++LD APR MA + P+KL+++N ++ E +
Sbjct: 330 AMRLFVERIGISKQNSIIDFSVLENCLRENLDTIAPRRMATIAPMKLVLTNLAEDHEEQL 389
Query: 365 TAPLFSRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYG 424
P + TQ R P S+ LWIERDDF E P K + RL P G VRLR
Sbjct: 390 IFPNHPKDDTQ---GTRTVPFSRELWIERDDFSEAPPKGWKRLIP------GGEVRLRGA 440
Query: 425 YVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYD 484
+ KN V+ ++ P S+ G + ++ KVKG IHW+S HA++ E RLYD
Sbjct: 441 GIARIDEVVKNAEGHVIALHGWLDPTSRPGME-GAHRKVKGTIHWVSAPHAVAAEIRLYD 499
Query: 485 RLF-IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
RLF I+ + + K ++ +NP+SK+V+ Y+EP P+ QFE+
Sbjct: 500 RLFSIEKPDDNTDGKTYRDFLNPDSKRVVHGYIEPAAAQTAPEHAFQFER 549
>sp|P43831|SYQ_HAEIN Glutamine--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=glnS PE=3 SV=1
Length = 557
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/525 (49%), Positives = 342/525 (65%), Gaps = 23/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF LA +Y GLCNLRFDDTNP+KE+ EY
Sbjct: 27 DLASGKHKSVHTRFPPEPNGYLHIGHAKSICLNFGLAKEYQGLCNLRFDDTNPVKEDVEY 86
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F W+ + YASDYFD LY A LI G AYVD + +E+ RG
Sbjct: 87 VDSIKADVEWLGFKWEGEPR---YASDYFDALYGYAVELIKKGLAYVDELSPDEMREYRG 143
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+NSP+ +R E+L LF +M++GEF +G LR KI+M S + MR+P+IYRI+
Sbjct: 144 TLTEPGKNSPYRDRTIEENLALFEKMKNGEFAEGKASLRAKIDMASPFMVMREPVIYRIK 203
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
+H++T + WCIYPMYD+ H ISDAIE ITHSICTLEFQD+R Y+W+L I I+
Sbjct: 204 FSSHHQTGDKWCIYPMYDFTHCISDAIERITHSICTLEFQDNRRLYDWVLENIS----IE 259
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
RP P QYEFSRLNL T+TSKRKLLKL+ +IVDGW+DPRMPT+ G+RRRGYTP S++ F
Sbjct: 260 RPLPHQYEFSRLNLEGTLTSKRKLLKLVNDEIVDGWNDPRMPTISGLRRRGYTPASLREF 319
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
C+RIGV+K D+ + LE +R+DL+ APR MAV++P++++I NF E A L
Sbjct: 320 CRRIGVTKQDNVVEYSALEACIREDLNENAPRAMAVIDPVRVVIENF------ESEAVLT 373
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
+ H E R P +K L+I+R DF E K+Y RL G VRLR YV++
Sbjct: 374 APNHPNRPELGERQLPFTKELYIDRADFREEANKQYKRLV------LGKEVRLRNAYVIK 427
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ N E+ ++C Y P++ G + KVKG IHW+S + E RLYDRLF
Sbjct: 428 AERVEKDANGEITTIFCTYDPET-LGKNPADGRKVKGVIHWVSAVNNHPAEFRLYDRLFT 486
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P + D + ++NPNS + ++E +L +K QFE+
Sbjct: 487 VPNPGAED--DIESVLNPNSLVIKQGFVEQSLANAEAEKGYQFER 529
>sp|Q7UX42|SYQ_RHOBA Glutamine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=glnS PE=3 SV=1
Length = 601
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/525 (48%), Positives = 339/525 (64%), Gaps = 21/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D + V TRF PEPNGYLHIGHAKSI +NF LA G CNLRFDDTNP+KE+ EY
Sbjct: 61 DLASGRFDGVATRFPPEPNGYLHIGHAKSICLNFGLAKDMGGTCNLRFDDTNPIKEDTEY 120
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI + ++WL F WD +++ASDYFD LY AE L+ G AYV EE RG
Sbjct: 121 VDSIQEDVRWLGFEWDN----LHFASDYFDQLYDWAEQLVKDGKAYVCDLTAEETREYRG 176
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+NSP +R P ++L L R M++G+FKDG LR KI+M S NIN+RDP++YRI
Sbjct: 177 TLTEPGKNSPHRDRTPEKNLELLRAMKAGKFKDGEKTLRAKIDMASPNINLRDPVMYRIA 236
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
HV H+RT + WCIYPMYD+AH SD++E IT SICTLEF+ HRP Y W + +
Sbjct: 237 HVPHHRTGDKWCIYPMYDWAHGQSDSLEKITFSICTLEFEHHRPLYNWYCENLGIHH--- 293
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+Q EF+RLN+T T+ SKRKLL+L+++ V GWDDPRMPTL+G+RRRGYTPESI+ F
Sbjct: 294 ---PRQIEFARLNMTFTVMSKRKLLQLVKENHVTGWDDPRMPTLVGLRRRGYTPESIRSF 350
