Query psy9410
Match_columns 736
No_of_seqs 601 out of 5694
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:29:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05347 glutaminyl-tRNA synth 100.0 1E-132 3E-137 1098.6 50.7 502 18-540 28-531 (554)
2 PTZ00437 glutaminyl-tRNA synth 100.0 1E-127 3E-132 1055.8 47.9 490 15-540 47-540 (574)
3 TIGR00440 glnS glutaminyl-tRNA 100.0 1E-127 3E-132 1058.2 46.4 498 21-540 3-501 (522)
4 PRK14703 glutaminyl-tRNA synth 100.0 3E-127 7E-132 1098.9 50.4 505 16-540 28-535 (771)
5 PLN02859 glutamine-tRNA ligase 100.0 4E-126 9E-131 1075.4 45.8 494 16-540 261-763 (788)
6 PLN03233 putative glutamate-tR 100.0 6E-124 1E-128 1027.9 45.1 478 15-540 7-490 (523)
7 PTZ00402 glutamyl-tRNA synthet 100.0 2E-121 3E-126 1016.7 47.2 485 16-540 49-537 (601)
8 PLN02907 glutamate-tRNA ligase 100.0 6E-119 1E-123 1036.1 48.3 481 17-539 211-696 (722)
9 KOG1148|consensus 100.0 5E-120 1E-124 962.5 29.2 494 15-540 244-741 (764)
10 KOG1147|consensus 100.0 2E-111 5E-116 888.4 33.4 479 17-537 198-681 (712)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 7E-109 2E-113 919.7 45.4 451 16-540 98-553 (567)
12 TIGR00463 gltX_arch glutamyl-t 100.0 1E-106 3E-111 900.4 43.7 452 17-539 91-545 (560)
13 COG0008 GlnS Glutamyl- and glu 100.0 6.8E-77 1.5E-81 652.5 14.4 446 20-537 10-469 (472)
14 KOG1149|consensus 100.0 4.2E-71 9E-76 572.7 19.1 301 5-355 23-352 (524)
15 PLN02627 glutamyl-tRNA synthet 100.0 4.1E-70 8.9E-75 601.5 24.4 293 17-355 43-364 (535)
16 cd00807 GlnRS_core catalytic c 100.0 3.3E-69 7.2E-74 540.3 22.5 236 20-341 2-238 (238)
17 PRK12410 glutamylglutaminyl-tR 100.0 1.6E-68 3.5E-73 580.6 21.5 281 21-355 2-304 (433)
18 PRK12558 glutamyl-tRNA synthet 100.0 5.4E-67 1.2E-71 571.5 22.5 286 19-355 2-310 (445)
19 cd09287 GluRS_non_core catalyt 100.0 5.2E-66 1.1E-70 519.5 22.2 237 19-341 1-240 (240)
20 PRK01406 gltX glutamyl-tRNA sy 100.0 1.4E-65 3.1E-70 571.7 23.1 291 18-355 3-321 (476)
21 PF00749 tRNA-synt_1c: tRNA sy 100.0 3.1E-66 6.8E-71 550.4 12.3 307 19-353 1-314 (314)
22 PRK14895 gltX glutamyl-tRNA sy 100.0 5.5E-65 1.2E-69 560.5 22.2 283 19-355 4-310 (513)
23 TIGR00464 gltX_bact glutamyl-t 100.0 1.5E-63 3.3E-68 555.4 23.7 288 19-355 1-312 (470)
24 PRK05710 glutamyl-Q tRNA(Asp) 100.0 3.9E-63 8.4E-68 515.8 24.8 243 19-319 5-268 (299)
25 TIGR03838 queuosine_YadB gluta 100.0 5.1E-62 1.1E-66 502.4 21.4 242 20-319 2-261 (272)
26 cd00418 GlxRS_core catalytic c 100.0 5.2E-56 1.1E-60 445.6 16.9 218 21-355 4-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 8.9E-53 1.9E-57 425.8 16.3 224 20-355 2-233 (239)
28 PF03950 tRNA-synt_1c_C: tRNA 100.0 4.6E-34 1E-38 278.1 12.7 170 339-538 1-172 (174)
29 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.5E-31 3.3E-36 288.4 15.0 265 10-332 13-316 (464)
30 PF01406 tRNA-synt_1e: tRNA sy 100.0 4.5E-31 9.7E-36 272.1 7.8 266 12-331 1-299 (300)
31 PLN02946 cysteine-tRNA ligase 100.0 7E-29 1.5E-33 278.0 12.3 265 10-332 71-371 (557)
32 PRK14536 cysS cysteinyl-tRNA s 99.9 1.4E-27 3E-32 265.1 15.3 265 10-332 14-328 (490)
33 PRK06991 ferredoxin; Provision 99.9 2.9E-27 6.3E-32 243.8 14.9 197 535-731 14-225 (270)
34 TIGR00435 cysS cysteinyl-tRNA 99.9 2.5E-27 5.4E-32 265.4 15.5 270 10-332 12-313 (465)
35 PRK12418 cysteinyl-tRNA synthe 99.9 1.1E-27 2.3E-32 258.8 10.7 268 13-332 2-310 (384)
36 PRK14535 cysS cysteinyl-tRNA s 99.9 4.1E-27 8.8E-32 264.6 15.3 272 10-331 239-555 (699)
37 PRK14534 cysS cysteinyl-tRNA s 99.9 6.1E-27 1.3E-31 258.6 14.7 261 11-331 15-327 (481)
38 PRK00260 cysS cysteinyl-tRNA s 99.9 3.4E-26 7.5E-31 256.9 17.9 264 10-333 14-315 (463)
39 TIGR03447 mycothiol_MshC cyste 99.9 5.3E-27 1.1E-31 254.4 9.8 267 11-331 30-336 (411)
40 KOG2007|consensus 99.9 1.6E-26 3.4E-31 245.3 10.5 254 10-319 46-341 (586)
41 PTZ00399 cysteinyl-tRNA-synthe 99.9 1.5E-25 3.2E-30 258.8 17.0 277 10-332 51-363 (651)
42 cd00671 ArgRS_core catalytic c 99.8 5.8E-20 1.2E-24 186.2 13.5 181 23-273 7-212 (212)
43 COG2878 Predicted NADH:ubiquin 99.8 1.5E-20 3.3E-25 175.7 6.0 126 535-660 43-169 (198)
44 PRK08764 ferredoxin; Provision 99.8 5.8E-20 1.3E-24 171.9 8.8 124 532-655 11-134 (135)
45 PRK01611 argS arginyl-tRNA syn 99.8 9.1E-19 2E-23 199.7 14.2 229 16-331 109-386 (507)
46 PRK05113 electron transport co 99.8 1.5E-18 3.3E-23 171.5 9.2 138 527-665 35-173 (191)
47 TIGR01944 rnfB electron transp 99.7 9.4E-18 2E-22 162.6 9.3 122 535-657 41-164 (165)
48 PRK11893 methionyl-tRNA synthe 99.7 4E-16 8.6E-21 179.4 15.0 274 22-332 7-348 (511)
49 cd00814 MetRS_core catalytic c 99.5 8.8E-14 1.9E-18 149.9 15.3 89 24-116 8-116 (319)
50 PRK12451 arginyl-tRNA syntheta 99.5 1.6E-14 3.6E-19 166.1 9.9 89 181-299 294-388 (562)
51 PRK07118 ferredoxin; Validated 99.5 1.1E-14 2.4E-19 152.4 7.6 134 524-658 32-190 (280)
52 COG0143 MetG Methionyl-tRNA sy 99.5 6.8E-14 1.5E-18 157.8 14.0 279 24-336 13-386 (558)
53 TIGR00456 argS arginyl-tRNA sy 99.5 3.1E-14 6.8E-19 164.4 10.9 78 181-276 298-381 (566)
54 PF13247 Fer4_11: 4Fe-4S diclu 99.5 3.2E-15 6.9E-20 130.9 1.0 85 536-657 4-97 (98)
55 cd00668 Ile_Leu_Val_MetRS_core 99.5 3.7E-13 7.9E-18 144.8 16.5 248 24-320 8-310 (312)
56 PLN02224 methionine-tRNA ligas 99.5 9.8E-14 2.1E-18 159.8 11.2 282 21-331 74-414 (616)
57 COG0437 HybA Fe-S-cluster-cont 99.5 1.9E-14 4E-19 141.1 3.9 88 535-659 63-159 (203)
58 cd00672 CysRS_core catalytic c 99.5 2.2E-13 4.8E-18 137.4 11.6 74 11-84 12-105 (213)
59 TIGR00398 metG methionyl-tRNA 99.5 6E-13 1.3E-17 153.6 16.2 281 21-331 4-375 (530)
60 PRK12267 methionyl-tRNA synthe 99.5 1.8E-13 3.9E-18 161.1 10.9 284 21-332 9-348 (648)
61 PRK00133 metG methionyl-tRNA s 99.5 9.2E-13 2E-17 155.4 16.7 278 24-329 10-376 (673)
62 COG0018 ArgS Arginyl-tRNA synt 99.4 5.8E-13 1.3E-17 151.5 11.4 237 17-299 116-400 (577)
63 PLN02610 probable methionyl-tR 99.4 1.8E-12 3.8E-17 153.9 15.4 288 21-332 22-398 (801)
64 PRK12268 methionyl-tRNA synthe 99.4 2.8E-12 6E-17 148.9 16.6 278 24-330 11-381 (556)
65 cd00802 class_I_aaRS_core cata 99.4 2.9E-13 6.2E-18 128.7 6.8 133 21-272 2-143 (143)
66 PLN02286 arginine-tRNA ligase 99.3 8.1E-12 1.7E-16 144.1 14.5 92 181-299 297-395 (576)
67 cd00818 IleRS_core catalytic c 99.3 3E-12 6.5E-17 138.9 9.4 92 24-117 9-137 (338)
68 TIGR03478 DMSO_red_II_bet DMSO 99.3 8.6E-13 1.9E-17 137.0 4.2 88 535-659 125-221 (321)
69 PF09334 tRNA-synt_1g: tRNA sy 99.3 1.2E-12 2.7E-17 144.1 5.1 274 24-336 7-380 (391)
70 cd00812 LeuRS_core catalytic c 99.3 1E-11 2.2E-16 133.6 11.9 89 24-116 8-118 (314)
71 TIGR01660 narH nitrate reducta 99.3 1.4E-12 3E-17 140.3 3.9 121 497-657 140-271 (492)
72 PF00750 tRNA-synt_1d: tRNA sy 99.3 1.3E-11 2.7E-16 134.7 9.9 104 162-299 194-305 (354)
73 PF14697 Fer4_21: 4Fe-4S diclu 99.3 2.1E-12 4.6E-17 102.5 2.5 54 602-655 2-59 (59)
74 COG1142 HycB Fe-S-cluster-cont 99.2 2.3E-12 5E-17 122.2 2.2 87 536-658 48-141 (165)
75 COG1143 NuoI Formate hydrogenl 99.2 3.7E-12 8E-17 122.6 3.1 65 595-659 44-118 (172)
76 PRK08493 NADH dehydrogenase su 99.2 1E-11 2.2E-16 146.6 7.3 107 552-658 85-226 (819)
77 cd00817 ValRS_core catalytic c 99.2 3.3E-11 7.2E-16 133.0 10.2 91 24-116 9-135 (382)
78 PRK14993 tetrathionate reducta 99.2 8.1E-12 1.7E-16 128.5 3.6 86 536-659 95-189 (244)
79 TIGR03149 cyt_nit_nrfC cytochr 99.2 1.2E-11 2.5E-16 126.2 4.0 87 536-659 89-185 (225)
80 PRK09898 hypothetical protein; 99.2 1.5E-11 3.1E-16 124.2 3.2 86 536-658 118-203 (208)
81 PRK07569 bidirectional hydroge 99.2 4.5E-11 9.7E-16 122.9 6.9 107 552-658 89-212 (234)
82 COG3383 Uncharacterized anaero 99.1 2.3E-11 4.9E-16 136.0 4.7 105 552-656 89-212 (978)
83 cd00674 LysRS_core_class_I cat 99.1 2.7E-09 5.8E-14 115.1 19.7 244 21-325 23-317 (353)
84 TIGR01582 FDH-beta formate deh 99.1 2E-11 4.3E-16 127.6 3.1 86 536-659 88-183 (283)
85 PRK10882 hydrogenase 2 protein 99.1 2.1E-11 4.5E-16 129.9 3.2 88 536-658 107-207 (328)
86 PRK00750 lysK lysyl-tRNA synth 99.1 1.1E-09 2.4E-14 124.6 14.7 243 21-324 27-321 (510)
87 PTZ00305 NADH:ubiquinone oxido 99.1 1.3E-10 2.8E-15 119.3 6.2 109 551-659 154-276 (297)
88 TIGR01973 NuoG NADH-quinone ox 99.1 1.7E-10 3.7E-15 135.1 7.1 107 552-658 85-204 (603)
89 COG1148 HdrA Heterodisulfide r 99.1 1E-10 2.2E-15 125.8 4.7 133 507-658 465-609 (622)
90 PF13187 Fer4_9: 4Fe-4S diclus 99.0 9.4E-11 2E-15 92.1 2.4 47 607-653 1-55 (55)
91 PRK09130 NADH dehydrogenase su 99.0 3.1E-10 6.8E-15 133.7 7.3 115 552-666 88-215 (687)
92 PRK08166 NADH dehydrogenase su 99.0 2.8E-10 6.1E-15 138.2 7.1 107 552-658 92-211 (847)
93 PRK05035 electron transport co 99.0 1.9E-10 4.1E-15 134.1 4.5 120 604-728 368-499 (695)
94 PRK07860 NADH dehydrogenase su 99.0 3.9E-10 8.4E-15 135.6 7.1 107 552-658 92-212 (797)
95 PRK09129 NADH dehydrogenase su 99.0 3.6E-10 7.8E-15 136.2 6.8 107 552-658 87-206 (776)
96 KOG0436|consensus 99.0 5.5E-09 1.2E-13 110.1 14.4 304 2-335 22-396 (578)
97 TIGR02951 DMSO_dmsB DMSO reduc 99.0 2.1E-10 4.6E-15 111.2 3.6 86 536-658 59-153 (161)
98 COG1144 Pyruvate:ferredoxin ox 99.0 1.3E-10 2.8E-15 97.1 1.7 60 599-658 28-88 (91)
99 PRK10330 formate dehydrogenase 99.0 2E-10 4.4E-15 113.5 3.0 86 537-658 54-157 (181)
100 PRK08348 NADH-plastoquinone ox 98.9 6.6E-10 1.4E-14 102.2 4.1 63 596-658 32-95 (120)
101 COG1034 NuoG NADH dehydrogenas 98.9 7.4E-10 1.6E-14 127.7 5.0 114 553-666 88-214 (693)
102 TIGR02936 fdxN_nitrog ferredox 98.9 4.1E-10 8.8E-15 98.3 2.2 59 598-656 13-90 (91)
103 PRK09624 porD pyuvate ferredox 98.9 7E-10 1.5E-14 99.1 3.0 60 599-658 44-103 (105)
104 PRK08222 hydrogenase 4 subunit 98.9 1.3E-09 2.7E-14 107.4 4.2 64 595-658 27-95 (181)
105 TIGR02179 PorD_KorD 2-oxoacid: 98.9 1.4E-09 3.1E-14 92.0 3.5 58 600-657 19-76 (78)
106 PRK09625 porD pyruvate flavodo 98.9 1.1E-09 2.4E-14 102.2 2.7 57 600-656 53-109 (133)
107 KOG3256|consensus 98.8 1E-09 2.2E-14 101.1 2.3 62 600-661 105-175 (212)
108 PRK09623 vorD 2-ketoisovalerat 98.8 1.8E-09 4E-14 96.6 3.7 60 599-658 44-103 (105)
109 PRK09626 oorD 2-oxoglutarate-a 98.8 1.9E-09 4.2E-14 96.2 3.5 61 598-658 8-75 (103)
110 TIGR00403 ndhI NADH-plastoquin 98.8 3.1E-09 6.6E-14 104.8 4.4 64 596-659 52-125 (183)
111 TIGR00397 mauM_napG MauM/NapG 98.8 2.6E-09 5.7E-14 107.8 3.6 93 539-658 91-199 (213)
112 PF12838 Fer4_7: 4Fe-4S diclus 98.8 1.7E-09 3.7E-14 83.9 1.6 46 607-652 1-52 (52)
113 PRK12769 putative oxidoreducta 98.8 2.8E-09 6.2E-14 126.1 4.2 87 536-658 51-147 (654)
114 TIGR02494 PFLE_PFLC glycyl-rad 98.8 2.3E-09 5E-14 114.6 3.0 60 598-657 40-103 (295)
115 COG1146 Ferredoxin [Energy pro 98.8 3E-09 6.6E-14 87.4 3.0 58 601-658 3-63 (68)
116 PRK12387 formate hydrogenlyase 98.8 4E-09 8.8E-14 104.0 4.1 63 596-658 28-95 (180)
117 CHL00065 psaC photosystem I su 98.8 3E-09 6.6E-14 90.6 2.6 58 602-659 5-69 (81)
118 PRK05888 NADH dehydrogenase su 98.8 6.1E-09 1.3E-13 101.2 4.4 62 598-659 45-120 (164)
119 PRK06273 ferredoxin; Provision 98.7 3.5E-09 7.6E-14 102.1 2.4 56 600-655 43-110 (165)
120 PLN00071 photosystem I subunit 98.7 4.7E-09 1E-13 89.5 2.8 58 601-658 4-68 (81)
121 PF13237 Fer4_10: 4Fe-4S diclu 98.7 4.1E-09 9E-14 81.7 1.8 48 601-649 2-52 (52)
122 COG1149 MinD superfamily P-loo 98.7 3.9E-09 8.6E-14 107.0 2.2 60 600-659 63-122 (284)
123 PRK13208 valS valyl-tRNA synth 98.7 1.4E-07 3E-12 114.1 15.2 93 21-117 42-170 (800)
124 TIGR02060 aprB adenosine phosp 98.7 5.9E-09 1.3E-13 96.7 2.6 58 601-658 3-67 (132)
125 PRK12809 putative oxidoreducta 98.7 7.1E-09 1.5E-13 122.3 3.9 82 536-658 51-139 (639)
126 COG1145 NapF Ferredoxin [Energ 98.7 6.4E-09 1.4E-13 91.9 2.6 58 601-658 24-85 (99)
127 CHL00014 ndhI NADH dehydrogena 98.7 1.3E-08 2.8E-13 99.1 4.8 62 597-658 50-121 (167)
128 PRK09476 napG quinol dehydroge 98.7 8.1E-09 1.8E-13 106.9 3.6 92 539-657 97-207 (254)
129 TIGR00467 lysS_arch lysyl-tRNA 98.7 2.7E-07 5.9E-12 104.5 15.6 88 217-327 224-317 (515)
130 PRK10194 ferredoxin-type prote 98.7 1.2E-08 2.5E-13 99.2 3.6 49 609-657 107-159 (163)
131 PRK09477 napH quinol dehydroge 98.7 8.8E-09 1.9E-13 108.3 2.6 56 603-658 205-264 (271)
132 TIGR00422 valS valyl-tRNA synt 98.6 1.2E-06 2.6E-11 106.8 20.7 91 23-117 40-168 (861)
133 TIGR01971 NuoI NADH-quinone ox 98.6 1.6E-08 3.5E-13 93.3 3.4 61 598-658 30-104 (122)
134 TIGR03048 PS_I_psaC photosyste 98.6 1.5E-08 3.3E-13 86.1 2.8 58 601-658 3-67 (80)
135 TIGR02163 napH_ ferredoxin-typ 98.6 2.1E-08 4.4E-13 104.5 3.0 53 604-656 199-254 (255)
136 PRK10194 ferredoxin-type prote 98.5 3.7E-08 8.1E-13 95.6 2.4 87 536-657 31-125 (163)
137 PRK02651 photosystem I subunit 98.5 5.7E-08 1.2E-12 82.8 2.9 56 603-658 6-68 (81)
138 PRK05729 valS valyl-tRNA synth 98.5 4.7E-06 1E-10 101.7 20.6 89 24-116 44-170 (874)
139 PF13247 Fer4_11: 4Fe-4S diclu 98.5 6.1E-08 1.3E-12 85.1 3.0 57 602-658 3-62 (98)
140 TIGR00402 napF ferredoxin-type 98.5 6E-08 1.3E-12 86.3 2.7 56 601-656 29-86 (101)
141 PRK07118 ferredoxin; Validated 98.5 6.9E-08 1.5E-12 101.5 3.1 56 603-659 210-265 (280)
142 PRK08318 dihydropyrimidine deh 98.5 9.3E-08 2E-12 107.2 4.3 74 599-673 335-414 (420)
143 TIGR02700 flavo_MJ0208 archaeo 98.5 1.2E-07 2.5E-12 97.7 4.6 57 601-658 143-199 (234)
144 COG1140 NarY Nitrate reductase 98.5 2.9E-08 6.3E-13 103.2 -0.5 120 497-657 140-270 (513)
145 TIGR01660 narH nitrate reducta 98.4 9.4E-08 2E-12 103.5 3.2 60 599-658 174-236 (492)
146 COG4656 RnfC Predicted NADH:ub 98.4 3.5E-08 7.7E-13 108.1 -0.3 122 607-729 366-499 (529)
147 PRK00783 DNA-directed RNA poly 98.4 1.4E-07 3E-12 99.0 4.0 60 599-659 163-222 (263)
148 PRK14028 pyruvate ferredoxin o 98.4 7.8E-08 1.7E-12 103.5 2.0 58 600-657 241-310 (312)
149 COG1142 HycB Fe-S-cluster-cont 98.4 1.6E-07 3.5E-12 89.4 3.0 52 606-658 51-104 (165)
150 cd07030 RNAP_D D subunit of Ar 98.4 2.2E-07 4.8E-12 97.2 3.7 58 601-659 165-222 (259)
151 TIGR03478 DMSO_red_II_bet DMSO 98.3 2E-07 4.4E-12 97.4 2.7 59 600-658 123-184 (321)
152 TIGR02512 Fe_only_hydrog hydro 98.3 1.6E-07 3.4E-12 103.5 1.9 56 601-656 2-70 (374)
153 COG2768 Uncharacterized Fe-S c 98.3 2.3E-07 5.1E-12 94.6 2.3 55 600-656 187-241 (354)
154 TIGR03224 benzo_boxA benzoyl-C 98.3 2.9E-07 6.3E-12 102.6 2.7 55 601-656 5-59 (411)
155 TIGR02912 sulfite_red_C sulfit 98.3 3.1E-07 6.7E-12 98.9 2.6 56 601-657 164-222 (314)
156 TIGR03294 FrhG coenzyme F420 h 98.3 7.5E-07 1.6E-11 91.0 4.4 57 599-656 167-223 (228)
157 TIGR00397 mauM_napG MauM/NapG 98.2 7.9E-07 1.7E-11 89.9 4.0 58 601-658 86-160 (213)
158 PF12837 Fer4_6: 4Fe-4S bindin 98.2 3.7E-07 8.1E-12 58.2 0.9 23 601-623 2-24 (24)
159 TIGR03287 methan_mark_16 putat 98.2 8E-07 1.7E-11 96.0 3.7 56 599-658 295-352 (391)
160 TIGR02176 pyruv_ox_red pyruvat 98.2 6.2E-07 1.3E-11 111.1 2.9 61 599-659 676-764 (1165)
161 TIGR03149 cyt_nit_nrfC cytochr 98.2 8.2E-07 1.8E-11 90.7 3.2 57 601-657 87-146 (225)
162 COG2221 DsrA Dissimilatory sul 98.2 5.2E-07 1.1E-11 93.7 1.5 49 601-650 167-215 (317)
163 TIGR01582 FDH-beta formate deh 98.2 8.3E-07 1.8E-11 93.1 2.7 58 600-657 85-145 (283)
164 PRK14993 tetrathionate reducta 98.1 8.9E-07 1.9E-11 91.3 2.2 56 603-658 95-152 (244)
165 PRK13984 putative oxidoreducta 98.1 2E-06 4.3E-11 101.3 5.4 63 596-658 35-108 (604)
166 PRK09476 napG quinol dehydroge 98.1 1.3E-06 2.7E-11 90.7 3.2 55 603-657 94-165 (254)
167 COG0437 HybA Fe-S-cluster-cont 98.1 1.2E-06 2.7E-11 86.4 2.9 57 601-657 62-121 (203)
168 PRK15449 ferredoxin-like prote 98.1 2.2E-06 4.7E-11 74.1 3.4 54 599-653 23-78 (95)
169 PF01921 tRNA-synt_1f: tRNA sy 98.1 1.1E-05 2.4E-10 86.5 9.0 78 216-315 232-314 (360)
170 cd00806 TrpRS_core catalytic c 98.1 2.8E-05 6E-10 82.2 12.0 91 26-126 7-104 (280)
171 PRK09898 hypothetical protein; 98.1 2.4E-06 5.3E-11 86.3 3.5 59 599-657 114-175 (208)
172 PRK10330 formate dehydrogenase 98.1 3E-06 6.6E-11 83.8 3.9 52 605-657 55-108 (181)
173 TIGR00396 leuS_bact leucyl-tRN 98.0 8.7E-06 1.9E-10 98.5 8.2 90 21-116 34-147 (842)
174 PRK13795 hypothetical protein; 98.0 2.2E-06 4.8E-11 100.5 2.9 56 600-655 575-631 (636)
175 TIGR02745 ccoG_rdxA_fixG cytoc 98.0 2E-06 4.3E-11 95.5 2.3 47 605-658 230-276 (434)
176 PRK00390 leuS leucyl-tRNA synt 98.0 9E-06 1.9E-10 98.1 7.7 92 24-117 40-151 (805)
177 TIGR02951 DMSO_dmsB DMSO reduc 98.0 4E-06 8.6E-11 81.3 3.7 56 602-657 58-116 (161)
178 PRK09326 F420H2 dehydrogenase 98.0 2.6E-06 5.6E-11 92.8 2.4 53 601-653 7-70 (341)
179 PRK10882 hydrogenase 2 protein 98.0 3E-06 6.5E-11 90.7 2.7 56 602-657 106-164 (328)
180 PF13484 Fer4_16: 4Fe-4S doubl 98.0 2E-06 4.4E-11 70.3 1.0 45 607-651 1-67 (67)
181 PF00037 Fer4: 4Fe-4S binding 98.0 3.7E-06 8.1E-11 53.8 1.7 22 602-623 2-23 (24)
182 TIGR03315 Se_ygfK putative sel 97.8 7.3E-06 1.6E-10 99.5 2.7 55 604-658 879-943 (1012)
183 PRK12771 putative glutamate sy 97.8 7.8E-06 1.7E-10 95.4 2.8 57 601-657 499-562 (564)
184 PRK12809 putative oxidoreducta 97.8 7.4E-06 1.6E-10 96.9 2.0 54 603-657 51-106 (639)
185 PLN02563 aminoacyl-tRNA ligase 97.8 3.5E-05 7.5E-10 93.8 7.6 93 21-117 115-230 (963)
186 PF12837 Fer4_6: 4Fe-4S bindin 97.8 6.3E-06 1.4E-10 52.6 0.5 22 632-653 3-24 (24)
187 COG4231 Indolepyruvate ferredo 97.8 1.2E-05 2.6E-10 90.4 2.4 58 600-658 571-630 (640)
188 COG1245 Predicted ATPase, RNas 97.8 1.3E-05 2.9E-10 86.7 2.6 60 600-659 5-73 (591)
189 TIGR02066 dsrB sulfite reducta 97.7 9.9E-06 2.1E-10 87.7 1.2 49 608-656 183-234 (341)
190 PF00037 Fer4: 4Fe-4S binding 97.7 2.1E-05 4.6E-10 50.3 2.0 23 632-654 2-24 (24)
191 PRK09853 putative selenate red 97.7 1.7E-05 3.7E-10 95.9 2.7 57 602-658 882-948 (1019)
192 COG1384 LysS Lysyl-tRNA synthe 97.7 0.00026 5.6E-09 78.3 11.2 77 218-316 229-310 (521)
193 TIGR00392 ileS isoleucyl-tRNA 97.7 8.7E-05 1.9E-09 90.8 8.3 91 21-117 41-172 (861)
194 TIGR03336 IOR_alpha indolepyru 97.7 1.8E-05 3.8E-10 92.7 2.2 51 599-653 543-595 (595)
195 COG1148 HdrA Heterodisulfide r 97.7 1.1E-05 2.3E-10 87.8 0.0 57 602-659 221-294 (622)
196 COG0495 LeuS Leucyl-tRNA synth 97.6 6.5E-05 1.4E-09 88.7 6.0 87 25-117 43-153 (814)
197 PTZ00419 valyl-tRNA synthetase 97.6 9.4E-05 2E-09 91.6 7.8 93 21-117 65-196 (995)
198 PRK05743 ileS isoleucyl-tRNA s 97.6 8.6E-05 1.9E-09 90.9 7.0 92 21-116 54-180 (912)
199 COG1143 NuoI Formate hydrogenl 97.6 2.3E-05 5E-10 75.9 1.6 65 536-627 52-116 (172)
200 PRK14900 valS valyl-tRNA synth 97.6 8.6E-05 1.9E-09 91.9 6.9 92 21-116 53-183 (1052)
201 PLN02943 aminoacyl-tRNA ligase 97.6 0.00012 2.6E-09 89.9 8.0 93 21-117 93-223 (958)
202 PF13183 Fer4_8: 4Fe-4S diclus 97.6 7.5E-06 1.6E-10 64.6 -1.8 47 605-651 2-56 (57)
203 PF04060 FeS: Putative Fe-S cl 97.6 5E-05 1.1E-09 53.3 2.5 34 536-569 2-35 (35)
204 PRK13409 putative ATPase RIL; 97.6 3.5E-05 7.5E-10 90.0 2.8 60 600-659 4-72 (590)
205 PF14697 Fer4_21: 4Fe-4S diclu 97.5 2.6E-05 5.7E-10 61.9 0.7 25 601-625 34-59 (59)
206 PF12797 Fer4_2: 4Fe-4S bindin 97.5 3.8E-05 8.2E-10 47.3 1.1 20 601-620 3-22 (22)
207 PRK06039 ileS isoleucyl-tRNA s 97.5 0.00021 4.6E-09 88.2 7.7 91 21-117 46-177 (975)
208 PRK12769 putative oxidoreducta 97.5 7.1E-05 1.5E-09 88.9 3.4 53 604-657 52-106 (654)
209 PTZ00427 isoleucine-tRNA ligas 97.4 0.0002 4.3E-09 89.1 7.2 90 24-117 110-238 (1205)
210 TIGR01945 rnfC electron transp 97.4 5.5E-05 1.2E-09 85.1 2.0 49 603-651 360-417 (435)
211 PLN02381 valyl-tRNA synthetase 97.4 0.00025 5.4E-09 87.8 7.8 93 21-117 133-264 (1066)
212 PF00133 tRNA-synt_1: tRNA syn 97.4 0.00031 6.6E-09 82.5 7.4 92 21-116 28-158 (601)
213 PLN02843 isoleucyl-tRNA synthe 97.3 0.00036 7.9E-09 85.8 7.7 92 21-116 37-164 (974)
214 PLN02882 aminoacyl-tRNA ligase 97.3 0.0003 6.4E-09 87.7 7.0 90 24-117 46-174 (1159)
215 KOG0435|consensus 97.3 0.00012 2.6E-09 82.2 2.6 92 20-117 61-176 (876)
216 TIGR00395 leuS_arch leucyl-tRN 97.3 0.0003 6.5E-09 86.4 6.1 90 21-116 30-167 (938)
217 PRK13984 putative oxidoreducta 97.3 0.00015 3.3E-09 85.4 3.4 25 601-625 81-105 (604)
218 COG0525 ValS Valyl-tRNA synthe 97.3 0.00052 1.1E-08 81.2 7.6 93 21-117 38-168 (877)
219 COG2440 FixX Ferredoxin-like p 97.2 0.00019 4.2E-09 61.4 2.5 59 598-656 25-86 (99)
220 PRK13804 ileS isoleucyl-tRNA s 97.2 0.00052 1.1E-08 84.4 6.9 92 21-116 59-188 (961)
221 PF12798 Fer4_3: 4Fe-4S bindin 97.2 0.00012 2.6E-09 41.1 0.6 15 638-652 1-15 (15)
222 PRK00941 acetyl-CoA decarbonyl 97.2 8.8E-05 1.9E-09 86.7 -0.3 53 600-652 398-458 (781)
223 PRK08222 hydrogenase 4 subunit 97.1 0.00021 4.5E-09 70.5 2.1 60 536-627 35-94 (181)
224 PRK12387 formate hydrogenlyase 97.1 0.00025 5.4E-09 70.0 2.3 43 601-643 68-122 (180)
225 TIGR00314 cdhA CO dehydrogenas 97.1 0.00016 3.4E-09 84.5 0.9 51 601-651 394-452 (784)
226 PF13459 Fer4_15: 4Fe-4S singl 97.1 0.00021 4.6E-09 58.0 1.4 54 601-655 1-65 (65)
227 TIGR00233 trpS tryptophanyl-tR 97.1 0.0052 1.1E-07 66.5 12.5 77 25-105 9-93 (328)
228 PF13534 Fer4_17: 4Fe-4S diclu 97.1 0.00011 2.3E-09 58.8 -0.6 45 607-651 1-59 (61)
229 PRK07570 succinate dehydrogena 97.0 0.00024 5.3E-09 73.4 1.7 50 602-651 153-227 (250)
230 COG1141 Fer Ferredoxin [Energy 97.0 0.00028 6.1E-09 57.1 1.6 56 600-656 2-67 (68)
231 PRK12814 putative NADPH-depend 97.0 0.00048 1E-08 81.7 4.0 77 566-654 574-652 (652)
232 cd01916 ACS_1 Acetyl-CoA synth 97.0 0.00013 2.8E-09 85.3 -0.8 52 601-652 360-419 (731)
233 TIGR00276 iron-sulfur cluster 97.0 0.00025 5.4E-09 74.8 1.3 49 605-653 158-226 (282)
234 TIGR03290 CoB_CoM_SS_C CoB--Co 97.0 0.00031 6.8E-09 66.7 1.4 47 606-652 2-62 (144)
235 PRK12285 tryptophanyl-tRNA syn 96.9 0.0041 8.9E-08 68.1 9.9 96 8-108 57-159 (368)
236 TIGR00384 dhsB succinate dehyd 96.9 0.00028 6.2E-09 72.0 0.8 48 604-651 136-209 (220)
237 PF13370 Fer4_13: 4Fe-4S singl 96.9 0.00059 1.3E-08 54.0 2.4 52 603-655 1-58 (58)
238 TIGR01936 nqrA NADH:ubiquinone 96.9 0.00026 5.7E-09 79.1 0.5 52 604-656 371-433 (447)
239 PF13187 Fer4_9: 4Fe-4S diclus 96.9 0.00031 6.7E-09 54.8 0.7 20 604-623 36-55 (55)
240 TIGR02064 dsrA sulfite reducta 96.9 0.00039 8.4E-09 76.7 1.6 44 612-656 248-291 (402)
241 PF12798 Fer4_3: 4Fe-4S bindin 96.9 0.00044 9.5E-09 38.9 0.9 15 608-622 1-15 (15)
242 TIGR02060 aprB adenosine phosp 96.8 0.00052 1.1E-08 63.9 1.8 58 536-626 5-65 (132)
243 PRK08348 NADH-plastoquinone ox 96.8 0.00055 1.2E-08 62.9 2.0 27 601-627 68-94 (120)
244 PRK05352 Na(+)-translocating N 96.8 0.00037 8E-09 78.1 0.7 52 604-656 372-434 (448)
245 PF12838 Fer4_7: 4Fe-4S diclus 96.8 0.00041 8.9E-09 53.5 0.5 24 599-622 29-52 (52)
246 TIGR00273 iron-sulfur cluster- 96.7 0.00048 1E-08 76.9 0.9 48 604-651 291-358 (432)
247 KOG0432|consensus 96.7 0.0025 5.4E-08 74.1 6.3 93 21-117 80-211 (995)
248 PRK09625 porD pyruvate flavodo 96.7 0.00057 1.2E-08 63.9 0.8 25 601-625 84-108 (133)
249 TIGR00403 ndhI NADH-plastoquin 96.7 0.00089 1.9E-08 66.2 2.1 28 600-627 96-123 (183)
250 PRK12576 succinate dehydrogena 96.6 0.00068 1.5E-08 71.5 1.3 49 603-651 149-221 (279)
251 COG1139 Uncharacterized conser 96.6 0.00065 1.4E-08 73.4 1.0 50 606-656 308-377 (459)
252 TIGR02486 RDH reductive dehalo 96.6 0.00089 1.9E-08 71.7 2.0 47 605-651 204-279 (314)
253 PRK09624 porD pyuvate ferredox 96.6 0.00083 1.8E-08 60.1 1.1 26 601-626 76-101 (105)
254 PLN02959 aminoacyl-tRNA ligase 96.6 0.0038 8.3E-08 77.7 7.3 28 21-48 49-77 (1084)
255 PRK15449 ferredoxin-like prote 96.5 0.00065 1.4E-08 58.9 0.1 27 597-623 52-78 (95)
256 PRK06273 ferredoxin; Provision 96.5 0.0008 1.7E-08 65.1 0.7 26 600-625 85-110 (165)
257 PRK13030 2-oxoacid ferredoxin 96.5 0.0013 2.8E-08 81.0 2.7 50 600-651 623-678 (1159)
258 COG1144 Pyruvate:ferredoxin ox 96.4 0.00096 2.1E-08 56.4 0.7 25 603-627 63-87 (91)
259 PRK09623 vorD 2-ketoisovalerat 96.4 0.0014 3.1E-08 58.6 1.8 26 601-626 76-101 (105)
260 TIGR00395 leuS_arch leucyl-tRN 96.4 0.0031 6.7E-08 77.7 5.2 65 253-333 605-670 (938)
261 PRK12385 fumarate reductase ir 96.4 0.001 2.2E-08 68.8 0.9 48 604-651 145-218 (244)
262 PF12797 Fer4_2: 4Fe-4S bindin 96.4 0.0014 3.1E-08 40.5 1.1 19 632-650 4-22 (22)
263 KOG2282|consensus 96.4 0.0011 2.4E-08 72.4 0.9 115 555-669 121-248 (708)
264 PF12800 Fer4_4: 4Fe-4S bindin 96.4 0.0012 2.6E-08 38.5 0.6 15 606-620 2-16 (17)
265 PRK06991 ferredoxin; Provision 96.4 0.0013 2.9E-08 68.6 1.5 26 601-626 110-135 (270)
266 TIGR03287 methan_mark_16 putat 96.3 0.0015 3.3E-08 71.0 1.7 54 536-628 299-352 (391)
267 PF13237 Fer4_10: 4Fe-4S diclu 96.3 0.0018 4E-08 49.9 1.7 21 599-619 32-52 (52)
268 PRK04165 acetyl-CoA decarbonyl 96.3 0.0039 8.5E-08 69.6 4.9 51 536-586 12-62 (450)
269 TIGR02066 dsrB sulfite reducta 96.3 0.0015 3.3E-08 70.8 1.6 28 598-625 206-233 (341)
270 PRK09193 indolepyruvate ferred 96.3 0.0021 4.5E-08 79.1 2.6 51 599-651 636-692 (1165)
271 PRK13029 2-oxoacid ferredoxin 96.2 0.0024 5.1E-08 78.4 2.6 51 599-651 650-706 (1186)
272 TIGR03224 benzo_boxA benzoyl-C 96.2 0.0029 6.3E-08 70.8 2.9 53 535-625 6-58 (411)
273 PRK05888 NADH dehydrogenase su 96.2 0.0031 6.6E-08 61.3 2.7 27 601-627 92-118 (164)
274 TIGR01944 rnfB electron transp 96.2 0.0022 4.7E-08 62.4 1.5 26 601-626 138-163 (165)
275 PRK08640 sdhB succinate dehydr 96.1 0.0013 2.9E-08 68.1 -0.1 48 604-651 150-224 (249)
276 PRK09626 oorD 2-oxoglutarate-a 96.1 0.004 8.6E-08 55.6 2.9 27 601-627 48-74 (103)
277 PRK11168 glpC sn-glycerol-3-ph 96.1 0.0021 4.5E-08 71.8 1.4 49 604-652 5-70 (396)
278 PRK05113 electron transport co 96.1 0.0028 6.1E-08 63.1 2.1 26 601-626 139-164 (191)
279 TIGR02179 PorD_KorD 2-oxoacid: 96.1 0.0026 5.7E-08 53.5 1.6 26 601-626 50-75 (78)
280 TIGR03379 glycerol3P_GlpC glyc 96.1 0.0021 4.5E-08 71.8 1.2 46 606-651 5-67 (397)
281 PRK06214 sulfite reductase; Pr 96.1 0.0057 1.2E-07 70.1 4.5 48 535-583 86-134 (530)
282 CHL00014 ndhI NADH dehydrogena 96.0 0.0029 6.4E-08 61.6 1.8 27 601-627 94-120 (167)
283 KOG3256|consensus 96.0 0.0023 5E-08 59.8 0.8 28 600-627 144-171 (212)
284 COG1145 NapF Ferredoxin [Energ 96.0 0.0046 1E-07 54.2 2.6 28 599-626 56-83 (99)
285 COG1600 Uncharacterized Fe-S p 96.0 0.0029 6.3E-08 67.7 1.5 46 606-651 185-249 (337)
286 PRK15055 anaerobic sulfite red 95.9 0.0029 6.2E-08 68.3 1.3 20 636-656 307-326 (344)
287 PRK05950 sdhB succinate dehydr 95.9 0.0025 5.5E-08 65.6 0.6 48 604-651 139-213 (232)
288 COG1035 FrhB Coenzyme F420-red 95.9 0.0031 6.8E-08 67.3 1.3 47 603-650 2-48 (332)
289 COG1245 Predicted ATPase, RNas 95.9 0.0033 7.1E-08 68.7 1.4 28 598-625 42-69 (591)
290 CHL00065 psaC photosystem I su 95.9 0.0047 1E-07 52.4 2.1 25 602-626 42-66 (81)
291 PRK08764 ferredoxin; Provision 95.8 0.0047 1E-07 57.9 1.8 25 601-625 110-134 (135)
292 TIGR02910 sulfite_red_A sulfit 95.7 0.0048 1E-07 66.2 2.0 20 636-656 301-320 (334)
293 TIGR01971 NuoI NADH-quinone ox 95.7 0.005 1.1E-07 56.7 1.7 27 601-627 77-103 (122)
294 TIGR00402 napF ferredoxin-type 95.7 0.0073 1.6E-07 53.7 2.6 27 600-626 60-86 (101)
295 PRK12386 fumarate reductase ir 95.6 0.0045 9.9E-08 64.0 1.3 49 603-651 139-215 (251)
296 KOG0063|consensus 95.6 0.0056 1.2E-07 66.3 2.0 22 635-656 49-70 (592)
297 PF12800 Fer4_4: 4Fe-4S bindin 95.6 0.0054 1.2E-07 35.7 1.0 16 636-651 2-17 (17)
298 COG1152 CdhA CO dehydrogenase/ 95.6 0.0026 5.6E-08 70.6 -0.6 50 605-655 399-456 (772)
299 PLN00071 photosystem I subunit 95.6 0.0065 1.4E-07 51.6 1.9 24 603-626 43-66 (81)
300 COG2768 Uncharacterized Fe-S c 95.6 0.0052 1.1E-07 63.5 1.4 27 600-626 215-241 (354)
301 PRK12577 succinate dehydrogena 95.6 0.0034 7.5E-08 68.0 0.1 48 605-652 151-225 (329)
302 PRK12300 leuS leucyl-tRNA synt 95.6 0.015 3.2E-07 71.5 5.5 65 253-333 562-627 (897)
303 COG3383 Uncharacterized anaero 95.5 0.0036 7.8E-08 71.7 0.0 23 602-624 188-210 (978)
304 KOG0063|consensus 95.5 0.0085 1.9E-07 65.0 2.8 55 601-655 45-99 (592)
305 COG0180 TrpS Tryptophanyl-tRNA 95.5 0.04 8.7E-07 58.5 7.8 94 25-128 12-113 (314)
306 cd00805 TyrRS_core catalytic c 95.5 0.051 1.1E-06 57.3 8.5 83 217-313 150-234 (269)
307 TIGR02163 napH_ ferredoxin-typ 95.5 0.007 1.5E-07 63.2 2.0 47 607-653 167-218 (255)
308 PRK13552 frdB fumarate reducta 95.4 0.0058 1.3E-07 63.0 1.0 49 603-651 146-221 (239)
309 TIGR02494 PFLE_PFLC glycyl-rad 95.4 0.0065 1.4E-07 64.9 1.4 27 600-626 76-102 (295)
310 PRK12575 succinate dehydrogena 95.4 0.0044 9.6E-08 63.6 0.1 48 604-651 142-216 (235)
311 TIGR03048 PS_I_psaC photosyste 95.3 0.0097 2.1E-07 50.4 2.0 25 602-626 41-65 (80)
312 PRK14028 pyruvate ferredoxin o 95.3 0.011 2.4E-07 63.7 2.8 26 601-626 284-309 (312)
313 TIGR02745 ccoG_rdxA_fixG cytoc 95.2 0.0091 2E-07 66.7 1.7 47 608-655 178-249 (434)
314 COG0060 IleS Isoleucyl-tRNA sy 95.1 0.1 2.2E-06 63.0 10.3 89 24-116 57-183 (933)
315 PRK02651 photosystem I subunit 95.1 0.014 3E-07 49.5 2.3 25 602-626 42-66 (81)
316 TIGR02912 sulfite_red_C sulfit 95.1 0.0095 2.1E-07 64.3 1.6 28 600-627 195-222 (314)
317 COG0348 NapH Polyferredoxin [E 95.1 0.0096 2.1E-07 66.0 1.5 58 600-657 205-266 (386)
318 PRK11274 glcF glycolate oxidas 95.0 0.009 2E-07 66.9 1.2 47 605-651 22-88 (407)
319 COG1149 MinD superfamily P-loo 95.0 0.0094 2E-07 61.3 1.2 27 600-626 93-119 (284)
320 PRK12771 putative glutamate sy 95.0 0.011 2.4E-07 69.2 1.9 26 601-626 536-561 (564)
321 TIGR02936 fdxN_nitrog ferredox 95.0 0.0099 2.2E-07 51.6 1.0 25 602-626 66-90 (91)
322 COG0479 FrdB Succinate dehydro 94.9 0.011 2.5E-07 60.0 1.5 48 604-651 140-213 (234)
323 PRK06259 succinate dehydrogena 94.9 0.01 2.2E-07 68.1 1.3 48 604-651 131-200 (486)
324 PRK09477 napH quinol dehydroge 94.9 0.0095 2.1E-07 62.8 0.9 46 609-654 176-226 (271)
325 PRK08318 dihydropyrimidine deh 94.8 0.0095 2.1E-07 67.0 0.8 28 600-627 371-399 (420)
326 PRK08560 tyrosyl-tRNA syntheta 94.8 0.11 2.3E-06 56.5 8.8 76 21-99 33-115 (329)
327 PRK13409 putative ATPase RIL; 94.8 0.01 2.2E-07 69.6 0.9 29 597-625 40-68 (590)
328 COG2878 Predicted NADH:ubiquin 94.8 0.0062 1.3E-07 58.4 -0.7 28 600-627 139-166 (198)
329 COG1146 Ferredoxin [Energy pro 94.8 0.014 3.1E-07 47.7 1.5 29 599-627 34-62 (68)
330 TIGR02176 pyruv_ox_red pyruvat 94.7 0.013 2.8E-07 73.4 1.7 26 600-625 733-760 (1165)
331 PF13484 Fer4_16: 4Fe-4S doubl 94.7 0.0083 1.8E-07 48.8 -0.0 21 637-657 1-21 (67)
332 PLN00129 succinate dehydrogena 94.7 0.013 2.7E-07 61.5 1.1 46 606-651 187-259 (276)
333 COG1453 Predicted oxidoreducta 94.5 0.016 3.4E-07 61.9 1.5 46 608-655 295-369 (391)
334 TIGR02484 CitB CitB domain pro 94.5 0.0082 1.8E-07 64.8 -0.7 48 605-653 13-65 (372)
335 TIGR02700 flavo_MJ0208 archaeo 94.5 0.017 3.6E-07 59.6 1.5 26 601-626 172-197 (234)
336 PRK09853 putative selenate red 94.4 0.024 5.2E-07 69.3 2.9 26 599-625 920-945 (1019)
337 PRK13795 hypothetical protein; 94.4 0.014 3E-07 68.9 0.7 54 536-625 578-631 (636)
338 COG2221 DsrA Dissimilatory sul 94.3 0.017 3.7E-07 60.7 1.2 49 537-623 170-218 (317)
339 PRK08493 NADH dehydrogenase su 94.3 0.03 6.5E-07 67.4 3.3 22 605-626 203-224 (819)
340 PRK15033 tricarballylate utili 94.3 0.013 2.9E-07 63.5 0.3 45 605-650 32-81 (389)
341 COG4231 Indolepyruvate ferredo 94.3 0.019 4.1E-07 65.4 1.4 28 599-626 601-628 (640)
342 PRK12300 leuS leucyl-tRNA synt 94.3 0.06 1.3E-06 66.2 5.9 80 31-116 1-128 (897)
343 COG0247 GlpC Fe-S oxidoreducta 94.2 0.012 2.6E-07 65.4 -0.3 48 605-652 8-74 (388)
344 COG1140 NarY Nitrate reductase 94.2 0.027 5.9E-07 59.7 2.3 57 601-657 176-235 (513)
345 PF10588 NADH-G_4Fe-4S_3: NADH 94.2 0.043 9.4E-07 40.0 2.7 35 552-586 5-39 (41)
346 TIGR02512 Fe_only_hydrog hydro 94.1 0.018 3.9E-07 63.7 1.0 26 601-626 45-70 (374)
347 PRK12556 tryptophanyl-tRNA syn 94.0 0.16 3.6E-06 55.0 8.0 73 25-99 10-89 (332)
348 PF13746 Fer4_18: 4Fe-4S diclu 93.8 0.024 5.2E-07 46.6 0.8 17 605-621 49-65 (69)
349 COG1941 FrhG Coenzyme F420-red 93.3 0.031 6.8E-07 56.1 0.9 48 601-651 184-232 (247)
350 PF13746 Fer4_18: 4Fe-4S diclu 93.3 0.035 7.6E-07 45.6 1.0 17 637-654 51-67 (69)
351 TIGR00392 ileS isoleucyl-tRNA 93.3 0.12 2.5E-06 63.7 5.9 58 258-332 601-659 (861)
352 PRK05743 ileS isoleucyl-tRNA s 93.1 0.14 3.1E-06 63.1 6.4 50 263-329 588-637 (912)
353 cd07030 RNAP_D D subunit of Ar 93.0 0.044 9.6E-07 57.4 1.4 27 601-627 194-220 (259)
354 COG1150 HdrC Heterodisulfide r 92.9 0.02 4.4E-07 55.9 -1.1 47 605-652 38-99 (195)
355 PRK06039 ileS isoleucyl-tRNA s 92.7 0.12 2.6E-06 64.3 4.8 59 263-337 588-646 (975)
356 PRK13354 tyrosyl-tRNA syntheta 92.6 0.98 2.1E-05 50.5 11.4 76 21-100 36-128 (410)
357 COG0495 LeuS Leucyl-tRNA synth 92.5 0.096 2.1E-06 62.5 3.5 60 257-332 568-628 (814)
358 TIGR03336 IOR_alpha indolepyru 92.3 0.091 2E-06 61.8 3.0 22 601-623 574-595 (595)
359 PRK12282 tryptophanyl-tRNA syn 92.3 0.39 8.5E-06 52.1 7.6 71 26-99 10-87 (333)
360 PLN02486 aminoacyl-tRNA ligase 91.8 0.65 1.4E-05 51.3 8.8 76 21-98 76-159 (383)
361 PRK00783 DNA-directed RNA poly 91.8 0.076 1.6E-06 55.8 1.5 27 601-627 194-220 (263)
362 PRK14900 valS valyl-tRNA synth 91.6 0.23 5E-06 62.1 5.6 57 258-330 528-585 (1052)
363 PLN02886 aminoacyl-tRNA ligase 91.6 0.42 9E-06 52.6 6.9 77 25-105 53-135 (389)
364 TIGR03294 FrhG coenzyme F420 h 91.6 0.055 1.2E-06 55.5 0.1 26 601-626 198-223 (228)
365 PLN02959 aminoacyl-tRNA ligase 91.6 0.21 4.5E-06 62.6 5.1 60 255-330 706-765 (1084)
366 COG0008 GlnS Glutamyl- and glu 91.1 0.11 2.3E-06 58.8 1.7 93 250-355 218-322 (472)
367 PRK12283 tryptophanyl-tRNA syn 90.8 0.53 1.2E-05 51.8 6.8 70 26-98 10-86 (398)
368 cd00395 Tyr_Trp_RS_core cataly 90.8 0.65 1.4E-05 49.0 7.2 71 26-99 7-96 (273)
369 PRK00927 tryptophanyl-tRNA syn 90.3 0.52 1.1E-05 51.2 6.2 76 26-105 9-90 (333)
370 PLN02943 aminoacyl-tRNA ligase 90.2 0.26 5.7E-06 61.0 4.3 51 262-329 578-628 (958)
371 PRK14494 putative molybdopteri 89.8 0.25 5.4E-06 50.6 3.0 34 536-570 147-181 (229)
372 PRK12284 tryptophanyl-tRNA syn 89.4 1.1 2.3E-05 50.0 7.7 77 25-105 9-93 (431)
373 COG1456 CdhE CO dehydrogenase/ 89.4 0.33 7.2E-06 51.4 3.5 46 536-581 13-62 (467)
374 PRK05035 electron transport co 88.9 0.22 4.8E-06 59.1 2.1 22 602-623 405-426 (695)
375 cd07032 RNAP_I_II_AC40 AC40 su 88.7 0.3 6.6E-06 51.6 2.7 76 581-657 168-253 (291)
376 TIGR03315 Se_ygfK putative sel 88.1 0.33 7.1E-06 59.9 2.9 20 607-626 922-941 (1012)
377 PRK00390 leuS leucyl-tRNA synt 88.0 0.65 1.4E-05 56.6 5.4 49 267-331 570-618 (805)
378 PRK09326 F420H2 dehydrogenase 87.9 0.22 4.8E-06 54.4 1.1 26 632-657 8-33 (341)
379 TIGR00314 cdhA CO dehydrogenas 87.7 0.36 7.8E-06 57.2 2.8 19 604-622 435-453 (784)
380 PLN02882 aminoacyl-tRNA ligase 87.7 0.58 1.3E-05 59.0 4.8 62 252-329 597-661 (1159)
381 COG0525 ValS Valyl-tRNA synthe 87.6 1.3 2.9E-05 53.2 7.4 53 264-332 522-574 (877)
382 PLN02843 isoleucyl-tRNA synthe 87.3 1.3 2.8E-05 55.1 7.4 51 262-328 606-664 (974)
383 COG1453 Predicted oxidoreducta 87.2 0.33 7.2E-06 52.1 2.0 18 604-621 349-366 (391)
384 PF00133 tRNA-synt_1: tRNA syn 87.1 0.97 2.1E-05 53.3 6.0 49 258-322 551-600 (601)
385 TIGR01973 NuoG NADH-quinone ox 87.0 0.39 8.5E-06 56.7 2.6 45 607-651 183-230 (603)
386 PF00579 tRNA-synt_1b: tRNA sy 86.9 1.4 3.1E-05 46.9 6.6 84 25-112 12-106 (292)
387 TIGR00384 dhsB succinate dehyd 86.7 0.55 1.2E-05 47.9 3.2 19 605-623 193-211 (220)
388 PRK13804 ileS isoleucyl-tRNA s 86.6 0.99 2.1E-05 56.1 5.9 54 259-329 621-675 (961)
389 TIGR01945 rnfC electron transp 86.4 0.53 1.2E-05 53.1 3.2 21 602-622 398-418 (435)
390 COG4871 Uncharacterized protei 86.0 0.34 7.4E-06 45.5 1.1 34 536-569 134-167 (193)