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
C IGV+K +S I++ LE ++R+ L+ APR MAVL+PIKL I+N+ + + +E +
Sbjct: 351 CADIGVAKFNSTIDVIRLENSVREHLNSVAPRRMAVLDPIKLTITNWPEGK-VEMMNAIN 409
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
+ + R P S L+IE +DF E +K+FRL G VRLR GY+V+C
Sbjct: 410 NPEDESAGS--REIPFSGELYIETEDFREEAPRKFFRL------KKGGSVRLRSGYIVDC 461
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K+ + V EV C Y P++KSG +S KVKG IHW+S+ HA + R YDRLF
Sbjct: 462 HDVVKDADGNVTEVLCTYDPETKSGED-TSGRKVKGTIHWVSREHAQKVTVRNYDRLFKV 520
Query: 490 PYPNIVNNK-DFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P+ ++ F +NP+S ++A++EP L QFE+
Sbjct: 521 ENPDASSDTGSFLDHLNPDSLTTLTAHVEPALAEAAVGDRVQFER 565
>sp|Q87YQ1|SYQ_PSESM Glutamine--tRNA ligase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=glnS PE=3 SV=1
Length = 569
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/526 (48%), Positives = 343/526 (65%), Gaps = 22/526 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K ++ITRF PEPNGYLHIGHAKSI +NF LA ++ G +LRFDDTNP KE++EY
Sbjct: 35 DLDSGKHSKIITRFPPEPNGYLHIGHAKSICVNFGLAKEFGGDTHLRFDDTNPAKEDQEY 94
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
+++I+ +KWL F W + YAS YFD L+ A LI +G AYVD E+ RG
Sbjct: 95 IDAIMNDVKWLGFEW---AGEVRYASQYFDQLHDWAVELIKAGKAYVDDLTPEQAREYRG 151
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+NSPF R E+++LF RM++GEF+DGA VLR KI+M S N+N+RDPI+YRIR
Sbjct: 152 TLTEPGKNSPFRERSVEENIDLFARMKAGEFEDGARVLRAKIDMASPNMNLRDPILYRIR 211
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H +H++T + WCIYP+YD+ H SDAIE ITHSICTLEF+ HRP Y+W L+ N
Sbjct: 212 HAHHHQTGDKWCIYPIYDFTHGQSDAIEGITHSICTLEFESHRPLYDWFLD-----NLPV 266
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +TITSKRKL +L+++K V+GWDDPRM TL G RRRGYTP+SI+ F
Sbjct: 267 PCKPRQYEFSRLNLNYTITSKRKLKQLVDEKHVNGWDDPRMSTLSGFRRRGYTPKSIRNF 326
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
C+ IG ++SD ++ +LE ++RDDLD APR M VL P+K++I+N+ + Q + P
Sbjct: 327 CEMIGTNRSDGVVDFGMLEFSIRDDLDHSAPRAMCVLRPLKVVITNYPEGQVEKLELP-- 384
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
+H + +R P S+ ++I+RDD+ME P K Y RL P VRLR YV+
Sbjct: 385 --RHPKEDLGMRELPFSREIYIDRDDYMEEPPKGYKRLEP------NGEVRLRGSYVIRA 436
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
K+ + +VE+ C Y PD+ K KVKG +HW+ + ++ E RLYDRLF
Sbjct: 437 DEAIKDADGNIVELRCSYDPDTLG--KNPEGRKVKGVVHWVPAAESVECEVRLYDRLFRS 494
Query: 490 PYPNIV-NNKDFKLLINPNSKKVISA-YLEPNLKLIFPKKHAQFEQ 533
P + F INP+S +V++ EP+L P+ QFE+
Sbjct: 495 ANPEKAEDGASFLDNINPDSLQVLTGCRAEPSLGHAQPEDRFQFER 540
>sp|A6VP11|SYQ_ACTSZ Glutamine--tRNA ligase OS=Actinobacillus succinogenes (strain ATCC
55618 / 130Z) GN=glnS PE=3 SV=1
Length = 559
Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/516 (50%), Positives = 335/516 (64%), Gaps = 23/516 (4%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V TRF PEPNGYLHIGHAKSI +NF +A Y+G CNLRFDDTNP+KE+ EYV+SI + ++
Sbjct: 38 VYTRFPPEPNGYLHIGHAKSICLNFGIAQDYHGKCNLRFDDTNPVKEDVEYVDSIKQDVE 97
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL FNW+ + YASDYFD LY A LI G AYVD + EE+ RG L E G+NS
Sbjct: 98 WLGFNWEGEPR---YASDYFDQLYGYAVELIEKGLAYVDELSPEEMREYRGTLTEAGKNS 154
Query: 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNN 198
P+ R +E+L LF +MR+GEF +G LR KI+M S + MRDP+IYR++ +H++T +
Sbjct: 155 PYRERSVAENLALFEKMRNGEFAEGKACLRAKIDMASPFMVMRDPVIYRVKFASHHQTGD 214
Query: 199 NWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEF 258
WCIYPMYD+ H ISDAIE ITHS+CTLEFQD+R Y+W+L I I+RP P QYEF
Sbjct: 215 KWCIYPMYDFTHCISDAIERITHSLCTLEFQDNRRLYDWVLEHIS----IERPLPHQYEF 270
Query: 259 SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318
SRLNL T+TSKRKLLKL+E+ VDGWDDPRMPT+ G+RRRGYTP S++ FC+RIGV+K
Sbjct: 271 SRLNLEGTLTSKRKLLKLVEEGAVDGWDDPRMPTISGLRRRGYTPASLREFCRRIGVTKQ 330
Query: 319 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE 378
D+ + LE +RDDL+I APR MAV+NP+K+II NF E L H +E
Sbjct: 331 DNVVEFSALESCIRDDLNINAPRAMAVINPLKVIIENF------ETPETLTMPNHPNREE 384
Query: 379 -KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKN 437
R ++K L+I++ DF E K+Y RL G VRLR Y+++ +K+
Sbjct: 385 MGTRQVQLTKELYIDQADFREEANKQYKRLV------LGKEVRLRNAYIIKAERVEKDAE 438
Query: 438 NEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNN 497
+V VYC Y P++ G S KVKG I W+S + L E R Y RLF P P +
Sbjct: 439 GNIVCVYCSYDPETL-GKNPSDGRKVKGVIQWVSATDCLPAEFRQYSRLFTMPNPG--SE 495
Query: 498 KDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
+D INP S V ++E ++ +K QFE+
Sbjct: 496 EDIIAAINPQSLVVRQGFVERSVANALSEKAYQFER 531
>sp|C3LTP5|SYQ_VIBCM Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=glnS PE=3 SV=1
Length = 556
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/526 (48%), Positives = 333/526 (63%), Gaps = 24/526 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP KEN EY
Sbjct: 19 DLADGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPEKENLEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI K + WL F+W + Y+SDYFD LY+ A LI G AYVD E+I RG
Sbjct: 79 VESIKKDVTWLGFDW---SGEVCYSSDYFDKLYEYAIELIQKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG++SP+ +R E+L LF +MR+GEF +G LR KI+M S I MRDP++YR+R
Sbjct: 136 TLTEPGKHSPYRDRSVEENLALFEKMRAGEFAEGQACLRAKIDMASSFIVMRDPVLYRVR 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T + WCIYPMYD+ H ISDA+E ITHSICTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGDKWCIYPMYDFTHCISDALEGITHSICTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL +L+ +K+V GWDDPRMPT+ G+RRRG+TP +I+ F
Sbjct: 251 PCHPRQYEFSRLNLEYTVMSKRKLNQLVTEKLVTGWDDPRMPTISGLRRRGFTPSAIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K ++ I LE +RDDL+ APR MAVL+P+KL+I NF T
Sbjct: 311 CKRIGVTKQENMIEYSALESCIRDDLNENAPRAMAVLDPVKLVIENFAAG-----TVETL 365
Query: 370 SRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
+ + K ++ R P ++ LWIER+DF E KKY RL G VRLR YV+
Sbjct: 366 TLANHPNKPEMGDREVPFTRELWIEREDFREEANKKYKRLV------LGKEVRLRGAYVI 419
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
+ +K++ + ++C Y P++ G + KVKG IHW+S + E RLY+RLF
Sbjct: 420 KAERIEKDEQGNITTIFCSYDPET-LGKNPADGRKVKGVIHWVSAEKGVPAEFRLYERLF 478
Query: 488 IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +N F INP S + Y+EP+L P+ QFE+
Sbjct: 479 TVPNPGAADN--FAETINPESLVKVQGYVEPSLVEAKPEFGYQFER 522
>sp|Q9KTA6|SYQ_VIBCH Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=glnS PE=3 SV=1
Length = 556
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/526 (48%), Positives = 333/526 (63%), Gaps = 24/526 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP KEN EY
Sbjct: 19 DLADGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPEKENLEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI K + WL F+W + Y+SDYFD LY+ A LI G AYVD E+I RG
Sbjct: 79 VESIKKDVTWLGFDW---SGEVCYSSDYFDKLYEYAIELIQKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG++SP+ +R E+L LF +MR+GEF +G LR KI+M S I MRDP++YR+R
Sbjct: 136 TLTEPGKHSPYRDRSVEENLALFEKMRAGEFAEGQACLRAKIDMASSFIVMRDPVLYRVR 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T + WCIYPMYD+ H ISDA+E ITHSICTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGDKWCIYPMYDFTHCISDALEGITHSICTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL +L+ +K+V GWDDPRMPT+ G+RRRG+TP +I+ F
Sbjct: 251 PCHPRQYEFSRLNLEYTVMSKRKLNQLVTEKLVTGWDDPRMPTISGLRRRGFTPSAIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K ++ I LE +RDDL+ APR MAVL+P+KL+I NF T