391 cd02156 nt_trans nucleotidyl t 85.8 1.7 3.7E-05 38.6 5.5 40 21-65 2-41 (105)
392 PF06902 Fer4_19: Divergent 4F 85.5 0.51 1.1E-05 38.1 1.7 58 599-657 6-63 (64)
393 KOG0433|consensus 85.4 2.4 5.1E-05 49.4 7.5 88 27-118 66-189 (937)
394 PTZ00427 isoleucine-tRNA ligas 85.3 0.79 1.7E-05 57.9 4.2 56 263-334 716-772 (1205)
395 TIGR00396 leuS_bact leucyl-tRN 85.1 0.81 1.8E-05 56.0 4.0 50 267-332 604-653 (842)
396 PRK12576 succinate dehydrogena 84.7 0.64 1.4E-05 49.2 2.6 17 606-622 206-222 (279)
397 PRK00941 acetyl-CoA decarbonyl 84.6 0.57 1.2E-05 55.6 2.4 19 604-622 440-458 (781)
398 cd01916 ACS_1 Acetyl-CoA synth 84.4 0.61 1.3E-05 55.3 2.5 18 605-622 402-419 (731)
399 TIGR02064 dsrA sulfite reducta 84.4 0.66 1.4E-05 51.5 2.6 25 600-625 266-290 (402)
400 PRK12575 succinate dehydrogena 84.3 0.64 1.4E-05 47.8 2.3 18 606-623 201-218 (235)
401 TIGR00273 iron-sulfur cluster- 84.2 0.83 1.8E-05 51.4 3.3 18 606-623 343-360 (432)
402 PRK07569 bidirectional hydroge 84.1 0.47 1E-05 48.9 1.3 24 603-626 187-210 (234)
403 TIGR03290 CoB_CoM_SS_C CoB--Co 83.7 1 2.2E-05 42.6 3.3 19 606-624 46-64 (144)
404 TIGR02486 RDH reductive dehalo 83.4 0.44 9.6E-06 51.2 0.7 23 636-658 205-227 (314)
405 PTZ00348 tyrosyl-tRNA syntheta 83.4 2.9 6.4E-05 49.5 7.5 77 21-99 35-120 (682)
406 PTZ00126 tyrosyl-tRNA syntheta 83.4 3.1 6.6E-05 46.1 7.3 75 21-100 69-155 (383)
407 COG1152 CdhA CO dehydrogenase/ 83.1 0.59 1.3E-05 52.6 1.6 18 605-622 437-454 (772)
408 PRK09129 NADH dehydrogenase su 82.5 0.82 1.8E-05 55.7 2.6 19 608-626 186-204 (776)
409 PF13183 Fer4_8: 4Fe-4S diclus 82.2 0.55 1.2E-05 36.5 0.7 17 606-622 41-57 (57)
410 PLN02563 aminoacyl-tRNA ligase 82.2 1.2 2.7E-05 55.0 4.0 52 265-332 721-772 (963)
411 PRK07570 succinate dehydrogena 82.0 0.68 1.5E-05 48.1 1.5 17 606-622 212-228 (250)
412 PF13459 Fer4_15: 4Fe-4S singl 81.7 0.66 1.4E-05 37.4 1.0 19 632-650 2-20 (65)
413 COG2440 FixX Ferredoxin-like p 81.6 0.46 9.9E-06 41.2 0.0 28 598-625 57-85 (99)
414 PRK05950 sdhB succinate dehydr 81.4 0.94 2E-05 46.6 2.2 17 606-622 198-214 (232)
415 TIGR00276 iron-sulfur cluster 81.0 0.57 1.2E-05 49.6 0.5 20 635-654 158-177 (282)
416 PRK07860 NADH dehydrogenase su 81.0 0.87 1.9E-05 55.6 2.1 19 607-625 191-209 (797)
417 PRK09130 NADH dehydrogenase su 80.9 1.1 2.4E-05 53.6 2.9 19 608-626 187-205 (687)
418 PRK12577 succinate dehydrogena 80.9 0.93 2E-05 49.2 2.1 17 606-622 209-225 (329)
419 COG1150 HdrC Heterodisulfide r 80.9 1 2.2E-05 44.3 2.1 19 605-623 82-100 (195)
420 PRK12385 fumarate reductase ir 80.4 1.1 2.4E-05 46.5 2.3 17 606-622 203-219 (244)
421 PRK08166 NADH dehydrogenase su 79.2 1.1 2.5E-05 55.1 2.3 20 607-626 190-209 (847)
422 PRK11168 glpC sn-glycerol-3-ph 78.9 0.78 1.7E-05 51.1 0.7 18 605-622 53-70 (396)
423 KOG0437|consensus 78.8 0.62 1.3E-05 53.9 -0.1 53 257-325 700-752 (1080)
424 PRK11274 glcF glycolate oxidas 78.8 1.8 3.9E-05 48.4 3.6 17 606-622 73-89 (407)
425 PF13370 Fer4_13: 4Fe-4S singl 78.7 0.84 1.8E-05 36.0 0.6 23 634-657 2-24 (58)
426 COG1141 Fer Ferredoxin [Energy 78.5 0.92 2E-05 37.0 0.8 20 632-651 4-23 (68)
427 COG4656 RnfC Predicted NADH:ub 78.3 0.64 1.4E-05 52.2 -0.2 56 540-623 366-421 (529)
428 PRK12386 fumarate reductase ir 78.1 1.4 3E-05 45.8 2.2 19 605-623 199-217 (251)
429 PF13534 Fer4_17: 4Fe-4S diclu 77.8 0.99 2.2E-05 35.7 0.9 20 603-622 41-60 (61)
430 PLN00129 succinate dehydrogena 76.2 1.6 3.4E-05 46.0 2.0 18 606-623 244-261 (276)
431 COG1600 Uncharacterized Fe-S p 75.4 1 2.3E-05 48.5 0.5 24 636-659 185-208 (337)
432 PRK13030 2-oxoacid ferredoxin 75.3 1.3 2.7E-05 55.5 1.2 21 600-620 656-677 (1159)
433 COG1139 Uncharacterized conser 75.0 0.87 1.9E-05 49.9 -0.3 20 604-623 356-375 (459)
434 PRK05912 tyrosyl-tRNA syntheta 74.9 7.7 0.00017 43.4 7.2 78 21-100 36-130 (408)
435 PRK09193 indolepyruvate ferred 74.1 1.4 3.1E-05 54.9 1.2 21 600-620 670-691 (1165)
436 TIGR02910 sulfite_red_A sulfit 73.6 1.5 3.2E-05 47.4 1.1 20 602-621 297-316 (334)
437 PTZ00419 valyl-tRNA synthetase 73.5 3.3 7.1E-05 52.0 4.2 29 301-329 640-668 (995)
438 PRK13029 2-oxoacid ferredoxin 73.0 1.6 3.4E-05 54.5 1.2 21 600-620 684-705 (1186)
439 PLN02381 valyl-tRNA synthetase 71.8 4 8.7E-05 51.3 4.4 28 301-328 710-737 (1066)
440 TIGR03379 glycerol3P_GlpC glyc 71.4 2 4.2E-05 48.0 1.4 19 605-623 51-69 (397)
441 PRK06259 succinate dehydrogena 69.2 3.2 6.9E-05 47.7 2.5 18 605-622 184-201 (486)
442 PRK15055 anaerobic sulfite red 67.9 2 4.3E-05 46.7 0.5 19 604-622 305-323 (344)
443 PRK15033 tricarballylate utili 65.7 3.3 7.1E-05 45.4 1.6 17 604-620 65-81 (389)
444 COG1035 FrhB Coenzyme F420-red 65.2 3 6.5E-05 44.9 1.2 25 634-659 3-27 (332)
445 COG2000 Predicted Fe-S protein 64.8 4.8 0.00011 39.1 2.4 35 535-569 14-48 (226)
446 cd02156 nt_trans nucleotidyl t 64.3 4.4 9.6E-05 35.9 2.0 47 221-272 59-105 (105)
447 PF00749 tRNA-synt_1c: tRNA sy 61.9 0.73 1.6E-05 49.7 -4.2 37 283-319 259-295 (314)
448 COG0247 GlpC Fe-S oxidoreducta 61.5 5.8 0.00013 43.9 2.7 19 605-623 57-75 (388)
449 COG0479 FrdB Succinate dehydro 61.4 1.8 3.9E-05 44.3 -1.3 18 606-623 198-215 (234)
450 COG0060 IleS Isoleucyl-tRNA sy 58.9 3.5 7.5E-05 50.3 0.3 50 261-327 596-645 (933)
451 KOG0437|consensus 58.6 14 0.0003 43.5 4.9 64 21-86 48-117 (1080)
452 TIGR02484 CitB CitB domain pro 58.3 3.7 8E-05 44.8 0.4 18 605-622 47-64 (372)
453 PRK08640 sdhB succinate dehydr 56.3 4.5 9.7E-05 42.1 0.6 19 634-652 150-168 (249)
454 COG4720 Predicted membrane pro 55.7 11 0.00023 36.6 3.0 29 19-47 24-53 (177)
455 PRK12814 putative NADPH-depend 53.1 7.6 0.00016 46.4 1.9 19 631-649 611-629 (652)
456 COG1034 NuoG NADH dehydrogenas 52.5 5.8 0.00013 47.0 0.8 18 609-626 187-204 (693)
457 KOG1247|consensus 52.4 7.6 0.00017 42.5 1.6 91 21-113 19-128 (567)
458 KOG1247|consensus 52.0 9.6 0.00021 41.7 2.3 57 261-332 337-393 (567)
459 PRK13552 frdB fumarate reducta 50.5 6.1 0.00013 40.8 0.5 19 634-652 147-165 (239)
460 COG1941 FrhG Coenzyme F420-red 47.2 7.8 0.00017 39.4 0.6 21 637-657 191-211 (247)
461 KOG2713|consensus 44.3 61 0.0013 34.0 6.5 77 24-103 19-104 (347)
462 PTZ00305 NADH:ubiquinone oxido 43.5 8.6 0.00019 40.5 0.3 26 633-658 209-238 (297)
463 KOG1195|consensus 42.0 73 0.0016 36.1 7.1 29 19-47 111-141 (567)
464 PRK05352 Na(+)-translocating N 39.9 15 0.00033 41.6 1.6 20 603-622 410-431 (448)
465 smart00422 HTH_MERR helix_turn 39.8 46 0.001 26.6 4.1 22 292-313 49-70 (70)
466 KOG2145|consensus 37.9 22 0.00048 37.2 2.2 62 24-86 93-161 (397)
467 KOG0432|consensus 35.9 59 0.0013 39.3 5.5 25 302-326 649-673 (995)
468 TIGR01936 nqrA NADH:ubiquinone 35.6 17 0.00037 41.1 1.1 18 604-621 410-429 (447)
469 PF08671 SinI: Anti-repressor 34.9 52 0.0011 22.4 2.9 20 293-312 9-28 (30)
470 COG4624 Iron only hydrogenase 34.1 13 0.00028 40.6 -0.1 52 606-658 2-56 (411)
471 TIGR00234 tyrS tyrosyl-tRNA sy 33.8 49 0.0011 36.7 4.3 39 21-60 33-72 (377)
472 KOG0434|consensus 29.5 1.2E+02 0.0026 35.8 6.4 89 24-117 46-174 (1070)
473 COG0348 NapH Polyferredoxin [E 28.0 21 0.00046 39.6 0.3 18 607-624 246-263 (386)
474 COG3592 Uncharacterized conser 27.1 19 0.00041 29.1 -0.2 54 600-656 17-72 (74)
475 KOG4426|consensus 26.0 51 0.0011 36.5 2.6 43 19-61 189-235 (656)
476 PRK12810 gltD glutamate syntha 25.8 14 0.00031 42.1 -1.6 21 603-623 41-63 (471)
477 KOG1799|consensus 25.3 26 0.00056 37.6 0.3 53 598-650 203-259 (471)
478 TIGR01318 gltD_gamma_fam gluta 25.1 17 0.00036 41.6 -1.2 48 605-652 39-97 (467)
479 KOG0433|consensus 23.3 27 0.00058 41.2 -0.1 57 261-328 607-663 (937)
480 KOG4258|consensus 23.2 20 0.00043 42.9 -1.1 18 604-621 248-271 (1025)
No 1
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-132 Score=1098.59 Aligned_cols=502 Identities=56% Similarity=0.994 Sum_probs=482.6
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
|+| |||||||||||||||||+|++||++|+++||+|+||||||||+|+.++|+++|++||+|||++||+ +++|||+
T Consensus 28 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~~d~---~~~~qS~ 104 (554)
T PRK05347 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWSG---ELRYASD 104 (554)
T ss_pred CceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCCCCC---Cceeeec
Confidence 468 999999999999999999999999999999999999999999999999999999999999999987 6999999
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCC
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSK 176 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~ 176 (736)
|+++|+++|++||++|+||+|+||+|+|++.|+.+...|.+|+||++++++++++|++|++|.+++|+++||+|+||.++
T Consensus 105 r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~vlR~Kid~~~~ 184 (554)
T PRK05347 105 YFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASP 184 (554)
T ss_pred CHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEEEEEEeeccCC
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE
Q psy9410 177 NINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256 (736)
Q Consensus 177 ~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~ 256 (736)
|..|+|||++|++.++||++|++|+|||||||||+||||+|||||||||.||.+++++|.|++++||+ ...|.|+
T Consensus 185 n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~-----~~~P~~~ 259 (554)
T PRK05347 185 NINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPI-----PPHPRQY 259 (554)
T ss_pred CCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCC-----CCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 1479999
Q ss_pred EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccC
Q psy9410 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLD 336 (736)
Q Consensus 257 ~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~ 336 (736)
+|+||+++|+|||||++.+||++|.|.|||||||+||++||+|||+|+||+||++++|||+.+..++|+.|+++||++|+
T Consensus 260 ~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nRk~ld 339 (554)
T PRK05347 260 EFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIREDLN 339 (554)
T ss_pred EEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCCCC
Q psy9410 337 IKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNS 415 (736)
Q Consensus 337 ~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~~~ 415 (736)
+.|+|+|||.||++|.|.|++++..+.+++|+ ||++ ++|+|++.|+++||||++||++.++++|+||++
T Consensus 340 ~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~----hP~~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~------ 409 (554)
T PRK05347 340 ENAPRAMAVLDPLKLVITNYPEGQVEELEAPN----HPEDPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVP------ 409 (554)
T ss_pred cCCCceEEEcCCeEEEEEeCCCCceEEEEecC----CCCCCcCceEEEEEcCeEEEEhHHhhccccccccccCC------
Confidence 99999999999999999999887777889999 9999 999999999999999999999999999999999
Q ss_pred CcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCCCcc
Q psy9410 416 GNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIV 495 (736)
Q Consensus 416 g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~~~ 495 (736)
|++||||++++|+|+++++|++|+|++++|+|++++++++ .+..+|++++|||||+.++++++|++||+||++++|+.
T Consensus 410 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~-~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~~~~p~~- 487 (554)
T PRK05347 410 GKEVRLRNAYVIKCEEVVKDADGNITEIHCTYDPDTLSGN-PADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNPAA- 487 (554)
T ss_pred CCEEEecCEEEEEEEEEEEcCCCCEEEEEEEEccccccCC-CccCcccCCEEEeeecCCCEeEEEEEeccccCCCCCCc-
Confidence 9999999999999999999999999999999999888764 23345888999999988899999999999999999986
Q ss_pred cCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 496 NNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 496 ~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
+++|++++||+|+.+..+++|+++..++.++.+||+|.||+...
T Consensus 488 -~~~~~~~iN~~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D 531 (554)
T PRK05347 488 -GKDFLDFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCAD 531 (554)
T ss_pred -cccHhHhcCCCceEEEeEEEcHHHhhCCCCCEEEEEEeeEEEec
Confidence 58999999999999999999999999999999999999996443
No 2
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-127 Score=1055.77 Aligned_cols=490 Identities=39% Similarity=0.671 Sum_probs=470.0
Q ss_pred CCCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy9410 15 KLPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 15 ~~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~ 93 (736)
..+|+| |||||||||||||||||+|++||++|+++||+|+||||||||+|+.++|+++|+++|+|||++||+ +++
T Consensus 47 ~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~----~~~ 122 (574)
T PTZ00437 47 VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDW----VTF 122 (574)
T ss_pred ccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC----CCc
Confidence 457888 999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred ccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 94 ASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
||+|++.||++|++||++|+||+|+||+++|++.|.. +.+++||++++++||++|++|++|.+.+|.++||+|+||
T Consensus 123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~----~~~~~~R~~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~ 198 (574)
T PTZ00437 123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQ----REDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADM 198 (574)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhc----ccCCccccCCHHHHHHHHHHHhhcccccCCeEEEEeCcC
Confidence 9999999999999999999999999999999999974 568999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 174 KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 174 ~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
.++|++|+|+|++|+...+||++|++|+|||||||||+||||+|||||||||.||.+++..|+|++++|+| ..|
T Consensus 199 ~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~wl~~~l~l------~~p 272 (574)
T PTZ00437 199 KSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNL------WRP 272 (574)
T ss_pred CCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHHHHHHhCC------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 889
Q ss_pred ceEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 254 ~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
.||+|++|+++|++||||++.+||++|+|+|||||||+||++||+|||+||||++|+..+|||++++.++|+.|+++||+
T Consensus 273 ~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 273 HVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred ceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeeccccc-ccCcccccccCCCC
Q psy9410 334 DLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFM-EIPTKKYFRLYPPI 411 (736)
Q Consensus 334 ~l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~-~~~~~~~~~l~~~~ 411 (736)
+||+.|+|+|||+||++|.|+|++.. +.+++|+ ||++ ++|+|++.|+++||||++||. +.++++|+||++
T Consensus 353 ~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~----hP~~~~~G~R~i~~~~~iyIe~~D~~~~~~~~~f~rL~~-- 424 (574)
T PTZ00437 353 DLDERCERRLMVIDPIKVVVDNWKGE--REFECPN----HPRKPELGSRKVMFTDTFYVDRSDFRTEDNNSKFYGLAP-- 424 (574)
T ss_pred HhcccCccceEEccceEEEEecCCCc--eEEeccC----CCCCCcCceEEEEEcCeEEEEHHHhhcccccccceecCC--
Confidence 99999999999999999999998753 5678999 9999 999999999999999999998 677899999999
Q ss_pred CCCCCc-EEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCC
Q psy9410 412 GKNSGN-RVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDP 490 (736)
Q Consensus 412 ~~~~g~-~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~ 490 (736)
|+ .||||++++|+|+++++|++|+|++++|.+++++ .+|+|++|||||+.++++++|++||+||+.+
T Consensus 425 ----g~~~vrL~~~~~i~~~~~~~d~~g~v~~~~~~~d~~~--------~~k~k~~IhWvs~~~~v~~evr~Yd~Lf~~~ 492 (574)
T PTZ00437 425 ----GPRVVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFER--------KDKPKTNISWVSATACTPVEVRLYNALLKDD 492 (574)
T ss_pred ----CCeEEEeccEEEEEEEEEEECCCCCEEEEEEEecccc--------cccCCCeEEEeecCCceeEEEEeccccccCC
Confidence 97 8999999999999999999999999999998642 2378889999998889999999999999999
Q ss_pred CCCcccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 491 YPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 491 ~p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
+|+. +++|++++||+|+.+..+++|+++..+++++++||+|.||+...
T Consensus 493 ~p~~--~~~~~~~iNp~s~~~~~g~~E~~~~~~~~~~~~QfeR~Gyf~vD 540 (574)
T PTZ00437 493 RAAI--DPEFLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFGYFVVD 540 (574)
T ss_pred CCCc--cccHhhhCCCCceEEEEEEEchhhhhCCCCCeEEEEEeEEEEeC
Confidence 9986 68999999999999999999999999999999999999997554
No 3
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=1.5e-127 Score=1058.20 Aligned_cols=498 Identities=50% Similarity=0.870 Sum_probs=476.5
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccHHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDI 100 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~ 100 (736)
|||||||||+|||||||+|++||++|+++||+|+|||||||++|+.++|+++|++||+|||++||+ ++++||+|+++
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~---~~~~qS~~~~~ 79 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEG---KIRYSSDYFDE 79 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCC---CceEccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 68999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCC
Q psy9410 101 LYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINM 180 (736)
Q Consensus 101 ~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~ 180 (736)
|+++|++||++|+||+|+||+|+|++.|+.+..+|++++||+++++|++++|++|++|++.+|.++||+|+|+.+++..+
T Consensus 80 ~~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~ 159 (522)
T TIGR00440 80 LYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVM 159 (522)
T ss_pred HHHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceE
Confidence 99999999999999999999999999998777789999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEe
Q psy9410 181 RDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR 260 (736)
Q Consensus 181 ~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~ 260 (736)
+|+|++|++..+|+++|++|+|||||||||+||||+|||||||||+||.+++++|.|+++++++ .+.|.|++|+|
T Consensus 160 rD~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~-----~~~P~~~~F~r 234 (522)
T TIGR00440 160 RDPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHI-----FPRPAQYEFSR 234 (522)
T ss_pred eeeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCc-----cCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 13799999999
Q ss_pred eecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccCCCCC
Q psy9410 261 LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAP 340 (736)
Q Consensus 261 l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~~~~~ 340 (736)
|+++|+|||||++..+|++|+|+|||||||+||++||++||+|+||+|||+++|||+.+..++|..|+++++..+++.++
T Consensus 235 ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~ 314 (522)
T TIGR00440 235 LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAP 314 (522)
T ss_pred ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred ceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCCCCCcEE
Q psy9410 341 RIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRV 419 (736)
Q Consensus 341 r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~~~g~~v 419 (736)
|+|||+||+||.|.|++... +..++|+ ||++ ++|.|.++|+++||||++||++.++++|+||+| |++|
T Consensus 315 r~~av~d~~kl~i~~~~~~~-~~~~~p~----~p~~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~------g~~v 383 (522)
T TIGR00440 315 RAMAVIDPVEVVIENLSDEY-ELATIPN----HPNTPEFGERQVPFTNEFYIDRADFREEANKQYKRLVL------GKEV 383 (522)
T ss_pred ccccccccceEEEecCCCCc-eEEeccC----CCCChhHeeEEEEecceeEEEHHHhhccccccccccCC------CCEE
Confidence 99999999999999987643 4668999 9999 999999999999999999999999999999999 9999
Q ss_pred EecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCCCcccCCc
Q psy9410 420 RLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKD 499 (736)
Q Consensus 420 ~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~~~~~~d 499 (736)
|||++++|+|+++++|++|.|++++|+|++++++++ .+..+|++++|||||+.++++++|++||+||++++|+. +++
T Consensus 384 rL~~~~~i~~~~~~~d~~G~v~~~~~~~~~~~~~~~-~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~~~~p~~--~d~ 460 (522)
T TIGR00440 384 RLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGKE-PADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNPGA--PDD 460 (522)
T ss_pred EeCCEEEEEEEEEEecCCCCEEEEEEEEccccccCC-ccccccCCcEEEeeecCCCeeEEEEecccccCCCCCCc--ccc
Confidence 999999999999999999999999999999887654 23345888999999988899999999999999999997 689
Q ss_pred cccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 500 FKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 500 ~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
|++++||+|+.+.++++|+++..++.++++||+|.||+...
T Consensus 461 ~~~~~np~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D 501 (522)
T TIGR00440 461 FLSVINPESLVIKQGFMEHSLGDAVANKRFQFEREGYFCLD 501 (522)
T ss_pred HhhhCCCCceEEEEEEEchhHhhCCCCCEEEEEEeEEEEEc
Confidence 99999999999999999999999999999999999997443
No 4
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=3.2e-127 Score=1098.93 Aligned_cols=505 Identities=51% Similarity=0.908 Sum_probs=481.9
Q ss_pred CCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccc
Q psy9410 16 LPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94 (736)
Q Consensus 16 ~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~ 94 (736)
..|+| |||||||||||||||||+|++||++|++|||+|+||||||||.|+.++|+++|++||+|||++||+ +++||
T Consensus 28 ~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~wd~---~~~~q 104 (771)
T PRK14703 28 RYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDWGE---HLYYA 104 (771)
T ss_pred CCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCCCCC---CceEe
Confidence 34578 999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred cccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeecc
Q psy9410 95 SDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMK 174 (736)
Q Consensus 95 Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~ 174 (736)
|+|+++|+++|++||++|+||+|+||+++|++.|+.+...|++|+||++++++++++|++|..|.+.+|+++||+|+||.
T Consensus 105 S~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~vlR~Kid~~ 184 (771)
T PRK14703 105 SDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMS 184 (771)
T ss_pred ecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeEEEEEeecc
Confidence 99999999999999999999999999999999998877789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCc
Q psy9410 175 SKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPK 254 (736)
Q Consensus 175 ~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~ 254 (736)
++|+.|+|||+||+++++||++|++|+|||||||||+||||+|||||||||.||.+++++|.||+++||+. ...|.
T Consensus 185 ~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~----~~~P~ 260 (771)
T PRK14703 185 SPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPW----PPRPR 260 (771)
T ss_pred CCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCC----CCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999640 12499
Q ss_pred eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcc
Q psy9410 255 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 334 (736)
Q Consensus 255 ~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~ 334 (736)
|++|+||++.|++||||++..||++|.|+||||||||||++||+|||+|+||++||..+|||+.++.++|+.|+++||++
T Consensus 261 ~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R~~ 340 (771)
T PRK14703 261 QYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDD 340 (771)
T ss_pred eeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc--CCCceEeeecceeeeecccccccCcccccccCCCCC
Q psy9410 335 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY--KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIG 412 (736)
Q Consensus 335 l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~--~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~ 412 (736)
||+.|||+|||+||++|.|.|++++..+.+++|+ ||++ ++|+|+++|+++||||++||++.++++|++|++
T Consensus 341 ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~----hp~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~--- 413 (771)
T PRK14703 341 LNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPY----WPHDVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTP--- 413 (771)
T ss_pred hccCCCceEEEcCCeEEEEEeCCCCceEEEeccC----CCCCCccCceEEEEEcCeEEEEhhHhhccccccccccCC---
Confidence 9999999999999999999999887778889999 9996 899999999999999999999999999999999
Q ss_pred CCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCC
Q psy9410 413 KNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYP 492 (736)
Q Consensus 413 ~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p 492 (736)
|++||||++++|+|+++.+|++|+|++++|+|++++.++.+. .+|++++|||||+.++++++|++||+||++++|
T Consensus 414 ---g~~vrL~~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~--~~k~k~~ihWv~~~~~v~~~vr~Yd~Lf~~~~p 488 (771)
T PRK14703 414 ---GREVRLRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDT--GRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQP 488 (771)
T ss_pred ---CCEEEecceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCcc--CCcCCcEEEEeecCCCeeEEEEecccccCCCCC
Confidence 999999999999999999999999999999999887755432 348889999999888999999999999999999
Q ss_pred CcccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 493 NIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 493 ~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
+.. ++||++++||+|+.+..+++||++.++++++++||+|.||+...
T Consensus 489 ~~~-~~~~~~~lN~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gyf~~D 535 (771)
T PRK14703 489 EAA-DEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWAD 535 (771)
T ss_pred Ccc-ccchHhhcCCCCceeEccEEcHhHhhCCCCCEEEEEEeEEEEEc
Confidence 843 68999999999999999999999999999999999999997543
No 5
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=4e-126 Score=1075.36 Aligned_cols=494 Identities=45% Similarity=0.781 Sum_probs=467.9
Q ss_pred CCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccc
Q psy9410 16 LPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94 (736)
Q Consensus 16 ~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~ 94 (736)
.+|+| |||||||||||||||||+|++||++|+++||+|+||||||||.|+.++|+++|++||+|||++|++ ++||
T Consensus 261 t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~~~I~edL~WLG~~~d~----~~~q 336 (788)
T PLN02859 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIEEIVEWMGWEPFK----ITYT 336 (788)
T ss_pred cCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHHHHHHHHHHHcCCCCCC----cccc
Confidence 57888 999999999999999999999999999999999999999999999999999999999999999997 9999
Q ss_pred cccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeecc
Q psy9410 95 SDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMK 174 (736)
Q Consensus 95 Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~ 174 (736)
|+|++.+|++|.+||++|+||+|+||+++|+..|. .+.+|+||++++++++.+|++|+.|.+.+|.++||+|+||.
T Consensus 337 Sd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~----~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~ 412 (788)
T PLN02859 337 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQ 412 (788)
T ss_pred cHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHh----hhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCC
Confidence 99999899999999999999999999999999996 35688999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCc
Q psy9410 175 SKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPK 254 (736)
Q Consensus 175 ~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~ 254 (736)
++|..|+|+|++|+...+||++|++|+|||||||||+||||+|||||||||.||.+++++|.||+++||| ..|.
T Consensus 413 ~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg~------~~P~ 486 (788)
T PLN02859 413 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLGL------YQPY 486 (788)
T ss_pred CCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcCC------CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCc-cccHHHHHHHHhc
Q psy9410 255 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDS-WINIEILEQALRD 333 (736)
Q Consensus 255 ~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~-~~~~~~l~~~~~~ 333 (736)
|+||++|+++|++||||++..||++|+|+|||||||+||++||+|||+|+||+||+.++|||+.+. .++|+.|++++++
T Consensus 487 ~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~ 566 (788)
T PLN02859 487 VWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIRE 566 (788)
T ss_pred EEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred ccCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCC
Q psy9410 334 DLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIG 412 (736)
Q Consensus 334 ~l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~ 412 (736)
+|+++++|+|||+||+||.|+|++++..+.+.+|+.- .||++ ++|+|+++|+++||||++||++.++++|+||+|
T Consensus 567 ~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P-~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~~~~rL~p--- 642 (788)
T PLN02859 567 ELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWP-DAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAP--- 642 (788)
T ss_pred hhCCcCcchheecCCeEEEEecCCCCceeecccccCC-CCCCCccCceEEEEECCeEEEEhHHhhccccccceecCC---
Confidence 9999999999999999999999998877777775400 05555 899999999999999999999999999999999
Q ss_pred CCCCcEEEecccEEEEEeeee-ecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCC----CCeeeEEEeCCCcC
Q psy9410 413 KNSGNRVRLRYGYVVECTGFK-KNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKS----HALSIEARLYDRLF 487 (736)
Q Consensus 413 ~~~g~~v~L~~~~~i~~~~~~-~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~----~~~~~ev~~yd~L~ 487 (736)
|++|+|+++++|+|++++ +|.+|+|++|+|+|++++. .|+|++|||||+. +.+++|+|+||+||
T Consensus 643 ---g~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~--------~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf 711 (788)
T PLN02859 643 ---GKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKK--------TKPKGVLHWVAEPSPGVEPLKVEVRLFDKLF 711 (788)
T ss_pred ---CCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCC--------CccCceEEeeecCCCCCCceeEEEEeehhhc
Confidence 999999999999999988 8999999999999996532 2888999999973 57999999999999
Q ss_pred CCCCCCcccCCccccccCCCceeeE-EEEecccccccCccccccccccccCccc
Q psy9410 488 IDPYPNIVNNKDFKLLINPNSKKVI-SAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 488 ~~~~p~~~~~~d~~~~inp~S~~~~-~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
++++|+. .++|++++||+|+.++ ++++|+++..++++++|||+|.||+.+.
T Consensus 712 ~~~~p~~--~~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D 763 (788)
T PLN02859 712 LSENPAE--LEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVD 763 (788)
T ss_pred CCCCCcc--cccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEecc
Confidence 9999987 4789999999999987 5899999999999999999999997544
No 6
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=5.8e-124 Score=1027.86 Aligned_cols=478 Identities=31% Similarity=0.503 Sum_probs=450.7
Q ss_pred CCCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy9410 15 KLPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 15 ~~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~ 93 (736)
.+.|+| |||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|++||+|||++||+ ++|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~----~~~ 82 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDS----VSF 82 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCC----Ccc
Confidence 346778 999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred ccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 94 ASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
||+|+++|+++|++||++|+||+|+||+|+|++.|+. +.+++||++++++++++|++|+.|.+.++++++|+|+++
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~----~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~ 158 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERAD----RAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDM 158 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhh----hccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcc
Confidence 9999999999999999999999999999999999864 567899999999999999999999988999999999999
Q ss_pred cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 174 KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 174 ~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
.+++.+++|||++|+++++||++|++|+|||||||||+||||+|||||||||.||.+++++|.||+++||| ..|
T Consensus 159 ~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~------~~P 232 (523)
T PLN03233 159 QSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGL------RRP 232 (523)
T ss_pred cCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCC------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred ceEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 254 ~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
.+++|+||++.|+|||||++++||++|.|+||||||||||++||+|||+|+||++|++.+|+|++++.++|+.||++||+
T Consensus 233 ~~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 233 RIHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKK 312 (523)
T ss_pred eeeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEE--eceEEEEecCCCCceE-EEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCC
Q psy9410 334 DLDIKAPRIMAVL--NPIKLIISNFLDNQEI-ECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYP 409 (736)
Q Consensus 334 ~l~~~~~r~~~v~--~~~kl~~~n~~~~~~~-~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~ 409 (736)
+||+.|+|+|||. ||++|+|.|++.+..+ .+++|+ ||++ ++|+|+++|+++||||++||+ +|.+
T Consensus 313 ~ld~~a~R~m~V~~~~pv~v~i~n~~~~~~~~~~~~p~----hP~~~~~G~r~v~~~~~iyIe~~D~~--------~l~~ 380 (523)
T PLN03233 313 EIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDC----HPKDPGFGKRAMRICDEVLLEKADTE--------DIQL 380 (523)
T ss_pred HhcccCCceEEEccCCcEEEEecCCCCccceecccccc----CCCCCCCceEEEEECCcEEEEHhHHh--------hcCC
Confidence 9999999999998 5999999999876433 348999 9999 999999999999999999997 5778
Q ss_pred CCCCCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccC-CCCeeeEEEeCCCcCC
Q psy9410 410 PIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK-SHALSIEARLYDRLFI 488 (736)
Q Consensus 410 ~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~-~~~~~~ev~~yd~L~~ 488 (736)
|++||||++++|+|+++.+|..|++. ++ +..+|++++|||||+ ++++++++++||+||+
T Consensus 381 ------g~~vrL~~~~~i~~~~~~~d~~~~~~-------~~-------~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~ 440 (523)
T PLN03233 381 ------GEDIVLLRWGVIEISKIDGDLEGHFI-------PD-------GDFKAAKKKISWIADVSDNIPVVLSEFDNLII 440 (523)
T ss_pred ------CCEEEeCceeeEEEEEEEecCceEEe-------eC-------CCCcccccEEEEcCCCCCccceEEEecccccC
Confidence 99999999999999999888776643 11 123488889999984 6789999999999999
Q ss_pred CCCCCcccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 489 DPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 489 ~~~p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
+++|++ +++|++++||+|+.+.++++|+++..+++++.+||+|.||+...