Sbjct: 311 CKRIGVTKQENMIEYSALESCIRDDLNENAPRAMAVLDPVKLVIENFAAG-----TVETL 365
Query: 370 SRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
+ + K ++ R P ++ LWIER+DF E KKY RL G VRLR YV+
Sbjct: 366 TLANHPNKPEMGDREVPFTRELWIEREDFREEANKKYKRLV------LGKEVRLRGAYVI 419
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
+ +K++ + ++C Y P++ G + KVKG IHW+S + E RLY+RLF
Sbjct: 420 KAERIEKDEQGNITTIFCSYDPET-LGKNPADGRKVKGVIHWVSAEKGVPAEFRLYERLF 478
Query: 488 IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +N F INP S + Y+EP+L P+ QFE+
Sbjct: 479 TVPNPGAADN--FAETINPESLVKVQGYVEPSLVEAKPEFGYQFER 522
>sp|A5F2T1|SYQ_VIBC3 Glutamine--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=glnS PE=3 SV=1
Length = 556
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/526 (48%), Positives = 333/526 (63%), Gaps = 24/526 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP KEN EY
Sbjct: 19 DLADGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPEKENLEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI K + WL F+W + Y+SDYFD LY+ A LI G AYVD E+I RG
Sbjct: 79 VESIKKDVTWLGFDW---SGEVCYSSDYFDKLYEYAIELIQKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG++SP+ +R E+L LF +MR+GEF +G LR KI+M S I MRDP++YR+R
Sbjct: 136 TLTEPGKHSPYRDRSVEENLALFEKMRAGEFAEGQACLRAKIDMASSFIVMRDPVLYRVR 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T + WCIYPMYD+ H ISDA+E ITHSICTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGDKWCIYPMYDFTHCISDALEGITHSICTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL +L+ +K+V GWDDPRMPT+ G+RRRG+TP +I+ F
Sbjct: 251 PCHPRQYEFSRLNLEYTVMSKRKLNQLVTEKLVTGWDDPRMPTISGLRRRGFTPSAIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K ++ I LE +RDDL+ APR MAVL+P+KL+I NF T
Sbjct: 311 CKRIGVTKQENMIEYSALESCIRDDLNENAPRAMAVLDPVKLVIENFAAG-----TVETL 365
Query: 370 SRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVV 427
+ + K ++ R P ++ LWIER+DF E KKY RL G VRLR YV+
Sbjct: 366 TLANHPNKPEMGDREVPFTRELWIEREDFREEANKKYKRLV------LGKEVRLRGAYVI 419
Query: 428 ECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLF 487
+ +K++ + ++C Y P++ G + KVKG IHW+S + E RLY+RLF
Sbjct: 420 KAERIEKDEQGNITTIFCSYDPET-LGKNPADGRKVKGVIHWVSAEKGVPAEFRLYERLF 478
Query: 488 IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +N F INP S + Y+EP+L P+ QFE+
Sbjct: 479 TVPNPGAADN--FAETINPESLVKVQGYVEPSLVEAKPEFGYQFER 522
>sp|A8AJD6|SYQ_CITK8 Glutamine--tRNA ligase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=glnS PE=3 SV=1
Length = 555
Score = 492 bits (1267), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/525 (49%), Positives = 332/525 (63%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K + TRF PEPNGYLHIGHAKSI +NF +A Y GLCNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTIHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGLCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W + Y+SDYFD L+ A LI G AYVD ++I RG
Sbjct: 79 VDSIKNDVEWLGFHW---AGNVCYSSDYFDQLHAYAVELITKGLAYVDELTPDQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLKEPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YVV+
Sbjct: 369 --NHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVVK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFS 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+L+ K QFE+
Sbjct: 480 VPNPGAA--EDFLSVINPESLVIKQGYAEPSLQNAVAGKAYQFER 522
>sp|Q87RG4|SYQ_VIBPA Glutamine--tRNA ligase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=glnS PE=3 SV=1
Length = 556
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/525 (49%), Positives = 334/525 (63%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP KE+ EY
Sbjct: 19 DLADGKHTSVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPEKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI K + WL F WD + Y+S+YFD LY+ A LI G AYVD + E+I RG
Sbjct: 79 VESIKKDVNWLGFEWDG---EVCYSSNYFDKLYEYAIELINKGLAYVDELSPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L EPG+ SP+ +R E+L LF +MR+GEF++G LR KI+M S + MRDP++YR+R
Sbjct: 136 TLKEPGKPSPYRDRSVEENLALFEKMRAGEFEEGKACLRAKIDMGSSFMVMRDPVLYRVR 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T + WCIYPMYD+ H ISDA+E ITHSICTLEF D+R Y+W+L+ N
Sbjct: 196 FATHHQTGDKWCIYPMYDFTHCISDALEGITHSICTLEFMDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P QYEFSRLNL +T+ SKRKL +L+ +K+V+GWDDPRMPT+ G+RRRG+TP SI+ F
Sbjct: 251 DCRPHQYEFSRLNLEYTVMSKRKLNQLVTEKLVNGWDDPRMPTVSGLRRRGFTPASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K ++ I LE +RDDL+ APR MAVL+P+K++I NF E+ L
Sbjct: 311 CKRIGVTKQENMIEFSSLESCIRDDLNENAPRAMAVLDPVKVVIENF----EVGAVENLT 366
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P ++ +WIER+DF E KKY RL G VRLR YV++
Sbjct: 367 LANHPNKPEMGEREVPFTREVWIEREDFREEANKKYKRLV------LGKEVRLRGAYVIK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + +YC Y P++ G + KVKG IHW+S AL E RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIYCTYDPET-LGKNPADGRKVKGVIHWVSADKALPAEIRLYDRLFT 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF IN +S VI+ ++EP+L ++ QFE+
Sbjct: 480 VPNPAAA--EDFASTINTDSLVVINGFVEPSLASAEAEQGYQFER 522
>sp|Q57RP8|SYQ_SALCH Glutamine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67)
GN=glnS PE=3 SV=1
Length = 555
Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/525 (49%), Positives = 330/525 (62%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W I Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VDSIKNDVEWLGFHW---SGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L PG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 369 --NHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVIK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL IE RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPIEIRLYDRLFS 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+LK K QFE+
Sbjct: 480 VPNPGTA--EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFER 522
>sp|A9MUG5|SYQ_SALPB Glutamine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=glnS PE=3 SV=1
Length = 555
Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/524 (49%), Positives = 330/524 (62%), Gaps = 20/524 (3%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W I Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VDSIKNDVEWLGFHW---SGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L PG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVEC 429
+ + R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 369 -NHPNKLEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVIKA 421
Query: 430 TGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFID 489
+K+ + ++C Y D+ S + KVKG IHW+S +HAL IE RLYDRLF
Sbjct: 422 ERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPIEIRLYDRLFSV 480
Query: 490 PYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+LK K QFE+
Sbjct: 481 PNPGAA--EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFER 522
>sp|Q8ZQX5|SYQ_SALTY Glutamine--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=glnS PE=3 SV=3
Length = 555