T Consensus 441 ~~~~~~--~~~~~~~~n~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 490 (523)
T PLN03233 441 KEKLEE--DDKFEDFINPDTLAETDVIGDAGLKTLKEHDIIQLERRGFYRVD 490 (523)
T ss_pred CCCCCc--ccChhhhcCCCceEEEeEEEchhHhhCCCCCeEEEEEeeEEEEc
Confidence 999987 69999999999999999999999999999999999999997543
No 7
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-121 Score=1016.71 Aligned_cols=485 Identities=31% Similarity=0.492 Sum_probs=458.7
Q ss_pred CCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccc
Q psy9410 16 LPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94 (736)
Q Consensus 16 ~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~ 94 (736)
+.|+| |||||||||||||||||+|++||++||++||+|+||||||||.|+.++|+++|++||+|||++||+ +++||
T Consensus 49 ~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe---~~~~Q 125 (601)
T PTZ00402 49 EEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDV---GPTYS 125 (601)
T ss_pred CCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCC---ceeec
Confidence 35678 999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred cccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeecc
Q psy9410 95 SDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMK 174 (736)
Q Consensus 95 Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~ 174 (736)
|+|+++|+++|++||++|+||+|+|++|+|++.|. .|++++||++++++++++|+.|..|.+.++.+++|++++|.
T Consensus 126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~----~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~ 201 (601)
T PTZ00402 126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRF----DGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVD 201 (601)
T ss_pred cccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHh----CCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccC
Confidence 99999999999999999999999999999988874 47899999999999999999999998888899999999999
Q ss_pred CCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCc
Q psy9410 175 SKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPK 254 (736)
Q Consensus 175 ~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~ 254 (736)
+++.+++|||++|++..+||++|++|++||||||||+||||+|||||||||.||.+++++|.||+++||| ..|.
T Consensus 202 ~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~------~~P~ 275 (601)
T PTZ00402 202 NENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGI------RKPI 275 (601)
T ss_pred CCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCC------CCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcc
Q psy9410 255 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 334 (736)
Q Consensus 255 ~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~ 334 (736)
++||++|+++|+|||||++..+|++|+|.||||||||||++||||||+|+||++|+..+|++++++.|+|+.|+++|+++
T Consensus 276 ~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~ 355 (601)
T PTZ00402 276 VEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQI 355 (601)
T ss_pred EEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCC
Q psy9410 335 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGK 413 (736)
Q Consensus 335 l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~ 413 (736)
|++.|+|+|||+||++|+++|.+++..+.+++|+ ||++ ++|+|+++|+++||||++||+ +|.+
T Consensus 356 l~~~a~R~maV~~p~kv~i~~~~~~~~~~~~~p~----hP~~~~~G~r~i~~~~~iyIe~~D~~--------~l~~---- 419 (601)
T PTZ00402 356 LDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLL----HKKVPDMGEKTYYKSDVIFLDAEDVA--------LLKE---- 419 (601)
T ss_pred HhhcCCceEEEcCCCEEEEEECCCCcceEeeccC----CCCCcccCceEEEECCeEEEEhhhHh--------hcCC----
Confidence 9999999999999999999999877667788999 9999 999999999999999999997 5878
Q ss_pred CCCcEEEecccEEEEEeeeee-cCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCC-CCeeeEEEeCCCcCCCCC
Q psy9410 414 NSGNRVRLRYGYVVECTGFKK-NKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKS-HALSIEARLYDRLFIDPY 491 (736)
Q Consensus 414 ~~g~~v~L~~~~~i~~~~~~~-d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~-~~~~~ev~~yd~L~~~~~ 491 (736)
|++||||+++++.+.++.+ |++|+|++++++++++ +..+|++++|||||+. +.+++++|+||+||++++
T Consensus 420 --g~~vrL~~~gn~~i~~~~~~~~~g~v~~~~~~~~~~-------~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~ 490 (601)
T PTZ00402 420 --GDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLE-------GDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKK 490 (601)
T ss_pred --CCEEEEeccCCEEEEEEEeeCCCCcEEEEEEEECCC-------CCCCcCCCeEEEecCCCCcceEEEEecccccCCCC
Confidence 9999999887777766653 5789999999998853 2345889999999985 678999999999999999
Q ss_pred CCcccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 492 PNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 492 p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
|+. +++|++++||+|+.+..+++||++..+++++++||+|.||+...
T Consensus 491 p~~--~~~~~~~ln~~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D 537 (601)
T PTZ00402 491 PDP--EESIDDIIAPVTKYTQEVYGEEALSVLKKGDIIQLERRGYYIVD 537 (601)
T ss_pred CCc--cccHHHhcCCCChheEEEEEchhHhhCCCCCEEeEEEeEEEEEe
Confidence 987 57999999999999999999999999999999999999997544
No 8
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=6.2e-119 Score=1036.09 Aligned_cols=481 Identities=31% Similarity=0.496 Sum_probs=460.1
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
.|+| |||||||||||||||||+|++||++||+|||+||||||||||+|+.++|+++|++||+|||++||+ ++|||
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~----~~~qS 286 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDA----VTYTS 286 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCC----ccccc
Confidence 4678 999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+|+++|+++|++||++|+||+|+|+.+++++.|.. |++++||++++++++++|++|++|.+.++.+++|+|+||.+
T Consensus 287 ~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~----~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~ 362 (722)
T PLN02907 287 DYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMD----GIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQD 362 (722)
T ss_pred ccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhc----CCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCC
Confidence 99999999999999999999999999999998863 79999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
+|.+++|+|++|+++.+||++|++|+|||||||||+||||+|||||||||.||.+++++|.||+++||| ..|.|
T Consensus 363 ~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~------~~p~~ 436 (722)
T PLN02907 363 PNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGL------RKVHI 436 (722)
T ss_pred CCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCC------CCCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhccc
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDL 335 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l 335 (736)
++|+||+++|+|||||++.+||++|+|+|||||||||+++||||||+|+||++|+..+|+|++++.|+|++|+++|++.|
T Consensus 437 ~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~i 516 (722)
T PLN02907 437 WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKII 516 (722)
T ss_pred EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEec--eEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCC
Q psy9410 336 DIKAPRIMAVLNP--IKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIG 412 (736)
Q Consensus 336 ~~~~~r~~~v~~~--~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~ 412 (736)
|+.+||+|+|+|| +++.++|+++. .+.+++|+ ||++ ++|+|+++|+++||||++||. +|.+
T Consensus 517 d~~a~R~~~v~~p~~v~~~i~~~~~~-~~~~~~p~----hp~~~~~g~r~~~~~~~i~i~~~D~~--------~l~~--- 580 (722)
T PLN02907 517 DPVCPRHTAVLKEGRVLLTLTDGPET-PFVRIIPR----HKKYEGAGKKATTFTNRIWLDYADAE--------AISE--- 580 (722)
T ss_pred ccCCCceeEEecCCEEEEEEcCCCCC-ceeeeccC----CCCCCccceEEEEECCcEEEEcchHh--------hcCC---
Confidence 9999999999999 88889998764 46778999 9999 999999999999999999997 4777
Q ss_pred CCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCC-CCeeeEEEeCCCcCCCCC
Q psy9410 413 KNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKS-HALSIEARLYDRLFIDPY 491 (736)
Q Consensus 413 ~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~-~~~~~ev~~yd~L~~~~~ 491 (736)
|++||||+++++.|+++.+|++|+|++++|+++++ +..+|++++|||||+. +.++++|++||+||++++
T Consensus 581 ---g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~-------~~~~k~k~~i~Wv~~~~~~~~~~~~~~d~l~~~~~ 650 (722)
T PLN02907 581 ---GEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLE-------GSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKK 650 (722)
T ss_pred ---CCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccc-------cCCCcCCCeEEEecCCCCceEEEEEccccccccCC
Confidence 99999999999999999999999999999999864 3355888999999976 589999999999999999
Q ss_pred CCcccCCccccccCCCceeeEEEEecccccccCccccccccccccCcc
Q psy9410 492 PNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQT 539 (736)
Q Consensus 492 p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~ 539 (736)
|++ +++|++++||+|+.+..+++||++..+++++.+||||.||+..
T Consensus 651 ~~~--~~~~~~~~n~~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gy~~~ 696 (722)
T PLN02907 651 LEE--DDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRC 696 (722)
T ss_pred Ccc--ccchhHhcCCCceeEEEEEEcHhHhhCCCCCeEEEEEeEEEEE
Confidence 987 6899999999999999999999999999999999999999644
No 9
>KOG1148|consensus
Probab=100.00 E-value=5.1e-120 Score=962.46 Aligned_cols=494 Identities=44% Similarity=0.737 Sum_probs=472.1
Q ss_pred CCCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy9410 15 KLPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 15 ~~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~ 93 (736)
..+|+| |||||+|||+||||||+++.+|+.||+.+||.+.||||||||+.+.++|.++|.++.+|||+++.. ++|
T Consensus 244 ~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~k----vTy 319 (764)
T KOG1148|consen 244 RTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYK----VTY 319 (764)
T ss_pred hhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHhCCCcee----eec
Confidence 468999 999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred ccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 94 ASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
.||||+.+|++|.+||++|+||+|+|+.|||++.|+... ..|+||++++||++.+|+.|+.|++++|+++||+|.++
T Consensus 320 sSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~---~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAtLRmK~dl 396 (764)
T KOG1148|consen 320 SSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNE---RLSPWRDRPIEESLRLFEDMRDGKYEEGEATLRMKQDL 396 (764)
T ss_pred chhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCC---CCCccccCcHHHHHHHHHHHhcCCcCcChhheeeeeec
Confidence 999999999999999999999999999999999996422 37999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 174 KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 174 ~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
+++|+.|.|+|.||+...+|||+|++|+|||||||++++.|+++.|||++|+.||..++..|+||+.+|++ ..|
T Consensus 397 ~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~i------Y~P 470 (764)
T KOG1148|consen 397 ESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEI------YCP 470 (764)
T ss_pred cCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhc------ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred ceEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 254 ~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
.||+|||||++|++||||++.+||.+|+|.|||||||+||.+|||||+.|+||.+||..+|++.+...++...|++++|+
T Consensus 471 ~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VRd 550 (764)
T KOG1148|consen 471 VQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVRD 550 (764)
T ss_pred hhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCC
Q psy9410 334 DLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIG 412 (736)
Q Consensus 334 ~l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~ 412 (736)
.|+..+||.|+|++|.||+|+|++++..+.+.+|+ .|++ .+|.|+++|++.||||++||+++++|+|+||+|
T Consensus 551 ~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd----~P~dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtp--- 623 (764)
T KOG1148|consen 551 YLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPD----FPGDPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTP--- 623 (764)
T ss_pred HHhccCcceEEeecceEEEEecCCcchhhhccCCC----CCCCCccccccccccceEEEEcccccccCCcchhccCC---
Confidence 99999999999999999999999999888999999 9999 999999999999999999999999999999999
Q ss_pred CCCCcEEEecc-cEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCC
Q psy9410 413 KNSGNRVRLRY-GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPY 491 (736)
Q Consensus 413 ~~~g~~v~L~~-~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~ 491 (736)
|++|.|++ +++|....+.+|..|.|++|+++|++.++ + +|+|+.|||||. +++.||||+|++||+.++
T Consensus 624 ---gQpVGLr~~~~vi~~~~vvkD~~g~v~ei~v~yd~~s~-----~--~KPK~fIhWVse-~Pv~vEvRlye~LFks~N 692 (764)
T KOG1148|consen 624 ---GQPVGLRYAGYVIRVVKVVKDDEGTVIEIHVEYDPASK-----K--KKPKAFIHWVSE-SPVKVEVRLYEQLFKSEN 692 (764)
T ss_pred ---CCcceeEeecceEEEEEEeeCCCCceEEEEEEeccccc-----c--cCCceeEEeccC-CCeEeehhHHHHHhccCC
Confidence 99999987 67788888889999999999999996322 2 389999999997 679999999999999999
Q ss_pred CCcccCCccccccCCCceeeEE-EEecccccccCccccccccccccCccc
Q psy9410 492 PNIVNNKDFKLLINPNSKKVIS-AYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 492 p~~~~~~d~~~~inp~S~~~~~-~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
|++. .+.|+.+|||+|+.++. ++++..+....+.++|||+|.||+.+.
T Consensus 693 P~d~-~e~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VD 741 (764)
T KOG1148|consen 693 PADL-NEVFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVD 741 (764)
T ss_pred ccch-hHHHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcceeEec
Confidence 9987 56699999999999985 688999999999999999999997553
No 10
>KOG1147|consensus
Probab=100.00 E-value=2.3e-111 Score=888.42 Aligned_cols=479 Identities=33% Similarity=0.511 Sum_probs=453.0
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
-|+| |||||+|+||||||||++||+|++||..|+|++|+|||||||+++..+|++.|++||..|||++|. .+|+|
T Consensus 198 ~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~----~TyTS 273 (712)
T KOG1147|consen 198 MGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDR----VTYTS 273 (712)
T ss_pred cCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcce----eeech
Confidence 4578 999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+||+.+.+++.+||+.|+||+++.+.|+|+..|+ .|.+|.||+.++|+|+++|++|..|...+-.+|+|+|+||++
T Consensus 274 DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~----~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s 349 (712)
T KOG1147|consen 274 DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDERE----QGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSS 349 (712)
T ss_pred hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHh----ccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccC
Confidence 9999999999999999999999999999999996 588999999999999999999999986666899999999999
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
+|+.||||||||.+-.+|||||++|++||||||||+|.|+++||||.+|+.|++++.++|+|++++|++ ..|++
T Consensus 350 ~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~L------Rkp~i 423 (712)
T KOG1147|consen 350 PNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGL------RKPHI 423 (712)
T ss_pred CCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcC------Cccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhccc
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDL 335 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l 335 (736)
|+|+|||+..++||||++.++|++|.|+||||||+||++|.+|||++.|+|++|++.+|.|++...++|+++|++|++.|
T Consensus 424 wefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvI 503 (712)
T KOG1147|consen 424 WEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVI 503 (712)
T ss_pred eehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeceEEE--EecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCC
Q psy9410 336 DIKAPRIMAVLNPIKLI--ISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIG 412 (736)
Q Consensus 336 ~~~~~r~~~v~~~~kl~--~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~ 412 (736)
||+|||+.||..+..+. +.|.+.+. .....|. |||| ++|.+++.|++.||||++|+.. |..
T Consensus 504 DPVapRytav~~~~~V~v~i~~~~~~~-~~~~~Pk----HkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~--- 567 (712)
T KOG1147|consen 504 DPVAPRYTAVVKEDRVEVTITNGPQEE-YIEVSPK----HKKNPELGEKKVIYSKKILLEQADAEA--------LKE--- 567 (712)
T ss_pred CCCCccceeeccCceEEEecCCCCCcc-hhhcccc----CCCCcccCccceeeccceeEeccchhh--------hcC---
Confidence 99999999999765544 44544432 2345788 9999 9999999999999999999873 555
Q ss_pred CCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCC-CCeeeEEEeCCCcCCCCC
Q psy9410 413 KNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKS-HALSIEARLYDRLFIDPY 491 (736)
Q Consensus 413 ~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~-~~~~~ev~~yd~L~~~~~ 491 (736)
|++|+||+|+|+.++.+.+|++|+|+.+.+++. +++++||+|.+++||+.. ..+++++..||+|++++.
T Consensus 568 ---gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~Ln-------ldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lItK~~ 637 (712)
T KOG1147|consen 568 ---GEEVTLMNWGNAIIKKINKDASGKVTSLSAKLN-------LDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLITKDK 637 (712)
T ss_pred ---CcEEEEEeccceeeEEeeccCCceEEEEEEEec-------cCCccccccceeEEeccCCCccceEEeechhhcchhh
Confidence 999999999999999999999999999999986 466789999999999975 679999999999999999
Q ss_pred CCcccCCccccccCCCceeeEEEEecccccccCccccccccccccC
Q psy9410 492 PNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLP 537 (736)
Q Consensus 492 p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~ 537 (736)
.++ ++||.+++||+|.....++.++++++++.|+.+|++|.||+
T Consensus 638 le~--dEd~k~f~n~~t~~~~~~~gd~~ikn~KkGDIIQ~eRkGfy 681 (712)
T KOG1147|consen 638 LEK--DEDFKDFVNPNTVKETLMLGDPAIKNLKKGDIIQLERKGFY 681 (712)
T ss_pred ccc--chhHHHhcCCCccccchhccChhhhccccCceEEEeccceE
Confidence 887 69999999999999999999999999999999999999985
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7e-109 Score=919.72 Aligned_cols=451 Identities=31% Similarity=0.523 Sum_probs=423.0
Q ss_pred CCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCc--ccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 16 LPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNP--LKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 16 ~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~--~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
++|+| |||||||||||||||||+|++||++||+|||+|||||||||| .|+.++|+++|++||+|||++||+ ++
T Consensus 98 e~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~----~~ 173 (567)
T PRK04156 98 EKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDE----VV 173 (567)
T ss_pred CCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCC----cc
Confidence 36778 999999999999999999999999999999999999999999 999999999999999999999998 99
Q ss_pred cccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee
Q psy9410 93 YASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN 172 (736)
Q Consensus 93 ~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~ 172 (736)
+||+|++.|+++|++||++|+||+|+||++++++.|. .|.+++||++++++++++|++|.+|++.+|++++|+|++
T Consensus 174 ~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~----~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d 249 (567)
T PRK04156 174 IQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRD----AGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTD 249 (567)
T ss_pred CcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHh----cCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECc
Confidence 9999999999999999999999999999999988885 467899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCC
Q psy9410 173 MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPF 252 (736)
Q Consensus 173 ~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~ 252 (736)
+.++++.++|||+||++..+||++|++|+||||||||++||||+|||||||||.||.+++++|.|++++||| ..
T Consensus 250 ~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~------~~ 323 (567)
T PRK04156 250 LEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGW------EY 323 (567)
T ss_pred ccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CceEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 253 PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 253 p~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|.++||++|+++|+|||||++..+|++|.++||||||++||++||++||+|+||++|++.+||++++..|+|+.|+++||
T Consensus 324 P~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 324 PETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINR 403 (567)
T ss_pred ceEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCC
Q psy9410 333 DDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPI 411 (736)
Q Consensus 333 ~~l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~ 411 (736)
+.|++.|+|+|||.||++|.|.|.+. ..+++|+ ||++ ++|+|+++|+++|||+++||++.
T Consensus 404 ~~ld~~a~R~~~V~~pv~v~i~~~~~---~~~~~p~----hP~~~~~G~r~v~~~~~i~i~~~D~~~~------------ 464 (567)
T PRK04156 404 KLIDPIANRYFFVRDPVELEIEGAEP---LEAKIPL----HPDRPERGEREIPVGGKVYVSSDDLEAE------------ 464 (567)
T ss_pred HHHhccCCceEEECCceEEEEcCCCc---eEEEcCC----CCCCCCCceEEEEECCeEEEEHHHHhhc------------
Confidence 99999999999999999999999643 4678999 9999 99999999999999999999842
Q ss_pred CCCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCc-eeEEeccCCCCeeeEEEeCCCcCCCC
Q psy9410 412 GKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVK-GNIHWISKSHALSIEARLYDRLFIDP 490 (736)
Q Consensus 412 ~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~-~~i~Wvs~~~~~~~ev~~yd~L~~~~ 490 (736)
|++||||+++||+|+++. +++|+|++++.+ +.+ |++ ++|||||+.++++++|+.
T Consensus 465 ----g~~vrL~~~~nv~~~~~~--------~~~~~~~~~~~~---~~~--k~~~~~i~Wv~~~~~v~~~v~~-------- 519 (567)
T PRK04156 465 ----GKMVRLMDLFNVEITGVS--------VDKARYHSDDLE---EAR--KNKAPIIQWVPEDESVPVRVLK-------- 519 (567)
T ss_pred ----CCEEEeeeEEEEEEEEEE--------EEEEEEcCCccc---ccc--ccCCCEEEEccCCCCeeEEEEC--------
Confidence 899999999999998764 578999987662 333 776 589999988899999984
Q ss_pred CCCcccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 491 YPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 491 ~p~~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
|+. .+..+++||.+..++.++.+||+|.||+...
T Consensus 520 -~~~---------------~~~~g~~E~~~~~~~~~~~~QfeR~Gf~~~D 553 (567)
T PRK04156 520 -PDG---------------GDIEGLAEPDVADLEVDDIVQFERFGFVRID 553 (567)
T ss_pred -CCc---------------eEEEEEEchhHhhCCCCCEEEEEEeEEEEEe
Confidence 221 3567999999999999999999999997543
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=1.3e-106 Score=900.40 Aligned_cols=452 Identities=29% Similarity=0.441 Sum_probs=409.6
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
.|+| |||||||||||||||||+|++||++|++|||+|+||||||||+|+.++|+++|++||+|||+.||+ +++||
T Consensus 91 ~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~----~~~qS 166 (560)
T TIGR00463 91 MGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDE----VVYQS 166 (560)
T ss_pred CCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCc----ccccc
Confidence 3568 999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+|++.|+++|++||++|+||+|+||+++|++.|. .|++|+||++++++++++|++|++|.+.+++++||+|+|+.+
T Consensus 167 d~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~----~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~ 242 (560)
T TIGR00463 167 DRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRN----DGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKH 242 (560)
T ss_pred ccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHh----CCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcC
Confidence 9999999999999999999999999999999985 478999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
+|+.++|||++|+++++||++|++|++||||||||+||||+|||||||||.||.+++++|.+++.++|| ..|..
T Consensus 243 ~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~------~~P~~ 316 (560)
T TIGR00463 243 KNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW------ELPEF 316 (560)
T ss_pred CCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCC------CCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 67877
Q ss_pred EEEEeeecCCe-ecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcc
Q psy9410 256 YEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 334 (736)
Q Consensus 256 ~~f~~l~~~g~-klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~ 334 (736)
.||.++.+++. +||||.....+.+|.+.||||||++||++||++||+|+||++|++.+|||++++.++|+.|+++||+.
T Consensus 317 ~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~ 396 (560)
T TIGR00463 317 IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKI 396 (560)
T ss_pred EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHH
Confidence 78877776643 77766644444458999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCC
Q psy9410 335 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGK 413 (736)
Q Consensus 335 l~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~ 413 (736)
||+.|+|+|||.||+++.|.|+++. ...++|+ ||++ ++|+|+++|+++||||++||++ .+
T Consensus 397 id~~a~R~~~V~~p~~v~i~~~~~~--~~~~~p~----hp~~~~~G~r~v~~~~~i~i~~~D~~~---------~~---- 457 (560)
T TIGR00463 397 IDPIARRYFFIWNPVKIEIEGAPEP--KIVERPL----HPDNPEVGERKLIYYGEIYVDKDDLEV---------IE---- 457 (560)
T ss_pred hCcCCCceEEEcCCcEEEEecCCCC--eeEEccC----CCCCCCCceEEEEECCeEEEEHHHHhh---------CC----
Confidence 9999999999999999999998753 3568999 9999 9999999999999999999984 35
Q ss_pred CCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCCC
Q psy9410 414 NSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPN 493 (736)
Q Consensus 414 ~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~ 493 (736)
|++||||+++||+|+++.++ |.+ +...++ ++.++|++++|||||+.++++++|+.||+|++.
T Consensus 458 --g~~vrL~~~~ni~~~~~~~~--~~~------~~~~~~----~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~~~---- 519 (560)
T TIGR00463 458 --GEEVRLMDWGNVIITKKNDD--GSM------YHSLNL----EGARKKGKHIIHWLPDKDAVKVKVIMPDHLITE---- 519 (560)
T ss_pred --CCEEEEeecccEEEEEEeCC--CcE------Eecccc----ccccccCCCEEEECcCCCceEEEEEcCcccccc----
Confidence 99999999999999887543 332 222222 344557889999999888999999999888543
Q ss_pred cccCCccccccCCCceeeEEEEecccccccCccccccccccccCcc
Q psy9410 494 IVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQT 539 (736)
Q Consensus 494 ~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~ 539 (736)
+++|+.+...+.++.+||+|.||+..
T Consensus 520 --------------------~~~E~~~~~~~~~~~vQfeR~Gy~~~ 545 (560)
T TIGR00463 520 --------------------GRLEEDASFEEVGDIIQFERFGFYRL 545 (560)
T ss_pred --------------------CccCcchhhcCCCCEEEEEEeEEEEE
Confidence 44666666668899999999999654
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-77 Score=652.50 Aligned_cols=446 Identities=33% Similarity=0.500 Sum_probs=363.9
Q ss_pred E-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 20 I-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 20 v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
| |||||||||+||||||||||+||++||+|||+|||||||||++|+.++|+++|++||+|||++||+ +++|||+|+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde---~~~~QS~r~ 86 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDE---GPYYQSERF 86 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCC---ceeehhhhH
Confidence 7 999999999999999999999999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCC--CCCCCCCChhhhHHHHHHhhC-CcccCCceEEEEEeeccC
Q psy9410 99 DILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGR--NSPFYNRLPSESLNLFRRMRS-GEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 99 ~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~--~~~~r~~~~~~~~~~~~~m~~-g~~~~~~~~~R~k~~~~~ 175 (736)
++|+++|++||++|+||+|+||+|+|+++|..+...|. .+++|+ ++++..+++|.. |. ++++++|+|+++.+
T Consensus 87 ~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~--~~~~viR~k~~~~~ 161 (472)
T COG0008 87 DIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE--GGPAVVRLKIPMAH 161 (472)
T ss_pred HHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc--CCCeEEEEeCCCCC
Confidence 99999999999999999999999999888866555453 255555 677778888887 43 77999999999877
Q ss_pred CCCCCCCcEEEEeccCC-ccc-cCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 176 KNINMRDPIIYRIRHVN-HYR-TNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~-h~~-~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
++..++|+|..|+...+ |+. ++.+|++|||||||+|||||+|||||||||+||.++|++|.||+++||| ..|
T Consensus 162 ~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~------~~P 235 (472)
T COG0008 162 PGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGW------PPP 235 (472)
T ss_pred CCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCC------CCC
Confidence 77789999999998887 999 9999999999999999999999999999999999999999999999999 789
Q ss_pred ceEEEEeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 254 KQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 254 ~~~~f~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
.++||++|.. +|+|||||++...+......||+||+|+|+.+++++|++|+++..|+...|++..+....+..+..+++
T Consensus 236 ~~~H~~li~~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~ 315 (472)
T COG0008 236 VYAHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDR 315 (472)
T ss_pred cEEEeeeeecCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccH
Confidence 8888888765 455999999965555557899999999999999999999999999999999999999899999999999
Q ss_pred cccCCCCCceeEEEeceEEEEecCCCC-ceEEEEcCCCcCCCCccCCCceEeeecc--eeeeecccccccCcccccccCC
Q psy9410 333 DDLDIKAPRIMAVLNPIKLIISNFLDN-QEIECTAPLFSRQHTQYKEKLRYFPISK--ILWIERDDFMEIPTKKYFRLYP 409 (736)
Q Consensus 333 ~~l~~~~~r~~~v~~~~kl~~~n~~~~-~~~~~~~p~~~~~hp~~~~g~r~~~~~~--~i~ie~~D~~~~~~~~~~~l~~ 409 (736)
+.|+..++|+|.+ +|+++.+.++++- ......+|+ +| ++|.|.+.+.+ .++|+..|+.. +..
T Consensus 316 ~kL~~~n~ry~~~-~p~e~~~~~l~~~~~~~~~~~~~----~~--e~~~~~~~l~~~~~~~i~~~~~~~--------~~~ 380 (472)
T COG0008 316 KKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPL----NP--EMGERVVPLTKETLIEIERLDFFF--------FED 380 (472)
T ss_pred HHhHhhhHHHHHh-CCHHHHHHhhhhhhhhhcccCCC----CH--HHHhhhhhhccchHHHHhHHHHHH--------hcc
Confidence 9999999999999 9999999888651 222334443 23 88999999998 88998888764 222
Q ss_pred CCCCCCCcEEEecccEEEEEeee-eecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCC
Q psy9410 410 PIGKNSGNRVRLRYGYVVECTGF-KKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFI 488 (736)
Q Consensus 410 ~~~~~~g~~v~L~~~~~i~~~~~-~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~ 488 (736)
++++++|.+.++....+ ..+..+.... ...+..++|||++.. .++.
T Consensus 381 ------~~~~~~~~l~~~~~~~~l~~~~~~l~~~-----------------~~~~~~i~~wv~~~~----------~~~~ 427 (472)
T COG0008 381 ------KEEVRLKRLANVIVAEVLEKDAEGLITS-----------------DWTKENIIHWVKAVA----------RLFG 427 (472)
T ss_pred ------hHHHHHHhhcchHHHHHHHHHHHhhhhc-----------------cccHHHHHHHHHHHH----------HHhC
Confidence 46788876655432222 2222211110 012234799998533 2333
Q ss_pred CCCCCcccCCccccccCCCceeeE-EEEecccccccCcc--ccccccccccC
Q psy9410 489 DPYPNIVNNKDFKLLINPNSKKVI-SAYLEPNLKLIFPK--KHAQFEQNLLP 537 (736)
Q Consensus 489 ~~~p~~~~~~d~~~~inp~S~~~~-~~~~Ep~l~~~~~~--~~~q~er~g~~ 537 (736)
...| .+++.+...+ .++.+|.+...... ..+|++|.||.
T Consensus 428 vk~~----------~~~~plr~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~~~ 469 (472)
T COG0008 428 VKGP----------KLFPPLRVALTGGYVEPELADTIELLGKEVQFERLGYA 469 (472)
T ss_pred CCCc----------ccchhhHHHhcCCccCCCHHHHHHhhchHHHHHHHHHH
Confidence 3333 2333344444 37888887554433 34888888864
No 14
>KOG1149|consensus
Probab=100.00 E-value=4.2e-71 Score=572.73 Aligned_cols=301 Identities=25% Similarity=0.376 Sum_probs=264.1
Q ss_pred eeeehhccCCCCCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCC
Q psy9410 5 FCFIYDKYGNKLPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFN 83 (736)
Q Consensus 5 ~~~~~~~~~~~~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~ 83 (736)
+-++++++... | |||||||||+||||.+|||++||+|||++||+|||||||||.+|.+.++.++|.++|.|+||.
T Consensus 23 ~~~~r~~~~~~----VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~ 98 (524)
T KOG1149|consen 23 FYCLRRNFAAC----VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLD 98 (524)
T ss_pred HHHhcCCccce----eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCC
Confidence 44566666633 8 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----CccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHH
Q psy9410 84 WDKVK-----KRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRR 154 (736)
Q Consensus 84 ~d~gp-----~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~ 154 (736)
||||| ||||.||+|.++|.++|+.|++.|+||+|||+++++..+|+++. -+.++..|++++.++....
T Consensus 99 ~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~~--- 175 (524)
T KOG1149|consen 99 WDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQK--- 175 (524)
T ss_pred cccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHHH---
Confidence 99999 99999999999999999999999999999999999999987653 2457788999998877543
Q ss_pred hhCCcccCCceEEEEEeeccCC------------C--CCCCCcEEEEeccCCccccCCccccccccccccchhhhccccc
Q psy9410 155 MRSGEFKDGAHVLRVKINMKSK------------N--INMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENIT 220 (736)
Q Consensus 155 m~~g~~~~~~~~~R~k~~~~~~------------~--~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~git 220 (736)
+..|. ++++|+|++-.++ + .+..|||++|+|| +||||||+|||||+||||
T Consensus 176 lakg~----pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDg------------fPTYHfAnVVDDh~M~Is 239 (524)
T KOG1149|consen 176 LAKGT----PFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSDG------------FPTYHFANVVDDHLMGIS 239 (524)
T ss_pred HhcCC----CeeEEEecCCCCCChhhhhhhhhhccccccCCCcEEEecCC------------Ccceeeeeeecchhcchh
Confidence 33333 7899999974221 1 2267999999998 799999999999999999
Q ss_pred eeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEeeec----CCeecchhhhhhhhhccccCCCCCCCcccHHHH
Q psy9410 221 HSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNL----THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 296 (736)
Q Consensus 221 hvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l~~----~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l 296 (736)
|||||.||..+|.++..+|+|+|| .+| +|+||++ +|+|||||++.. .|+.|
T Consensus 240 HViRGeEWlpST~KH~lLYkAfgW------~pP---kFaHlpLl~n~d~sKLSKRqgD~----------------~vs~~ 294 (524)
T KOG1149|consen 240 HVIRGEEWLPSTLKHILLYKAFGW------QPP---KFAHLPLLLNPDGSKLSKRQGDA----------------SVSHY 294 (524)
T ss_pred heeecchhccccHHHHHHHHHhCC------CCC---ceeeeeeeecCCcchhhhhcCcc----------------hHHHH
Confidence 999999999999999999999999 788 8999765 899999999543 68999
Q ss_pred HHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 297 RRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 297 ~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+++||.||||.||++++||+..... +...+++.+. ++|+.+ .++.+++|+.||.+.|
T Consensus 295 ~e~G~LPeallN~ial~Gwg~~~~~-~f~sl~eLieqF~i~~l-tk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 295 REQGYLPEALLNYIALLGWGFRTEN-EFFSLEELIEQFSIERL-TKSNAILDSEKLRFLN 352 (524)
T ss_pred HHcCCChHHHHHHHHHcCCCccccc-ccccHHHHHHHhchhhh-cccccccCHHHHHHHH
Confidence 9999999999999999999986654 5555666554 789987 4889999999998877
No 15
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=4.1e-70 Score=601.50 Aligned_cols=293 Identities=25% Similarity=0.377 Sum_probs=254.5
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Cc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KR 90 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~ 90 (736)
.|+| |||||||||+||||||||||+||++||++||+|||||||||++|++++++++|+++|+||||+||+|| |+
T Consensus 43 ~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~g 122 (535)
T PLN02627 43 GGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYG 122 (535)
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCC
Confidence 4678 99999999999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred cccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceE
Q psy9410 91 IYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHV 166 (736)
Q Consensus 91 ~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~ 166 (736)
+|+||+|+++|+++|++|+++|+||+||||+++++..|+.+. .+.+++.||+++.+++.+.+. .|. +++
T Consensus 123 py~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~---~g~----~~~ 195 (535)
T PLN02627 123 PYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELA---KGT----PYT 195 (535)
T ss_pred CeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHh---CCC----Cce
Confidence 999999999999999999999999999999999998875432 345788999999998765433 232 456
Q ss_pred EEEEee--------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCch
Q psy9410 167 LRVKIN--------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHR 232 (736)
Q Consensus 167 ~R~k~~--------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~ 232 (736)
+|+|++ +..++..++||||+|+|| +||||||++||||+|||||||||+||..++
T Consensus 196 iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG------------~PtY~fA~vVDD~~mgITHViRG~D~l~nT 263 (535)
T PLN02627 196 YRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNG------------QPVYNFCVAVDDATMGITHVIRAEEHLPNT 263 (535)
T ss_pred EEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecCC------------CccccccceecccccCCcEEEechhhhcCh
Confidence 666553 234566889999999998 699999999999999999999999999999
Q ss_pred hHHHHHHhhcccCCcCCCCCCceEEEEeeec----CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHH
Q psy9410 233 PFYEWILNKIDKTNFIKRPFPKQYEFSRLNL----THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 308 (736)
Q Consensus 233 ~~~~~l~~~l~~~~~~~~~~p~~~~f~~l~~----~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~ 308 (736)
++|.+|+++||| ..| .|+|+++ +|+|||||++ .+ ++.+|+++||+|+||+|
T Consensus 264 pkQi~ly~aLg~------~~P---~f~Hlpli~~~~g~KLSKR~~-------~~---------~v~~~r~~G~~PeAi~n 318 (535)
T PLN02627 264 LRQALIYKALGF------PMP---RFAHVSLILAPDRSKLSKRHG-------AT---------SVGQFREMGYLPDAMVN 318 (535)
T ss_pred HHHHHHHHHcCC------CCC---eEEEccceeCCCCCccccccC-------Cc---------cHHHHHHCCCCHHHHHH
Confidence 999999999999 778 7889765 6889999984 33 78999999999999999
Q ss_pred HHHHcCcccCCccccHHHHHHHH-hcccCCCCCceeEEEeceEEEEec
Q psy9410 309 FCKRIGVSKSDSWINIEILEQAL-RDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 309 ~~~~~g~s~~~~~~~~~~l~~~~-~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
|++++||+..+.. ++..+++++ .++++.+. ++.++||+.||.|.|
T Consensus 319 yla~LGws~~~~~-e~~~~~eli~~F~l~~v~-~s~~~fD~~KL~wlN 364 (535)
T PLN02627 319 YLALLGWNDGTEN-EIFTLEELVEKFSIDRIN-KSGAVFDSTKLKWMN 364 (535)
T ss_pred HHHHhCCCCCCCC-CcCCHHHHHHhCCHhhCC-CcccccCHHHHHHHH
Confidence 9999999965422 333444443 47888874 789999999999998
No 16
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=3.3e-69 Score=540.25 Aligned_cols=236 Identities=62% Similarity=1.071 Sum_probs=227.3
Q ss_pred E-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 20 I-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 20 v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
| |||||||||+|||||+|+||+||++||++||+|+|||||||+.|+.++++++|++||+|||++||+ +++||+|+
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~----~~~QS~r~ 77 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK----VTYASDYF 77 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC----ceecccCH
Confidence 5 999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCC
Q psy9410 99 DILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNI 178 (736)
Q Consensus 99 ~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~ 178 (736)
+.|++++++|+++|+||+
T Consensus 78 ~~Y~~~~~~L~~~g~aY~-------------------------------------------------------------- 95 (238)
T cd00807 78 DQLYEYAEQLIKKGKAYV-------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHHHHcCCeec--------------------------------------------------------------
Confidence 999999999999999995
Q ss_pred CCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEE
Q psy9410 179 NMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEF 258 (736)
Q Consensus 179 ~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f 258 (736)
|++.+++|+++||||||++|||++|||||||||+||.+++++|.||+++||| ..|.+++|
T Consensus 96 --------------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~------~~P~~~~~ 155 (238)
T cd00807 96 --------------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRL------YRPHQWEF 155 (238)
T ss_pred --------------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCC------CCCceeEE
Confidence 2223346777899999999999999999999999999999999999999999 78999999
Q ss_pred EeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccCCC
Q psy9410 259 SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIK 338 (736)
Q Consensus 259 ~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~~~ 338 (736)
+||+.+|+|||||++..+|++|.+.||||||++|+.+|+++||+|+||++|+..+|||+++..|++++|+++|++.|++.
T Consensus 156 ~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~ 235 (238)
T cd00807 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPT 235 (238)
T ss_pred EEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q psy9410 339 APR 341 (736)
Q Consensus 339 ~~r 341 (736)
++|
T Consensus 236 ~~r 238 (238)
T cd00807 236 APR 238 (238)
T ss_pred CCC
Confidence 987
No 17
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-68 Score=580.64 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=248.3
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccHHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDI 100 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~ 100 (736)
|||||||||+||||||||||+||++||++||+|||||||||++|+.++++++|+++|+|||++||+ +|+||+|+++
T Consensus 2 ~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe----~y~QSeR~~~ 77 (433)
T PRK12410 2 LRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDK----LVYQSENLKF 77 (433)
T ss_pred CccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCC----CeehhccHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec---
Q psy9410 101 LYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM--- 173 (736)
Q Consensus 101 ~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~--- 173 (736)
|+++|++|+++|+||+||||++++++.|+.+. .+.+++.||+++.++.+ .. ++++++|+|++.
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~~----g~~~~iR~k~p~~~~ 147 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------NC----NKPFVVRLKKPNHTM 147 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------hc----CCCeEEEEEcCCCce
Confidence 99999999999999999999999999886543 34577899999888751 22 347899999863
Q ss_pred ----------cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcc
Q psy9410 174 ----------KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKID 243 (736)
Q Consensus 174 ----------~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~ 243 (736)
...+..++||||+|+|| +||||||++||||+|||||||||+||..++++|.+|+++||
T Consensus 148 ~f~D~v~G~i~~~~~~~~D~Vi~R~Dg------------~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg 215 (433)
T PRK12410 148 SFTDAIKGEVSFEPDEIDSFVILRADK------------TPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALG 215 (433)
T ss_pred eeeeccceeEEeccccCCCeEEEcCCC------------CccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcC
Confidence 33567788999999998 69999999999999999999999999999999999999999
Q ss_pred cCCcCCCCC-CceEEEEeee----cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccC
Q psy9410 244 KTNFIKRPF-PKQYEFSRLN----LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318 (736)
Q Consensus 244 ~~~~~~~~~-p~~~~f~~l~----~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~ 318 (736)
| .. | +|+|++ .+|+|||||++. + +|.+||++||+|+||+||++++||+..
T Consensus 216 ~------~~pp---~f~Hlpli~~~~g~KLSKR~~~-------~---------~v~~~r~~G~~PeAi~n~l~~lG~~~~ 270 (433)
T PRK12410 216 Y------NKEI---TYAHLPIILNEEGKKMSKRDNA-------S---------SVKWLLEQGFLPSAIANYLILLGNKTP 270 (433)
T ss_pred C------CCCC---eEEEeeeeeCCCCCeeecccCh-------h---------hHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 9 54 5 688865 479999999953 2 899999999999999999999999876
Q ss_pred CccccHHHHHHHHhcccCCCCCceeEEEeceEEEEec
Q psy9410 319 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 319 ~~~~~~~~l~~~~~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
...++.+.+. ..++++.+. ++.+++|..||.|.|
T Consensus 271 ~e~~~~~eli--~~F~~~~i~-~~~~~~d~~kL~~~N 304 (433)
T PRK12410 271 KEIFTLEEAI--EWFDIEKIS-KSPAKFDLKKLRFIN 304 (433)
T ss_pred ccccCHHHHH--HhCCHhhCC-CccccCCHHHHHHHH
Confidence 5555555442 347888874 688999999999888
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.4e-67 Score=571.51 Aligned_cols=286 Identities=28% Similarity=0.396 Sum_probs=249.2
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
+| |||||||||+||||||||||+||++||++||+|||||||||++|..+++.+.|+++|+|||++||+ .++||++
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De----~y~QSer 77 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDR----TFRQSDR 77 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCc----cccHHHH
Confidence 47 999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee-
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN- 172 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~- 172 (736)
++.|.+++++|+++|+||+||||+++++..|..+. .+.++..||+++.++..+. ...|. .+++|++++
T Consensus 78 ~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~---~~~g~----~~~iR~k~~~ 150 (445)
T PRK12558 78 FDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAAL---EAEGR----KPHWRFKLDD 150 (445)
T ss_pred HHHHHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhH---HhcCC----CceEEEecCC
Confidence 99999999999999999999999999998886432 2357778999988876543 22222 467777653
Q ss_pred ------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHh
Q psy9410 173 ------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILN 240 (736)
Q Consensus 173 ------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~ 240 (736)
+..++..++||||+|+|| +||||||++||||+|||||||||+||..++++|.||++
T Consensus 151 ~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg------------~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~ 218 (445)
T PRK12558 151 EPISWDDLIRGEQSIDAASLSDPVLIRADG------------SYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFE 218 (445)
T ss_pred CceEEEEEeeeEeecccccCCCeEEEecCC------------CccccccceeccccCCCCEEEechhhhhCCHHHHHHHH
Confidence 233566889999999998 59999999999999999999999999999999999999
Q ss_pred hcccCCcCCCCCCceEEEEeeec----CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcc
Q psy9410 241 KIDKTNFIKRPFPKQYEFSRLNL----THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 316 (736)
Q Consensus 241 ~l~~~~~~~~~~p~~~~f~~l~~----~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s 316 (736)
+||| ..| +|+|+++ +|+|||||++ .+ +|.+||++||+|+||+||++++||+
T Consensus 219 alg~------~~P---~f~H~pli~~~~g~KLSKR~g-------~~---------sv~~~r~~G~~Peai~n~la~lG~s 273 (445)
T PRK12558 219 ALGA------KPP---VFAHLSLLTGADGKGLSKRLG-------GL---------SIRSLREDGIEPMAIASLLARLGTS 273 (445)
T ss_pred HhCC------CCC---eEEEcccccCCCcccccccCC-------Cc---------CHHHHHHCCCCHHHHHHHHHHHcCC
Confidence 9999 678 8999865 6889999984 33 8999999999999999999999999
Q ss_pred cCCccccHHHHHHHH-hcccCCCCCceeEEEeceEEEEec
Q psy9410 317 KSDSWINIEILEQAL-RDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 317 ~~~~~~~~~~l~~~~-~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
..+.. +..+++++ .++++.+. +++++||+.||.|.|
T Consensus 274 ~~~~e--~~~~~eli~~F~l~~~~-~~~~~fd~~KL~w~N 310 (445)
T PRK12558 274 DPVEP--YTSMEELAESFDLSSFS-RAPAKFDPEDLERLN 310 (445)
T ss_pred CCCcc--cCCHHHHHHhCCHhhCC-CccccCCHHHHHHHH
Confidence 87542 23444433 47888875 689999999999998
No 19
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=5.2e-66 Score=519.50 Aligned_cols=237 Identities=36% Similarity=0.619 Sum_probs=225.1
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCccc--ccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLK--ENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r--~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
+| |||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++++.|++||+|||+.||+ +++||
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~----~~~qS 76 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDE----VVIAS 76 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCC----ccchh
Confidence 35 99999999999999999999999999999999999999999999 9999999999999999999998 99999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+|++.|++++++|+++|+||+
T Consensus 77 ~r~~~y~~~~~~Li~~G~aY~----------------------------------------------------------- 97 (240)
T cd09287 77 DRIELYYEYARKLIEMGGAYV----------------------------------------------------------- 97 (240)
T ss_pred ccHHHHHHHHHHHHHcCCccc-----------------------------------------------------------
Confidence 999999999999999999995
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
|++++++|.++||||||++|||++|||||||||+||..++++|.||+++||+ ..|.+
T Consensus 98 -----------------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~------~~P~~ 154 (240)
T cd09287 98 -----------------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGW------EYPET 154 (240)
T ss_pred -----------------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCC------CCCcE
Confidence 2222345666799999999999999999999999999999999999999999 78988
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhccc
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDL 335 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l 335 (736)
.|+..|+.+|+|||||++..+|++|.+.||||||++|+++|+++||+|+||++|+..+||+.++..+++++|+++||++|
T Consensus 155 ~H~pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l 234 (240)
T cd09287 155 IHWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLI 234 (240)
T ss_pred EeeeeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHh
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q psy9410 336 DIKAPR 341 (736)
Q Consensus 336 ~~~~~r 341 (736)
++.|+|
T Consensus 235 ~~~~~r 240 (240)
T cd09287 235 DPRANR 240 (240)
T ss_pred ccCCCC
Confidence 999986
No 20
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-65 Score=571.68 Aligned_cols=291 Identities=29% Similarity=0.403 Sum_probs=255.5
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC----Cccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK----KRIY 92 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp----~~~~ 92 (736)
++| |||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+||||+||+|| |+||
T Consensus 3 ~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy 82 (476)
T PRK01406 3 MKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPY 82 (476)
T ss_pred CceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCce
Confidence 357 99999999999999999999999999999999999999999999999999999999999999999985 7899
Q ss_pred cccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEE
Q psy9410 93 YASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLR 168 (736)
Q Consensus 93 ~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R 168 (736)
+||+|+++|+++|++|+++|+||+||||+|+++..|+.+. .+.+++.||+++.++..+. +..|. ++++|
T Consensus 83 ~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~---~~~g~----~~~iR 155 (476)
T PRK01406 83 RQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAAR---LAAGE----PPVIR 155 (476)
T ss_pred ehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHH---HhCCC----CeeEE
Confidence 9999999999999999999999999999999998876433 2458889999999876543 44443 78999
Q ss_pred EEeec--------------cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhH
Q psy9410 169 VKINM--------------KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 234 (736)
Q Consensus 169 ~k~~~--------------~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~ 234 (736)
+|++. ..++..++|+||+|+|| +|||+||++||||+|||||||||+||..++++
T Consensus 156 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~ 223 (476)
T PRK01406 156 FKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDG------------TPTYNFAVVVDDHLMGITHVIRGEDHLSNTPK 223 (476)
T ss_pred EEcCCCCceEEEEeccceEEeccccCCCcEEEecCC------------CccccchHHHHHHHcCCCEEEECchhhcCHHH
Confidence 98853 24566789999999998 59999999999999999999999999999999
Q ss_pred HHHHHhhcccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHH
Q psy9410 235 YEWILNKIDKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFC 310 (736)
Q Consensus 235 ~~~l~~~l~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~ 310 (736)
|.+++++||| ..| .|.|+ +.+|.|||||++ .+ +|.+|+++||.|+||.||+
T Consensus 224 q~~l~~alG~------~~p---~~~H~pli~~~~g~klSKR~g-------~~---------~l~~l~~~G~~p~Ai~n~l 278 (476)
T PRK01406 224 QILLYEALGW------EVP---VFAHLPLILGPDGKKLSKRHG-------AT---------SVEQYRDMGYLPEALLNYL 278 (476)
T ss_pred HHHHHHHhCC------CCC---eEEEeeeeeCCCCCcccCcCC-------cc---------CHHHHHHCCCCHHHHHHHH
Confidence 9999999998 667 67774 557999999995 23 8999999999999999999
Q ss_pred HHcCcccCCccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 311 KRIGVSKSDSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 311 ~~~g~s~~~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+.+||+..+. +...++++++ ++++.+ +++.++||+.||.|.|
T Consensus 279 ~~lG~s~~~~--e~~~~~~~i~~f~l~~~-~~s~~~fd~~kL~~~N 321 (476)
T PRK01406 279 ALLGWSHGDQ--EIFSLEELIELFDLERV-SKSPARFDIKKLDWLN 321 (476)
T ss_pred HHhCCCCCcc--ccCCHHHHHHhcChhhC-CCCCccccHHHHHHHH
Confidence 9999996533 3445555555 677776 5788999999999988
No 21
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=3.1e-66 Score=550.42 Aligned_cols=307 Identities=32% Similarity=0.445 Sum_probs=241.2
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
+| |||||||||+|||||||+||+||++||++||+|||||||||+.|+.++|+++|+++|+|||++||. ++++||+|
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~---~~~~QS~r 77 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDY---GPYYQSDR 77 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---ST---CEEEGGGG
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCC---eEEeHHHH
Confidence 46 999999999999999999999999999999999999999999999999999999999999999996 69999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHH-HHhhCCcccCCceEEEEEeeccCC
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLF-RRMRSGEFKDGAHVLRVKINMKSK 176 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~-~~m~~g~~~~~~~~~R~k~~~~~~ 176 (736)
+++|+++|++|+++|+||+||||+++|++.|..+. +..++++....+..+.++ ++|.++...++.+++|+|+++...
T Consensus 78 ~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~--~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~ 155 (314)
T PF00749_consen 78 LEIYQEAAEKLIDKGKAYPCFCSREELKAAREAQE--GAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP 155 (314)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHH--HTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC
T ss_pred HHHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhh--ccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc
Confidence 99999999999999999999999999999986532 233456667777777777 677777777889999999998754
Q ss_pred CCCCCCcEEEEeccCC---ccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 177 NINMRDPIIYRIRHVN---HYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 177 ~~~~~D~Vl~R~~~~~---h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
..++|.|..+..... |.....+|.++||||||++||||+|||||||||.||..++++|.||+++||| ..|
T Consensus 156 -~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~------~~P 228 (314)
T PF00749_consen 156 -IAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGW------PPP 228 (314)
T ss_dssp -EEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTS------SS-
T ss_pred -cccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCC------CCc
Confidence 445555555554333 4455555666899999999999999999999999999999999999999999 556
Q ss_pred c-eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 254 K-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 254 ~-~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
. ...+..++.+|+|||||++...| .+..+++.|++|+++.+||.++||+.... -+...+.++.+
T Consensus 229 ~~~H~pl~l~~~g~kLSKR~~~~~i--------------~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~ 293 (314)
T PF00749_consen 229 PYAHLPLILNEDGKKLSKRKGAKSI--------------ELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIK 293 (314)
T ss_dssp EEEEEEEEEETTSSBSSTTCSHHBH--------------HHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHH
T ss_pred ceEeeeeeecCCCcEechhhccccc--------------cccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHH
Confidence 2 11233356689999999977543 37789999999999999999999997544 34555555554
Q ss_pred -cccCCCCCceeEEEeceEEEE
Q psy9410 333 -DDLDIKAPRIMAVLNPIKLII 353 (736)
Q Consensus 333 -~~l~~~~~r~~~v~~~~kl~~ 353 (736)
++++.+ +++.+++|..||.|
T Consensus 294 ~f~~~~~-~~~~~~fd~~kL~w 314 (314)
T PF00749_consen 294 QFDLSKI-SKSPAVFDRKKLDW 314 (314)
T ss_dssp HC-GGGB-HSSHEEHHHHHHHH
T ss_pred HhhHhhc-cCchHHhCHHHhCC
Confidence 668776 47888999887743
No 22
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-65 Score=560.53 Aligned_cols=283 Identities=28% Similarity=0.359 Sum_probs=247.4
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
+| |||||||||+|||||+||||+||++||++||+|||||||||+.|+.++++++|+++|+|||++||+ ++|+||+|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe---~py~QSeR 80 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNG---EVIFQSKR 80 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCC---CceeEeCc
Confidence 57 999999999999999999999999999999999999999999999999999999999999999998 68999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
+++|+++|++|+++|+||+||||++++++.|+.+. .+.+++.||+++.++. . .++++++|+|++.
T Consensus 81 ~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-------~----~~~~~~iR~k~p~ 149 (513)
T PRK14895 81 NNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-------P----TDIKPVIRLKTPR 149 (513)
T ss_pred HHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-------h----cCCCeeEEEEcCC
Confidence 99999999999999999999999999999886543 2457778888776531 1 2347899999974
Q ss_pred c--------------CCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHH
Q psy9410 174 K--------------SKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 239 (736)
Q Consensus 174 ~--------------~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~ 239 (736)
. .++..++|+||+|+||. |||||+++||||+|||||||||.||..++++|.+++
T Consensus 150 ~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~------------ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~ 217 (513)
T PRK14895 150 EGSITIHDTLQGEVVIENSHIDDMVLLRADGT------------ATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIY 217 (513)
T ss_pred CCceEEEeecccceecccccCCCcEEEEeCCC------------cchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHH
Confidence 2 46677899999999985 999999999999999999999999999999999999
Q ss_pred hhcccCCcCCCCCCceEEEEeee----cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 240 NKIDKTNFIKRPFPKQYEFSRLN----LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~f~~l~----~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
++||| ..| .|.|++ .+|.|||||++.. +|.+||++||+|+||+||++++||
T Consensus 218 ~aLG~------~~p---~~~H~plv~~~~g~KLSKR~g~~----------------~i~~~r~~G~~Peai~n~la~LG~ 272 (513)
T PRK14895 218 QAFGY------AVP---SMTHIPLIHGADGAKLSKRHGAL----------------GIEAYKDMGYLPESLCNYLLRLGW 272 (513)
T ss_pred HHcCC------CCC---eEEEEEeEEcCCCCccccccCch----------------hHHHHHHCCCCHHHHHHHHHHhCC
Confidence 99998 667 556643 6799999999542 689999999999999999999999
Q ss_pred ccCCccccHHHHHHHH-hcccCCCCCceeEEEeceEEEEec
Q psy9410 316 SKSDSWINIEILEQAL-RDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 316 s~~~~~~~~~~l~~~~-~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
|..+. +...+++++ .++++.+. ++.++||+.||.|.|
T Consensus 273 s~~~~--e~~~~~el~~~F~~~~v~-~s~~~FD~~KL~wlN 310 (513)
T PRK14895 273 SHGDD--EIISMTQAIDWFNLDSLG-KSPSKLDFAKMNSLN 310 (513)
T ss_pred CCCCc--CCCCHHHHHhhCCHHhCc-CCcCcCCHHHHHHHH
Confidence 96542 333444443 47888874 789999999999998
No 23
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=1.5e-63 Score=555.37 Aligned_cols=288 Identities=28% Similarity=0.390 Sum_probs=250.5
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
+| |||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|+++|+||||+||+ ++|+||+|
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de---~~~~QS~r 77 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDE---GPYYQSQR 77 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCC---CeeehhCC
Confidence 35 999999999999999999999999999999999999999999999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
+++|+++|++|+++|+||+||||+++++..|..+. .+++++.||+++.+++.+.+ .. ++++++|+|++.
T Consensus 78 ~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~---~~----g~~~~iR~k~~~ 150 (470)
T TIGR00464 78 LDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL---AK----GIPPVVRFKIPQ 150 (470)
T ss_pred HHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH---hc----CCCceEEEEcCC
Confidence 99999999999999999999999999998875432 34688999999998776433 22 347899999974
Q ss_pred c--------------CCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHH
Q psy9410 174 K--------------SKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 239 (736)
Q Consensus 174 ~--------------~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~ 239 (736)
. .++..++|+||+|+|| +||||||++||||+|||||||||.||..++++|.+++
T Consensus 151 ~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG------------~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~ 218 (470)
T TIGR00464 151 EAVVSFNDQVRGEITFQNSELDDFVILRSDG------------SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIY 218 (470)
T ss_pred CCceeEEecccceEEecCccCCCeEEEecCC------------CcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHH
Confidence 3 2567789999999998 5999999999999999999999999999999999999
Q ss_pred hhcccCCcCCCCCCceEEEEeee----cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 240 NKIDKTNFIKRPFPKQYEFSRLN----LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~f~~l~----~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
++||| ..| .|.|++ .+|+|||||++ .+ ||.+|+++||.|+|+.+|+..+||
T Consensus 219 ~aLg~------~~p---~~~H~p~l~~~~g~kLSKR~g-------~~---------~l~~l~~~g~~p~a~~~~~~~lG~ 273 (470)
T TIGR00464 219 QALGW------KIP---VFAHLPMILDEDGKKLSKRDG-------AT---------SIMQFKEQGYLPEALINYLALLGW 273 (470)
T ss_pred HHcCC------CCC---eEEEEeeeecCCCccccccCC-------Cc---------cHHHHHHCCCCHHHHHHHHHHcCC
Confidence 99998 567 577754 47899999994 33 899999999999999999999999
Q ss_pred ccCCccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 316 SKSDSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 316 s~~~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+..... +...++++++ ++++.+ ++..++||..||.|.|
T Consensus 274 ~~~~~~-e~~~~~~~i~~f~l~~~-~~~~~~fd~~kL~~~N 312 (470)
T TIGR00464 274 SPPDDQ-EFFSLEELIEIFSLNRV-SKSPAKFDWKKLQWLN 312 (470)
T ss_pred CCCCcc-ccCCHHHHHHhcCcccC-CCCCCeecHHHHHHHH
Confidence 876432 2223334443 677776 4678899999998887
No 24
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=3.9e-63 Score=515.79 Aligned_cols=243 Identities=21% Similarity=0.283 Sum_probs=215.9
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
+| |||||||||+|||||+|+||+||++||++||+|||||||||+.|+.++|+++|++||+||||+||+ ++++||+|
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe---~~~~QS~r 81 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDG---PVLYQSQR 81 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCC---CceEeecc
Confidence 46 999999999999999999999999999999999999999999999999999999999999999998 69999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCC--CCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee---
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNL--HEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN--- 172 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~--~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~--- 172 (736)
+++|++++++|+++|+||+|+||+++|++.+... ....+++.||+++.+++. ++++|+|++
T Consensus 82 ~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~--------------~~~iRlk~~~~~ 147 (299)
T PRK05710 82 HDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRN--------------PPAWRLRVPDAV 147 (299)
T ss_pred HHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccC--------------CceEEEEcCCCc
Confidence 9999999999999999999999999998887211 124578899998876432 578888886
Q ss_pred -----------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhh
Q psy9410 173 -----------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNK 241 (736)
Q Consensus 173 -----------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~ 241 (736)
+.+.+..++||||+|+++ +||||||++||||+|||||||||+||..++++|.||+++
T Consensus 148 ~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg------------~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 215 (299)
T PRK05710 148 IAFDDRLQGRQHQDLALAVGDFVLRRADG------------LFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQL 215 (299)
T ss_pred eEEEEecceeEeeCCCCCCCCEEEEecCC------------CccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHH
Confidence 233455789999999997 699999999999999999999999999999999999999
Q ss_pred cccCCcCCCCCCceEEEEeee----cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCccc
Q psy9410 242 IDKTNFIKRPFPKQYEFSRLN----LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSK 317 (736)
Q Consensus 242 l~~~~~~~~~~p~~~~f~~l~----~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~ 317 (736)
||| ..| +|.|++ .+|+|||||++.. +|.. .|+.|+ |.+|+.++||+.
T Consensus 216 Lg~------~~P---~y~H~pll~~~~g~kLSKr~~~~----------------~i~~---~g~~p~-l~~~l~~lG~~~ 266 (299)
T PRK05710 216 LGL------PTP---RYLHLPLVLNADGQKLSKQNGAP----------------ALDA---AGPLPV-LAAALRFLGQPP 266 (299)
T ss_pred cCC------CCC---eEEEeecccCCCCCcccccCCcc----------------chhh---cCcCHH-HHHHHHHcCCCC
Confidence 999 678 677764 5799999999643 3444 799999 999999999987
Q ss_pred CC
Q psy9410 318 SD 319 (736)
Q Consensus 318 ~~ 319 (736)
..
T Consensus 267 ~~ 268 (299)
T PRK05710 267 PA 268 (299)
T ss_pred Cc
Confidence 53
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=5.1e-62 Score=502.36 Aligned_cols=242 Identities=20% Similarity=0.255 Sum_probs=209.3
Q ss_pred EEEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccHH
Q psy9410 20 ITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD 99 (736)
Q Consensus 20 v~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~ 99 (736)
+|||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|+++|+||||+||+ ++++||+|++
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe---~~~~QS~r~~ 78 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDG---EVVYQSQRHA 78 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC---CeeeeeCCHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999998 6789999999
Q ss_pred HHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeecc-----
Q psy9410 100 ILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMK----- 174 (736)
Q Consensus 100 ~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~----- 174 (736)
+|++++++|+++|+||+||||++++++.+.. ....+++.||+ +.. ...++++++|+|++..
T Consensus 79 ~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~-~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~~~~~~~ 144 (272)
T TIGR03838 79 LYQAALDRLLAAGLAYPCQCTRKEIAAAAGD-GGGIYPGTCRN-GLL------------GRPARPAAWRLRVPDGVIAFD 144 (272)
T ss_pred HHHHHHHHHHHcCCEEecCCCHHHHHHHhcC-CCCCCCchhhc-ccc------------cccCCCceEEEecCCCCceEE
Confidence 9999999999999999999999999988621 22457777887 320 0224467889888631
Q ss_pred --------C-CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccC
Q psy9410 175 --------S-KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT 245 (736)
Q Consensus 175 --------~-~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~ 245 (736)
. .+..+.||||+|+|| +||||||++||||+|||||||||+||..++++|.||+++|||
T Consensus 145 D~~~g~~~~~~~~~~~D~vi~R~Dg------------~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~- 211 (272)
T TIGR03838 145 DRLQGPQQQDLAAAVGDFVLRRADG------------LFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGL- 211 (272)
T ss_pred EeeeeEEEecCcccCCCEEEEecCC------------CccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCC-
Confidence 1 256678999999987 699999999999999999999999999999999999999999
Q ss_pred CcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCC
Q psy9410 246 NFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSD 319 (736)
Q Consensus 246 ~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~ 319 (736)
..| .|.|+ +.+|+|||||++...|+++ -.++++.+++.++||+...
T Consensus 212 -----~~P---~y~H~pll~~~~g~kLSKR~~~~~i~~~--------------------~~~~~~~~~l~~lG~~~~~ 261 (272)
T TIGR03838 212 -----PPP---RYLHLPLVVNADGEKLSKQNGAPALDLS--------------------HPLPALLAALRFLGLPPPP 261 (272)
T ss_pred -----CCC---eEEechhhhCCCCCeeeccCCccchhcC--------------------CcHHHHHHHHHHcCCCCCc
Confidence 778 68885 5689999999977654432 1357899999999998653
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=5.2e-56 Score=445.63 Aligned_cols=218 Identities=41% Similarity=0.690 Sum_probs=195.0
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccHHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDI 100 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~ 100 (736)
|||||||||+|||||+|+|++||++||++||+|+|||||||+.|+.++++++|++||+|||++||+ ++++||+|++.
T Consensus 4 ~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~---~~~~QS~r~~~ 80 (230)
T cd00418 4 TRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDE---GPYRQSDRFDL 80 (230)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCC---CeeehhcCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 69999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCC
Q psy9410 101 LYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINM 180 (736)
Q Consensus 101 ~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~ 180 (736)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred CCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEe
Q psy9410 181 RDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR 260 (736)
Q Consensus 181 ~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~ 260 (736)
++||||||++||||+|||||||||+||..++++|.|++++||+ ..|.+.|+..
T Consensus 93 ---------------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~------~~P~~~H~pl 145 (230)
T cd00418 93 ---------------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGW------EPPRFYHFPR 145 (230)
T ss_pred ---------------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCC------CCCeEEEeee
Confidence 3699999999999999999999999999999999999999999 7896666666
Q ss_pred eec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCc--cccHHHHHHHHhcccCC
Q psy9410 261 LNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDS--WINIEILEQALRDDLDI 337 (736)
Q Consensus 261 l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~--~~~~~~l~~~~~~~l~~ 337 (736)
|.. +|+|||||+++ +||++||++|++|+||++|+..+||+.... .+++.. .+..++++.
T Consensus 146 l~~~~g~KLSKr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~--li~~f~~~~ 207 (230)
T cd00418 146 LLLEDGTKLSKRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEE--MIAAFSVER 207 (230)
T ss_pred eeCCCCCCccCcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHH--HHHhcCHhh
Confidence 643 56999999954 289999999999999999999999987542 233333 233477777
Q ss_pred CCCceeEEEeceEEEEec
Q psy9410 338 KAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 338 ~~~r~~~v~~~~kl~~~n 355 (736)
+. ++.+++|+.||.+.|
T Consensus 208 ~~-~~~~~~d~~kL~~~N 224 (230)
T cd00418 208 VN-SADATFDWAKLEWLN 224 (230)
T ss_pred CC-CCCcccCHHHHHHHH
Confidence 64 788899998887766
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.9e-53 Score=425.83 Aligned_cols=224 Identities=31% Similarity=0.441 Sum_probs=197.2
Q ss_pred E-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Ccccc
Q psy9410 20 I-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRIYY 93 (736)
Q Consensus 20 v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~~~ 93 (736)
| |||||||||+|||||+|+|++||++|+++||+|+|||||||+.|+.++++++|++||+|||++||+|| |++++
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~ 81 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYR 81 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEe
Confidence 5 99999999999999999999999999999999999999999999999999999999999999999954 67999
Q ss_pred ccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec
Q psy9410 94 ASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM 173 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~ 173 (736)
||+|++.|++++++|+++|
T Consensus 82 QS~r~~~y~~~~~~L~~~g------------------------------------------------------------- 100 (239)
T cd00808 82 QSERLEIYRKYAEKLLEKG------------------------------------------------------------- 100 (239)
T ss_pred eeCCHHHHHHHHHHHHHcC-------------------------------------------------------------
Confidence 9999999999999999888
Q ss_pred cCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCC
Q psy9410 174 KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253 (736)
Q Consensus 174 ~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p 253 (736)
+ ++|||+||++|||++|||||||||+||..++++|.|++++||+ ..|
T Consensus 101 ---------------d------------g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~------~~p 147 (239)
T cd00808 101 ---------------D------------GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGW------EPP 147 (239)
T ss_pred ---------------C------------CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCC------CCC
Confidence 2 3799999999999999999999999999999999999999998 678
Q ss_pred ceEEEEee-ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHH-HH
Q psy9410 254 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ-AL 331 (736)
Q Consensus 254 ~~~~f~~l-~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~-~~ 331 (736)
...++..+ +.+|.|||||+++ +||++|+++|+.|+||++|+..+|++..+.. +...+++ +.
T Consensus 148 ~~~h~pll~~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~-~~~~~~~l~~ 210 (239)
T cd00808 148 KFAHLPLILNPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGE-EFFTLEELIE 210 (239)
T ss_pred ceEeeccccCCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCC-CcCCHHHHHh
Confidence 54444443 5578999999965 2899999999999999999999999976642 2233333 33
Q ss_pred hcccCCCCCceeEEEeceEEEEec
Q psy9410 332 RDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 332 ~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
.++++.. +++.+++|+.||.+.|
T Consensus 211 ~f~~~~~-~~~~~~~d~~kL~~~n 233 (239)
T cd00808 211 LFDLERV-SKSPAIFDPEKLDWLN 233 (239)
T ss_pred cCCHhhC-CcCcCcCCHHHHHHHH
Confidence 4778887 4788899998887665
No 28
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=4.6e-34 Score=278.13 Aligned_cols=170 Identities=41% Similarity=0.646 Sum_probs=138.0
Q ss_pred CCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCCCCCc
Q psy9410 339 APRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGN 417 (736)
Q Consensus 339 ~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~~~g~ 417 (736)
|||+|||.||++|.|+|++++..+.+++|+ ||++ ++|+|++.|+++||||++|+. +|++ |+
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~----hPk~~~~G~r~v~~~~~i~Ie~~D~~--------~l~~------g~ 62 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPL----HPKNPELGTREVPFSKTIYIERSDFF--------RLAP------GK 62 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEES----STT-GGG-EEEEEECSEEEEEGGG----------SEET------TC
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecC----CCCCccCceEEEEECceEEEEhhHhh--------hccC------CC
Confidence 689999999999999999988888999999 9999 999999999999999999954 7888 99
Q ss_pred EEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCCCcccC
Q psy9410 418 RVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNN 497 (736)
Q Consensus 418 ~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~~~~~ 497 (736)
+||||++++|+|+++++|.+|+|++++|+|+++++++ . +|++++|||||+++++++++++||+||+.++ +.
T Consensus 63 ~v~L~~~~ni~i~~~~~~~~g~v~~l~~~~~~~~~~~---~--~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~-~~--- 133 (174)
T PF03950_consen 63 EVRLMYWGNIKITSIEKDEDGKVTELKARYDPEDKEG---A--KKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN-DE--- 133 (174)
T ss_dssp EEEETTTEEEEEEEEEE-TTSSEEEEEEEEECTTHHH---H--HHHT-EE-EEEGCC-EEEEEEEE--SBSSS--GG---
T ss_pred EEEEeccceEEEEEeeecCCCCEEEEEEEEecccccC---C--cccCcEEEEccCCCCeeeEEEEehhhcCCCc-cc---
Confidence 9999999999999999999999999999999764422 1 3777899999999999999999999999886 42
Q ss_pred CccccccCCCceee-EEEEecccccccCccccccccccccCc
Q psy9410 498 KDFKLLINPNSKKV-ISAYLEPNLKLIFPKKHAQFEQNLLPQ 538 (736)
Q Consensus 498 ~d~~~~inp~S~~~-~~~~~Ep~l~~~~~~~~~q~er~g~~p 538 (736)
+++ +||+|+.+ ..+++|+++.++++++.+||+|.||+.
T Consensus 134 -~~~--inp~s~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~ 172 (174)
T PF03950_consen 134 -DDL--INPNSLKVVKNGLVEPALKNLKPGDIVQFERRGYFR 172 (174)
T ss_dssp -TGG--B-TTSEEEEEEEEE-GGGGGS-TT-EEEETTTEEEE
T ss_pred -cce--ECCCCcEEccCEEEchhHHhCCCCCEEeEEEeeEEE
Confidence 333 99999999 599999999999999999999999964
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-31 Score=288.37 Aligned_cols=265 Identities=17% Similarity=0.165 Sum_probs=202.4
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|+.||+| +-+.|+++++.||||||++++-+++.| +|..+||.+|+|+|.+.. ...|
T Consensus 13 e~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~ 92 (464)
T COG0215 13 EEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERY 92 (464)
T ss_pred ecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHH
Confidence 67999999999 999999999999999999988777776 333799999999995543 3688
Q ss_pred HHHHHHHHHHcCCCC-CCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCC-Chhh
Q psy9410 70 VNSIIKTIKWLNFNW-DKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNR-LPSE 147 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~-d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~-~~~~ 147 (736)
++++.+|++.||+.+ +. .+++|+|++.|.+++++||++|+||+-. ..+.|.+. +.++
T Consensus 93 i~~f~~D~~aL~v~~p~~----~PraTe~I~~iI~~I~~LiekG~AY~~~-----------------~G~VYFdv~~f~~ 151 (464)
T COG0215 93 IAAFFEDMDALNVLPPDI----EPRATEHIDEIIEFIEKLIEKGYAYVAD-----------------DGDVYFDVSKFKD 151 (464)
T ss_pred HHHHHHHHHHhCCCCCcc----cCcHhhCHHHHHHHHHHHHHCCceEEec-----------------CCcEEEecccchh
Confidence 999999999999965 54 8899999999999999999999999631 11122111 1111
Q ss_pred hHH-----HHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------
Q psy9410 148 SLN-----LFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP---------- 211 (736)
Q Consensus 148 ~~~-----~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~---------- 211 (736)
-.+ ..+.+..| .+++....+.+..||||||+..+.+|.|.||| .|+|.||..|+
T Consensus 152 YG~LS~~~~le~l~~g----------ar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~ 221 (464)
T COG0215 152 YGKLSGRDSLEELQAG----------ARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGET 221 (464)
T ss_pred hHhhcCCCChhHHhhc----------cccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCC
Confidence 100 01223333 23344445778889999999988899999999 78999998885
Q ss_pred hhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce-EEEEeeecCCeecchhhhhhhhhccccCCCCCCCc
Q psy9410 212 ISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRM 290 (736)
Q Consensus 212 vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~-~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~ 290 (736)
+|-|-.|+++++.. |++.+++.......-.| .+. +|.++|+++|+|||||.+|.+
T Consensus 222 ~DIHgGG~DLiFPH--HENEiAQsea~~g~~~~--------a~yWmH~G~l~i~geKMSKSLGNfi-------------- 277 (464)
T COG0215 222 FDIHGGGSDLIFPH--HENEIAQSEAATGVKPF--------AKYWMHNGFLNIDGEKMSKSLGNFI-------------- 277 (464)
T ss_pred cceecCcccccCCC--cccHHHHHHhhhCCCcc--------eeEeEEcceeeecCcCcccccCCee--------------
Confidence 57777888888876 44445666655431111 222 378889999999999999766
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 291 PTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 291 ~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
||++++++ |.|++|| |+++.++++++.+|+.+.|+++.+
T Consensus 278 -ti~d~l~~-~~p~~lR-~~lls~HYR~pl~fsee~L~~A~~ 316 (464)
T COG0215 278 -TVRDLLKK-YDPEVLR-LFLLSSHYRSPLDFSEELLEEAKK 316 (464)
T ss_pred -EHHHHHhh-cCHHHHH-HHHHHHHhCCccccCHHHHHHHHH
Confidence 99999998 9999999 667778888888899998887653
No 30
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=4.5e-31 Score=272.06 Aligned_cols=266 Identities=15% Similarity=0.155 Sum_probs=170.7
Q ss_pred cCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHHHH
Q psy9410 12 YGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEYVN 71 (736)
Q Consensus 12 ~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~~~ 71 (736)
|.|+.||+| +-+.|++++++||||+|++++-+++.| +|...||++|+|+|.+.. ...|++
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 689999999 999999999999999999998777766 577899999999995443 468999
Q ss_pred HHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcccCC-CHHHHHHhhcCCCCCCCCCCCCCCChhhhHH
Q psy9410 72 SIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQ-NTEEIYINRGNLHEPGRNSPFYNRLPSESLN 150 (736)
Q Consensus 72 ~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~-~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~ 150 (736)
.+.+||+.||+.++. ..+++|++++.+.+++++|+++|+||.-.- +- +-... ....|-.++.. +
T Consensus 81 ~f~~dm~~Lnv~~p~---~~prate~i~~ii~~i~~Li~~G~AY~~~~g~V-----YFdv~----~~~~YG~Ls~~-~-- 145 (300)
T PF01406_consen 81 EFFEDMKALNVLPPD---HYPRATEHIPEIIELIEKLIDKGHAYESEDGSV-----YFDVS----KFPDYGKLSNQ-D-- 145 (300)
T ss_dssp HHHHHHHHTT----S---EEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEE-----EE-CC----GSTTTTTTTT--S--
T ss_pred HHHHHHHHcCCCCCc---cccchhccHHHHHHHHHHHHHCCCeEEcCCCcE-----EEeec----ccccccccccc-c--
Confidence 999999999999876 689999999999999999999999996420 00 00000 00012222221 1
Q ss_pred HHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------hhhhcccc
Q psy9410 151 LFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------ISDAIENI 219 (736)
Q Consensus 151 ~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------vdD~~~gi 219 (736)
.++|..|. +++....+.+..||+|||.....++.|.++| .|+|+||+.|+ +|-|..|+
T Consensus 146 -~~~l~~~~----------~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~ 214 (300)
T PF01406_consen 146 -LEDLEAGA----------RVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGI 214 (300)
T ss_dssp -HHHHHHCH----------HHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred -hhhHHhhh----------hcccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEcccc
Confidence 23344332 1222345778899999999887779999999 89999998775 56666677
Q ss_pred ceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHH
Q psy9410 220 THSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRR 298 (736)
Q Consensus 220 thvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~ 298 (736)
++++.. |+...++...... -.| .+.| +.+||+++|+|||||.++.+ ||+++++
T Consensus 215 DL~FPH--HENEiAqs~a~~g-~~~--------a~~W~H~g~l~~~g~KMSKSlgN~~---------------~i~dll~ 268 (300)
T PF01406_consen 215 DLIFPH--HENEIAQSEAATG-KPF--------ANYWMHNGHLNVDGEKMSKSLGNFI---------------TIRDLLK 268 (300)
T ss_dssp GGTTTH--HHHHHHHHHHHHS-S-S--------EEEEEEE--EEETTCE--TTTT------------------BHHHHHT
T ss_pred ccCCCC--ccchHHHHHHhhC-chH--------HHHHHHHHHHhhcCccccccCCCEE---------------EHHHHhh
Confidence 777654 2233344444432 111 2223 78889999999999998876 9999997
Q ss_pred cCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 299 RGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 299 ~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
+ |+|++|| |+.+...++++.+|+++.|+++-
T Consensus 269 ~-~~~~~lR-~~~l~~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 269 K-YSPDALR-LFLLSTHYRKPLNFSEENLEEAK 299 (300)
T ss_dssp T-S-HHHHH-HHHHTS-TTS-EEE-HHHHHHHH
T ss_pred c-CCHHHHH-HHHhcCCCCCccccCHHHHHHhc
Confidence 6 9999999 66777788888889999998763
No 31
>PLN02946 cysteine-tRNA ligase
Probab=99.96 E-value=7e-29 Score=277.98 Aligned_cols=265 Identities=14% Similarity=0.080 Sum_probs=203.2
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|+.||+| +-+.|+|+|++||||+|++|..++++| +|...||.++||+|.+.. ...|
T Consensus 71 e~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y 150 (557)
T PLN02946 71 ELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRY 150 (557)
T ss_pred eccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHH
Confidence 56889999999 999999999999999999999988888 577899999999985443 4688
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCCC
Q psy9410 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNRL 144 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~~ 144 (736)
.+.+.+|++.|||..+. ..+++|+|++.+++++++|+++|+||.- ||... . + .|-.++
T Consensus 151 ~~~f~~d~~~LnI~~p~---~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~----f------~----~YG~Ls 213 (557)
T PLN02946 151 CEEFLSDMAYLHCLPPS---VEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK----F------P----EYGKLS 213 (557)
T ss_pred HHHHHHHHHHCCCCCCC---eecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc----c------h----hhhhcC
Confidence 89999999999998654 6789999999999999999999999942 22110 0 0 011122
Q ss_pred hhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------hh
Q psy9410 145 PSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------IS 213 (736)
Q Consensus 145 ~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------vd 213 (736)
.. + .++|..|. +++....+.+..||+|||.....+|.|.++| .|+|.||..|+ +|
T Consensus 214 ~~-~---l~~l~~g~----------rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~D 279 (557)
T PLN02946 214 GR-K---LEDNRAGE----------RVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFD 279 (557)
T ss_pred CC-C---hhHhhcCC----------CCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCee
Confidence 11 1 23344442 2344446778899999998876679999999 89999998886 78
Q ss_pred hhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccH
Q psy9410 214 DAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTL 293 (736)
Q Consensus 214 D~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl 293 (736)
-|-.|+++++.. |+...++...+...... -..+++++|+++|+|||||+++.+ |+
T Consensus 280 IH~GG~DL~FPH--HENEiAQsea~~g~~~a--------~yW~H~G~v~~~G~KMSKSlGN~i---------------tl 334 (557)
T PLN02946 280 IHGGGMDLVFPH--HENEIAQSCAACCDSNI--------SYWIHNGFVTVDSEKMSKSLGNFF---------------TI 334 (557)
T ss_pred EeccccccCCCc--ccchHHHHHHHhCCCCC--------ceeeEeeEEEeCCCCcCCcCCCcC---------------CH
Confidence 888889999876 34445555544332211 123488999999999999998765 99
Q ss_pred HHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 294 IGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 294 ~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
++++++ |.|+++|.|++. +.++++.+|+++.|.+..+
T Consensus 335 ~dll~~-y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~ 371 (557)
T PLN02946 335 RQVIDL-YHPLALRLFLLG-THYRSPINYSDVQLESASE 371 (557)
T ss_pred HHHHHh-cCccceeeeeec-cCCCCCcEecHHHHHHHHH
Confidence 999987 999999977776 5567777899988877643
No 32
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.4e-27 Score=265.13 Aligned_cols=265 Identities=16% Similarity=0.229 Sum_probs=197.3
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCC----------Ccccc-------
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDT----------NPLKE------- 65 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDt----------d~~r~------- 65 (736)
+.|.|+.||+| +-+.|+|++++||||+|++|..++++| +|...||.+|+|+ |++..
T Consensus 14 e~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g 93 (490)
T PRK14536 14 EEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHG 93 (490)
T ss_pred eccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcC
Confidence 57889999999 999999999999999999999888887 4678999999999 64432
Q ss_pred ------cHHHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCC
Q psy9410 66 ------NKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEP 134 (736)
Q Consensus 66 ------~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~ 134 (736)
...|.+.+.++++.|||.++. ..+++|+|++.+++++++|+++|+||.- ||... .+
T Consensus 94 ~~~~e~a~~~~~~f~~d~~~Lni~~~~---~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----------~~ 160 (490)
T PRK14536 94 KSVLEIAAHYTAAFFRDTARLNIERPS---IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----------FP 160 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCc---eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----------cc
Confidence 368889999999999999876 5678999999999999999999999942 32210 00
Q ss_pred CCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEecc--C-CccccCCcc-cccccccccc
Q psy9410 135 GRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRH--V-NHYRTNNNW-CIYPMYDYAH 210 (736)
Q Consensus 135 g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~--~-~h~~~~~~w-~i~PtY~fa~ 210 (736)
.|-.++.. + .++|..|. +++....+.+..||+|||... . .++.|.++| .++|.||..|
T Consensus 161 ----~YG~Ls~~-~---~~~l~~g~----------~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIEC 222 (490)
T PRK14536 161 ----SYGSLASA-A---VEDLQAGA----------RIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIEC 222 (490)
T ss_pred ----chhhhcCC-C---HHHhhcCC----------cCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHH
Confidence 12222211 1 12344332 233334577889999998753 2 257899999 6899999988
Q ss_pred c----------hhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhc
Q psy9410 211 P----------ISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEK 279 (736)
Q Consensus 211 ~----------vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~ 279 (736)
+ +|-|..|+.+++... +...++-..+ .|. ..++.| +.++|.++|+|||||+++.+
T Consensus 223 saMs~~~lg~~~DIH~GG~DliFPHH--eneiAqs~a~---~g~------~~~~~w~h~g~l~~~g~KMSKSlGN~i--- 288 (490)
T PRK14536 223 SAMSMKYLGEQCDIHIGGVDHIRVHH--TNEIAQCEAA---TGK------PWVRYWLHHEFLLMNKGKMSKSAGQFL--- 288 (490)
T ss_pred HHHHHHHcCCceeEEeccccCCCcch--hhHHHHHHHh---cCC------CcceEEEEcCEEeecCccccccCCCcc---
Confidence 6 466777777777642 2222232222 232 223333 77889999999999998765
Q ss_pred cccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 280 KIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 280 ~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|+++|+++||.|+++|.|++. ..++++.+|+++.|.+..+
T Consensus 289 ------------tl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~ 328 (490)
T PRK14536 289 ------------TLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKA 328 (490)
T ss_pred ------------cHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHH
Confidence 999999999999999966555 7777888899999988765
No 33
>PRK06991 ferredoxin; Provisional
Probab=99.95 E-value=2.9e-27 Score=243.84 Aligned_cols=197 Identities=53% Similarity=0.997 Sum_probs=161.2
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
-+|.++|+.|||++|+.||++|++|...++.||.++.+++..++.++|.+..++....+.......+.+|.+.|++||.|
T Consensus 14 ~LP~~nCg~CGy~gC~~yAeAIa~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~~~~~~~~~~~~id~~~CigCg~C 93 (270)
T PRK06991 14 LLPQTQCTKCGYDGCRPYAEAIAAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPANGVERPRAVAVIDEQLCIGCTLC 93 (270)
T ss_pred hCCCCCCccCCCCChHHHHHHHHcCCCCCCcCCCCcHHHHHHHHHHhCCCccccccccccccccceeEEccccCCCCcHH
Confidence 47899999999999999999999999999999999999999999999998766543333334446678999999999999
Q ss_pred HhhCcccccccccccceeecccCccCccchhhcCccCceeecccCCcccccccccccchHHHHHHHHHHhhhhhhhHHHH
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEKKEN 694 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~~k~~~ 694 (736)
+.+||+++|.+.......++...|++||.|+.+||++||.+.+.......|..|...+.+.++.++..|..|+.+++.+.
T Consensus 94 v~aCP~~AI~~~~~~~~~v~~~~CigCg~Cv~vCP~~AI~~~~~~~~~~~~~~~~~~~a~~ar~r~~~r~~Rl~~~~~~~ 173 (270)
T PRK06991 94 MQACPVDAIVGAPKQMHTVLADLCTGCDLCVPPCPVDCIDMVPVTGERTGWDAWSQAQADAARARHDARQARLRREREAA 173 (270)
T ss_pred HHhCCHhheecccccceeeCHhhCCCchHHHhhCCcCCeEeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987655555677889999999999999999999887766677888888889999999999999999998777
Q ss_pred HHHHHhhhhhh--h-------------hcChhHHHHHHHHHHHHHHHhhchh
Q psy9410 695 YAKLKKATIQF--K-------------KNNRETQKSLIEMAVKRIKELKNKE 731 (736)
Q Consensus 695 ~~~~~~~~~~~--~-------------~~~~~~~~~~~a~a~~~~~~~~~~~ 731 (736)
.+++.+..+.. . ..+.+.+++++++|++++++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~a~i~aa~~ra~~~~~~~ 225 (270)
T PRK06991 174 EARAAARAAASAAAAAAEASAAAAPAADDAEAKKRAIIAAALERARKKKEEL 225 (270)
T ss_pred HHHHHHHHHHhhcccccccccccccccchhhhHHHHHHHHHHHHHHHhhhcc
Confidence 66655432211 0 1112346789999999999876544
No 34
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.95 E-value=2.5e-27 Score=265.42 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=197.9
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|+.||+| +-+.|+|+|++||||+|+++..+.++| +|++.|+.++||+|.+.. ...|
T Consensus 12 e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~ 91 (465)
T TIGR00435 12 EEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERF 91 (465)
T ss_pred eccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHH
Confidence 56789999998 999999999999999999999999999 788999999999986443 3688
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhH
Q psy9410 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESL 149 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~ 149 (736)
.+.|.+++++|||.+|. ..+.+|+|++.+++++++|+++|+||.+.. ..-.-... .-..|-.++. .+
T Consensus 92 ~~~f~~dl~~LgI~~d~---~~~raT~hi~~i~~~i~~L~ekG~aY~~~~-g~vyfdv~-------~~~~yG~ls~-~~- 158 (465)
T TIGR00435 92 IEAYFEDMKALNVLPPD---LEPRATEHIDEIIEFIEQLIEKGYAYVSDN-GDVYFDVS-------KFKDYGKLSK-QD- 158 (465)
T ss_pred HHHHHHHHHHhCCCCCc---CCccccccHHHHHHHHHHHHHCCCEEEecC-CcEEEecc-------ccchhccCCC-CC-
Confidence 89999999999999886 456899999999999999999999996420 00000000 0001222221 11
Q ss_pred HHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------hhhhccc
Q psy9410 150 NLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------ISDAIEN 218 (736)
Q Consensus 150 ~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------vdD~~~g 218 (736)
.+.|..|. +++....+.+..||+|||.....++.|.++| .++|.||+.|+ +|-|..|
T Consensus 159 --~~~~~~~~----------~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG 226 (465)
T TIGR00435 159 --LDQLEAGA----------RVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGG 226 (465)
T ss_pred --HHHHhccc----------ccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccc
Confidence 12343332 2333334677899999998877789999999 58999999886 5556666
Q ss_pred cceeeccccccCchhHHHHHHhhcccCCcCCCCCCce-EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHH
Q psy9410 219 ITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMR 297 (736)
Q Consensus 219 ithvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~-~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~ 297 (736)
+.|++.+.| ....+...+ .|. ..+.. ++++++.++|.|||||+++.+ |+++++
T Consensus 227 ~Dl~fpHhe--ne~aqs~a~---~g~------~~~~~~~h~g~v~~~g~KMSKS~GN~i---------------~~~dll 280 (465)
T TIGR00435 227 VDLIFPHHE--NEIAQSEAA---FGK------QLAKYWMHNGFLMIDNEKMSKSLGNFF---------------TVRDVL 280 (465)
T ss_pred cccccchHH--HHHHHHHHh---cCC------CCCcEEEEeeEEEecCccccccCCCcC---------------CHHHHH
Confidence 666654421 122222222 232 22333 478889999999999998755 899999
Q ss_pred HcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 298 RRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 298 ~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+. |.|+++|.|++.. ..+++..|+++.|++..+
T Consensus 281 ~~-~~~dalR~~ll~~-~~~~~l~fs~~~l~~a~~ 313 (465)
T TIGR00435 281 KN-YDPEILRYFLLSV-HYRSPLDFSEELLEAAKN 313 (465)
T ss_pred HH-CCHHHHHHHHHhC-CCCCCCccCHHHHHHHHH
Confidence 87 9999999888764 566777899998888765
No 35
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.1e-27 Score=258.84 Aligned_cols=268 Identities=13% Similarity=0.043 Sum_probs=194.8
Q ss_pred CCCCCC-cE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHHHH
Q psy9410 13 GNKLPQ-VI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEYVN 71 (736)
Q Consensus 13 ~~~~~~-~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~~~ 71 (736)
.|++|| +| +-+.|+|+|++||||+|++|..++++| .|...|+..+||.|.+.. ...|.+
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 588999 77 999999999999999999999988887 366899999999984443 468889
Q ss_pred HHHHHHHHcCC-CCCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhH-
Q psy9410 72 SIIKTIKWLNF-NWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESL- 149 (736)
Q Consensus 72 ~i~~dl~wLGi-~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~- 149 (736)
.+.++++.||| .++. .+++|++++.+++++++|+++|+||.-.- .++++.|.+.+.-...