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/525 (49%), Positives = 330/525 (62%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W I Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VDSIKNDVEWLGFHW---SGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L PG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 369 --NHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVIK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL IE RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPIEIRLYDRLFS 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+LK K QFE+
Sbjct: 480 VPNPGAA--EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFER 522
>sp|B5BCC3|SYQ_SALPK Glutamine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601)
GN=glnS PE=3 SV=1
Length = 555
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/525 (49%), Positives = 330/525 (62%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W I Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VDSIKNDVEWLGFHW---SGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L PG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 369 --NHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVIK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL IE RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPIEIRLYDRLFS 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+LK K QFE+
Sbjct: 480 VPNPGAA--EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFER 522
>sp|C0PWA7|SYQ_SALPC Glutamine--tRNA ligase OS=Salmonella paratyphi C (strain RKS4594)
GN=glnS PE=3 SV=1
Length = 555
Score = 490 bits (1262), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/525 (49%), Positives = 330/525 (62%), Gaps = 22/525 (4%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 19 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEY 78
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V+SI ++WL F+W I Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 79 VDSIKNDVEWLGFHW---SGDIRYSSDYFDQLHAYAVELINKGLAYVDELTPEQIREYRG 135
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L PG+NSPF +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 136 TLTAPGKNSPFRDRSVEENLALFEKMRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 195
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 196 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 250
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 251 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 310
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLF 369
CKRIGV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P
Sbjct: 311 CKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYPQGESEMVTMP-- 368
Query: 370 SRQHTQYKE-KLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVE 428
H E R P S +WI+R DF E K+Y RL G VRLR YV++
Sbjct: 369 --NHPNKPEMGSREVPFSGEIWIDRADFREEANKQYKRLV------MGKEVRLRNAYVIK 420
Query: 429 CTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488
+K+ + ++C Y D+ S + KVKG IHW+S +HAL IE RLYDRLF
Sbjct: 421 AERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSAAHALPIEIRLYDRLFS 479
Query: 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 533
P P +DF +INP S + Y EP+LK K QFE+
Sbjct: 480 VPNPGAA--EDFLSVINPESLVIKQGYGEPSLKAAVAGKAFQFER 522
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,802,144
Number of Sequences: 539616
Number of extensions: 13080252
Number of successful extensions: 40690
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 806
Number of HSP's that attempted gapping in prelim test: 35244
Number of HSP's gapped (non-prelim): 3282
length of query: 736
length of database: 191,569,459
effective HSP length: 125
effective length of query: 611
effective length of database: 124,117,459
effective search space: 75835767449
effective search space used: 75835767449
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)