T Consensus 82 ~f~~d~~~Lni~~~~~----~~raTe~i~~~~~~i~~L~~kG~aY~~~~--------------~~~~~VYFdv~~~~~YG 143 (384)
T PRK12418 82 LFREDMEALRVLPPRD----YVGAVESIPEVVELVEKLLASGAAYVVDD--------------EEYPDVYFSVDATPQFG 143 (384)
T ss_pred HHHHHHHHhCCCCCCc----cccCCCCHHHHHHHHHHHHHCCCEEEeCC--------------CCCccEEEecCchhhcc
Confidence 99999999997 5665 88999999999999999999999995211 0011223222211100
Q ss_pred ----HHHHHhhCCcccCCceEEEEE-eec-cCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------h
Q psy9410 150 ----NLFRRMRSGEFKDGAHVLRVK-INM-KSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------I 212 (736)
Q Consensus 150 ----~~~~~m~~g~~~~~~~~~R~k-~~~-~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------v 212 (736)
...++|..|. ..+ ++. ...+.+..||+|||.....+|.|.++| .++|.||..|+ +
T Consensus 144 ~ls~~~~~~~~~~~--------~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~ 215 (384)
T PRK12418 144 YESGYDRATMLELF--------AERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGF 215 (384)
T ss_pred cccCCCHHHHHhhh--------cccccCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCc
Confidence 0012222210 011 112 224678899999998876789999999 89999998885 6
Q ss_pred hhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcc
Q psy9410 213 SDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMP 291 (736)
Q Consensus 213 dD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~ 291 (736)
|-|..|+++++.. |+...++...+.....| ++.| +-++|.++|+|||||++|.+
T Consensus 216 DIH~GG~DL~FPH--Heneiaq~~a~~g~~~~--------~~~w~H~g~l~~~G~KMSKSlGN~i--------------- 270 (384)
T PRK12418 216 DIQGGGSDLIFPH--HEFSAAHAEAATGERRF--------ARHYVHAGMIGLDGEKMSKSRGNLV--------------- 270 (384)
T ss_pred ccccCccccccch--hHhHHHHHHHhcCCCCc--------ceEEEECCEECCCCCcccCcCCCcC---------------
Confidence 7778888888765 22333444433221111 2222 66778999999999998755
Q ss_pred cHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 292 TLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 292 tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|+.++.+.|+.|+++|.|++ .+..+++.+|+++.|.+..+
T Consensus 271 ~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~ 310 (384)
T PRK12418 271 FVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAEAEA 310 (384)
T ss_pred CHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHHHHH
Confidence 89999989999999997775 77777788899998887654
No 36
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=4.1e-27 Score=264.59 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=201.5
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|+.||+| +-+.|+|++++||||+|++++.++++| +|...|+.+++|+|.+.. ...|
T Consensus 239 e~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y 318 (699)
T PRK14535 239 EPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARF 318 (699)
T ss_pred eccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHH
Confidence 46789999999 999999999999999999999998888 467899999999985443 3688
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCccc------CCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD------SQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c------~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
.+.+.+|++.|||.++. ..+.+|+|++.+.+++++|+++|+||.- ||... . + .|-.+
T Consensus 319 ~~~F~~d~~~LnI~~p~---~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~----f------~----~YG~L 381 (699)
T PRK14535 319 IQAMHEDADALGVLRPD---IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE----F------A----AYGQL 381 (699)
T ss_pred HHHHHHHHHHcCCCCCc---EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc----c------c----ccccc
Confidence 89999999999999887 5788999999999999999999999942 22110 0 0 11122
Q ss_pred ChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------h
Q psy9410 144 LPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------I 212 (736)
Q Consensus 144 ~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------v 212 (736)
+.. + .++|..|. +++....+.+..||+|||.....+|.|.++| .|+|.||..|+ +
T Consensus 382 S~~-~---~~~l~~g~----------rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~ 447 (699)
T PRK14535 382 SGK-S---LDDLRAGE----------RVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTF 447 (699)
T ss_pred cCC-C---hHHhcCCC----------ccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcc
Confidence 211 1 23344442 2333335778899999998877789999999 78999998775 6
Q ss_pred hhhccccceeeccccccCchhHHHHHHhhc-ccCC--cCCCCCC-----ceEEEEeeecCCeecchhhhhhhhhccccCC
Q psy9410 213 SDAIENITHSICTLEFQDHRPFYEWILNKI-DKTN--FIKRPFP-----KQYEFSRLNLTHTITSKRKLLKLLEKKIVDG 284 (736)
Q Consensus 213 dD~~~githvirg~e~~~~~~~~~~l~~~l-~~~~--~~~~~~p-----~~~~f~~l~~~g~klSKr~~~~~v~~~~~~g 284 (736)
|-|..|+.+++.. |+...++...+...- +... ......| ..+|.+++.++|+|||||.++.+
T Consensus 448 DIHgGG~DLiFPH--HENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~i-------- 517 (699)
T PRK14535 448 DIHGGGADLQFPH--HENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFF-------- 517 (699)
T ss_pred eeECCccccCCCC--CccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcC--------
Confidence 7888899999876 344455555443220 0000 0000001 23367888999999999998755
Q ss_pred CCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 285 WDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 285 wddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+++++++ |.|+++|.|++. +.++++..|+.+.|++..
T Consensus 518 -------t~~dlLe~-ygpdalRl~lLs-shYRspL~fS~e~Le~Ak 555 (699)
T PRK14535 518 -------TIREVLKQ-YDPEVVRFFILR-AHYRSPLNYSDAHLDDAK 555 (699)
T ss_pred -------CHHHHHHh-CCHHHHHHHHHc-CCCCCCCCcCHHHHHHHH
Confidence 89999986 999999977776 667788889988888764
No 37
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=6.1e-27 Score=258.64 Aligned_cols=261 Identities=15% Similarity=0.214 Sum_probs=192.5
Q ss_pred ccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCC----------Ccccc--------
Q psy9410 11 KYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDT----------NPLKE-------- 65 (736)
Q Consensus 11 ~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDt----------d~~r~-------- 65 (736)
.|.|+ ++| +-+.|+|++++||||+|++++.++++| +|...||++|+|+ |++..
T Consensus 15 ~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~ 92 (481)
T PRK14534 15 ELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGL 92 (481)
T ss_pred ecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCC
Confidence 34454 577 889999999999999999999888887 4678999999999 64332
Q ss_pred -----cHHHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCC
Q psy9410 66 -----NKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPG 135 (736)
Q Consensus 66 -----~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g 135 (736)
...|.+.+.++++.|||.++. ..+.+|+|++.+++++++|+++|+||.- |+... .
T Consensus 93 ~~~e~a~~~~~~f~~d~~~Lni~~~~---~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~-------- 157 (481)
T PRK14534 93 TVYEISRFFTEAFFDDCKKLNIVYPD---KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F-------- 157 (481)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCc---eecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--------
Confidence 468889999999999999887 5667999999999999999999999942 22221 0
Q ss_pred CCCCCCCCChhhhHHHHHHhh--CCcccCCceEEEEEeeccCCCCCCCCcEEEEec---cCCccccCCcc-ccccccccc
Q psy9410 136 RNSPFYNRLPSESLNLFRRMR--SGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR---HVNHYRTNNNW-CIYPMYDYA 209 (736)
Q Consensus 136 ~~~~~r~~~~~~~~~~~~~m~--~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~---~~~h~~~~~~w-~i~PtY~fa 209 (736)
+.|-.++.. + .++|. .| .+++....+.+..||+|||.. ...++.|.++| .|+|+||..
T Consensus 158 --~~YG~ls~~-~---l~~l~~~~~----------~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiE 221 (481)
T PRK14534 158 --KSYGQMAGI-N---LNDFKDMSV----------SRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLE 221 (481)
T ss_pred --cchhhhcCC-C---HHHHhhhcc----------CcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHH
Confidence 011112211 1 12222 22 123344457788999999964 34578899999 789999988
Q ss_pred cc----------hhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhh
Q psy9410 210 HP----------ISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLE 278 (736)
Q Consensus 210 ~~----------vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~ 278 (736)
|+ +|-|..|+.+++...| ...++-... .|. ..++.| +.++|.++|.|||||.++.+
T Consensus 222 Csam~~~~lg~~~DIH~GG~DliFPHHe--ne~Aqs~a~---~g~------~~~~~W~H~g~l~~~g~KMSKSlGN~i-- 288 (481)
T PRK14534 222 CAAMNLEYFKSTLDIHLGGVDHIGVHHI--NEIAIAECY---LNK------KWCDMFVHGEFLIMEYEKMSKSNNNFI-- 288 (481)
T ss_pred HHHHHHHHcCCcceEEecccccCCCcch--hHHHHHhhh---cCC------CcceEEEEecEEEecCceecccCCCcc--
Confidence 86 6777888888876422 222222222 232 224444 77889999999999998765
Q ss_pred ccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 279 KKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 279 ~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+++|+++||.|+++|.| .+...++++.+|+++.|+++.
T Consensus 289 -------------~l~dll~~~~~~~alR~~-lls~~yr~~l~Fs~e~l~~a~ 327 (481)
T PRK14534 289 -------------TIKDLEDQGFSPLDFRYF-CLTAHYRTQLKFTFNNLKACK 327 (481)
T ss_pred -------------cHHHHHhcCCChhHHHHH-HHhCCCCCCCCCCHHHHHHHH
Confidence 999999999999999954 667777888889999998875
No 38
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.94 E-value=3.4e-26 Score=256.90 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=191.9
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|..|++| +-++|+|+|++||||+|++++.++++|. |+..|+..++|+|.... ...+
T Consensus 14 ~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~ 93 (463)
T PRK00260 14 EEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERY 93 (463)
T ss_pred eecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHH
Confidence 45778888988 6699999999999999999999999986 88999999999985442 4688
Q ss_pred HHHHHHHHHHcCCC-CCCCCCccccccccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 70 VNSIIKTIKWLNFN-WDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 70 ~~~i~~dl~wLGi~-~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
++.+.+++++|||. +|. .+++|+|++.+++++++|+++|+||.. ||.... + .|-.+
T Consensus 94 ~~~f~~~~~~Lgi~~~d~----~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~----------~----~yg~l 155 (463)
T PRK00260 94 IAAFHEDMDALNVLPPDI----EPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKF----------P----DYGKL 155 (463)
T ss_pred HHHHHHHHHHcCCCCCCc----cccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccc----------c----ccccC
Confidence 99999999999994 554 678899999999999999999999953 332210 0 12222
Q ss_pred ChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-cccccccccc-c---------h
Q psy9410 144 LPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAH-P---------I 212 (736)
Q Consensus 144 ~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~-~---------v 212 (736)
+.. + .++|..|. +++....+.+..||+|||.....++.|.++| .+.|+||..| + +
T Consensus 156 s~~-~---~~~~~~~~----------~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~ 221 (463)
T PRK00260 156 SGR-N---LDELQAGA----------RVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETF 221 (463)
T ss_pred CCC-C---HHHHhccC----------cCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCc
Confidence 221 1 12344331 2333445778899999998877789999999 5799999988 3 4
Q ss_pred hhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce-EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcc
Q psy9410 213 SDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMP 291 (736)
Q Consensus 213 dD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~-~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~ 291 (736)
|-|..|+.|++... .....+...+ .|. ..+.. ++.+++.++|+|||||+++.+
T Consensus 222 Dih~gG~DlifpHh--~neiaqs~a~---~g~------p~~~~w~H~g~v~~~G~KMSKS~GN~i--------------- 275 (463)
T PRK00260 222 DIHGGGADLIFPHH--ENEIAQSEAA---TGK------PFANYWMHNGFVTVNGEKMSKSLGNFF--------------- 275 (463)
T ss_pred ceecCccccCCCch--HhHHHHHHHh---cCC------CcceEEEEccEEccCCCcccCcCCCCC---------------
Confidence 44455555554321 1112222232 221 12333 367888999999999998755
Q ss_pred cHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 292 TLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 292 tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
|+.++.+. |.|++||.|++. +..+++..|+++.|....+.
T Consensus 276 ~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~ 315 (463)
T PRK00260 276 TIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKA 315 (463)
T ss_pred CHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHHHHHHHHHH
Confidence 89999986 999999987775 56677888888888776553
No 39
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=5.3e-27 Score=254.39 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=190.9
Q ss_pred ccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCcccc-------------cHHHH
Q psy9410 11 KYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLKE-------------NKEYV 70 (736)
Q Consensus 11 ~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r~-------------~~~~~ 70 (736)
.|.| |++| +-+.|+|++++||||+|+++..++++| +|...||.++||.|.+.. ...|.
T Consensus 30 ~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~ 107 (411)
T TIGR03447 30 PVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQI 107 (411)
T ss_pred eccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHH
Confidence 3555 6777 999999999999999999999999888 477899999999984433 46888
Q ss_pred HHHHHHHHHcCCC-CCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhH
Q psy9410 71 NSIIKTIKWLNFN-WDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESL 149 (736)
Q Consensus 71 ~~i~~dl~wLGi~-~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~ 149 (736)
+.+.++++.||+. ++. .+++|++++.+.+++++|+++|+||.-.- . ...+.|.+.+.-...
T Consensus 108 ~~f~~d~~~Lni~~~d~----~~RaTe~i~~ii~~i~~L~~kG~aY~~~~-~-------------~~~~VYFdv~~~~~Y 169 (411)
T TIGR03447 108 DLFREDMEALRVLPPRD----YIGAVESIDEVIEMVEKLLAAGAAYEVEG-P-------------EYPDVYFSIEATEQF 169 (411)
T ss_pred HHHHHHHHHcCCCCCCc----ccCCCCCHHHHHHHHHHHHHCCCEEecCC-C-------------CcCcEEEeccchhcc
Confidence 9999999999987 554 88999999999999999999999995210 0 001222222111000
Q ss_pred -----HHHHHhhCCcccCCceEEEEE-eec-cCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------
Q psy9410 150 -----NLFRRMRSGEFKDGAHVLRVK-INM-KSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP---------- 211 (736)
Q Consensus 150 -----~~~~~m~~g~~~~~~~~~R~k-~~~-~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~---------- 211 (736)
...++|..+. ..+ ++. ...+.+..||+|||.....++.|.++| .++|.||..|+
T Consensus 170 G~Ls~~~~~~~~~~~--------~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~ 241 (411)
T TIGR03447 170 GYESGYDRATMLELF--------AERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAG 241 (411)
T ss_pred ccccCCCHHHHHhhh--------cccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCc
Confidence 0012222210 011 222 124677899999998877789999999 89999998885
Q ss_pred hhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCc
Q psy9410 212 ISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRM 290 (736)
Q Consensus 212 vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~ 290 (736)
+|-|..|+++++... +...++...+...-.| ++.| +.++|.++|+|||||++|.+
T Consensus 242 ~Dih~GG~DLifpHh--eneiaq~~A~~g~~~~--------~~~w~H~g~l~~~G~KMSKSlGN~i-------------- 297 (411)
T TIGR03447 242 FDIQGGGSDLIFPHH--EFSAAHAEAATGVRRM--------ARHYVHAGMIGLDGEKMSKSLGNLV-------------- 297 (411)
T ss_pred eecccCcccccccch--HhHHHHHHHhcCCCCc--------ceEEEECCEECcCCCCccCcCCCCC--------------
Confidence 455666666666542 2223344433221111 3333 67789999999999998765
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 291 PTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 291 ~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|++++.+.|+.|+++|.|++ ...++++.+|+.+.|++..
T Consensus 298 -~~~dl~~~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~a~ 336 (411)
T TIGR03447 298 -FVSKLRAAGVDPAAIRLGLL-AGHYRQDRDWTDAVLAEAE 336 (411)
T ss_pred -CHHHHHhcCCCcccEEEEEe-cCCCCCCCccCHHHHHHHH
Confidence 89999999999999997775 7777778889988887754
No 40
>KOG2007|consensus
Probab=99.93 E-value=1.6e-26 Score=245.31 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=192.9
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH------hcCCEEEEEeeCCCccccc---------------
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY------KYNGLCNLRFDDTNPLKEN--------------- 66 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilR~eDtd~~r~~--------------- 66 (736)
+.|.|..|++| +-+.|++++..||||||+++--+++.| +|+..|+++|+|+|.+...
T Consensus 46 e~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~ 125 (586)
T KOG2007|consen 46 EVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLS 125 (586)
T ss_pred ceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHH
Confidence 67899999999 888999999999999999987777776 5889999999999955442
Q ss_pred ---HHHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 67 ---KEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 67 ---~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
..|++.+..||..|++.++. ..++.|+|++.+..+++++|++|.||.- ..+.|.+.
T Consensus 126 ~~F~~~e~eF~~DM~~LnvLpPt---v~tRVSeyvp~II~fIqkIIdnG~aY~~------------------dGsVYFdv 184 (586)
T KOG2007|consen 126 ERFCYYEEEFLQDMAALNVLPPT---VQTRVSEYVPQIIKFIQKIIDNGYAYAV------------------DGSVYFDV 184 (586)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCc---ccchhhhchHHHHHHHHHHHhCCceeee------------------CCcEEEec
Confidence 13679999999999998877 6899999999999999999999999963 23334443
Q ss_pred Chhh-hHHHH----HHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc------
Q psy9410 144 LPSE-SLNLF----RRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP------ 211 (736)
Q Consensus 144 ~~~~-~~~~~----~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~------ 211 (736)
..-+ +...+ +.+.+| +|..+ .+.+.+..||+|||..++.+|.|.+|| .+.|.||..|+
T Consensus 185 ~kf~~~YgKL~G~~~~~~~g---Eg~l~-------ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~ 254 (586)
T KOG2007|consen 185 DKFPHSYGKLVGQRKNLQEG---EGVLS-------DSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAI 254 (586)
T ss_pred ccccchhhhhcCchhhcccC---cCccc-------cccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHh
Confidence 3222 11111 122222 22222 245667779999999999999999999 89999999886
Q ss_pred ----hhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEeeecCCeecchhhhhhhhhccccCCCCC
Q psy9410 212 ----ISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDD 287 (736)
Q Consensus 212 ----vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwdd 287 (736)
+|-|-.||+..+.. |++..++-.+.++.-.|. -..+|-|||.++|.||||+..|++
T Consensus 255 lG~~lDIH~GG~DL~FPH--HeNEiAQ~eA~~~~~~wV-------nYflHtGhL~i~g~KMSKSLkNFi----------- 314 (586)
T KOG2007|consen 255 LGSQLDIHGGGIDLAFPH--HENEIAQSEAAFDDSQWV-------NYFLHTGHLTINGEKMSKSLKNFI----------- 314 (586)
T ss_pred hccccceecCcccccCCC--cccHHHHHHHHhcCCccc-------eeEEEcCeeeeccchhhhhhccce-----------
Confidence 46666777776654 333344444444433330 123378999999999999998765
Q ss_pred CCcccHHHHHHcCCCHHHHHHHHHHcCcccCC
Q psy9410 288 PRMPTLIGMRRRGYTPESIKLFCKRIGVSKSD 319 (736)
Q Consensus 288 pr~~tl~~l~~~G~~peai~~~~~~~g~s~~~ 319 (736)
||+++++. |+|.++|-||++..|..+-
T Consensus 315 ----TIke~Lk~-~sp~qLRl~fl~~~wr~~l 341 (586)
T KOG2007|consen 315 ----TIKEALKK-YSPRQLRLAFLLHQWRSPL 341 (586)
T ss_pred ----eHHHHHHh-cCHHHHHHHHHHHHhcCcC
Confidence 99999987 9999999999998887543
No 41
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.93 E-value=1.5e-25 Score=258.76 Aligned_cols=277 Identities=15% Similarity=0.154 Sum_probs=198.3
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH------hcCCEEEEEeeCCCcccc--------------cH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY------KYNGLCNLRFDDTNPLKE--------------NK 67 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar------~~~G~~ilR~eDtd~~r~--------------~~ 67 (736)
+.|.|+.|++| +-+.|+++++.||||||++|+.++++| +|...|+++|+|+|.+.. ..
T Consensus 51 ~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~ 130 (651)
T PTZ00399 51 VEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELAR 130 (651)
T ss_pred cccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHH
Confidence 56889999999 889999999999999999999888776 356799999999985432 35
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHH-HHHHhhcCCCCCCCCCCCCCCChh
Q psy9410 68 EYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTE-EIYINRGNLHEPGRNSPFYNRLPS 146 (736)
Q Consensus 68 ~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e-~l~~~r~~~~~~g~~~~~r~~~~~ 146 (736)
.|++.+.+|++.|||.++. ..+++|+|++.+.+++++|+++|+||.-.-+-= ++...... +. .|-.++++
T Consensus 131 ~~~~~f~~d~~~Lni~~p~---~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~----~~--~Yg~L~p~ 201 (651)
T PTZ00399 131 KWEKEFFEDMKALNVRPPD---VITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKA----GH--VYPKLEPE 201 (651)
T ss_pred HHHHHHHHHHHHcCCCCCc---cccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccc----hh--hHHhhChh
Confidence 8889999999999999877 688999999999999999999999995310000 00000000 00 11112221
Q ss_pred hhHHHHHHhhCCcccCCceEEEEEe-eccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccc----------hhh
Q psy9410 147 ESLNLFRRMRSGEFKDGAHVLRVKI-NMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHP----------ISD 214 (736)
Q Consensus 147 ~~~~~~~~m~~g~~~~~~~~~R~k~-~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~----------vdD 214 (736)
.. .....|..|. +. + +....+.+..||+||+...+.+|.|.++| .+.|.||..|+ +|-
T Consensus 202 ~~-~~~~~~~~g~---~~------l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DI 271 (651)
T PTZ00399 202 SV-ADEDRIAEGE---GA------LGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDI 271 (651)
T ss_pred hc-CCHHHHhccc---CC------ccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCccee
Confidence 11 0011222221 00 1 11224566789999999887789999999 68999998774 466
Q ss_pred hccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccH
Q psy9410 215 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTL 293 (736)
Q Consensus 215 ~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl 293 (736)
|-.|+.+++.. |++..++..++...-.| +..| |.+||+++|.|||||+++.+ |+
T Consensus 272 h~gG~DL~FPH--HeNEiAQseA~~~~~~~--------v~y~~H~G~L~i~G~KMSKSLGNfI---------------tp 326 (651)
T PTZ00399 272 HSGGIDLKFPH--HDNELAQSEAYFDKHQW--------VNYFLHSGHLHIKGLKMSKSLKNFI---------------TI 326 (651)
T ss_pred eccCCCCCCCc--chhHHHHHHHhhCCCCC--------CcEEEEEEEEEeccchhhhcCCCcc---------------cH
Confidence 66777777664 34445666666543222 2333 77999999999999998765 99
Q ss_pred HHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 294 IGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 294 ~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
.+++++ |.|++||.|++.. ....+.+|+++.+.+..+
T Consensus 327 ~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~ 363 (651)
T PTZ00399 327 RQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAIE 363 (651)
T ss_pred HHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHHH
Confidence 999998 9999999888755 556677899998877654
No 42
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.82 E-value=5.8e-20 Score=186.17 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=140.9
Q ss_pred ECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCccc------------ccHHHHHHHHHHHHHcCCCCC
Q psy9410 23 FAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLK------------ENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 23 faP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r------------~~~~~~~~i~~dl~wLGi~~d 85 (736)
.+|||||++||||+|++++.+.+||- ++..++--++|.+.+. ....+.+.+.+++++||+.+|
T Consensus 7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d 86 (212)
T cd00671 7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD 86 (212)
T ss_pred cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence 46999999999999999999999883 4445555556666332 346777899999999999999
Q ss_pred CCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCce
Q psy9410 86 KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAH 165 (736)
Q Consensus 86 ~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~ 165 (736)
. .++.|++.+.+.++++.|+++|++|.- +|..
T Consensus 87 ~----~~~es~~~~~~~~~i~~L~~~g~~~~~--------------------------------------------~g~~ 118 (212)
T cd00671 87 V----WFGESSYLGLMGKVVELLEELGLLYEE--------------------------------------------DGAL 118 (212)
T ss_pred e----ecchhhhhhHHHHHHHHHHHCCCEEEe--------------------------------------------CCcE
Confidence 7 678888888999999999999999831 1122
Q ss_pred EEEEEeeccCCCCCCCCcEEEEeccCCccccCCccccccccc---cccchhhhcccccee--eccccccCchhHHHHHHh
Q psy9410 166 VLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYD---YAHPISDAIENITHS--ICTLEFQDHRPFYEWILN 240 (736)
Q Consensus 166 ~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~---fa~~vdD~~~githv--irg~e~~~~~~~~~~l~~ 240 (736)
++.. .......|+||.|+||+ |+|. +|+.++++.++++++ ++|.|+..|.+++.++++
T Consensus 119 ~~~~-----~~~~~~~d~vl~rsdG~------------~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~ 181 (212)
T cd00671 119 WLDL-----TEFGDDKDRVLVRSDGT------------YTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALE 181 (212)
T ss_pred EEec-----hhhCCCCCeEEEECCCC------------ccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHH
Confidence 2221 11224569999999996 9996 799999999999999 899999999999999999
Q ss_pred hcccCCcCCCCCC--ceEEEEeeecC-Ceecchhhh
Q psy9410 241 KIDKTNFIKRPFP--KQYEFSRLNLT-HTITSKRKL 273 (736)
Q Consensus 241 ~l~~~~~~~~~~p--~~~~f~~l~~~-g~klSKr~~ 273 (736)
+||+. ..| .++.|+.+.+. |.|||||++
T Consensus 182 ~lg~~-----~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 182 LLGYD-----EAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred HcCCC-----CCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 99981 123 22345566655 889999973
No 43
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=99.81 E-value=1.5e-20 Score=175.72 Aligned_cols=126 Identities=56% Similarity=1.079 Sum_probs=109.1
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCc-cccCCCCCcccceeccccccCcch
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLN-TIYGNEKSRCCAIIKENKCIGCTL 613 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~d~~~Ci~Cg~ 613 (736)
-+|+++|++||||||..||++|+++.+..+.|++|+......++..+|+...... .............+|++.|+||..
T Consensus 43 lLPqsqCgqCGy~GC~pYAeAia~~ga~in~C~PGG~~vi~kI~elLgvep~~~~~~~~~~~~~~~va~i~e~~ciGCtk 122 (198)
T COG2878 43 LLPQTQCGQCGYPGCRPYAEAIAEGGAKINRCAPGGEAVIRKIAELLGVEPPPADGSEHGEEQARMVALIDEANCIGCTK 122 (198)
T ss_pred hCCccccccCCCCccHHHHHHHHcCCCccccCCCCcHHHHHHHHHHhcCCCCCcchhhhhccccceeeEecchhccccHH
Confidence 4799999999999999999999999999999999999999999999995544322 222223455678899999999999
Q ss_pred hHhhCcccccccccccceeecccCccCccchhhcCccCceeecccCC
Q psy9410 614 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 660 (736)
Q Consensus 614 C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 660 (736)
|+++||++||....+..+.+..+.|++|+.|+..||+++|.+.+...
T Consensus 123 CiqaCpvdAivg~~~~mhtv~~dlCTGC~lCva~CPtdci~m~~~~~ 169 (198)
T COG2878 123 CIQACPVDAIVGATKAMHTVIADLCTGCDLCVAPCPTDCIEMQPVAE 169 (198)
T ss_pred HHHhCChhhhhccchhHHHHHHHHhcCCCcccCCCCCCceeeeeccc
Confidence 99999999999888878888889999999999999999999987654
No 44
>PRK08764 ferredoxin; Provisional
Probab=99.81 E-value=5.8e-20 Score=171.92 Aligned_cols=124 Identities=52% Similarity=1.065 Sum_probs=101.6
Q ss_pred cccccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCc
Q psy9410 532 EQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGC 611 (736)
Q Consensus 532 er~g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~C 611 (736)
...-++..+|+.||+++|++||++|++|.+++..|+.++.+.++.++..+|+...++..............++.++|++|
T Consensus 11 ~~~~lp~~ncg~cg~~~c~~~a~~~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~~~~~~~~~~~~~~~~~~Ci~C 90 (135)
T PRK08764 11 LDRLLPQTQCGQCGFDGCRPYAQAMARGEATIDRCPPGGDAGARALAQVLGVPARPYDRSRGTHKLPQVAWIVEADCIGC 90 (135)
T ss_pred HHHhCCCCCCccCCCcCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccccccCCCCCCeeEEECcccCcCc
Confidence 34457899999999999999999999999999999999999999999999997655533222221222334567899999
Q ss_pred chhHhhCcccccccccccceeecccCccCccchhhcCccCceee
Q psy9410 612 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 612 g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
++|+++||.++|.........++..+|++||.|+.+||++||.+
T Consensus 91 ~~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 91 TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred chHHHhCChhhcCccCCCceeecCCcCcCccchhhhcCccceEe
Confidence 99999999999987554445567789999999999999999976
No 45
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.78 E-value=9.1e-19 Score=199.67 Aligned_cols=229 Identities=17% Similarity=0.175 Sum_probs=161.7
Q ss_pred CCCcE-EEE-CCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcc-------------cccHHHHHHHHH
Q psy9410 16 LPQVI-TRF-APEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPL-------------KENKEYVNSIIK 75 (736)
Q Consensus 16 ~~~~v-~Rf-aP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~-------------r~~~~~~~~i~~ 75 (736)
.+++| +-| +|||||+|||||+|++++++.+||. |+..++.-++|.+.+ ...+.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567 656 7999999999999999999999984 445666667888733 345788899999
Q ss_pred HHHHcCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHH
Q psy9410 76 TIKWLNFNWDKVKKRIYYASDY--FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFR 153 (736)
Q Consensus 76 dl~wLGi~~d~gp~~~~~~Se~--~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~ 153 (736)
+|++||+.+|. .++.|+. .+.+.++++.|.++|++|.-
T Consensus 189 ~l~~LgI~~D~----~~~es~~~~~~~~~~~~~~L~~~G~~y~~------------------------------------ 228 (507)
T PRK01611 189 DLDRLGVHFDV----WFSESELYYNGKVDEVVEDLKEKGLLYVE------------------------------------ 228 (507)
T ss_pred HHHHcCCeeeE----EeecCcchhcchHHHHHHHHHHCCCEEEe------------------------------------
Confidence 99999999986 4455544 34678899999999999820
Q ss_pred HhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcccccccc---ccccchhhhcccccee--eccccc
Q psy9410 154 RMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIENITHS--ICTLEF 228 (736)
Q Consensus 154 ~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~~~githv--irg~e~ 228 (736)
.+|..+++.. ..++..|+||+|+||+ ||| |+|....-+.. .+++ |.|.++
T Consensus 229 -------~~Ga~~~~~~-----~~~~~~~~vl~ksdG~------------~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q 283 (507)
T PRK01611 229 -------SDGALWVRLT-----EFGDDKDRVLIKSDGT------------YTYFTRDIAYHLYKFER-FDRVIYVVGADH 283 (507)
T ss_pred -------eCCcEEEEch-----hhCCCCCeEEEECCCC------------ccchHHHHHHHHHHHhh-cCEEEEEECCCh
Confidence 0122232211 1112248999999997 777 34444443333 4566 679999
Q ss_pred cCchhHHHHHHhhcccCCcCCCCCCceEEEEe-----ee-cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCC
Q psy9410 229 QDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-----LN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYT 302 (736)
Q Consensus 229 ~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~-----l~-~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~ 302 (736)
..|..+...+++.+|+ ..+..-.+.| +. -+|.|||||+|+.+ ++.+|+++++.
T Consensus 284 ~~hf~~~~~~~~~lg~------~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i---------------~l~dll~~a~g 342 (507)
T PRK01611 284 HGHFKRLKAALKALGY------DPDALEVLLHQMVGLVRGGEGVKMSTRAGNVV---------------TLDDLLDEAVG 342 (507)
T ss_pred HHHHHHHHHHHHHcCC------CcccceEEEEEEEEeeECCCCCcccCCCCcee---------------EHHHHHHHHHH
Confidence 9999999999999997 3221012333 22 25779999998754 89999998777
Q ss_pred H----------------HHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 303 P----------------ESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 303 p----------------eai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
. +|||.|++.. -..++..|+|+.+.+..
T Consensus 343 ~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~~~~ 386 (507)
T PRK01611 343 RARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDLALSFE 386 (507)
T ss_pred HHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHHHHhhc
Confidence 7 8888766655 34456678888765543
No 46
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=99.76 E-value=1.5e-18 Score=171.55 Aligned_cols=138 Identities=51% Similarity=1.018 Sum_probs=109.0
Q ss_pred ccccccccccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCC-CCcccceecc
Q psy9410 527 KHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNE-KSRCCAIIKE 605 (736)
Q Consensus 527 ~~~q~er~g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~d~ 605 (736)
.++.....-+|..+|+.||+++|.++|++++ +......|+.++.+.++.++..+|+...++....... .....+.+|.
T Consensus 35 p~~~~l~~~lP~~nCg~Cg~~~c~~~a~av~-~~~~~~~C~~~G~c~lq~la~~~Gv~~~~~~~~~~~~~~~~~~~~id~ 113 (191)
T PRK05113 35 PIVEKIDAILPQSQCGQCGYPGCRPYAEAIA-NGEKINKCPPGGEATMLKLAELLGVEPQPLDGEAQEATPARKVAFIDE 113 (191)
T ss_pred ChHHHHHHhCCcCCccccCCCCcHHHHHHHh-CCCCcCcCCCCchHHHHHHHHHhCCCcccCccccccccccCceeEEeC
Confidence 3343334468899999999999999999999 4567889999999999999999998766553221111 1234678899
Q ss_pred ccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecccCCccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW 665 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~ 665 (736)
++|++|+.|+++||++++....++...++...|++||.|+.+||++||.+.+.......|
T Consensus 114 ~~Ci~Cg~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~vCP~~AI~~~~~~~~~~~w 173 (191)
T PRK05113 114 DNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTGCDLCVAPCPTDCIEMIPVAETPDNW 173 (191)
T ss_pred CcCCCCChhhhhCCHhhhecccCCceeecCCcCCchHHHHHHcCcCceEEeeccccccCC
Confidence 999999999999999999876555566788999999999999999999998754333333
No 47
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=99.73 E-value=9.4e-18 Score=162.62 Aligned_cols=122 Identities=57% Similarity=1.095 Sum_probs=103.2
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccC--CCCCcccceeccccccCcc
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEKSRCCAIIKENKCIGCT 612 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~d~~~Ci~Cg 612 (736)
-+|..+|+.||+++|.++|+++++++. ...|+.++.+.++.++..+|+...++..... .......+.+|.++|++|+
T Consensus 41 ~lP~~nCg~Cg~~~c~~~a~av~~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg 119 (165)
T TIGR01944 41 LLPQTQCGQCGYPGCRPYAEAIAEGEA-INKCPPGGEAVILALAELLGVEPIPQPLDADAGTIQPPMVALIDEDNCIGCT 119 (165)
T ss_pred hCCCCCCccCCCCChHHHHHHHHcCCC-cCcCccccHHHHHHHHHHcCCCcccCCccccccccCCCceEEEECCcCCChh
Confidence 478899999999999999999999888 8999999999999999999987654432111 1134556789999999999
Q ss_pred hhHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 613 LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 613 ~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.|+++||++++....+....++...|++||.|+.+||++||.+.+
T Consensus 120 ~C~~aCp~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 164 (165)
T TIGR01944 120 KCIQACPVDAIVGAAKAMHTVIADECTGCDLCVEPCPTDCIEMIP 164 (165)
T ss_pred HHHHhCCccceEecCCCceEeecccccChhHHHHhcCcCceEeeC
Confidence 999999999998766555567788999999999999999998753
No 48
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=4e-16 Score=179.36 Aligned_cols=274 Identities=17% Similarity=0.139 Sum_probs=161.6
Q ss_pred EECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcc-------------cccHHHHHHHHHHHHHcCCC
Q psy9410 22 RFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPL-------------KENKEYVNSIIKTIKWLNFN 83 (736)
Q Consensus 22 RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~-------------r~~~~~~~~i~~dl~wLGi~ 83 (736)
==+|+|||.+||||+|+.+..++++|. ++..|+..+||.+.. .....+.+.|.++|+.|||.
T Consensus 7 ~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~ 86 (511)
T PRK11893 7 TPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNIS 86 (511)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 336999999999999999999999884 456788888888632 23467889999999999999
Q ss_pred CCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc-----cCCCH-------HHHHHhhcCCCCCCCCCC-------CCC
Q psy9410 84 WDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV-----DSQNT-------EEIYINRGNLHEPGRNSP-------FYN 142 (736)
Q Consensus 84 ~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~-----c~~~~-------e~l~~~r~~~~~~g~~~~-------~r~ 142 (736)
+|. .+++++ +.+.+.++.++|.++|++|. .+|.. .++..-.......|.+.. |-.
T Consensus 87 ~D~----~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~ 162 (511)
T PRK11893 87 YDD----FIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFR 162 (511)
T ss_pred cCC----ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEE
Confidence 997 445555 88899999999999999994 23433 332210000000111101 111
Q ss_pred CChhhhHHHHHHhhCCcccCC-ceEEEEEeeccCCCCCCCCcEEEEeccC-CccccCC------cc----------cccc
Q psy9410 143 RLPSESLNLFRRMRSGEFKDG-AHVLRVKINMKSKNINMRDPIIYRIRHV-NHYRTNN------NW----------CIYP 204 (736)
Q Consensus 143 ~~~~~~~~~~~~m~~g~~~~~-~~~~R~k~~~~~~~~~~~D~Vl~R~~~~-~h~~~~~------~w----------~i~P 204 (736)
++. -.+.+.+...+..... ....+-++ ...-...+.|+.|+|.... ++|..++ -| .++|
T Consensus 163 l~~--~~~~l~~~~~~~~~~~~p~~~~~~~-~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p 239 (511)
T PRK11893 163 LSK--YQDKLLELYEANPDFIQPASRRNEV-ISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYP 239 (511)
T ss_pred cHH--HHHHHHHHHHhCCCccCCHHHHHHH-HHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhccc
Confidence 111 0011111111100000 00000000 0001234789999993211 1111111 23 1122
Q ss_pred c----------cccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhh
Q psy9410 205 M----------YDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKL 273 (736)
Q Consensus 205 t----------Y~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~ 273 (736)
. +.+ ..|-|.+|+.++. .|...+.++..+++. ..|+.+ ..+++.++|+|||||++
T Consensus 240 ~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~------~~p~~~~~~g~v~~~G~KMSKS~G 305 (511)
T PRK11893 240 DDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGL------PLPKRVFAHGFLTLDGEKMSKSLG 305 (511)
T ss_pred cccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCC------CCCCEEEeeccEEECCeeecccCC
Confidence 1 001 1222334443332 244455556555554 456544 67888899999999998
Q ss_pred hhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 274 LKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 274 ~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+.+ ++.++.+. |.++++|.|++..+....+.+|+++.+....+
T Consensus 306 N~i---------------~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~ 348 (511)
T PRK11893 306 NVI---------------DPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRIN 348 (511)
T ss_pred cEE---------------cHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHH
Confidence 755 88898888 99999999999988877888899998866544
No 49
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.53 E-value=8.8e-14 Score=149.95 Aligned_cols=89 Identities=24% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCC-------------cccccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
+|+|||.+||||+|+.++.++++|. +...|+..+||.+ ++.....+.+.|.++++.||+++|
T Consensus 8 ~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 5999999999999999999999983 3456666777765 333456888999999999999998
Q ss_pred CCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 86 KVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 86 ~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
. .++.++ +.+...++.++|.++|.+|.
T Consensus 88 ~----~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 88 Y----FIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred C----CeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 6 445554 77788899999999999994
No 50
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.53 E-value=1.6e-14 Score=166.10 Aligned_cols=89 Identities=15% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCcEEEEeccCCccccCCcccccccc---ccccchhhhcc-ccceee--ccccccCchhHHHHHHhhcccCCcCCCCCCc
Q psy9410 181 RDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIE-NITHSI--CTLEFQDHRPFYEWILNKIDKTNFIKRPFPK 254 (736)
Q Consensus 181 ~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~~~-githvi--rg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~ 254 (736)
.|.||.|+||+ +|| |+|...+-+.. +.+++| -|.++..|..+...+++++|+.. ...-.
T Consensus 294 ~~~vl~ksDGt------------~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~---~~~l~ 358 (562)
T PRK12451 294 PPCLIRKSDGA------------TIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTW---VDGME 358 (562)
T ss_pred CceEEEeCCCc------------cccchhHHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCCc---ccCeE
Confidence 58999999997 666 55655554443 666665 48999999999999999999720 00112
Q ss_pred eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHc
Q psy9410 255 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRR 299 (736)
Q Consensus 255 ~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~ 299 (736)
++.|+.++++|+|||||+|+.+ |+.+|++.
T Consensus 359 h~~~g~V~~~g~kmStR~G~~v---------------~l~dLlde 388 (562)
T PRK12451 359 HVPFGLILKDGKKMSTRKGRVV---------------LLEEVLEE 388 (562)
T ss_pred EEeeeeEecCCCCCcCCCCCee---------------EHHHHHHH
Confidence 3467778888999999998654 88888875
No 51
>PRK07118 ferredoxin; Validated
Probab=99.53 E-value=1.1e-14 Score=152.43 Aligned_cols=134 Identities=34% Similarity=0.636 Sum_probs=101.9
Q ss_pred CccccccccccccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccc------cCC---
Q psy9410 524 FPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI------YGN--- 594 (736)
Q Consensus 524 ~~~~~~q~er~g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~------~~~--- 594 (736)
+.+.++.....-+|.++|++||+|+|.+||++|+++....+.||+++...+..++..+|......... .+.
T Consensus 32 ~~d~~~~~i~~~lp~~nCg~Cg~~~C~~~a~a~~~g~~~~~~C~~~~~~~~~~i~~~lg~~~~~~~~~~a~v~C~g~~~~ 111 (280)
T PRK07118 32 EEDPRVEAVREVLPGANCGGCGYPGCDGYAEAVVNGDAPPNLCPVGGAEVAEKVAEILGKEAAESEPKVAVVRCQGTCDK 111 (280)
T ss_pred cCCCcHHHHHHhCCCCCCCCCCccCHHHHHHHHHcCCCCcccCCCCCHHHHHHHHHHhCCCCCcCCceEEEEecCCChhh
Confidence 33444444445689999999999999999999999999999999999999999999999754322110 000
Q ss_pred --C--CCcc--------cce----eccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 595 --E--KSRC--------CAI----IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 595 --~--~~~~--------~~~----~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
. ...+ .+. .....|++||.|+++||+++|.+.+ +...++.++|++|+.|+.+||+++|.+.+.
T Consensus 112 ~~~~~~y~g~~~C~~~~~~~~g~~~c~~~CigCg~C~~aCp~~AI~~~~-g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~ 190 (280)
T PRK07118 112 AKERYEYQGIKDCAAAALLFGGPKGCSYGCLGLGSCVAACPFDAIHIEN-GLPVVDEDKCTGCGACVKACPRNVIELIPK 190 (280)
T ss_pred ccccccccCcccHHHHHHhccCcccCCCCCcChhHHHHhCCccCeEccC-CeEEEChhhCcChhHHHHhcCccceeeecc
Confidence 0 0000 011 1224799999999999999998765 556788999999999999999999988754
No 52
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=6.8e-14 Score=157.77 Aligned_cols=279 Identities=18% Similarity=0.157 Sum_probs=174.9
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
-|.|||.+||||+++.|..+.+||. ..|.=++=+..|| |+....++.+.+.+++++|+|++|
T Consensus 13 lpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD 92 (558)
T COG0143 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD 92 (558)
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4999999999999999999999985 4577777777777 444567888999999999999999
Q ss_pred CCCCccccccccHHHHHHHHHHHHHcCCCccc-----CCCHHHH----------------HHhhcCCCCCCCCCCC-CCC
Q psy9410 86 KVKKRIYYASDYFDILYKIAEYLIISGDAYVD-----SQNTEEI----------------YINRGNLHEPGRNSPF-YNR 143 (736)
Q Consensus 86 ~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l----------------~~~r~~~~~~g~~~~~-r~~ 143 (736)
. |.-+..++|.+..+++-++|.++|..|.- +|...+. +..|+++.+ .| |.+
T Consensus 93 ~--F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce-----~Cg~~~ 165 (558)
T COG0143 93 N--FIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCE-----NCGRTL 165 (558)
T ss_pred c--cccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhh-----hccCcC
Confidence 8 45555667777788888999999999932 3333322 111111100 00 011
Q ss_pred Chhh-----------------------hHHHHHHhhCCcccCCc-eEE---EEEeeccCCCCCCCCcEEEEeccCCcccc
Q psy9410 144 LPSE-----------------------SLNLFRRMRSGEFKDGA-HVL---RVKINMKSKNINMRDPIIYRIRHVNHYRT 196 (736)
Q Consensus 144 ~~~~-----------------------~~~~~~~m~~g~~~~~~-~~~---R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~ 196 (736)
++.+ .+..++.+....+...+ ..+ |.+.-.+.-+..++|+-|-|.+.. |
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~----W 241 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD----W 241 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCC----C
Confidence 1111 11111111111111110 000 000000112355788888885432 3
Q ss_pred CCcc-----cccccc------------ccc-----cchhhh----ccccceeecccccc-CchhHHHHHHhhcccCCcCC
Q psy9410 197 NNNW-----CIYPMY------------DYA-----HPISDA----IENITHSICTLEFQ-DHRPFYEWILNKIDKTNFIK 249 (736)
Q Consensus 197 ~~~w-----~i~PtY------------~fa-----~~vdD~----~~githvirg~e~~-~~~~~~~~l~~~l~~~~~~~ 249 (736)
|-++ .++..| .++ ...+.+ .-.+-|+| |.|.. -|+-.+.+++.+.|.
T Consensus 242 GipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfI-GKDii~FHav~wPamL~~~~~----- 315 (558)
T COG0143 242 GIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI-GKDIIRFHAVYWPAMLMAAGL----- 315 (558)
T ss_pred CccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEe-ccccCcchhhHHHHHHHhCCC-----
Confidence 3333 111111 111 111111 22345776 55543 377788899999887
Q ss_pred CCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHH
Q psy9410 250 RPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILE 328 (736)
Q Consensus 250 ~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~ 328 (736)
..|.++ ..+.|.++|.|||||+++.+ ...++.++ |.++++|.||+....-.+|.+|+|+.|.
T Consensus 316 -~lP~~i~ahg~l~~~G~KmSKSrG~~V---------------~~~~~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~ 378 (558)
T COG0143 316 -PLPTRIFAHGFLTLEGQKMSKSRGNVV---------------DPDELLEQ-YGVDALRYYLARELPEGSDGDFSWEDFV 378 (558)
T ss_pred -CCCCEEEeeeeEEECCccccccCCcEE---------------eHHHHHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHH
Confidence 678776 45669999999999997643 56777777 9999999999998878889999999999
Q ss_pred HHHhcccC
Q psy9410 329 QALRDDLD 336 (736)
Q Consensus 329 ~~~~~~l~ 336 (736)
+.++.+|-
T Consensus 379 ~rvN~dL~ 386 (558)
T COG0143 379 ERVNADLA 386 (558)
T ss_pred HHHHHHHH
Confidence 98775553
No 53
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.52 E-value=3.1e-14 Score=164.41 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=56.8
Q ss_pred CCcEEEEeccCCccccCCcccccccc---ccccchhhhccccceee--ccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 181 RDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIENITHSI--CTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 181 ~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~~~githvi--rg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
.|.||.|+||+ +|| |+|....-...+.+++| -|.++..|..+...++.++|+ ..|.+
T Consensus 298 ~~~vl~ksDGt------------~~Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~------~~~~~ 359 (566)
T TIGR00456 298 KDRVLQKSDGT------------YLYLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGF------YKKKE 359 (566)
T ss_pred CCeEEEECCCC------------ceechhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCC------CCCCc
Confidence 58999999997 777 44444443334667765 599999999999999999997 44533
Q ss_pred -EEEEeeecCCeecchhhhhhh
Q psy9410 256 -YEFSRLNLTHTITSKRKLLKL 276 (736)
Q Consensus 256 -~~f~~l~~~g~klSKr~~~~~ 276 (736)
.+.++-.+++.+||||+|+.+
T Consensus 360 l~h~~~~~V~~~kmSkr~Gn~V 381 (566)
T TIGR00456 360 LIHLNFGMVPLGSMKTRRGNVI 381 (566)
T ss_pred eEEEEEEEEECCCCCccCCcee
Confidence 345555567789999997644
No 54
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=99.50 E-value=3.2e-15 Score=130.91 Aligned_cols=85 Identities=31% Similarity=0.774 Sum_probs=60.0
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
|.+..|.||..|+|+ .+||+++.. .+...+.+.+|+++|+||+.|+
T Consensus 4 ~~~~~C~hC~~ppC~-------------~~CP~~Ai~---------------------~~~~~G~V~id~~~CigC~~C~ 49 (98)
T PF13247_consen 4 FVPVQCRHCEDPPCV-------------EACPTGAIY---------------------KDPEDGIVVIDEDKCIGCGYCV 49 (98)
T ss_dssp EEEEC---BSS-HHH-------------HHCTTTSEE---------------------EETTTS-EEE-TTTCCTHHHHH
T ss_pred EeCCcCcCcCCCchh-------------hhCCccceE---------------------EEcCCCeEEechhhccCchhhh
Confidence 677899999999999 999999753 2334688999999999999999
Q ss_pred hhCcccccccccccceeecccCccCc---------cchhhcCccCceeecc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIE 657 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~C---------g~Cv~~CP~~Ai~~~~ 657 (736)
.+||+++|.++.... ...+|.+| +.|+++||++||.|.+
T Consensus 50 ~aCP~~ai~~~~~~~---~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 50 EACPYGAIRFDPDTG---KARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp HH-TTS-EEEETTTT---CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred hhhccCcceeecccc---cCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 999999999876543 23579999 7899999999999875
No 55
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.50 E-value=3.7e-13 Score=144.85 Aligned_cols=248 Identities=18% Similarity=0.147 Sum_probs=140.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcc--------------------------cccHHHHHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPL--------------------------KENKEYVNS 72 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~--------------------------r~~~~~~~~ 72 (736)
+|+|||.+||||+++.++.+.++|. +...|+..+|+.+.. ....++.+.
T Consensus 8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T cd00668 8 PPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGE 87 (312)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999888888873 445666666664411 113577789
Q ss_pred HHHHHHHcCCCCC--CCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHH
Q psy9410 73 IIKTIKWLNFNWD--KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLN 150 (736)
Q Consensus 73 i~~dl~wLGi~~d--~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~ 150 (736)
|.++|+.|||..| . +..+...++.+.+.++.++|.++|++|.-.-+. +. ....+-..+ +-...
T Consensus 88 ~~~~l~~lgI~~Dw~~--~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~------~~~~f~~~~-~l~~~ 152 (312)
T cd00668 88 HKEDFRRLGISYDWSD--EYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RI------TEQWFFDMP-KFKEK 152 (312)
T ss_pred HHHHHHHhCccccCCC--CeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Ee------eeeEEEEcH-HHHHH
Confidence 9999999999776 4 123345567788889999999999999632111 00 000011111 00111
Q ss_pred HHHHhhCCc-ccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhh---------cc---
Q psy9410 151 LFRRMRSGE-FKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDA---------IE--- 217 (736)
Q Consensus 151 ~~~~m~~g~-~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~---------~~--- 217 (736)
+.+.+..+. .++. .+-.+..--.+..|+.|.|... ||- ..|.+++-|=+|-. ..
T Consensus 153 ~~~~~~~~~~~p~~-----~~~~~~~~l~~~~d~~isR~~~-----WG~---~~P~~~i~~Wfds~~~~~~~~~~~~~~~ 219 (312)
T cd00668 153 LLKALRRGKIVPEH-----VKNRMEAWLESLLDWAISRQRY-----WGT---PLPEDVFDVWFDSGIGPLGSLGYPEEKE 219 (312)
T ss_pred HHHHHhcCCcCChH-----HHHHHHHHHhCCCCeEEeccCC-----CCC---cCCcccccchhhccHHHHHHcCCCccch
Confidence 122222221 0000 0000000001223999988542 221 23445444411110 00
Q ss_pred ------ccceeecccccc-CchhHHHHHHhhcccCCcCCCCCCc-eEEEEeeecCC-eecchhhhhhhhhccccCCCCCC
Q psy9410 218 ------NITHSICTLEFQ-DHRPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTH-TITSKRKLLKLLEKKIVDGWDDP 288 (736)
Q Consensus 218 ------githvirg~e~~-~~~~~~~~l~~~l~~~~~~~~~~p~-~~~f~~l~~~g-~klSKr~~~~~v~~~~~~gwddp 288 (736)
..+--+-|.|.. .|......+..+++. ...|. .+-.+++..+| .|||||+++.+
T Consensus 220 ~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~g~KmSKS~gn~v------------ 282 (312)
T cd00668 220 WFKDSYPADWHLIGKDILRGWANFWITMLVALFG-----EIPPKNLLVHGFVLDEGGQKMSKSKGNVI------------ 282 (312)
T ss_pred hhhhcCCceEEEEecchhhhHHHHHHHHHHHhcC-----CCCcceeEECcEEEcCCCccccccCCCcC------------
Confidence 112112254544 455555566555553 01333 33446677777 99999998755
Q ss_pred CcccHHHHHHcCCCHHHHHHHHHHcCcccCCc
Q psy9410 289 RMPTLIGMRRRGYTPESIKLFCKRIGVSKSDS 320 (736)
Q Consensus 289 r~~tl~~l~~~G~~peai~~~~~~~g~s~~~~ 320 (736)
++.++.++ |.++|+|.|++..+....+.
T Consensus 283 ---~~~d~~~~-~~~da~R~~l~~~~~~~~d~ 310 (312)
T cd00668 283 ---DPSDVVEK-YGADALRYYLTSLAPYGDDI 310 (312)
T ss_pred ---CHHHHHHH-cCcHHHHHHHHhcCCccCCC
Confidence 88999988 99999999998876544443
No 56
>PLN02224 methionine-tRNA ligase
Probab=99.48 E-value=9.8e-14 Score=159.84 Aligned_cols=282 Identities=16% Similarity=0.112 Sum_probs=155.3
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCC---EEEEEeeCCC-------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNG---LCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G---~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
|==+|+|||.+|||||++.++.+.+||. ..| .|+.-+||.+ |.....++.+.+.+.+++|||
T Consensus 74 ttp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I 153 (616)
T PLN02224 74 TTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDI 153 (616)
T ss_pred eCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC
Confidence 5556899999999999999999999984 334 4444444443 223346777888999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCCChh----h----
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNRLPS----E---- 147 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~~~~----~---- 147 (736)
++|. .+++++ |.+..+++..+|.++|++|.. +|..++.--.-.+.... ..|+.-..+++ +
T Consensus 154 ~~D~----f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~-~~~~~~~~~~~~~~e~~~ff 228 (616)
T PLN02224 154 AYDK----FIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLEN-NCCPVHQMPCVARKEDNYFF 228 (616)
T ss_pred CCCc----CeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCC-CCCCCCCCcceEEecceEEE
Confidence 9997 666666 777778888999999999943 33332210000000000 01111111110 0
Q ss_pred hHHHHHHhhCCcccCCceEEE----EEeeccCCCCCCCCcEEEEec---cCCccccCCcccccc------ccccccc--h
Q psy9410 148 SLNLFRRMRSGEFKDGAHVLR----VKINMKSKNINMRDPIIYRIR---HVNHYRTNNNWCIYP------MYDYAHP--I 212 (736)
Q Consensus 148 ~~~~~~~m~~g~~~~~~~~~R----~k~~~~~~~~~~~D~Vl~R~~---~~~h~~~~~~w~i~P------tY~fa~~--v 212 (736)
.+..|+......+.+....++ .+.-...-...+.|.-|-|.. |.+-|..+ .-.+|. .|--+.. -
T Consensus 229 ~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~-~~viYVWfDAl~~Yls~~~~~~ 307 (616)
T PLN02224 229 ALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDD-KQTIYVWFDALLGYISALTEDN 307 (616)
T ss_pred EhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCC-CcEEEEehhhHHHHHHHhcccc
Confidence 011110000000111000000 000001112235666666632 11111100 001111 1100000 0
Q ss_pred hh---------hccccceeecccccc-CchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccc
Q psy9410 213 SD---------AIENITHSICTLEFQ-DHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKI 281 (736)
Q Consensus 213 dD---------~~~githvirg~e~~-~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~ 281 (736)
++ ..-..-|++ |.|.. -|+..+..++.++|+ ..|+++ ..++|.++|.|||||+++.+
T Consensus 308 ~~~~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~------~~P~~i~~~g~l~~eG~KMSKS~GN~i----- 375 (616)
T PLN02224 308 KQQNLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGL------ELPKMVFGHGFLTKDGMKMGKSLGNTL----- 375 (616)
T ss_pred cccccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCC------CCCcEEEecccEecCCccccccCCccC-----
Confidence 00 001123444 54433 366677777777776 567665 45668999999999998754
Q ss_pred cCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 282 VDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 282 ~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
++.++.++ |.++++|.||+..+....+.+|+++.+.+.+
T Consensus 376 ----------~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~ 414 (616)
T PLN02224 376 ----------EPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIV 414 (616)
T ss_pred ----------CHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHH
Confidence 67788877 9999999999998887788889998875543
No 57
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=99.48 E-value=1.9e-14 Score=141.10 Aligned_cols=88 Identities=26% Similarity=0.656 Sum_probs=74.9
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
-|.+..|.||..|+|+ .+||+++.. .....+++.+|.++||||+.|
T Consensus 63 ~~~~~~C~HC~~ppCv-------------~vCPtgA~~---------------------k~~~dGiV~vd~d~CIGC~yC 108 (203)
T COG0437 63 YYLSISCMHCEDPPCV-------------KVCPTGALF---------------------KREEDGIVLVDKDLCIGCGYC 108 (203)
T ss_pred EEecccccCCCCCccc-------------ccCCCcceE---------------------EecCCCEEEecCCcccCchHH
Confidence 3677999999999999 999999853 123468999999999999999
Q ss_pred HhhCcccccccccccceeecccCccCc------c---chhhcCccCceeecccC
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGC------D---LCIKKCPVNCISMIEVT 659 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~C------g---~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+||++|+.++..... ..+|++| | .||++||++|+.|.+.+
T Consensus 109 i~ACPyga~~~~~~~~~---~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~ 159 (203)
T COG0437 109 IAACPYGAPQFNPDKGV---VDKCTFCVDRVAVGKLPACVEACPTGALIFGDID 159 (203)
T ss_pred HhhCCCCCceeCcccCc---ccccCcchhhHhcCCCCcccccCCcccccccchh
Confidence 99999999998764322 4789999 6 89999999999998764
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.47 E-value=2.2e-13 Score=137.40 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=59.4
Q ss_pred ccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCccc-------------ccHHHH
Q psy9410 11 KYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLK-------------ENKEYV 70 (736)
Q Consensus 11 ~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r-------------~~~~~~ 70 (736)
.|.|..++++ +-+.|+|+|++||||+|+.++.+.+|| +++..|+..+||.+... ....+.
T Consensus 12 ~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~ 91 (213)
T cd00672 12 EFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYT 91 (213)
T ss_pred eeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4556667776 899999999999999999999999998 35678999999997433 235667
Q ss_pred HHHHHHHHHcCCCC
Q psy9410 71 NSIIKTIKWLNFNW 84 (736)
Q Consensus 71 ~~i~~dl~wLGi~~ 84 (736)
+.+.++++.|||.+
T Consensus 92 ~~f~~~~~~l~i~~ 105 (213)
T cd00672 92 KEFFEDMKALNVLP 105 (213)
T ss_pred HHHHHHHHHcCCCC
Confidence 77777788888877
No 59
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.47 E-value=6e-13 Score=153.55 Aligned_cols=281 Identities=18% Similarity=0.174 Sum_probs=157.4
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCC-------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
|--+|+|||.+||||+|+.+..+.++|. ++..|+..+||.+ +......+.+.|.+++++|||
T Consensus 4 t~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI 83 (530)
T TIGR00398 4 TTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNI 83 (530)
T ss_pred ecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5567999999999999999999999973 3345666666654 333356888999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc-----cCCCHHHHH--H--hhcCCC------CCCC---------
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV-----DSQNTEEIY--I--NRGNLH------EPGR--------- 136 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~-----c~~~~e~l~--~--~r~~~~------~~g~--------- 136 (736)
.+|. .+++++ +.+.+.++.++|.++|++|. -+|..++.- + ..+... ..|.
T Consensus 84 ~~D~----~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~ 159 (530)
T TIGR00398 84 SFDR----FIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHL 159 (530)
T ss_pred CCCC----CccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccC
Confidence 9986 444444 88888999999999999993 234332210 0 011000 0000
Q ss_pred ---------CCCCCCCChhh--------hHHHHHHhhCCcccCCceEEEE--Ee--ec-cCCCCCCCCcEEEEecc-CCc
Q psy9410 137 ---------NSPFYNRLPSE--------SLNLFRRMRSGEFKDGAHVLRV--KI--NM-KSKNINMRDPIIYRIRH-VNH 193 (736)
Q Consensus 137 ---------~~~~r~~~~~~--------~~~~~~~m~~g~~~~~~~~~R~--k~--~~-~~~~~~~~D~Vl~R~~~-~~h 193 (736)
...|.. .++- .+..+.+.....+.+++...+. +. -+ +.-...+.|+-|-|... =++
T Consensus 160 ~~~~l~~p~~~~~~~-~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGi 238 (530)
T TIGR00398 160 EPTELINPRCKICGA-KPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGI 238 (530)
T ss_pred CHHHhcCCccccCCC-cceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCe
Confidence 000100 1110 0011111000000000000000 00 00 00122356777777443 112
Q ss_pred c--ccCCcccccc------ccccccc---------hhhh-----ccccceeeccccccC-chhHHHHHHhhcccCCcCCC
Q psy9410 194 Y--RTNNNWCIYP------MYDYAHP---------ISDA-----IENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKR 250 (736)
Q Consensus 194 ~--~~~~~w~i~P------tY~fa~~---------vdD~-----~~githvirg~e~~~-~~~~~~~l~~~l~~~~~~~~ 250 (736)
| .+.+ -.+|+ .| ++.. ..+. ...+.|++ |.|..- |+..+..++.++|+
T Consensus 239 pvP~~~~-~~~yvW~da~~~y-~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~-G~Di~~~h~~~~~a~l~~~~~------ 309 (530)
T TIGR00398 239 PVPNDPN-KVVYVWFDALIGY-ISSLGILSGDTEDWKKWWNNDEDAELIHFI-GKDIVRFHTIYWPAMLMGLGL------ 309 (530)
T ss_pred eCCCCCC-cEEEEeecchHHh-HhhhccccCChhhHHHhCCCCCCceEEEEE-ecccchhHHHHHHHHHHhCCC------
Confidence 2 1111 01111 11 1110 0000 01123333 544332 34455567777776
Q ss_pred CCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHH
Q psy9410 251 PFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 329 (736)
Q Consensus 251 ~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~ 329 (736)
..|+.+ .++++..+|.|||||+++.+ ++.++.++ |.++++|.|++..+....+.+|+++.+.+
T Consensus 310 ~~~~~~~~~g~v~~~g~KmSKS~Gn~i---------------~~~d~i~~-~g~D~lR~~l~~~~~~~~d~~f~~~~l~~ 373 (530)
T TIGR00398 310 PLPTQVFSHGYLTVEGGKMSKSLGNVV---------------DPSDLLAR-FGADILRYYLLKERPLGKDGDFSWEDFVE 373 (530)
T ss_pred CCCCEEEeeccEEECCceecccCCcee---------------cHHHHHHH-cCchHHHHHHhhCCCCCCCCCCCHHHHHH
Confidence 456443 67888899999999998654 78888887 99999999999888666788899998877
Q ss_pred HH
Q psy9410 330 AL 331 (736)
Q Consensus 330 ~~ 331 (736)
..
T Consensus 374 ~~ 375 (530)
T TIGR00398 374 RV 375 (530)
T ss_pred HH
Confidence 64
No 60
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.45 E-value=1.8e-13 Score=161.10 Aligned_cols=284 Identities=18% Similarity=0.176 Sum_probs=154.3
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCC---EEEEEeeCCC-------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNG---LCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G---~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
|==.|+|||.+||||+++.+..+.++|. ..| .|+.-.||.+ |+.....+.+.|.++|++|||
T Consensus 9 t~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI 88 (648)
T PRK12267 9 TTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDI 88 (648)
T ss_pred eeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3334999999999999999999999984 234 4544444443 333357888999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCCChh----h----
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNRLPS----E---- 147 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~~~~----~---- 147 (736)
.+|. .+++|+ |.....++.++|.++|++|.- +|..++.--...+....+....|.. +++ +
T Consensus 89 ~~D~----f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~-~~e~~~~~~~f~ 163 (648)
T PRK12267 89 SYDK----FIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGR-EVELVKEESYFF 163 (648)
T ss_pred CCCC----CeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCC-cCeEEecceEEE
Confidence 9997 556665 777778899999999999943 3433221000000000011111110 000 0
Q ss_pred hHHHHHHhhCCcccCCceEE----EEEeec-cCCCCCCCCcEEEEeccC-CccccCCcccccccc-----------cccc
Q psy9410 148 SLNLFRRMRSGEFKDGAHVL----RVKINM-KSKNINMRDPIIYRIRHV-NHYRTNNNWCIYPMY-----------DYAH 210 (736)
Q Consensus 148 ~~~~~~~m~~g~~~~~~~~~----R~k~~~-~~~~~~~~D~Vl~R~~~~-~h~~~~~~w~i~PtY-----------~fa~ 210 (736)
.+..++......+.+....+ +.+.-. ..-+..+.|+-|-|.... +.|..+++=.++.+| .++.
T Consensus 164 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~ 243 (648)
T PRK12267 164 RMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGS 243 (648)
T ss_pred EcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCC
Confidence 00000000000010110000 000000 111223567777763210 111111110011111 0000
Q ss_pred c----hhhhccccceeecccccc-CchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCC
Q psy9410 211 P----ISDAIENITHSICTLEFQ-DHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDG 284 (736)
Q Consensus 211 ~----vdD~~~githvirg~e~~-~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~g 284 (736)
. ..++.-...|++ |.|.. -|+-.+..++.++|+ ..|+++ -.+++..+|.|||||+++.+
T Consensus 244 ~~~~~~~~~wp~~~~~~-GkDii~fH~i~wpa~l~~~~~------~~p~~v~~hg~l~~eg~KMSKS~GN~i-------- 308 (648)
T PRK12267 244 DDDELFKKFWPADVHLV-GKDILRFHAIYWPIMLMALGL------PLPKKVFAHGWWLMKDGKMSKSKGNVV-------- 308 (648)
T ss_pred CCchHHHhhcccceEEE-eeeecchhHHHHHHHHHhCCC------CCCcEEEecceEEECCceecccCCccc--------
Confidence 0 000000012332 44433 245555566767776 567655 56778899999999998754
Q ss_pred CCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 285 WDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 285 wddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+..++.++ |.++++|.||+..+....+.+|+++.+...++
T Consensus 309 -------~p~d~l~~-ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n 348 (648)
T PRK12267 309 -------DPEELVDR-YGLDALRYYLLREVPFGSDGDFSPEALVERIN 348 (648)
T ss_pred -------CHHHHHHH-cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 67788876 99999999999887777888899998866433
No 61
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.45 E-value=9.2e-13 Score=155.38 Aligned_cols=278 Identities=15% Similarity=0.101 Sum_probs=157.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
+|+|||.+||||+++.++.+.+||. ..|.=++-+.+|| |......|.+.|.+++++|||.+|
T Consensus 10 ~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d 89 (673)
T PRK00133 10 LPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFD 89 (673)
T ss_pred CCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999984 3344444444444 334457899999999999999998
Q ss_pred CCCCcccccc--ccHHHHHHHHHHHHHcCCCcc-----cCCCHHHH-------HH---------hhcCCCCC-CC-----
Q psy9410 86 KVKKRIYYAS--DYFDILYKIAEYLIISGDAYV-----DSQNTEEI-------YI---------NRGNLHEP-GR----- 136 (736)
Q Consensus 86 ~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~-----c~~~~e~l-------~~---------~r~~~~~~-g~----- 136 (736)
. .++++ +|.+..+++.++|+++|++|. .||..++- .. .++++... |.
T Consensus 90 ~----f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~ 165 (673)
T PRK00133 90 N----YGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPT 165 (673)
T ss_pred C----CccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChH
Confidence 6 44444 688999999999999999993 34444321 10 01110000 00
Q ss_pred ---CCCC-C-CCChh----h----hHHHHHHhhCCcccCCceEEEEEe--e-ccCCCCCCCCcEEEEeccC-CccccCCc
Q psy9410 137 ---NSPF-Y-NRLPS----E----SLNLFRRMRSGEFKDGAHVLRVKI--N-MKSKNINMRDPIIYRIRHV-NHYRTNNN 199 (736)
Q Consensus 137 ---~~~~-r-~~~~~----~----~~~~~~~m~~g~~~~~~~~~R~k~--~-~~~~~~~~~D~Vl~R~~~~-~h~~~~~~ 199 (736)
...| + ...++ + .+..+.......+..... ++-.. . ...-...+.|+.|-|...= +.|..+++
T Consensus 166 ~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~ 244 (673)
T PRK00133 166 ELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGE-LQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAP 244 (673)
T ss_pred hhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhCCCcccceeeeCCccceECCCCC
Confidence 0000 0 00111 0 011111111000100000 11000 0 0111234667777774311 11111111
Q ss_pred -ccccc------ccc-----cccc-----hhhhc-----cccceeeccccccC-chhHHHHHHhhcccCCcCCCCCCceE
Q psy9410 200 -WCIYP------MYD-----YAHP-----ISDAI-----ENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQY 256 (736)
Q Consensus 200 -w~i~P------tY~-----fa~~-----vdD~~-----~githvirg~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~~ 256 (736)
-.+|+ .|- ++.. .+++. ..+.|++ |.|..- |+-.+.+++.+.|+ ..|+++
T Consensus 245 ~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~wpa~l~a~g~------~lP~~v 317 (673)
T PRK00133 245 GKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFI-GKDIIYFHTLFWPAMLEGAGY------RLPTNV 317 (673)
T ss_pred CeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEE-eecchhHHHHHHHHHHHhCCC------CCCCEE
Confidence 12222 221 1100 11111 1123554 544332 44455677777887 567655
Q ss_pred -EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCccc-CCccccHHHHHH
Q psy9410 257 -EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSK-SDSWINIEILEQ 329 (736)
Q Consensus 257 -~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~-~~~~~~~~~l~~ 329 (736)
-.+++.++|.|||||+++.+ +..++.++ |.++++|.|++..+... .+.+|+|+.+..
T Consensus 318 ~~hg~v~~~G~KMSKS~GNvV---------------~p~dlie~-ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~ 376 (673)
T PRK00133 318 FAHGFLTVEGAKMSKSRGTFI---------------WARTYLDH-LDPDYLRYYLAAKLPETIDDLDFNWEDFQQ 376 (673)
T ss_pred eeeccEEecCCcccccCCccc---------------CHHHHHHH-cCchHHHHHHHhcCCCCCCCCCCCHHHHHH
Confidence 56778889999999998754 78888888 99999999999888776 788899988754
No 62
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.8e-13 Score=151.54 Aligned_cols=237 Identities=19% Similarity=0.101 Sum_probs=139.6
Q ss_pred CCcE-EEE-CCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccc--cHHHHHHHHHH---HHHcCCCCC-CCC
Q psy9410 17 PQVI-TRF-APEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKE--NKEYVNSIIKT---IKWLNFNWD-KVK 88 (736)
Q Consensus 17 ~~~v-~Rf-aP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~--~~~~~~~i~~d---l~wLGi~~d-~gp 88 (736)
|.+| +=| +|||||+|||||+|++++++.+|| +|++-+.|..|+ ..++..+|-.- +...|-... ..
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLar------il~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~- 188 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLAR------ILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLT- 188 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHH------HHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCC-
Confidence 3466 554 599999999999999999999999 888888887776 56666666433 222233221 10
Q ss_pred CccccccccHHHHHHHHHHHHHcCCCccc-CCCHHH---------------------HHHhhcCCCCCC--------CCC
Q psy9410 89 KRIYYASDYFDILYKIAEYLIISGDAYVD-SQNTEE---------------------IYINRGNLHEPG--------RNS 138 (736)
Q Consensus 89 ~~~~~~Se~~~~~~~~a~~Li~~g~aY~c-~~~~e~---------------------l~~~r~~~~~~g--------~~~ 138 (736)
+.-.....+.|.+..+.|.+.... . .-..+. +...+......| ..+
T Consensus 189 --~~~~~~lg~~y~~i~~~~~~~~~~--~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e 264 (577)
T COG0018 189 --PEPDGYLGEYYVKIAKDLEEDPGN--DEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGE 264 (577)
T ss_pred --CCcchHHHHHHHHHHHHHHhCccc--chHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccch
Confidence 101111222355555666554432 0 001111 111111111111 112
Q ss_pred CCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcccccccc---ccccchhhh
Q psy9410 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDA 215 (736)
Q Consensus 139 ~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~ 215 (736)
.+++...++.++.+++.......+|+.++...-.. ..++..|.||.|+||+ ++| |+|...+-+
T Consensus 265 ~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KSDGt------------~lY~t~DIAy~~~K~ 330 (577)
T COG0018 265 SFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKSDGT------------YLYFTRDIAYHLYKF 330 (577)
T ss_pred hhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEcCCC------------eeeehhHHHHHHHHH
Confidence 23444455555555444333445777765532111 5667789999999997 555 566666655
Q ss_pred ccccceee--ccccccCchhHHHHHHhhcccCCcCCCCCCc-eE--EEEeeec--CCeecchhhhhhhhhccccCCCCCC
Q psy9410 216 IENITHSI--CTLEFQDHRPFYEWILNKIDKTNFIKRPFPK-QY--EFSRLNL--THTITSKRKLLKLLEKKIVDGWDDP 288 (736)
Q Consensus 216 ~~githvi--rg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~-~~--~f~~l~~--~g~klSKr~~~~~v~~~~~~gwddp 288 (736)
..|.+.+| -|.||..|..+...++..+|+ ..+. +. +...|.. +|.|||||.|+..
T Consensus 331 ~~~~d~~IyV~gadq~~~~~ql~~~l~~~g~------~~~~~~~~h~~~~l~~~~~g~kmStR~G~~v------------ 392 (577)
T COG0018 331 ERGFDKLIYVLGADQHGHFKQLKAVLELLGY------GPDKEVLLHQGVGLVRGGEGVKMSTRAGNVV------------ 392 (577)
T ss_pred hcCCCEEEEEeCCcchhHHHHHHHHHHHhcC------CCccceEEEEEEeeeECCCCccccccCCceE------------
Confidence 56667665 599999999999999999997 3332 11 2333333 4668999998654
Q ss_pred CcccHHHHHHc
Q psy9410 289 RMPTLIGMRRR 299 (736)
Q Consensus 289 r~~tl~~l~~~ 299 (736)
||+++++.
T Consensus 393 ---tl~dllde 400 (577)
T COG0018 393 ---TLDDLLDE 400 (577)
T ss_pred ---EHHHHHHH
Confidence 88887764
No 63
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.41 E-value=1.8e-12 Score=153.85 Aligned_cols=288 Identities=15% Similarity=0.095 Sum_probs=162.5
Q ss_pred EEECCCCCCcCchhHHHH-HHHHHHHHHhc--CCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcC
Q psy9410 21 TRFAPEPNGYLHIGHAKS-IFINFELAYKY--NGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLN 81 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~-al~n~~~Ar~~--~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLG 81 (736)
|==.|+|||.+||||+++ .+..+.+||.+ .|.=++-+..|| |+.....+.+.+.+.+++||
T Consensus 22 Tt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~ 101 (801)
T PLN02610 22 TSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFD 101 (801)
T ss_pred eCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 444599999999999996 57789999853 476677777776 33345677788889999999
Q ss_pred CCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc-----CCCHHHHH----HhhcCCCC--------CCC------
Q psy9410 82 FNWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD-----SQNTEEIY----INRGNLHE--------PGR------ 136 (736)
Q Consensus 82 i~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~----~~r~~~~~--------~g~------ 136 (736)
|.+|. .++++ +|....+++..+|.++|+.|.- +|..++.- ...+.... .|.
T Consensus 102 i~~D~----f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg 177 (801)
T PLN02610 102 ISFDK----FGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCG 177 (801)
T ss_pred Ccccc----CccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhcc
Confidence 99997 33343 4555667777899999999932 34332210 01111000 000
Q ss_pred ---------CCCC--CCCChh----h----hHHHHHHhhCCcccCC--ceEEEEEe-ec--cCCCCCCCCcEEEEecc--
Q psy9410 137 ---------NSPF--YNRLPS----E----SLNLFRRMRSGEFKDG--AHVLRVKI-NM--KSKNINMRDPIIYRIRH-- 190 (736)
Q Consensus 137 ---------~~~~--r~~~~~----~----~~~~~~~m~~g~~~~~--~~~~R~k~-~~--~~~~~~~~D~Vl~R~~~-- 190 (736)
+..| -..+++ + .+..|+......+.+. .+.+|-.. .+ ..-...++|..|-|...
T Consensus 178 ~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WG 257 (801)
T PLN02610 178 KLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWG 257 (801)
T ss_pred ccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecCCc
Confidence 0000 001111 0 0111111111111111 01111110 00 11224567887777321
Q ss_pred CCccccCCc-ccccc------cc-----ccccchhhhcc-----ccceeecccccc-CchhHHHHHHhhcccCCcCCCCC
Q psy9410 191 VNHYRTNNN-WCIYP------MY-----DYAHPISDAIE-----NITHSICTLEFQ-DHRPFYEWILNKIDKTNFIKRPF 252 (736)
Q Consensus 191 ~~h~~~~~~-w~i~P------tY-----~fa~~vdD~~~-----githvirg~e~~-~~~~~~~~l~~~l~~~~~~~~~~ 252 (736)
.+-|..|.+ -.+|. .| .|+....++.. .+.|+| |.|.. -|+-.+.+++.+.|.. -..
T Consensus 258 ipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfi-GKDi~~fH~i~wPa~L~a~g~~----~~~ 332 (801)
T PLN02610 258 VPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFM-GKDNVPFHTVMFPSTLLGTGEN----WTM 332 (801)
T ss_pred ccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEE-eeecchhHHHHHHHHHHhCCCC----cCC
Confidence 111111101 11111 11 01111111221 124666 55543 3667778888888740 035
Q ss_pred CceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 253 PKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 253 p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+++ -.++++++|.|||||+++.+ ...++.+++|.++++|.||+..+....|.+|+|+.|.+.+
T Consensus 333 p~~i~~~g~l~~eG~KMSKS~GNvV---------------~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~ 397 (801)
T PLN02610 333 MKTISVTEYLNYEGGKFSKSKGVGV---------------FGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKL 397 (801)
T ss_pred CCEEEeccCEecCCceecCcCCccc---------------CHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHH
Confidence 6665 45568999999999998644 6778888889999999999999888889999998887765
Q ss_pred h
Q psy9410 332 R 332 (736)
Q Consensus 332 ~ 332 (736)
+
T Consensus 398 N 398 (801)
T PLN02610 398 N 398 (801)
T ss_pred H
Confidence 5
No 64
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.41 E-value=2.8e-12 Score=148.88 Aligned_cols=278 Identities=13% Similarity=0.067 Sum_probs=156.7
Q ss_pred CCCCCCcCchhHHHHH-HHHHHHHHh-----cCCEEEEEeeCCCcc-------------cccHHHHHHHHHHHHHcCCCC
Q psy9410 24 APEPNGYLHIGHAKSI-FINFELAYK-----YNGLCNLRFDDTNPL-------------KENKEYVNSIIKTIKWLNFNW 84 (736)
Q Consensus 24 aP~PtG~lHiGhar~a-l~n~~~Ar~-----~~G~~ilR~eDtd~~-------------r~~~~~~~~i~~dl~wLGi~~ 84 (736)
+|+|||.+||||+++. ++.+.++|. ++..|+..+||.+.. ....++.+.|.++++.||+.+
T Consensus 11 ~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~ 90 (556)
T PRK12268 11 WPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISY 90 (556)
T ss_pred CCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcC
Confidence 4899999999999998 988888873 334555555665422 234688899999999999999
Q ss_pred CCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCC----CChhhhH---H
Q psy9410 85 DKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYN----RLPSESL---N 150 (736)
Q Consensus 85 d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~----~~~~~~~---~ 150 (736)
|. .++++ +|.+..+++.++|.++|++|.- +|+..+.--..... .|....|.. .+.-|.- -
T Consensus 91 d~----~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v--~g~cp~c~~~~~~G~~ce~cg~~~ 164 (556)
T PRK12268 91 DL----FTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYV--EGTCPYCGYEGARGDQCDNCGALL 164 (556)
T ss_pred CC----CcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccce--eccCCCCCCcccCCchhhhccccC
Confidence 87 56667 8899999999999999999933 45443211000000 010000110 0000000 0
Q ss_pred HHHHhhCCcc----------cCCceEEEEEe------------e---------c-cCCCCCCCCcEEEEeccCCcccc--
Q psy9410 151 LFRRMRSGEF----------KDGAHVLRVKI------------N---------M-KSKNINMRDPIIYRIRHVNHYRT-- 196 (736)
Q Consensus 151 ~~~~m~~g~~----------~~~~~~~R~k~------------~---------~-~~~~~~~~D~Vl~R~~~~~h~~~-- 196 (736)
....+..+.. ......+++.- . + ..-...++|+.|=|...=++|..
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~ 244 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWP 244 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCC
Confidence 0000111000 00011111100 0 0 00122567888888654223221
Q ss_pred CCc-cccccccc-----ccc------------chhhhc--ccc--ceeeccccccC-chhHHHHHHhhcc--cCCcCCCC
Q psy9410 197 NNN-WCIYPMYD-----YAH------------PISDAI--ENI--THSICTLEFQD-HRPFYEWILNKID--KTNFIKRP 251 (736)
Q Consensus 197 ~~~-w~i~PtY~-----fa~------------~vdD~~--~gi--thvirg~e~~~-~~~~~~~l~~~l~--~~~~~~~~ 251 (736)
+++ -.+|+-++ ++. .+++.. -+. -|++ |.|... |...+..++.+.+ + .
T Consensus 245 ~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~-G~D~~~Fh~~~~p~~l~~~~~~~------~ 317 (556)
T PRK12268 245 GFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFI-GKDNIPFHSIIWPAMLLGSGEPL------K 317 (556)
T ss_pred CCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEE-eeccCcchHHHHHHHHHhcCCCC------C
Confidence 111 12232111 010 111222 122 2333 544332 4444555555555 3 3
Q ss_pred CCc-eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 252 FPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 252 ~p~-~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
.|. .+..+|+.++|.|||||+++.+ ++.++.++ |.++|+|.|++..+....+.+|+++.+...
T Consensus 318 ~P~~v~~~G~v~~~G~KMSKS~GN~I---------------~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~~ 381 (556)
T PRK12268 318 LPDEIVSSEYLTLEGGKFSKSRGWGI---------------WVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVRR 381 (556)
T ss_pred CCCEeeccCCEEECCeeeccCCCccc---------------CHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 453 3367778889999999998754 78888888 999999999998887777888999887654
No 65
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.41 E-value=2.9e-13 Score=128.65 Aligned_cols=133 Identities=23% Similarity=0.214 Sum_probs=102.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhc-----CCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKY-----NGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~-----~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
+.++|+|||++||||+|++++.+.++|.+ ++.++..++|.+.....+.... |..|.+ +..
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~~~------~~~ 66 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENAKA------FVE 66 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCHHH------HHH
Confidence 67899999999999999999999999864 8999999999997555433222 444443 222
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
.+.+.+.+..+
T Consensus 67 ~~~~~~~~~~~--------------------------------------------------------------------- 77 (143)
T cd00802 67 RWIERIKEDVE--------------------------------------------------------------------- 77 (143)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 22111111111
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhcccc---ceeeccccccCchhHHHHHHhhcccCCcCCCCC
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENI---THSICTLEFQDHRPFYEWILNKIDKTNFIKRPF 252 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~gi---thvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~ 252 (736)
|++.+++++...++ |+.++|.|+..|...+.++.+++++ ...
T Consensus 78 ------------------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----~~~ 122 (143)
T cd00802 78 ------------------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----PAR 122 (143)
T ss_pred ------------------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----CCC
Confidence 88999999999999 9999999999999999999999985 135
Q ss_pred CceEEEEeeecC-Ceecchhh
Q psy9410 253 PKQYEFSRLNLT-HTITSKRK 272 (736)
Q Consensus 253 p~~~~f~~l~~~-g~klSKr~ 272 (736)
|..++|+.|+.. |.|||||+
T Consensus 123 p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 123 PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred ceEEEeCCeECCCCCcCCCCC
Confidence 888899999884 58999985
No 66
>PLN02286 arginine-tRNA ligase
Probab=99.34 E-value=8.1e-12 Score=144.08 Aligned_cols=92 Identities=13% Similarity=-0.052 Sum_probs=62.4
Q ss_pred CCcEEEEeccCCccccCCcccccccc---ccccchhhhcc-ccceee--ccccccCchhHHHHHHhhcccCCcCCCCCCc
Q psy9410 181 RDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIE-NITHSI--CTLEFQDHRPFYEWILNKIDKTNFIKRPFPK 254 (736)
Q Consensus 181 ~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~~~-githvi--rg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~ 254 (736)
.|.||.|+||+ +|| |+|....-+.. +.+++| -|.++..|-.+...+++++|+........-.
T Consensus 297 ~~~vl~ksDGt------------~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~ 364 (576)
T PLN02286 297 IPLIVVKSDGG------------FNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLE 364 (576)
T ss_pred CceEEEECCCc------------hhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceE
Confidence 58899999997 676 56666655544 466664 4889999999999999999972000000112
Q ss_pred eEEEEeee-cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHc
Q psy9410 255 QYEFSRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRR 299 (736)
Q Consensus 255 ~~~f~~l~-~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~ 299 (736)
++.|+.+. .+|++||||+|+.+ ||.+|++.
T Consensus 365 h~~~g~V~~~~g~kmStR~G~~v---------------~L~dllde 395 (576)
T PLN02286 365 HVGFGLVLGEDGKRFRTRSGEVV---------------RLVDLLDE 395 (576)
T ss_pred EEeeccEECCCCCcccCCCCCee---------------EHHHHHHH
Confidence 23455554 57889999998654 78888774
No 67
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.33 E-value=3e-12 Score=138.91 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeC----CCc--------------------------ccccHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDD----TNP--------------------------LKENKE 68 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eD----td~--------------------------~r~~~~ 68 (736)
||+|||.+||||||+.++.+.++|. +...|+..+|| ++. +....+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 5999999999999999999998883 45566767776 321 122346
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCccccccccHHHHHHHHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLNF--NWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLGi--~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c 117 (736)
+.+.|.++|+.||+ +|+. +..+..++|.+...++.++|+++|++|.-
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~--~~~T~~~~~~~~v~~~f~~L~~~G~iY~~ 137 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWEN--PYKTMDPEYMESVWWVFKQLHEKGLLYRG 137 (338)
T ss_pred HHHHHHHHHHHhCceecCCC--CeECCCHHHHHHHHHHHHHHHHCCCEecc
Confidence 77899999999999 6664 13344568999999999999999999953
No 68
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=99.32 E-value=8.6e-13 Score=136.99 Aligned_cols=88 Identities=24% Similarity=0.640 Sum_probs=73.7
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
-|.+..|.+|+.|.|+ .+||+++.. .....+.+.+|.++|++|+.|
T Consensus 125 ~y~p~~C~hC~nP~Cv-------------~aCPtgAI~---------------------k~eedGiV~ID~ekCiGCg~C 170 (321)
T TIGR03478 125 FYLPRICNHCTNPACL-------------AACPTGAIY---------------------KREEDGIVLVDQERCKGYRYC 170 (321)
T ss_pred EEecccCCCCCCccch-------------hhCCcCcEE---------------------EecCCCeEEECHHHCcchHHH
Confidence 4788999999999998 899998753 111235678999999999999
Q ss_pred HhhCcccccccccccceeecccCccCc---------cchhhcCccCceeecccC
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~C---------g~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+||++|+.++... ....+|++| +.|+.+||++|+.|.+.+
T Consensus 171 v~ACPygAi~~n~~~---~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdld 221 (321)
T TIGR03478 171 VEACPYKKVYFNPQS---QKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYLD 221 (321)
T ss_pred HHhCCCCCcEecCCC---CchhhCCCchhhhccCCCCHHHhhcCcccEEEEeCC
Confidence 999999999876542 456799999 899999999999998765
No 69
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.31 E-value=1.2e-12 Score=144.12 Aligned_cols=274 Identities=20% Similarity=0.176 Sum_probs=147.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
.|.|||.|||||+.+.+..+.+||. ..|.=++-+..|| |+....++.+.|.+.++.|||++|
T Consensus 7 ~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 7 IPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD 86 (391)
T ss_dssp EEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4899999999999999999999985 3476677777776 444557888999999999999999
Q ss_pred CCCCccccc--cccHHHHHHHHHHHHHcCCCccc-----CCCHHHH--HH--hhcCCC------CCCCCC-CCCC-CChh
Q psy9410 86 KVKKRIYYA--SDYFDILYKIAEYLIISGDAYVD-----SQNTEEI--YI--NRGNLH------EPGRNS-PFYN-RLPS 146 (736)
Q Consensus 86 ~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l--~~--~r~~~~------~~g~~~-~~r~-~~~~ 146 (736)
. ..++ ++|.+...++.++|.++|..|.- +|..++- .+ ..+... ..|..| .|-. ..++
T Consensus 87 ~----F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~ 162 (391)
T PF09334_consen 87 R----FIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPE 162 (391)
T ss_dssp E----EEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECC
T ss_pred c----eeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcccc
Confidence 7 3333 35556667788999999999932 2322211 00 001000 000000 0000 0000
Q ss_pred hhHHHHHHhhCCc--ccCCceEEE------EEeec-------------------------cCCCCCCCCcEEEEeccCCc
Q psy9410 147 ESLNLFRRMRSGE--FKDGAHVLR------VKINM-------------------------KSKNINMRDPIIYRIRHVNH 193 (736)
Q Consensus 147 ~~~~~~~~m~~g~--~~~~~~~~R------~k~~~-------------------------~~~~~~~~D~Vl~R~~~~~h 193 (736)
+ +.+.. ..+....+| ++++. ..-+..+.|.-|-|..
T Consensus 163 ~-------l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~---- 231 (391)
T PF09334_consen 163 E-------LINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPL---- 231 (391)
T ss_dssp C-------SECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTT----
T ss_pred c-------ccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCC----
Confidence 0 00000 000011111 11110 0001234555544211
Q ss_pred cccCCcc-----c-ccc------ccc--cccch--------------hhhccccceeecccccc-CchhHHHHHHhhccc
Q psy9410 194 YRTNNNW-----C-IYP------MYD--YAHPI--------------SDAIENITHSICTLEFQ-DHRPFYEWILNKIDK 244 (736)
Q Consensus 194 ~~~~~~w-----~-i~P------tY~--fa~~v--------------dD~~~githvirg~e~~-~~~~~~~~l~~~l~~ 244 (736)
.||=++ . +|. .|- ..... +|....+.|+| |.|.. -|+..+.+++.++|+
T Consensus 232 -~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~ 309 (391)
T PF09334_consen 232 -DWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGL 309 (391)
T ss_dssp -SSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB
T ss_pred -CCcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEE-ccchhHHHHHHhHHHHhcccC
Confidence 122211 1 111 110 00011 11223356776 55543 366677788888888
Q ss_pred CCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCcccc
Q psy9410 245 TNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWIN 323 (736)
Q Consensus 245 ~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~ 323 (736)
..|..+ -.+++.++|.|||||+++.+ ...++.++ |.++++|.||+..+....+.+|+
T Consensus 310 ------~lP~~i~~~~~~~~~g~K~SkS~gn~i---------------~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~ 367 (391)
T PF09334_consen 310 ------PLPRRIVVHGFLTLDGEKMSKSRGNVI---------------WPDDLLEE-YGADALRYYLAREGPEGQDSDFS 367 (391)
T ss_dssp ---------SEEEEE--EEETTCCEETTTTESS---------------BHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-
T ss_pred ------CCCCEEEeeeeEEECCeeccccCCccc---------------CHHHHHHh-CChHHHHHHHHHhcCCCCCCCCC
Confidence 667655 45678999999999997644 67888888 99999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q psy9410 324 IEILEQALRDDLD 336 (736)
Q Consensus 324 ~~~l~~~~~~~l~ 336 (736)
++.+.+.++.+|-
T Consensus 368 ~~~~~~~~n~~L~ 380 (391)
T PF09334_consen 368 WEDFIERVNNELA 380 (391)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776653
No 70
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.31 E-value=1e-11 Score=133.57 Aligned_cols=89 Identities=26% Similarity=0.306 Sum_probs=66.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCccc-------------ccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLK-------------ENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r-------------~~~~~~~~i~~dl~wLGi~~d 85 (736)
+|+|||.+||||+|+.++.+.++|. +...|+..+||.+... ....+.+.+.++|+.||+..|
T Consensus 8 ~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 8 FPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 4999999999999999999998883 5567888888886333 247888999999999999877
Q ss_pred CCCCccccccccHHHHHHHH----HHHHHcCCCcc
Q psy9410 86 KVKKRIYYASDYFDILYKIA----EYLIISGDAYV 116 (736)
Q Consensus 86 ~gp~~~~~~Se~~~~~~~~a----~~Li~~g~aY~ 116 (736)
- ..+.+...+.+.+.+ .+|.++|++|.
T Consensus 88 ~----~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~ 118 (314)
T cd00812 88 W----RREFTTCDPEYYKFTQWLFLKLYEKGLAYK 118 (314)
T ss_pred c----ccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 3 112222234444444 59999999993
No 71
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=99.29 E-value=1.4e-12 Score=140.26 Aligned_cols=121 Identities=21% Similarity=0.397 Sum_probs=83.3
Q ss_pred CCccccccCCCceeeEEEEecccccccCcccccccc--ccccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHH
Q psy9410 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFE--QNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGI 574 (736)
Q Consensus 497 ~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~e--r~g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l 574 (736)
+.+|.+++..... .+..+|++..+......+++ ...|.+..|.||+.|.|+ .+||+++..
T Consensus 140 gpNwdddl~g~~~---~~~~d~~~~~~~~~~~g~~p~~~m~y~p~~C~HC~nP~CV-------------~ACPtGAI~-- 201 (492)
T TIGR01660 140 GPNWEDDLGGEFA---KRRKDKNFDKIQKDIYGEFENTFMMYLPRLCEHCLNPACV-------------ASCPSGAIY-- 201 (492)
T ss_pred CCCcccccCCCcc---cccCCccHhHHhHHhcccCCCceEEECCCcCcCCCcccch-------------hhCccCCeE--
Confidence 4566666643222 22345555543222222222 223678899999999999 899998742
Q ss_pred HHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhhCcccccccccccceeecccCccCcc---------chh
Q psy9410 575 IKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCI 645 (736)
Q Consensus 575 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv 645 (736)
.....+.+.+|.++|++|+.|+.+||++|+.++.... ...+|++|. .|+
T Consensus 202 -------------------k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~n~~~g---~~~KCd~C~~Rie~G~pPaCV 259 (492)
T TIGR01660 202 -------------------KREEDGIVLIDQDKCRGWRMCISGCPYKKIYFNWKTG---KSEKCIFCYPRIEAGQPTVCS 259 (492)
T ss_pred -------------------EecCCCeEEEehhhccChHHHHHhCCCCCcEecCCCC---ccccCCCChhHHhCCCCCcch
Confidence 1113456789999999999999999999998865432 346899993 799
Q ss_pred hcCccCceeecc
Q psy9410 646 KKCPVNCISMIE 657 (736)
Q Consensus 646 ~~CP~~Ai~~~~ 657 (736)
++||++|+.|..
T Consensus 260 eaCP~~Ar~fG~ 271 (492)
T TIGR01660 260 ETCVGRIRYLGV 271 (492)
T ss_pred hhcChhhhhhhh
Confidence 999999987764
No 72
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.26 E-value=1.3e-11 Score=134.73 Aligned_cols=104 Identities=17% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcccccccc---ccccchhhh-ccccceee--ccccccCchhHH
Q psy9410 162 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDA-IENITHSI--CTLEFQDHRPFY 235 (736)
Q Consensus 162 ~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~-~~githvi--rg~e~~~~~~~~ 235 (736)
+|+.++++ +..+...|.||.|+||+ +|| |+|....-+ ..+.+.+| -|.++..|-.+.
T Consensus 194 dGa~~i~~-----~~~g~~k~~Vl~ksDGt------------~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l 256 (354)
T PF00750_consen 194 DGALWIDL-----TKFGDDKDRVLRKSDGT------------STYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQL 256 (354)
T ss_dssp TTEEEEEG-----CCTSTSS-EEEEETTSE------------B-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHH
T ss_pred CCcEEEec-----hhcCCCCcceEEcCCCc------------eEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHH
Confidence 56667662 23355678899999996 777 566665544 45556554 488888898888
Q ss_pred HHHHhhcccCCcCCCCCCceEEEEee-ecCCe-ecchhhhhhhhhccccCCCCCCCcccHHHHHHc
Q psy9410 236 EWILNKIDKTNFIKRPFPKQYEFSRL-NLTHT-ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRR 299 (736)
Q Consensus 236 ~~l~~~l~~~~~~~~~~p~~~~f~~l-~~~g~-klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~ 299 (736)
..+++++|+.+.. ..-.++.|+.+ ..+|+ +||+|+|+.+ +|.+|++.
T Consensus 257 ~~~l~~lg~~~~~--~~~~H~~~g~vl~~~gk~~mstR~G~~i---------------~l~dllde 305 (354)
T PF00750_consen 257 FAILEALGYDPEA--VKLQHVSFGVVLLKDGKVKMSTRKGNVI---------------TLDDLLDE 305 (354)
T ss_dssp HHHHHHTT-HHHH--CTEEEEEE-EEEETTBEESS-TTTTSST---------------BHHHHHHH
T ss_pred HHHHHHhCCCCCC--CEEEEEEEEEEEcCCCCccccCCCCCce---------------EHHHHHHH
Confidence 9999999862110 00111234443 45787 8999998655 88888875
No 73
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.26 E-value=2.1e-12 Score=102.47 Aligned_cols=54 Identities=43% Similarity=0.986 Sum_probs=36.1
Q ss_pred eeccccccCcchhHhhCccc---ccccccccceeecccCccCccchhhcCcc-Cceee
Q psy9410 602 IIKENKCIGCTLCIQSCPVD---AIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISM 655 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~---ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~-~Ai~~ 655 (736)
.+|+++||+||+|+.+||.+ ++..+.+....++.+.|++||.|+.+||+ +||+|
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEGKKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTTTSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCCeeEEeccccCcCcCcccccCCCccCCCC
Confidence 58999999999999999974 45455455455678899999999999997 99986
No 74
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=99.24 E-value=2.3e-12 Score=122.16 Aligned_cols=87 Identities=26% Similarity=0.733 Sum_probs=69.0
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
..++.|+||..++|+ ++||+++.. ...+.+.+|+++|||||+|+
T Consensus 48 ~~pv~C~qCedaPC~-------------~vCP~~AI~-----------------------~~~~~v~V~~ekCiGC~~C~ 91 (165)
T COG1142 48 SAPVVCHHCEDAPCA-------------EVCPVGAIT-----------------------RDDGAVQVDEEKCIGCKLCV 91 (165)
T ss_pred ccCCcCCCCCCcchh-------------hhCchhhee-----------------------ecCCceEEchhhccCcchhh
Confidence 678999999999999 999999854 12567899999999999999
Q ss_pred hhCcccccccccccc-eeecccCccCc------cchhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHM-HTIFSKLCTGC------DLCIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~-~~~~~~~C~~C------g~Cv~~CP~~Ai~~~~~ 658 (736)
.+||+|+|.+..... ......+|..| +.|+++||++||.+.+.
T Consensus 92 ~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~ 141 (165)
T COG1142 92 VACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDE 141 (165)
T ss_pred hcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccH
Confidence 999999998764300 00122367766 46999999999998764
No 75
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=99.23 E-value=3.7e-12 Score=122.63 Aligned_cols=65 Identities=29% Similarity=0.664 Sum_probs=55.0
Q ss_pred CCCcccceeccccccCcchhHhhCcccccccccc----------cceeecccCccCccchhhcCccCceeecccC
Q psy9410 595 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 595 ~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~----------~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
...++...++.++||+|+.|+.+||.+||.+... ....++..+|+.||.|+++||++||.+++..
T Consensus 44 ~rfRG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~ 118 (172)
T COG1143 44 PRFRGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEF 118 (172)
T ss_pred CCccceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcce
Confidence 4566888899999999999999999999986422 1345688899999999999999999998765
No 76
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.23 E-value=1e-11 Score=146.63 Aligned_cols=107 Identities=19% Similarity=0.324 Sum_probs=80.0
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccc--cCCCCCcccceeccccccCcchhHhhCcc----ccccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI--YGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIG 625 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~~ 625 (736)
+...+++|+.+|..|+.++.|.||.++..+|+...++... ....+..+.+.+|.++||.|++|+++|+. +++.+
T Consensus 85 le~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~~~~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~ 164 (819)
T PRK08493 85 MQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHKHWGKINYDPSLCIVCERCVTVCKDKIGESALKT 164 (819)
T ss_pred HHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccccccCCCcEEechhhcccccHHHhhCcccccchhhhh
Confidence 4556789999999999999999999999999876655321 11123457899999999999999999996 33332
Q ss_pred ccccce------------------------ee-----cccCccCccchhhcCccCceeeccc
Q psy9410 626 AAKHMH------------------------TI-----FSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 626 ~~~~~~------------------------~~-----~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...+.. .+ ....|+.||.|+++||+|||+..+.
T Consensus 165 ~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv~VCPvGAL~~k~~ 226 (819)
T PRK08493 165 VPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSDF 226 (819)
T ss_pred ccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHHHhCCCCccccCcc
Confidence 211111 01 2468999999999999999987654
No 77
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.22 E-value=3.3e-11 Score=132.97 Aligned_cols=91 Identities=22% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc--------------------------------cccHHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL--------------------------------KENKEY 69 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~--------------------------------r~~~~~ 69 (736)
+|+|||.|||||+++.++.+.+||. ..|.-++.+..+|.. ....++
T Consensus 9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T cd00817 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEES 88 (382)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHH
Confidence 5999999999999999999999984 346555555555531 012457
Q ss_pred HHHHHHHHHHcCCCCC--CCCCccccccccHHHHHHHHHHHHHcCCCcc
Q psy9410 70 VNSIIKTIKWLNFNWD--KVKKRIYYASDYFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d--~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~ 116 (736)
.+.+.++++.||+..| . +..+...++.+....+..+|.++|++|.
T Consensus 89 ~~~~~~~~~~lgi~~Dw~~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 89 GGKIREQLKRLGASVDWSR--EYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHhCceeecCC--CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999998654 5 1233444455666677799999999995
No 78
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=99.19 E-value=8.1e-12 Score=128.52 Aligned_cols=86 Identities=24% Similarity=0.653 Sum_probs=70.7
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
|.+..|.+|+.|+|+ .+||+++.. ....+.+.+|.++|++|+.|+
T Consensus 95 ~~~~~C~~C~~p~Cv-------------~~CP~~Ai~----------------------~~~~G~v~id~~~CigC~~Cv 139 (244)
T PRK14993 95 LLPRLCNHCDNPPCV-------------PVCPVQATF----------------------QREDGIVVVDNKRCVGCAYCV 139 (244)
T ss_pred ecchhcCCcCCccCc-------------cccCCCCEE----------------------ECCCCCEEEcHHHCCCHHHHH
Confidence 457899999999998 899988642 112356789999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc---------chhhcCccCceeecccC
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 659 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~~~ 659 (736)
.+||++|+.++... ....+|++|+ .|+.+||++||.+.+..
T Consensus 140 ~aCP~~Ai~~~~~~---~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~ 189 (244)
T PRK14993 140 QACPYDARFINHET---QTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIK 189 (244)
T ss_pred HhcCCCCCEEeCCC---CCcccCcCCcchhhCCCCcccchhcccCCEEEcccc
Confidence 99999999876542 3457999997 89999999999997654
No 79
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=99.18 E-value=1.2e-11 Score=126.17 Aligned_cols=87 Identities=23% Similarity=0.660 Sum_probs=69.8
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
|.+..|.+|+.++|+ .+||+++.. .....+.+.+|.++|++|+.|+
T Consensus 89 ~~~~~C~~C~~~~Cv-------------~~CP~gAi~---------------------~~~~~g~v~id~~~C~~C~~C~ 134 (225)
T TIGR03149 89 FFRKSCQHCDNAPCV-------------AVCPTGASF---------------------KDEETGIVDVHKDLCVGCQYCI 134 (225)
T ss_pred ECchhccCCcCcChH-------------hhCCCCcEE---------------------EeCCCCeEEechhhCCcchHHH
Confidence 567899999999999 899998743 0112345778999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc----------chhhcCccCceeecccC
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD----------LCIKKCPVNCISMIEVT 659 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg----------~Cv~~CP~~Ai~~~~~~ 659 (736)
.+||++|+..+.. ..+..+|++|+ .|+++||++||.|.+..
T Consensus 135 ~aCP~~A~~~~~~---~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 135 AACPYRVRFIHPV---TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred HhCCCCCcEecCC---CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 9999999876532 12457999998 79999999999998653
No 80
>PRK09898 hypothetical protein; Provisional
Probab=99.15 E-value=1.5e-11 Score=124.25 Aligned_cols=86 Identities=28% Similarity=0.718 Sum_probs=69.1
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
|.+..|.+|+.|.|+ .+||+++... ....+.+.+|.++|++|+.|+
T Consensus 118 ~~~~~C~~C~~~~C~-------------~~CP~gAi~~---------------------~~~~g~v~vd~~~CigC~~C~ 163 (208)
T PRK09898 118 YTADTCRQCKEPQCM-------------NVCPIGAITW---------------------QQKEGCITVDHKRCIGCSACT 163 (208)
T ss_pred EeCccCCCccCcchh-------------hhCCcceEEe---------------------eccCCeEEeccccCCCcCccc
Confidence 456799999999998 8999887420 111245788999999999999
Q ss_pred hhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+||++++.++... .+..+|++||.|+++||++||.+.+.
T Consensus 164 ~aCP~~ai~~~~~~---~~~~kC~~Cg~Cv~~CP~~Ai~~~~~ 203 (208)
T PRK09898 164 TACPWMMATVNTES---KKSSKCVLCGECANACPTGALKIIEW 203 (208)
T ss_pred ccCCCCCCEecCCC---CcCCcCcChHHHHHhCCcccEEEecH
Confidence 99999999875432 24578999999999999999998754
No 81
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.15 E-value=4.5e-11 Score=122.93 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=79.9
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccC---CCCCcccceeccccccCcchhHhhCcc--cccccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG---NEKSRCCAIIKENKCIGCTLCIQSCPV--DAIIGA 626 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~d~~~Ci~Cg~C~~~CP~--~ai~~~ 626 (736)
+...+++|+.+|..|+.++.|.|+.++..+|+....+...+. .+.+++.+.+|.++|++|++|+.+||. +++...
T Consensus 89 l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~ 168 (234)
T PRK07569 89 VELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDEIEGAHTWD 168 (234)
T ss_pred HHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHHhcCCceee
Confidence 456677999999999999999999999999987555433222 234567889999999999999999994 332221
Q ss_pred --ccc--cee--------ecccCccCccchhhcCccCceeeccc
Q psy9410 627 --AKH--MHT--------IFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 627 --~~~--~~~--------~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+ ... .+...|++||.|+.+||++||.....
T Consensus 169 ~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 169 VAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred ecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 111 111 12358999999999999999987654
No 82
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.15 E-value=2.3e-11 Score=135.95 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=83.3
Q ss_pred HHHHHHcCcccCccCCCC-hhHHHHHHHHhcCcCCccCcc-----ccCCCCCcccceeccccccCcchhHhhCcc----c
Q psy9410 552 YAEAIANKKANYNQCPTG-GRKGIIKLAKYLNKPIIPLNT-----IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----D 621 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~-~~~~l~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ 621 (736)
+...|++|+..|.+|+.+ +.|.+++.+..+|.....+.. .+..+.+.+...+|.++||.||+||++|-. -
T Consensus 89 md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~e 168 (978)
T COG3383 89 MDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVNE 168 (978)
T ss_pred HHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhcee
Confidence 466788999999999999 999999999999987665432 344567789999999999999999999984 2
Q ss_pred cccccccc---------ceeecccCccCccchhhcCccCceeec
Q psy9410 622 AIIGAAKH---------MHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 622 ai~~~~~~---------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
++.+++.+ ...+....|..||+|+.|||++|+.-.
T Consensus 169 aL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek 212 (978)
T COG3383 169 ALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEK 212 (978)
T ss_pred EEEeecccCCcceecCCCCccccccccccCccceecchhhhhhh
Confidence 34443322 123456789999999999999998543
No 83
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.14 E-value=2.7e-09 Score=115.14 Aligned_cols=244 Identities=16% Similarity=0.160 Sum_probs=146.2
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcccc------------------------------
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLKE------------------------------ 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r~------------------------------ 65 (736)
+--+++|||.+||||++..+..+.++|. +...|+.-.||-|+-|.
T Consensus 23 v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~~~ 102 (353)
T cd00674 23 VASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCESY 102 (353)
T ss_pred EecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCHHH
Confidence 5557889999999999999998888873 56788888888875332
Q ss_pred cHHHHHHHHHHHHHcCCCCCCCCCccccccccHH-HHHHHH-HHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 66 NKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD-ILYKIA-EYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~-~~~~~a-~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
...+.+.+.+.|+.|||+++- ...+..|.. .|.+.+ ..|.+++.+. +.|...++.....++ +|+--.
T Consensus 103 ~d~~~~~f~~~l~~lgi~~d~----~~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~-~P~~p~ 171 (353)
T cd00674 103 AEHFERPFEESLEKLGIEVEF----ISQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETW-YPFMPY 171 (353)
T ss_pred HHHHHHHHHHHHHHcCCeeee----eecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCc-eeeeee
Confidence 346678888999999999874 322222222 344444 3444455443 344444432111111 111111
Q ss_pred ChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCcc-----cc---CCcccc-ccccccccchhh
Q psy9410 144 LPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHY-----RT---NNNWCI-YPMYDYAHPISD 214 (736)
Q Consensus 144 ~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~-----~~---~~~w~i-~PtY~fa~~vdD 214 (736)
+.+ -|.. ...++ ..+. . .-.|-|+.. ..|- +. -=+|++ ||+= =
T Consensus 172 c~~----------cg~~--~~~v~--~~d~--~----~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~r-------W 223 (353)
T cd00674 172 CEK----------CGKD--TTTVE--AYDA--K----AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMR-------W 223 (353)
T ss_pred cCC----------cCcc--eeEEE--EEeC--C----CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhh-------h
Confidence 100 0100 00110 0110 0 012444432 1121 11 123444 4431 1
Q ss_pred hccccceeeccccccCc---hhHHHHHHh-hcccCCcCCCCCCceEEEEeeecCCe-ecchhhhhhhhhccccCCCCCCC
Q psy9410 215 AIENITHSICTLEFQDH---RPFYEWILN-KIDKTNFIKRPFPKQYEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPR 289 (736)
Q Consensus 215 ~~~githvirg~e~~~~---~~~~~~l~~-~l~~~~~~~~~~p~~~~f~~l~~~g~-klSKr~~~~~v~~~~~~gwddpr 289 (736)
...||+.-+-|.||..+ ......+.+ .||. ..|.++.|+.+.+.|. |||||+++.+
T Consensus 224 ~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~------~~P~~~~ye~V~l~gg~KMSKSkGnvI------------- 284 (353)
T cd00674 224 AILGVDFEPFGKDHASAGGSYDTGKEIAREIFGG------EPPVPVMYEFIGLKGGGKMSSSKGNVI------------- 284 (353)
T ss_pred hhcCCCEEeeCccccccccHHHHHHHHHHHHhCC------CCCeEEEeeeEEeCCCCccCCCCCCcC-------------
Confidence 24567777889898877 777788888 8987 5677777777878776 9999998755
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHH
Q psy9410 290 MPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE 325 (736)
Q Consensus 290 ~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~ 325 (736)
++.++++. +.|++||.|++...-...+..|+++
T Consensus 285 --~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 285 --TPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred --CHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChh
Confidence 89999988 9999999888877733445566664
No 84
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=99.13 E-value=2e-11 Score=127.62 Aligned_cols=86 Identities=31% Similarity=0.668 Sum_probs=68.7
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCC-ChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPT-GGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
|.+..|.||+.|+|+ .+||+ ++.. ....+.+.+|.++|++|+.|
T Consensus 88 ~~~~~C~hC~~p~Cv-------------~aCP~~gA~~----------------------~~~~G~V~id~dkCigC~~C 132 (283)
T TIGR01582 88 IRKDGCMHCREPGCL-------------KACPAPGAII----------------------QYQNGIVDFDHSKCIGCGYC 132 (283)
T ss_pred ECCccCCCCCCcccc-------------CCCCcCCeEE----------------------EcCCCcEEEeHHHCCcchHH
Confidence 567889999999999 99997 4321 11345678999999999999
Q ss_pred HhhCcccccccccccceeecccCccCc---------cchhhcCccCceeecccC
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~C---------g~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+||++++.++... ....+|+.| +.|+.+||++||.+....
T Consensus 133 v~aCP~~a~~~~~~~---~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~ 183 (283)
T TIGR01582 133 IVGCPFNIPRYDKVD---NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKE 183 (283)
T ss_pred HhhCCCCCcEEcCCC---CChhhhcccccccccCCCChHhCcccHhhEEECCHH
Confidence 999999999876432 123589998 489999999999998653
No 85
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=99.13 E-value=2.1e-11 Score=129.89 Aligned_cols=88 Identities=20% Similarity=0.543 Sum_probs=71.0
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
|.+..|.+|+.|.|+ .+||.++.. .....+.+.+|.++|++|+.|+
T Consensus 107 ~~~~~C~hC~~p~Cv-------------~aCP~gAi~---------------------k~~~~g~V~id~dkCigCg~Cv 152 (328)
T PRK10882 107 YIKKQCMHCVDPNCV-------------SVCPVSALT---------------------KDPKTGIVHYDKDVCTGCRYCM 152 (328)
T ss_pred cccccCCCcCchhhH-------------hhCCCCCEE---------------------ecccCCcccCCHHHcCcccHHH
Confidence 567899999999998 899998753 0112356788999999999999
Q ss_pred hhCcccccccccccceeecccCccCccc-------------hhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCDL-------------CIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg~-------------Cv~~CP~~Ai~~~~~ 658 (736)
.+||+++|.++.+. ......+|+.|+. |+.+||++||.+.+.
T Consensus 153 ~aCP~gai~~~~~~-~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~ 207 (328)
T PRK10882 153 VACPFNVPKYDYNN-PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTR 207 (328)
T ss_pred HhCCccceeccccc-cccceeecccccccchhhhhcCCCChhhhhccccceEeccH
Confidence 99999999876432 1234578999998 999999999998764
No 86
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=1.1e-09 Score=124.56 Aligned_cols=243 Identities=14% Similarity=0.145 Sum_probs=147.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcccc------------------------------
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLKE------------------------------ 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r~------------------------------ 65 (736)
+--+.+|||.+||||++..+..+.++|. +...||.=-||.|+-|.
T Consensus 27 ~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~~ 106 (510)
T PRK00750 27 VETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCHE 106 (510)
T ss_pred EEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCch
Confidence 7777899999999999999998888874 45677777788875222
Q ss_pred --cHHHHHHHHHHHHHcCCCCCCCCCccccccc--cHHHHHHHHHHHHH-cCCCcccCCCHHHHHHhhcCCCCCCCCCCC
Q psy9410 66 --NKEYVNSIIKTIKWLNFNWDKVKKRIYYASD--YFDILYKIAEYLII-SGDAYVDSQNTEEIYINRGNLHEPGRNSPF 140 (736)
Q Consensus 66 --~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se--~~~~~~~~a~~Li~-~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~ 140 (736)
...+.+.+.+.|+.|||+++- +++++ +-..|.+.+...++ ++.+. +-|...++.....++ +|+
T Consensus 107 ~~~~~~~~~~~~~~~~~gi~~d~-----~~~t~~y~~g~~~~~i~~~l~~~~~i~------~il~~~~~~~~~~~~-~P~ 174 (510)
T PRK00750 107 SYAEHFNAPLREFLDRFGIEYEF-----ISATECYKSGRYDEAILTALENRDEIM------EILLPYLGEERQATY-SPF 174 (510)
T ss_pred HHHHHHHHHHHHHHHHcCCceEE-----EehhhhhccCchHHHHHHHHHhHHHHH------HHHHHhcCCccCCCe-eee
Confidence 245667778889999998873 34444 22234444444333 33322 233334332111111 111
Q ss_pred CCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCcc-----ccC---Ccccc-ccccccccc
Q psy9410 141 YNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHY-----RTN---NNWCI-YPMYDYAHP 211 (736)
Q Consensus 141 r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~-----~~~---~~w~i-~PtY~fa~~ 211 (736)
.-.+.+ -|... ...++ ..|.. . --|-|+.. ..|- +.| =+|++ ||+=
T Consensus 175 ~pic~~----------cg~~~-~~~~~--~~d~~--~----~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~r----- 229 (510)
T PRK00750 175 LPICPK----------CGKVL-TTPVI--SYDAE--A----GTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPMR----- 229 (510)
T ss_pred eeeCCC----------CCccc-eEEEE--EEeCC--C----CEEEEEcC-CCCEEEEecCCCCcccCCCCCcHHH-----
Confidence 111110 01100 00000 11110 0 02444321 1121 111 23444 4431
Q ss_pred hhhhccccceeeccccccC-chhHHHHHHh-hcccCCcCCCCCCceEEEEeeecC-CeecchhhhhhhhhccccCCCCCC
Q psy9410 212 ISDAIENITHSICTLEFQD-HRPFYEWILN-KIDKTNFIKRPFPKQYEFSRLNLT-HTITSKRKLLKLLEKKIVDGWDDP 288 (736)
Q Consensus 212 vdD~~~githvirg~e~~~-~~~~~~~l~~-~l~~~~~~~~~~p~~~~f~~l~~~-g~klSKr~~~~~v~~~~~~gwddp 288 (736)
=...||+....|.||.. +......+.. .+|+ ..|..+.++.+..+ |.|||||+++.+
T Consensus 230 --W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~------~~P~~~~y~~v~~~~G~KMSKSkGN~i------------ 289 (510)
T PRK00750 230 --WAALGVDFEPFGKDHASASYDTSKKIAREILGG------EPPEPFVYELFLDKKGEKISKSKGNVI------------ 289 (510)
T ss_pred --HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCC------CCCeeeeeeeEEeCCCCcccccCCCcc------------
Confidence 13567899999999999 9999999998 9997 67887888888887 899999998755
Q ss_pred CcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccH
Q psy9410 289 RMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINI 324 (736)
Q Consensus 289 r~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~ 324 (736)
++.++.+. +.|+++|.|+.......++..|++
T Consensus 290 ---~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 290 ---TIEDWLEY-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred ---CHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 78888877 999999988887666656666665
No 87
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.08 E-value=1.3e-10 Score=119.26 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=78.6
Q ss_pred hHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCcccc---CCCCCcccceeccccccCcchhHhhCcc----ccc
Q psy9410 551 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIY---GNEKSRCCAIIKENKCIGCTLCIQSCPV----DAI 623 (736)
Q Consensus 551 ~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai 623 (736)
.+...|++|+.+|..|+.++.|.||.++..+|+...++.... ..+...+.+.+|.++||.||+|+++|-. ++|
T Consensus 154 vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EVqg~~aL 233 (297)
T PTZ00305 154 NVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQDFNL 233 (297)
T ss_pred HHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHhhCCcEE
Confidence 356778899999999999999999999999998765553211 1223556788999999999999999986 355
Q ss_pred ccccccc---ee--ecccCcc--CccchhhcCccCceeecccC
Q psy9410 624 IGAAKHM---HT--IFSKLCT--GCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 624 ~~~~~~~---~~--~~~~~C~--~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
.+...+. .. .+...|. +||.|+++||+|||...+.+
T Consensus 234 ~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~ 276 (297)
T PTZ00305 234 GMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDAD 276 (297)
T ss_pred EEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcc
Confidence 4432221 11 1122243 45679999999999877654
No 88
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.06 E-value=1.7e-10 Score=135.06 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=80.4
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCcc---ccCCCCCcccceeccccccCcchhHhhCcc----cccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNT---IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAII 624 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~ 624 (736)
+...|++|+.+|..|..++.|.||.++..+|....++.. ....+...+.+.+|.++||.|++||++|-. +++.
T Consensus 85 ~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~~l~ 164 (603)
T TIGR01973 85 MEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVEDLG 164 (603)
T ss_pred HHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhCCceEE
Confidence 466788999999999999999999999999987665532 112234567889999999999999999975 3444
Q ss_pred cccccce-ee-----cccCccCccchhhcCccCceeeccc
Q psy9410 625 GAAKHMH-TI-----FSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 625 ~~~~~~~-~~-----~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+...+.. .+ ....|..||.|+++||+|||.....
T Consensus 165 ~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~~ 204 (603)
T TIGR01973 165 VIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKPY 204 (603)
T ss_pred EeccCCCCEEecCCCCCCCCcccCChHhhCCccccccccc
Confidence 3322211 11 1236889999999999999986653
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.06 E-value=1e-10 Score=125.78 Aligned_cols=133 Identities=26% Similarity=0.477 Sum_probs=89.4
Q ss_pred CceeeEEEEecccccc--------c-Cccccccccccc-cCcccCCCCC--CCCchhHHHHHHcCcccCccCCCChhHHH
Q psy9410 507 NSKKVISAYLEPNLKL--------I-FPKKHAQFEQNL-LPQTQCTKCG--YPGCRQYAEAIANKKANYNQCPTGGRKGI 574 (736)
Q Consensus 507 ~S~~~~~~~~Ep~l~~--------~-~~~~~~q~er~g-~~p~~C~~C~--~~~C~~~a~~i~~~~~~~~~C~~~~~~~l 574 (736)
.++.++..-++|.-.. + ...+.|..+.+. +.|++...-| .+||.+.++.|+...++ +.-..
T Consensus 465 ~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaq-------a~aAA 537 (622)
T COG1148 465 ADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQ-------AKAAA 537 (622)
T ss_pred cceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHH-------hHHHH
Confidence 3667776556663222 1 112334334332 4456555666 45777666666555444 44445
Q ss_pred HHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCcee
Q psy9410 575 IKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 575 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~ 654 (736)
.+++..++.+.... .....++|+++|++|+.|++ ||++||+.+ . ..+++..|.+||.|+.+||.+||.
T Consensus 538 ~kA~~~l~~g~~~~--------~~~~a~vde~~C~gC~~C~~-Cpf~ais~~-k--a~v~~~~C~gCG~C~~aCp~gai~ 605 (622)
T COG1148 538 AKAAQLLGRGEVEL--------EPFVATVDEDKCTGCGICAE-CPFGAISVD-K--AEVNPLRCKGCGICSAACPSGAID 605 (622)
T ss_pred HHHHHHhhcCceee--------cccccccchhhhcCCcceee-CCCCceecc-c--cccChhhhCcccchhhhCCcccch
Confidence 56666666554332 33456889999999999999 999999987 3 577889999999999999999998
Q ss_pred eccc
Q psy9410 655 MIEV 658 (736)
Q Consensus 655 ~~~~ 658 (736)
+...
T Consensus 606 ~~~f 609 (622)
T COG1148 606 LAGF 609 (622)
T ss_pred hccc
Confidence 8654
No 90
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=99.04 E-value=9.4e-11 Score=92.10 Aligned_cols=47 Identities=38% Similarity=0.981 Sum_probs=32.6
Q ss_pred cccCcchhHhhCcccccccccccceeec--------ccCccCccchhhcCccCce
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAKHMHTIF--------SKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~--------~~~C~~Cg~Cv~~CP~~Ai 653 (736)
+||+||.|+.+||++++.+......... ...|++||.|+++||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 6999999999999999987654432222 2379999999999999998
No 91
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.02 E-value=3.1e-10 Score=133.75 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=82.7
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCcccc---CCCCCcccceeccccccCcchhHhhCcc----cccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIY---GNEKSRCCAIIKENKCIGCTLCIQSCPV----DAII 624 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~ 624 (736)
+...|++|+.+|..|..++.|.||.++..+|....++.... ..+...+.+..|.++||.|++|+++|-. +++.
T Consensus 88 le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev~g~~~l~ 167 (687)
T PRK09130 88 MEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPELG 167 (687)
T ss_pred HHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhhcCCceEE
Confidence 46678899999999999999999999999998766654221 1233456788999999999999999975 2332
Q ss_pred cccccc-eee-----cccCccCccchhhcCccCceeecccCCcccccc
Q psy9410 625 GAAKHM-HTI-----FSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 666 (736)
Q Consensus 625 ~~~~~~-~~~-----~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~ 666 (736)
+...+. ..+ ....|..||.|+++||+|||+-.+.....+.|+
T Consensus 168 ~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~ 215 (687)
T PRK09130 168 AIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWE 215 (687)
T ss_pred eeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcce
Confidence 221111 111 123588999999999999998766543344444
No 92
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.02 E-value=2.8e-10 Score=138.22 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=79.2
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCcc---ccCCCCCcccceeccccccCcchhHhhCcc----cccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNT---IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAII 624 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~ 624 (736)
+...+++|+.+|.+|..++.|.||.++..+|....++.. ....+...+.+..|.++||.|++||++|-. .++.
T Consensus 92 ~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~g~~~l~ 171 (847)
T PRK08166 92 VEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYAGGTDLG 171 (847)
T ss_pred HHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhcCcceEE
Confidence 456678999999999999999999999999977655532 112234567899999999999999999985 2332
Q ss_pred ccccc-ceee-----cccCccCccchhhcCccCceeeccc
Q psy9410 625 GAAKH-MHTI-----FSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 625 ~~~~~-~~~~-----~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+...+ ...+ ....|..||.|+++||+|||+-...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~~ 211 (847)
T PRK08166 172 VYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKTH 211 (847)
T ss_pred EeecCceeEecCCCCCcccChhhCChHhhCCchhcccccc
Confidence 21111 1111 1346889999999999999987654
No 93
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=99.01 E-value=1.9e-10 Score=134.08 Aligned_cols=120 Identities=28% Similarity=0.447 Sum_probs=81.0
Q ss_pred ccccccCcchhHhhCcccccccc---------cccceeecccCccCccchhhcCccCceeecccCCcccc---ccccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTG---WDAWSQK 671 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~---------~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~---~~~~~~~ 671 (736)
....||+||.|+.+||.+++... .......+...|++||.|..+||++ |.+......... -..+...
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~-Iplv~~~r~aK~~i~~~~~~~~ 446 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN-IPLVQYYRQAKAEIRAIEQEKK 446 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC-CcHHHHHHHHHHHHHHhhhhhh
Confidence 56899999999999999987421 1111123456899999999999999 666554322111 1124456
Q ss_pred chHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHhh
Q psy9410 672 KADDARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELK 728 (736)
Q Consensus 672 ~~~~~~~~~~~r~~R~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~ 728 (736)
+.+.++.++..|..|+.|++.++.++++++++.....+ ...++++++++++++
T Consensus 447 ~a~~ar~r~e~r~~R~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~ 499 (695)
T PRK05035 447 KAEEAKARFEARQARLEREKAAREARHKKAAEARAAKD----KDAVAAALARVKAKK 499 (695)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc----cchhHHHHHHHHhhh
Confidence 67779999999999999998888777766544432221 345556666666554
No 94
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.00 E-value=3.9e-10 Score=135.61 Aligned_cols=107 Identities=11% Similarity=0.155 Sum_probs=77.9
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccc---cC-CCCCcccceeccccccCcchhHhhCcc----ccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI---YG-NEKSRCCAIIKENKCIGCTLCIQSCPV----DAI 623 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~---~~-~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai 623 (736)
+...+++|+.+|..|+.++.|.||.++..+|....++... .. ..+..+.+.+|.++||.|++|+++|-. +++
T Consensus 92 le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~rCI~C~rCvr~c~ev~g~~~l 171 (797)
T PRK07860 92 MELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDRERCVLCARCTRFSDQIAGDPFI 171 (797)
T ss_pred HHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecccccccCcHHHHHHHhhcCCcEE
Confidence 4667889999999999999999999999999876555321 11 112335788999999999999999975 334
Q ss_pred ccccccc-ee-----ecccCccCccchhhcCccCceeeccc
Q psy9410 624 IGAAKHM-HT-----IFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 624 ~~~~~~~-~~-----~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+...+. .. .....|..||.|+++||+|||+..+.
T Consensus 172 ~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~~ 212 (797)
T PRK07860 172 DLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAY 212 (797)
T ss_pred EeeecCCCCEEecCCCCCcCccccCCchhhCCccccccccc
Confidence 3322211 11 12346889999999999999986543
No 95
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.00 E-value=3.6e-10 Score=136.22 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=79.9
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccc---cCCCCCcccceeccccccCcchhHhhCcc----cccc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI---YGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAII 624 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~ 624 (736)
+...+++|+.+|.+|..++.|.||.++..+|.....+... ...+...+.+.+|.++||.||+||++|-. +++.
T Consensus 87 l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~ 166 (776)
T PRK09129 87 MEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVMELG 166 (776)
T ss_pred HHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHHhcCCceee
Confidence 4566779999999999999999999999999876555321 12234667889999999999999999975 3444
Q ss_pred cccccce-ee-----cccCccCccchhhcCccCceeeccc
Q psy9410 625 GAAKHMH-TI-----FSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 625 ~~~~~~~-~~-----~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+...+.. .+ ....|..||.|+++||+|||.....
T Consensus 167 ~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~~ 206 (776)
T PRK09129 167 MMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKPF 206 (776)
T ss_pred eeccCCCCEEcCCCCCCccCcccCCchhhCCccccccccc
Confidence 3322211 11 2346888999999999999986653
No 96
>KOG0436|consensus
Probab=99.00 E-value=5.5e-09 Score=110.12 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=172.4
Q ss_pred cceeeeehhccCCCCCCcE-EEEC--CCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcccc-----------
Q psy9410 2 RRIFCFIYDKYGNKLPQVI-TRFA--PEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPLKE----------- 65 (736)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v-~Rfa--P~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~r~----------- 65 (736)
|-|.|-.|+.....+.|++ +-=- =.||-..||||+.++++.+.+||. ..|.-+.-.++||-.-.
T Consensus 22 r~i~~r~ySs~s~~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~ 101 (578)
T KOG0436|consen 22 RAIYCRSYSSESTVDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGR 101 (578)
T ss_pred ceeeeeeccccccccCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCC
Confidence 5577888888888888876 2222 357889999999999999999985 56888888899983222
Q ss_pred -----cHHHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcc-------c-----CCCHHHHHHhh
Q psy9410 66 -----NKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYV-------D-----SQNTEEIYINR 128 (736)
Q Consensus 66 -----~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~-------c-----~~~~e~l~~~r 128 (736)
-+...+++..-.+-+||.++. |--+-...|....+++-..+.++|..|. | |-+..++.+.-
T Consensus 102 ~P~e~cDr~s~~f~qL~k~~gi~yt~--FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p 179 (578)
T KOG0436|consen 102 NPPELCDRISQSFRQLWKDAGIAYTK--FIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNP 179 (578)
T ss_pred ChHHHHhhhhHHHHHHHHHhCcchhh--eeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCC
Confidence 223334555555667999987 1222334577778889999999999993 2 22222222111
Q ss_pred cCC-----CCCCCCCCCCCCChhhh----HHHHHHhhCCcccCCceEEE----EEeeccCCCCCCCCcEEEEeccCCccc
Q psy9410 129 GNL-----HEPGRNSPFYNRLPSES----LNLFRRMRSGEFKDGAHVLR----VKINMKSKNINMRDPIIYRIRHVNHYR 195 (736)
Q Consensus 129 ~~~-----~~~g~~~~~r~~~~~~~----~~~~~~m~~g~~~~~~~~~R----~k~~~~~~~~~~~D~Vl~R~~~~~h~~ 195 (736)
... .+.|.+..++ .|+| +..|.+-....+...+-.+. ...-.+.-...+.|+-|-|... |-.
T Consensus 180 ~~~gk~vsmEsg~~vv~~---kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsa--rl~ 254 (578)
T KOG0436|consen 180 CPPGKVVSMESGNPVVWR---KEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSA--RLD 254 (578)
T ss_pred CCCCceeeeccCCceeEe---cccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhh--hcc
Confidence 100 0011111111 1221 11111111100000000000 0000011134467877777432 222
Q ss_pred cC-----Ccc-ccccccc----cccchhh-------------hccccceeecccccc-CchhHHHHHHhhcccCCcCCCC
Q psy9410 196 TN-----NNW-CIYPMYD----YAHPISD-------------AIENITHSICTLEFQ-DHRPFYEWILNKIDKTNFIKRP 251 (736)
Q Consensus 196 ~~-----~~w-~i~PtY~----fa~~vdD-------------~~~githvirg~e~~-~~~~~~~~l~~~l~~~~~~~~~ 251 (736)
|| |+- .||-=+| +-.+|-. -.=.-.|+| |+|.. -|.--+.+++-+-|+ .
T Consensus 255 WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGl------p 327 (578)
T KOG0436|consen 255 WGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGL------P 327 (578)
T ss_pred cCCCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCC------C
Confidence 22 111 1111110 0001100 000123666 55543 355566777778888 6
Q ss_pred CCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 252 FPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 252 ~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
.|+++ --+|...+|.||||+.|+.+ || .+|.++ |.++++|.|++..|.-..|.+++.+.|+..
T Consensus 328 lP~~I~vHghwt~ngmKMsKSLGNvv----------dP-----~~l~~k-ygvD~vRyflLr~~~l~~Dgdy~eekl~k~ 391 (578)
T KOG0436|consen 328 LPKMIFVHGHWTKNGMKMSKSLGNVV----------DP-----FELVQK-YGVDAVRYFLLREGELGNDGDYSEEKLIKI 391 (578)
T ss_pred CccEEEEeeeeeecceecchhhcccc----------CH-----HHHHHH-hCccceeeEeeeccccCCCCCccHHHHHHH
Confidence 78776 45778999999999998654 44 455655 999999999999999888999999888877
Q ss_pred Hhccc
Q psy9410 331 LRDDL 335 (736)
Q Consensus 331 ~~~~l 335 (736)
.+.+|
T Consensus 392 ~n~~L 396 (578)
T KOG0436|consen 392 VNAHL 396 (578)
T ss_pred HHHHH
Confidence 66544
No 97
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.99 E-value=2.1e-10 Score=111.17 Aligned_cols=86 Identities=27% Similarity=0.738 Sum_probs=69.1
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|+ .+||+++... ....+.+.++.+.|++|+.|+
T Consensus 59 ~~~~~C~~C~~~~C~-------------~~CP~~ai~~---------------------~~~~~~~~i~~~~C~~C~~C~ 104 (161)
T TIGR02951 59 YISISCNHCADPACV-------------KNCPTGAMYK---------------------REEDGLVLVDQDKCIGCRYCV 104 (161)
T ss_pred EcCccCCCcCCcchH-------------HhCCCCCEEe---------------------ecCCCcEEECHHhCCCchHHH
Confidence 457899999999998 8999876420 112345788999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc---------chhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~~ 658 (736)
.+||+++|...... ....+|++|+ .|+.+||++||.+.+.
T Consensus 105 ~aCP~~ai~~~~~~---~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 105 WACPYGAPQYDPQQ---GVMGKCDGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred hhCCCCCcEEcCCC---CccccCCCCHHHHHCCCCCcchhhccccceEEecH
Confidence 99999999876432 2346899997 8999999999998764
No 98
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=98.99 E-value=1.3e-10 Score=97.10 Aligned_cols=60 Identities=35% Similarity=0.821 Sum_probs=52.8
Q ss_pred ccceeccccccCcchhHhhCccccccccccccee-ecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHT-IFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~-~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+++|.++|++|+.|..-||.++|....++... ++.+.|.|||.|+++||++||.+...
T Consensus 28 ~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 28 FRPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred EeeEEcccccccCceeEEECCchheeeccCCccceeEcccccCceechhhCChhheEeEee
Confidence 3568899999999999999999999877665544 78899999999999999999998764
No 99
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.98 E-value=2e-10 Score=113.49 Aligned_cols=86 Identities=24% Similarity=0.721 Sum_probs=66.9
Q ss_pred CcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHh
Q psy9410 537 PQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQ 616 (736)
Q Consensus 537 ~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~ 616 (736)
.+..|.+|+.+.|+ .+||+++.. ...+.+.++.++|++|+.|+.
T Consensus 54 ~~~~C~~C~~~~C~-------------~~Cp~~ai~-----------------------~~~~~v~i~~~~C~~C~~C~~ 97 (181)
T PRK10330 54 TATVCRQCEDAPCA-------------NVCPNGAIS-----------------------RDKGFVHVMQERCIGCKTCVV 97 (181)
T ss_pred cCCcCcCcCCcHHH-------------HHcCcccEE-----------------------ccCCeEEeChhhCCCcchhhh
Confidence 35799999999999 889987632 012346789999999999999
Q ss_pred hCcccccccccccc------------eeecccCccCcc------chhhcCccCceeeccc
Q psy9410 617 SCPVDAIIGAAKHM------------HTIFSKLCTGCD------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 617 ~CP~~ai~~~~~~~------------~~~~~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 658 (736)
+||++||.+..... ..+...+|..|+ .|+.+||++||.+.+.
T Consensus 98 ~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 98 ACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred hCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 99999997642110 123456899998 8999999999998754
No 100
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.93 E-value=6.6e-10 Score=102.18 Aligned_cols=63 Identities=22% Similarity=0.683 Sum_probs=52.9
Q ss_pred CCcccceeccccccCcchhHhhCcccccccccc-cceeecccCccCccchhhcCccCceeeccc
Q psy9410 596 KSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 596 ~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~-~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...+.+.++.++|++||.|+.+||.+++....+ ....++...|++||.|+.+||++||.+...
T Consensus 32 ~~~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 32 DFRGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred cccceEEECcccCcCcccHHHHCCccceEccccccceEecCCcCcChhhhHHhCCcCcEEeccc
Confidence 455788999999999999999999999876533 224567789999999999999999998764
No 101
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.92 E-value=7.4e-10 Score=127.67 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=79.9
Q ss_pred HHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCC---CCCcccceeccccccCcchhHhhCccccc----cc
Q psy9410 553 AEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGN---EKSRCCAIIKENKCIGCTLCIQSCPVDAI----IG 625 (736)
Q Consensus 553 a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai----~~ 625 (736)
.-.+.+|+.+|.+|..++.|.||.++..+|+...++...... ....+.+..|.++||.|++||++|-.-+- .+
T Consensus 88 E~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RCVR~c~eiaG~~~l~~ 167 (693)
T COG1034 88 EFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRCVRFCKEIAGTHELGV 167 (693)
T ss_pred HHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcccccceechhhHHhhhhhcCccccce
Confidence 456789999999999999999999999999887776432221 12234445999999999999999986332 11
Q ss_pred ccccc-ee--ec---ccCccCccchhhcCccCceeecccCCcccccc
Q psy9410 626 AAKHM-HT--IF---SKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 666 (736)
Q Consensus 626 ~~~~~-~~--~~---~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~ 666 (736)
-..+. .. .. ...-..||.|+++||+|||+-.......+.|+
T Consensus 168 ~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~~~~ar~wE 214 (693)
T COG1034 168 IKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPFAFTARKWE 214 (693)
T ss_pred eecCCCceeecccccccccccccceeeeccccccccChHHhhhccch
Confidence 11110 00 01 11236899999999999998877644445454
No 102
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.92 E-value=4.1e-10 Score=98.30 Aligned_cols=59 Identities=29% Similarity=0.688 Sum_probs=48.0
Q ss_pred cccceeccccccCcchhHhhCcccccccccc--------------c-----ceeecccCccCccchhhcCccCceeec
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIGAAK--------------H-----MHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~--------------~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
...+.+|.++|++|+.|+.+||.++|..... . ...++...|++||.|+.+||++||++.
T Consensus 13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 13 QFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 3457889999999999999999999875420 0 113567899999999999999999874
No 103
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.90 E-value=7e-10 Score=99.13 Aligned_cols=60 Identities=28% Similarity=0.692 Sum_probs=51.4
Q ss_pred ccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.+|.++|++|+.|+.+||.+++..+.++...++...|++|+.|+.+||++||.+...
T Consensus 44 ~~p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09624 44 FMPEFNRDKCVRCYLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIEMVRE 103 (105)
T ss_pred EEEEEChhHCcChhhHHhhCCHhhEEecCCCcEEECchhCCCcCchhhhcCcCcEEEecc
Confidence 345789999999999999999999987655545678889999999999999999988643
No 104
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.88 E-value=1.3e-09 Score=107.35 Aligned_cols=64 Identities=22% Similarity=0.540 Sum_probs=52.9
Q ss_pred CCCcccceeccccccCcchhHhhCccccccccccc-----ceeecccCccCccchhhcCccCceeeccc
Q psy9410 595 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 595 ~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...++.+.+|.+.|++||.|+.+||.+||....+. ...++...|++||.|+.+||++||.+...
T Consensus 27 ~~~rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~ 95 (181)
T PRK08222 27 PGFRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNN 95 (181)
T ss_pred CCccCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccc
Confidence 44567889999999999999999999999764321 12456789999999999999999998754
No 105
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.86 E-value=1.4e-09 Score=91.98 Aligned_cols=58 Identities=33% Similarity=0.757 Sum_probs=50.1
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.++.++|++|+.|+.+||.+++.....+...++...|++|+.|+.+||++||.+..
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~~~~~~~i~~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQEDEGGFVGIDYDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEecCCCcEEecCccCcCccchhhhCCccccEecc
Confidence 4578999999999999999999988754444567778999999999999999998864
No 106
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.85 E-value=1.1e-09 Score=102.21 Aligned_cols=57 Identities=30% Similarity=0.726 Sum_probs=48.2
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeec
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.+.++.++|++|+.|+.+||.++|.........++...|++||.|+.+||++|+.+.
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRDKKLKGVDYSHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecCCceEEeCcCcCcChhHHHHHCCcCceEEE
Confidence 467899999999999999999998765444445677899999999999999997654
No 107
>KOG3256|consensus
Probab=98.85 E-value=1e-09 Score=101.07 Aligned_cols=62 Identities=31% Similarity=0.541 Sum_probs=50.5
Q ss_pred cceeccccccCcchhHhhCccccccccccc---------ceeecccCccCccchhhcCccCceeecccCCc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKH---------MHTIFSKLCTGCDLCIKKCPVNCISMIEVTPC 661 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~---------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~ 661 (736)
....-.++||.|..|+.+||.++|.++... ...+|..+|+.||.|+++||++||...+...+
T Consensus 105 Ryp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegpnfEf 175 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEF 175 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceeccCCcee
Confidence 445568999999999999999999875322 23467789999999999999999999877643
No 108
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.84 E-value=1.8e-09 Score=96.59 Aligned_cols=60 Identities=30% Similarity=0.767 Sum_probs=51.4
Q ss_pred ccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.++.++|++|+.|+.+||.+++....++...++...|.+||.|+.+||++||.+...
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIYIKEDGYVAIDYDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheEecCCCcEEeCchhCcCcchhhhhcCcCcEEeccc
Confidence 456789999999999999999999876544445678889999999999999999988653
No 109
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.83 E-value=1.9e-09 Score=96.22 Aligned_cols=61 Identities=21% Similarity=0.633 Sum_probs=49.8
Q ss_pred cccceeccccccCcchhHhhCccccccccccc-------ceeecccCccCccchhhcCccCceeeccc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-------MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~-------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...+.+|.+.|++|+.|+.+||.+++...... ...++...|++|+.|+.+||++||.+.+.
T Consensus 8 ~~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~~ 75 (103)
T PRK09626 8 NTPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred CCCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEecc
Confidence 45677899999999999999999998754321 12356679999999999999999998664
No 110
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.81 E-value=3.1e-09 Score=104.76 Aligned_cols=64 Identities=30% Similarity=0.655 Sum_probs=50.6
Q ss_pred CCcccceeccccccCcchhHhhCccccccccc----------ccceeecccCccCccchhhcCccCceeecccC
Q psy9410 596 KSRCCAIIKENKCIGCTLCIQSCPVDAIIGAA----------KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 596 ~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~----------~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
...+.+.++.++|++||.|+.+||.+++.... .....++...|++||.|+++||++||.+....
T Consensus 52 ~~rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~ 125 (183)
T TIGR00403 52 RFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEY 125 (183)
T ss_pred cccceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeeccccc
Confidence 34577889999999999999999999864321 01234566789999999999999999987653
No 111
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.80 E-value=2.6e-09 Score=107.83 Aligned_cols=93 Identities=26% Similarity=0.700 Sum_probs=66.8
Q ss_pred ccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceecccccc-----Ccch
Q psy9410 539 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCI-----GCTL 613 (736)
Q Consensus 539 ~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci-----~Cg~ 613 (736)
..|.+|+.+.|+ .+||+++...... ... .......+.+|.+.|+ +|+.
T Consensus 91 ~~C~~C~d~~Cv-------------~~CP~~Ai~~~~~---~~~-----------~~~~g~av~id~~~C~~~~g~~C~~ 143 (213)
T TIGR00397 91 VPCRMCKDIPCA-------------RACPTGALDPLLT---DIR-----------KADMGVAVLVGHETCLNYKGLNCSI 143 (213)
T ss_pred CcCCCCCCchHH-------------hHcCHhhhchhhh---ccc-----------cccCceEEEECCCCcccCCCCCccc
Confidence 469999988898 8999998642110 000 0111122468899998 9999
Q ss_pred hHhhCcc--cccccccc-------cceeecccCccCccchhhcCccC--ceeeccc
Q psy9410 614 CIQSCPV--DAIIGAAK-------HMHTIFSKLCTGCDLCIKKCPVN--CISMIEV 658 (736)
Q Consensus 614 C~~~CP~--~ai~~~~~-------~~~~~~~~~C~~Cg~Cv~~CP~~--Ai~~~~~ 658 (736)
|+++||+ .||.+... ....++.++|++||.|+++||++ ||.+.+.
T Consensus 144 C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 144 CVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred chhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 9999999 68875421 23567888999999999999987 8877654
No 112
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.80 E-value=1.7e-09 Score=83.89 Aligned_cols=46 Identities=39% Similarity=0.950 Sum_probs=30.3
Q ss_pred cccCcchhHhhCcccccccccc------cceeecccCccCccchhhcCccCc
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAK------HMHTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~------~~~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
+|++||.|+.+||.++|.+... ....++...|++||.|+.+||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 5999999999999999976432 234567889999999999999997
No 113
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.79 E-value=2.8e-09 Score=126.09 Aligned_cols=87 Identities=22% Similarity=0.658 Sum_probs=69.5
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|+ .+||+++... ..+.+.+|.++|++|+.|+
T Consensus 51 ~~~~~C~~C~~~~C~-------------~~CP~~ai~~-----------------------~~~~~~id~~~C~~C~~C~ 94 (654)
T PRK12769 51 RSAVTCHHCEDAPCA-------------RSCPNGAISH-----------------------VDDSIQVNQQKCIGCKSCV 94 (654)
T ss_pred cCCccCCCCCChhHh-------------hhCCccceec-----------------------cCCeEEEecccccCcChhc
Confidence 457899999999999 8999887430 1124678999999999999
Q ss_pred hhCcccccccccccc----eeecccCccCcc------chhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHM----HTIFSKLCTGCD------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~----~~~~~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 658 (736)
.+||++++.+..... ......+|..|+ .|+.+||++||.+.+.
T Consensus 95 ~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~ 147 (654)
T PRK12769 95 VACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTE 147 (654)
T ss_pred ccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecH
Confidence 999999998653321 134567899998 9999999999998764
No 114
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.79 E-value=2.3e-09 Score=114.57 Aligned_cols=60 Identities=28% Similarity=0.721 Sum_probs=49.4
Q ss_pred cccceeccccccCcchhHhhCcccccccc----cccceeecccCccCccchhhcCccCceeecc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIGA----AKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~----~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.+.+|.++|++||.|+.+||++++.+. ......++...|++||.|+.+||++||.+..
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence 34578899999999999999999998621 2223456778999999999999999998854
No 115
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.79 E-value=3e-09 Score=87.37 Aligned_cols=58 Identities=29% Similarity=0.690 Sum_probs=49.9
Q ss_pred ceeccccccCcchhHhhCccccccccc---ccceeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA---KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~---~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+.+|.++|++|+.|+.+||.+.+.... ......+++.|++||.|+.+||++||.+...
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred eEECchhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcceEEEecc
Confidence 468899999999999999999988764 3345678899999999999999999988654
No 116
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.78 E-value=4e-09 Score=104.03 Aligned_cols=63 Identities=24% Similarity=0.561 Sum_probs=52.2
Q ss_pred CCcccceeccccccCcchhHhhCccccccccccc-----ceeecccCccCccchhhcCccCceeeccc
Q psy9410 596 KSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 596 ~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...+.+.+|.++|++|+.|+.+||.++|....+. ...++...|++||.|+.+||++||.+...
T Consensus 28 ~~rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~ 95 (180)
T PRK12387 28 NFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95 (180)
T ss_pred CCCCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCc
Confidence 4457789999999999999999999999765321 12467789999999999999999998654
No 117
>CHL00065 psaC photosystem I subunit VII
Probab=98.77 E-value=3e-09 Score=90.64 Aligned_cols=58 Identities=28% Similarity=0.688 Sum_probs=45.8
Q ss_pred eeccccccCcchhHhhCccccccccccc------c-eeecccCccCccchhhcCccCceeecccC
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGAAKH------M-HTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~------~-~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
.++.++|++|+.|+.+||++++...... . ..++...|++|+.|+.+||++||.+....
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~ 69 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred cCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEEe
Confidence 4567899999999999999988764311 1 13345789999999999999999987653
No 118
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.75 E-value=6.1e-09 Score=101.21 Aligned_cols=62 Identities=31% Similarity=0.604 Sum_probs=50.2
Q ss_pred cccceeccc-----cccCcchhHhhCcccccccccc----c-----ceeecccCccCccchhhcCccCceeecccC
Q psy9410 598 RCCAIIKEN-----KCIGCTLCIQSCPVDAIIGAAK----H-----MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 598 ~~~~~~d~~-----~Ci~Cg~C~~~CP~~ai~~~~~----~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
.+.+.++.+ +|++|+.|+.+||.++|.+... + ...++...|++||.|+.+||++||.+....
T Consensus 45 ~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 120 (164)
T PRK05888 45 RGRHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDF 120 (164)
T ss_pred CCEEeecCCCCCCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcc
Confidence 466778888 9999999999999999875431 1 123567899999999999999999987653
No 119
>PRK06273 ferredoxin; Provisional
Probab=98.75 E-value=3.5e-09 Score=102.07 Aligned_cols=56 Identities=30% Similarity=0.540 Sum_probs=46.4
Q ss_pred cceeccccccCcchhHhhCcccccccccc------------cceeecccCccCccchhhcCccCceee
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAK------------HMHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~------------~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
...++.+.|++||.|+.+||.+||.+... ....++..+|++||.|+.+||++||..
T Consensus 43 ~~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 43 PKKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CCeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 34679999999999999999999986531 123567789999999999999999954
No 120
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.74 E-value=4.7e-09 Score=89.46 Aligned_cols=58 Identities=28% Similarity=0.665 Sum_probs=45.7
Q ss_pred ceeccccccCcchhHhhCcccccccccc-c-c-----eeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAK-H-M-----HTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~-~-~-----~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..++.++|++|+.|+++||.+++..... + . ...+...|++||.|+.+||++||.+...
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 3567789999999999999998876421 1 0 1235578999999999999999998654
No 121
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.73 E-value=4.1e-09 Score=81.70 Aligned_cols=48 Identities=40% Similarity=0.958 Sum_probs=24.2
Q ss_pred ceeccccccCcchhHhhCcc---cccccccccceeecccCccCccchhhcCc
Q psy9410 601 AIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCTGCDLCIKKCP 649 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~---~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP 649 (736)
+.+|.++|++||.|+++||. .++... .....++..+|++||.|+++||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~-~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDG-EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE--SSSEEE-TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhcc-CCCeEeCcccccccChhhhhCc
Confidence 57899999999999999998 233322 3345668899999999999999
No 122
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.73 E-value=3.9e-09 Score=106.98 Aligned_cols=60 Identities=30% Similarity=0.601 Sum_probs=53.7
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecccC
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
...+|.++|+.||.|.++|+++||....++...+++..|.|||.|.-+||.+||.+.+..
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~ 122 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVV 122 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccce
Confidence 567899999999999999999999876666677889999999999999999999987764
No 123
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=98.71 E-value=1.4e-07 Score=114.07 Aligned_cols=93 Identities=22% Similarity=0.105 Sum_probs=67.5
Q ss_pred EEE-CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------cc------------cccHH
Q psy9410 21 TRF-APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------PL------------KENKE 68 (736)
Q Consensus 21 ~Rf-aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------~~------------r~~~~ 68 (736)
.=. +|+|||.|||||+++.++.+.+||. ..|.-++..-++| +. ....+
T Consensus 42 i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~ 121 (800)
T PRK13208 42 IDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDE 121 (800)
T ss_pred EecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHH
Confidence 444 7999999999999999999999984 4577777655544 22 13456
Q ss_pred HHHHHHHHHHHcCCCCC--CCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLNFNWD--KVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLGi~~d--~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
+.+.|.++++.||+..| . .+++++ |.......-.+|.++|++|..
T Consensus 122 ~~~~~~~~~~~lg~s~Dw~~----~~~T~d~~~~~~v~~~f~~L~~~Gliy~~ 170 (800)
T PRK13208 122 DEKKFRELWRRLGLSVDWSL----EYQTISPEYRRISQKSFLDLYKKGLIYRA 170 (800)
T ss_pred HHHHHHHHHHHhCeeeccCC----CcccCCHHHHHHHHHHHHHHHHCCCeeec
Confidence 88999999999998544 4 444433 334444555789999999943
No 124
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.71 E-value=5.9e-09 Score=96.67 Aligned_cols=58 Identities=28% Similarity=0.633 Sum_probs=49.3
Q ss_pred ceeccccccCcc-----hhHhhCccccccccccc--ceeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg-----~C~~~CP~~ai~~~~~~--~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+.+++++|++|+ .|+.+||.++|..+... ...++...|++|+.|+.+||++||.+...
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 67 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAIDVRGY 67 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCcCceEEECc
Confidence 467899999999 99999999999876442 22467889999999999999999998754
No 125
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.71 E-value=7.1e-09 Score=122.25 Aligned_cols=82 Identities=24% Similarity=0.685 Sum_probs=65.8
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|+ .+||+++... ..+.+.+|.++|++|+.|+
T Consensus 51 ~~~~~C~~C~~~~C~-------------~~CP~~ai~~-----------------------~~~~v~~d~~~C~gC~~C~ 94 (639)
T PRK12809 51 ANPVACHHCNNAPCV-------------TACPVNALTF-----------------------QSDSVQLDEQKCIGCKRCA 94 (639)
T ss_pred ccCCCCcCcCChhHH-------------hhCCcCceec-----------------------cccceecChhhCcchhhHh
Confidence 457899999999998 8999987430 1124678999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc-------chhhcCccCceeeccc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD-------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg-------~Cv~~CP~~Ai~~~~~ 658 (736)
.+||++++..... ...+|..|+ .|+.+||++||.+.+.
T Consensus 95 ~~CP~~ai~~~~~-----~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~ 139 (639)
T PRK12809 95 IACPFGVVEMVDT-----IAQKCDLCNQRSSGTQACIEVCPTQALRLMDD 139 (639)
T ss_pred hhcCCCCEEccCC-----CcccccCCcccCCCCChhhhhCccceEEEech
Confidence 9999999987543 235787776 6999999999998764
No 126
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.71 E-value=6.4e-09 Score=91.93 Aligned_cols=58 Identities=40% Similarity=0.846 Sum_probs=48.7
Q ss_pred ceeccccccCcchhHhhCcccccccccc----cceeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAK----HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~----~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..++.++|++||.|+.+||++||..... ....++...|+.|+.|+.+||++||.+...
T Consensus 24 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 24 LVIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EEeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 3678899999999999999999987432 345667889999999999999999887654
No 127
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=98.70 E-value=1.3e-08 Score=99.11 Aligned_cols=62 Identities=34% Similarity=0.701 Sum_probs=48.3
Q ss_pred CcccceeccccccCcchhHhhCcccccccccc----------cceeecccCccCccchhhcCccCceeeccc
Q psy9410 597 SRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 597 ~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~----------~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.+.++.+.|++||.|+.+||.+++..... ....++...|++||.|+.+||++||.+...
T Consensus 50 ~rg~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~ 121 (167)
T CHL00014 50 FRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEE 121 (167)
T ss_pred cCCeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCc
Confidence 35667789999999999999999987643211 012345578999999999999999998654
No 128
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.70 E-value=8.1e-09 Score=106.94 Aligned_cols=92 Identities=25% Similarity=0.688 Sum_probs=65.1
Q ss_pred ccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceecccccc-----Ccch
Q psy9410 539 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCI-----GCTL 613 (736)
Q Consensus 539 ~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci-----~Cg~ 613 (736)
..|..|+...|+ .+||+++...... ... .......+.+|.++|+ +|+.
T Consensus 97 ~~C~~C~~~~Cv-------------~aCPtgAL~~~~~-----~~~---------~~~~g~av~id~~~Ci~~~~~~C~~ 149 (254)
T PRK09476 97 IPCEMCEDIPCV-------------KACPSGALDRELV-----DID---------DARMGLAVLVDQENCLNFQGLRCDV 149 (254)
T ss_pred CcCcCCCCCchh-------------hccCccceEeecc-----ccc---------ccccCceeecchhhccccCCCchHH
Confidence 469999877798 8999998641100 000 0001112348999999 8999
Q ss_pred hHhhCcc--ccccccccc----------ceeecccCccCccchhhcCccC--ceeecc
Q psy9410 614 CIQSCPV--DAIIGAAKH----------MHTIFSKLCTGCDLCIKKCPVN--CISMIE 657 (736)
Q Consensus 614 C~~~CP~--~ai~~~~~~----------~~~~~~~~C~~Cg~Cv~~CP~~--Ai~~~~ 657 (736)
|+++||+ +||.+.... ...++.+.|++||.|+.+||++ ||.+.+
T Consensus 150 C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 150 CYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred HhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEeh
Confidence 9999997 788765321 2456778999999999999998 887654
No 129
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.68 E-value=2.7e-07 Score=104.50 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=62.5
Q ss_pred cccceeeccccccCch----hHHHHHHhhcccCCcCCCCCCc--eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCc
Q psy9410 217 ENITHSICTLEFQDHR----PFYEWILNKIDKTNFIKRPFPK--QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRM 290 (736)
Q Consensus 217 ~githvirg~e~~~~~----~~~~~l~~~l~~~~~~~~~~p~--~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~ 290 (736)
.|||-=--|.||.++. .......+.||. .+|. .++|.||..+|.|||||+++.+
T Consensus 224 lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~------~~P~~~~ye~v~L~~~g~KMSKS~Gn~i-------------- 283 (515)
T TIGR00467 224 EKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQY------SPPVTVQYEWISLKGKGGKMSSSKGDVI-------------- 283 (515)
T ss_pred hCcccccCCCCccCccCCchhHHHHHHHHhCC------CCCcCcEEEEEEEcCCCccccCCCCCCc--------------
Confidence 4455556677777633 344444458865 4553 4577888777889999998765
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHH
Q psy9410 291 PTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEIL 327 (736)
Q Consensus 291 ~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l 327 (736)
|++++++. +.|+++|.| .......+..+|+++.|
T Consensus 284 -tl~dll~~-~~pdalR~~-~l~~~~~~~ldFd~~~l 317 (515)
T TIGR00467 284 -SVKDVLEV-YTPEITRFL-FARTKPEFHISFDLDVI 317 (515)
T ss_pred -cHHHHHHH-cCHHHHHHH-HhccCCCCCCcCCHHHH
Confidence 99999998 999999965 44555566677887766
No 130
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.67 E-value=1.2e-08 Score=99.18 Aligned_cols=49 Identities=35% Similarity=0.693 Sum_probs=41.1
Q ss_pred cCcchhHhhCcccccccccc--c--ceeecccCccCccchhhcCccCceeecc
Q psy9410 609 IGCTLCIQSCPVDAIIGAAK--H--MHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 609 i~Cg~C~~~CP~~ai~~~~~--~--~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
++|+.|+++||.+||.+... + ...++.+.|++||.|+.+||++||++..
T Consensus 107 ~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 107 VECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCcCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEecc
Confidence 79999999999999987532 1 2356778999999999999999999864
No 131
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=98.66 E-value=8.8e-09 Score=108.32 Aligned_cols=56 Identities=23% Similarity=0.570 Sum_probs=44.2
Q ss_pred eccccccCcchhHhhCccccccc---ccc-cceeecccCccCccchhhcCccCceeeccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIG---AAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~---~~~-~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+|.++|++|+.|+++||.+++.. ... ....++...|+.||.|+++||++||++...
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence 78999999999999999987532 111 111256678999999999999999998653
No 132
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=98.64 E-value=1.2e-06 Score=106.83 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=66.9
Q ss_pred ECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc--------------------------------cccHH
Q psy9410 23 FAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL--------------------------------KENKE 68 (736)
Q Consensus 23 faP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~--------------------------------r~~~~ 68 (736)
=+|++||.|||||+++.++.+.+||. ..|.-++..-++|-. ....+
T Consensus 40 ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~ 119 (861)
T TIGR00422 40 PPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEE 119 (861)
T ss_pred CCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHH
Confidence 36999999999999999999999984 458888877666611 11356
Q ss_pred HHHHHHHHHHHcCCC--CCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLNFN--WDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLGi~--~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
|...|.+.++.||+. |+. .+++.+ +.......-.+|.++|++|..
T Consensus 120 ~~~~~~~~~~~lG~s~Dw~r----~~~T~d~~~~~~v~~~F~~L~~~GlIy~~ 168 (861)
T TIGR00422 120 SGGTIKNQIKRLGASLDWSR----ERFTMDEGLSKAVKEAFVRLYEKGLIYRG 168 (861)
T ss_pred HHHHHHHHHHHhCeeeecCC----CcCcCCHHHHHHHHHHHHHHHHCCCeeec
Confidence 788999999999965 543 455543 333344455789999999943
No 133
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.64 E-value=1.6e-08 Score=93.33 Aligned_cols=61 Identities=36% Similarity=0.725 Sum_probs=48.0
Q ss_pred cccceecc-----ccccCcchhHhhCcccccccccc----c-----ceeecccCccCccchhhcCccCceeeccc
Q psy9410 598 RCCAIIKE-----NKCIGCTLCIQSCPVDAIIGAAK----H-----MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 598 ~~~~~~d~-----~~Ci~Cg~C~~~CP~~ai~~~~~----~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+.+.++. ++|++|+.|+.+||.+++..... + ...++...|.+||.|+.+||++||.+...
T Consensus 30 ~g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 30 RGRIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred CCeEeeccCCCCcCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccce
Confidence 45566666 99999999999999988765321 1 13456788999999999999999988765
No 134
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.63 E-value=1.5e-08 Score=86.07 Aligned_cols=58 Identities=28% Similarity=0.677 Sum_probs=45.5
Q ss_pred ceeccccccCcchhHhhCcccccccccc-c----c--eeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAK-H----M--HTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~-~----~--~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
++.+.+.|++|+.|+++||.+++..... + . ...+...|++||.|+++||++||.+...
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVY 67 (80)
T ss_pred ceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEe
Confidence 4567789999999999999998876431 1 1 1234578999999999999999988544
No 135
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.60 E-value=2.1e-08 Score=104.53 Aligned_cols=53 Identities=25% Similarity=0.585 Sum_probs=42.2
Q ss_pred ccccccCcchhHhhCccccc-cccc--ccceeecccCccCccchhhcCccCceeec
Q psy9410 604 KENKCIGCTLCIQSCPVDAI-IGAA--KHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai-~~~~--~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
|+++|++|+.|+++||++++ .... .+...++...|+.||.|+++||++||+++
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCccccccc
Confidence 48999999999999999864 2211 12335667889999999999999999874
No 136
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.52 E-value=3.7e-08 Score=95.63 Aligned_cols=87 Identities=23% Similarity=0.482 Sum_probs=61.7
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
++...|..|+ .|+ .+||.+... .+ ....+.+.++.+.|++|+.|+
T Consensus 31 ~~~~~C~~Cg--~C~-------------~aCp~~~i~--------~~------------~~~~~~~~~~~~~C~~C~~C~ 75 (163)
T PRK10194 31 HFLTHCTRCD--ACI-------------NACENNILQ--------RG------------AGGYPSVNFKNNECSFCYACA 75 (163)
T ss_pred HHhhhCcChh--HHH-------------HHcChhhcc--------cC------------CCCceeeeecCCCCCCchhhH
Confidence 4667899999 477 889876532 00 111223567889999999999
Q ss_pred hhCcccccccccc---cceeecccCc-----cCccchhhcCccCceeecc
Q psy9410 616 QSCPVDAIIGAAK---HMHTIFSKLC-----TGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 616 ~~CP~~ai~~~~~---~~~~~~~~~C-----~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+||++++..... .......+.| ++|+.|+++||++||.+..
T Consensus 76 ~~CP~~ai~~~~~~~~~~~~~~~~~C~~~~~~~C~~C~~~CP~~Ai~~~~ 125 (163)
T PRK10194 76 QACPESLFSPRHTRAWDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRP 125 (163)
T ss_pred hhCcchheecccccccceeeeecccCCCccCCCcCcchhhCCHhHeEeee
Confidence 9999999875322 1122234456 7999999999999999864
No 137
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.51 E-value=5.7e-08 Score=82.79 Aligned_cols=56 Identities=29% Similarity=0.697 Sum_probs=43.7
Q ss_pred eccccccCcchhHhhCcccccccccc-----cc--eeecccCccCccchhhcCccCceeeccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGAAK-----HM--HTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~~~-----~~--~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...++|++|+.|+.+||.+++..... .. ...+...|.+|+.|+.+||++||.+...
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 68 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY 68 (81)
T ss_pred cccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEEE
Confidence 34689999999999999998865321 11 1235578999999999999999998654
No 138
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=98.51 E-value=4.7e-06 Score=101.72 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=66.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCccc--------------------------------ccHHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPLK--------------------------------ENKEY 69 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~r--------------------------------~~~~~ 69 (736)
||++||.||||||++.++.+.++|. ..|.-+|..-++|-.- ...++
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999985 4577777777776210 03567
Q ss_pred HHHHHHHHHHcCCC--CCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 70 VNSIIKTIKWLNFN--WDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 70 ~~~i~~dl~wLGi~--~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
.+.|.+.++.||+. |+. .+++.+ +.......-.+|.++|++|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r----~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSR----ERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCC----CcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 78999999999975 554 555543 33334455588999999993
No 139
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.51 E-value=6.1e-08 Score=85.13 Aligned_cols=57 Identities=26% Similarity=0.659 Sum_probs=43.9
Q ss_pred eeccccccCcc--hhHhhCccccccccc-ccceeecccCccCccchhhcCccCceeeccc
Q psy9410 602 IIKENKCIGCT--LCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg--~C~~~CP~~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+....|.+|. .|+++||++||..+. ++...++.++|++|+.|+.+||.+||.+...
T Consensus 3 ~~~~~~C~hC~~ppC~~~CP~~Ai~~~~~~G~V~id~~~CigC~~C~~aCP~~ai~~~~~ 62 (98)
T PF13247_consen 3 EFVPVQCRHCEDPPCVEACPTGAIYKDPEDGIVVIDEDKCIGCGYCVEACPYGAIRFDPD 62 (98)
T ss_dssp EEEEEC---BSS-HHHHHCTTTSEEEETTTS-EEE-TTTCCTHHHHHHH-TTS-EEEETT
T ss_pred eEeCCcCcCcCCCchhhhCCccceEEEcCCCeEEechhhccCchhhhhhhccCcceeecc
Confidence 45677899996 899999999998876 6778889999999999999999999998764
No 140
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.49 E-value=6e-08 Score=86.25 Aligned_cols=56 Identities=18% Similarity=0.422 Sum_probs=45.9
Q ss_pred ceeccccccCcchhHhhCccccccccccc--ceeecccCccCccchhhcCccCceeec
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~--~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..++.+.|++|+.|+.+||.+++.....+ ...++...|++||.|+.+||++||...
T Consensus 29 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 29 ESLFSAVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred cccCcCcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCccccCcC
Confidence 34567899999999999999998875432 235667799999999999999999754
No 141
>PRK07118 ferredoxin; Validated
Probab=98.48 E-value=6.9e-08 Score=101.51 Aligned_cols=56 Identities=34% Similarity=0.852 Sum_probs=49.3
Q ss_pred eccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
++...|++|+.|+++||.+||.++. ....++..+|++||.|+.+||++||.+....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~-~~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPAGAITMEN-NLAVIDQEKCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred ccccccccchHHHhhCCcCcEEEeC-CcEEEcCCcCCCHHHHHHhCCccccEeeccc
Confidence 4578899999999999999999864 4567889999999999999999999987654
No 142
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.47 E-value=9.3e-08 Score=107.23 Aligned_cols=74 Identities=34% Similarity=0.740 Sum_probs=55.4
Q ss_pred ccceeccccccCcchhHhhCccc---cccccc--ccceeecccCccCccchhhcCcc-CceeecccCCcccccccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVD---AIIGAA--KHMHTIFSKLCTGCDLCIKKCPV-NCISMIEVTPCRTGWDAWSQKK 672 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~---ai~~~~--~~~~~~~~~~C~~Cg~Cv~~CP~-~Ai~~~~~~~~~~~~~~~~~~~ 672 (736)
..+.+|.++|++|+.|+.+||.+ +|.... .....++...|++||.|+.+||+ +||++...... ..+..|..++
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~~-~~~~~~~~~~ 413 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKFG-KPYANWTTHP 413 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEeccCCC-cccccccCCC
Confidence 45678999999999999999974 665532 12345678899999999999999 99998876432 3455555554
Q ss_pred h
Q psy9410 673 A 673 (736)
Q Consensus 673 ~ 673 (736)
.
T Consensus 414 ~ 414 (420)
T PRK08318 414 N 414 (420)
T ss_pred C
Confidence 4
No 143
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=98.47 E-value=1.2e-07 Score=97.67 Aligned_cols=57 Identities=32% Similarity=0.662 Sum_probs=49.0
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+|.++|++|+.|+.+||.+++....+. ..++...|++||.|+.+||++||.+...
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~~~-~~i~~~~C~~Cg~C~~~CP~~AI~~~~~ 199 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVDGK-AFIRLLKCVGCGKCKEACPYNAIHGGLE 199 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecCCc-eEEchhhCCccchHHhhCCCCceecCCc
Confidence 46889999999999999999999875433 4677889999999999999999987643
No 144
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=98.45 E-value=2.9e-08 Score=103.17 Aligned_cols=120 Identities=24% Similarity=0.510 Sum_probs=88.2
Q ss_pred CCccccccCCCceeeEEEEecccccccCcccccccccc--ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHH
Q psy9410 497 NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN--LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGI 574 (736)
Q Consensus 497 ~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~--g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l 574 (736)
+.+|.+++....... .-+|++..+......||+.. -|.|-.|.||-.|.|+ ..||.++.+
T Consensus 140 GpNweddLaG~~~~~---~~Dpn~~~i~~~iy~~fe~tFMmYLPRiCeHCLNPsCv-------------asCPsgaiY-- 201 (513)
T COG1140 140 GPNWEDDLAGEFEKR---AKDPNFEKIQKEIYGQFENTFMMYLPRLCEHCLNPSCV-------------ASCPSGAIY-- 201 (513)
T ss_pred CCChhhhccCCcccc---cCCcCHHHHHHHHHHHHHhHHHHhhHHHHhhcCCcHHh-------------hcCCccccc--
Confidence 566766665443322 23566666555555566654 3678899999999999 899999865
Q ss_pred HHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhhCcccccccccccceeecccCccCc---------cchh
Q psy9410 575 IKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC---------DLCI 645 (736)
Q Consensus 575 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~C---------g~Cv 645 (736)
.....+++.+|+++|.|..+|+..||+.-+.+++.. ...++|+.| ..|.
T Consensus 202 -------------------KReEDGIVLiDQd~CRGwR~CvsgCPYKKvYfNwks---gKsEKCifCyPRiEaGqPtVCS 259 (513)
T COG1140 202 -------------------KREEDGIVLIDQDKCRGWRMCVSGCPYKKVYFNWKS---GKSEKCIFCYPRIEAGQPTVCS 259 (513)
T ss_pred -------------------ccccCceEEeecccccchhhhhcCCCcceeEeeccC---CCcceeEEeccccccCCCccch
Confidence 234568999999999999999999999888877643 345799999 3599
Q ss_pred hcCccCceeecc
Q psy9410 646 KKCPVNCISMIE 657 (736)
Q Consensus 646 ~~CP~~Ai~~~~ 657 (736)
+.| +|-|....
T Consensus 260 eTC-VGriRYlG 270 (513)
T COG1140 260 ETC-VGRIRYLG 270 (513)
T ss_pred hhh-hcceeeee
Confidence 999 55566544
No 145
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.45 E-value=9.4e-08 Score=103.49 Aligned_cols=60 Identities=27% Similarity=0.511 Sum_probs=51.1
Q ss_pred ccceeccccccCcc--hhHhhCcccccccc-cccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.+.+..|++|+ .|+.+||.+||... .++...++.++|++|+.|+.+||++||.+...
T Consensus 174 ~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 174 TFMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred ceEEECCCcCcCCCcccchhhCccCCeEEecCCCeEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 34577899999998 99999999999753 34555688999999999999999999998754
No 146
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.44 E-value=3.5e-08 Score=108.06 Aligned_cols=122 Identities=29% Similarity=0.464 Sum_probs=75.7
Q ss_pred cccCcchhHhhCcccccccc---------cccceeecccCccCccchhhcCccCceeecccCCc--ccccc-cccccchH
Q psy9410 607 KCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPC--RTGWD-AWSQKKAD 674 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~---------~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~--~~~~~-~~~~~~~~ 674 (736)
.|+.|+.|+++||.+.+... ..........+|+.||.|..+||++ |.+...... ...+. .....++.
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~-iplvq~~r~~Ka~i~~~~~~~~~~~ 444 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN-IPLVQYFRQEKAEILAQRQELKKAE 444 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC-CCHHHHHHHHHHHHHHhchhhhccc
Confidence 89999999999999765321 0111112346799999999999998 665544311 00011 11223344
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHhhc
Q psy9410 675 DARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELKN 729 (736)
Q Consensus 675 ~~~~~~~~r~~R~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~ 729 (736)
.+..++..+..|+.+++......+++++++......+.....+++|++++++++.
T Consensus 445 ~~~~rf~~~~~rl~~~~a~r~~~~~~~~~~~~~~~~~~~~~~i~~a~~r~~~~k~ 499 (529)
T COG4656 445 EAKTRFEARTARLEREKAERIPRMKKAAVKRLSFVTAALIDAIAAALERVKEKKA 499 (529)
T ss_pred cccchhhhhhhhhhhhhhcchHHHHHHHhhhhhhhhhhcccchHHHHHHHHHHHH
Confidence 4666778888888887766655555554443222444555677788888877654
No 147
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=98.43 E-value=1.4e-07 Score=98.97 Aligned_cols=60 Identities=20% Similarity=0.480 Sum_probs=50.5
Q ss_pred ccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecccC
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+.+ .+.|++|+.|+.+||.+++.++.+.....+...|++|+.|+.+||.+||.+....
T Consensus 163 p~I~i-~~~C~~C~~C~~~CP~~vi~~~~~~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~~ 222 (263)
T PRK00783 163 PRIEV-SEDCDECEKCVEACPRGVLELKEGKLVVTDLLNCSLCKLCERACPGKAIRVSDDE 222 (263)
T ss_pred ccccc-cccCCchHHHHHhCCccccEecCCeEEEeChhhCCCchHHHHhCCCCceEEEEcC
Confidence 44566 7899999999999999999887655445577789999999999999999987654
No 148
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=98.43 E-value=7.8e-08 Score=103.50 Aligned_cols=58 Identities=38% Similarity=0.813 Sum_probs=45.2
Q ss_pred cceeccccccCcchhHhhCcccccccccc----------c--ceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAK----------H--MHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~----------~--~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.+|.++|++|+.|+.+||.+++..... . ....+...|.+|+.|+.+||++||.+..
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 45789999999999999999998753110 0 1123456899999999999999999864
No 149
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.39 E-value=1.6e-07 Score=89.44 Aligned_cols=52 Identities=33% Similarity=0.799 Sum_probs=45.6
Q ss_pred ccccCc--chhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 606 NKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 606 ~~Ci~C--g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
-.|.+| ..|+++||.+||..+ ++...++.++|+|||.|+.+||.|||.+...
T Consensus 51 v~C~qCedaPC~~vCP~~AI~~~-~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 51 VVCHHCEDAPCAEVCPVGAITRD-DGAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CcCCCCCCcchhhhCchhheeec-CCceEEchhhccCcchhhhcCCcceEEEEee
Confidence 457776 689999999999987 5567789999999999999999999998765
No 150
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=98.37 E-value=2.2e-07 Score=97.19 Aligned_cols=58 Identities=22% Similarity=0.476 Sum_probs=48.3
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecccC
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.++ +.|++|+.|+.+||.+++..+.+.....+...|+.|+.|+.+||++||.+....
T Consensus 165 i~i~-~~C~~C~~C~~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~ 222 (259)
T cd07030 165 IEID-EDCDGCGKCVEECPRGVLELEEGKVVVEDLEDCSLCKLCERACDAGAIRVGWDE 222 (259)
T ss_pred eech-hhCCChHHHHHhCCccceEccCCeeEEeChhhCcCchHHHHhCCCCcEEEEecC
Confidence 3344 789999999999999999886654445577899999999999999999987543
No 151
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.35 E-value=2e-07 Score=97.36 Aligned_cols=59 Identities=22% Similarity=0.535 Sum_probs=50.0
Q ss_pred cceeccccccCcc--hhHhhCcccccccc-cccceeecccCccCccchhhcCccCceeeccc
Q psy9410 600 CAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+.+....|.+|+ .|+.+||.+||... .++...++..+|++|+.|+.+||++||.+...
T Consensus 123 ~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 123 YYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred eEEEecccCCCCCCccchhhCCcCcEEEecCCCeEEECHHHCcchHHHHHhCCCCCcEecCC
Confidence 4567899999999 89999999999643 34556788899999999999999999998653
No 152
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=98.34 E-value=1.6e-07 Score=103.53 Aligned_cols=56 Identities=32% Similarity=0.732 Sum_probs=45.1
Q ss_pred ceeccccccCcchhHhhCcccccccc----cccc---------eeecccCccCccchhhcCccCceeec
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA----AKHM---------HTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~----~~~~---------~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
+.+|.++|++||+|+++||.+++... ..+. ..++...|+.||.|+.+||++||...
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 56899999999999999999998621 1110 23567899999999999999999765
No 153
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=98.32 E-value=2.3e-07 Score=94.60 Aligned_cols=55 Identities=33% Similarity=0.799 Sum_probs=48.2
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeec
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.+++.+.+|+.||.|++.||.+||... ....++...|++|+.|.++||++|+...
T Consensus 187 ~p~v~e~kc~~c~~cv~~cp~~Ai~~~--~~~~I~~~~ci~c~~c~~ac~~gav~~~ 241 (354)
T COG2768 187 KPVVVEEKCYDCGLCVKICPVGAITLT--KVVKIDYEKCIGCGQCMEACPYGAVDQN 241 (354)
T ss_pred CceeeeecccccchhhhhCCCcceecc--cceeechhhccchhhhhhhccCcccccc
Confidence 467788999999999999999999875 3457889999999999999999998643
No 154
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.30 E-value=2.9e-07 Score=102.56 Aligned_cols=55 Identities=31% Similarity=0.816 Sum_probs=47.6
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeec
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
+.+|.++|++|+.|+.+||.++|..+.. ...++...|++|+.|+.+||++||...
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~-~~~i~~~~C~~C~~C~~~CP~~AI~~~ 59 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDR-NYVVKADVCNGCMACVSPCPTGAIDNW 59 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCC-ceEeCcccCcCHHHHHhhcCcccceec
Confidence 5679999999999999999999987544 345678899999999999999999853
No 155
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.29 E-value=3.1e-07 Score=98.86 Aligned_cols=56 Identities=27% Similarity=0.618 Sum_probs=46.5
Q ss_pred ceeccccccCcchhHhhCcc---cccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 601 AIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~---~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..+|.++|++||.|+++||. +++.... ....++...|++||.|+.+||++||....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~-~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFEN-YKVVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccC-CeEEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 46789999999999999997 4565543 34567888999999999999999997654
No 156
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.25 E-value=7.5e-07 Score=91.02 Aligned_cols=57 Identities=23% Similarity=0.600 Sum_probs=48.4
Q ss_pred ccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeec
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
....+|.++|++|+.|+.+||.+++....+ ...++...|++|+.|+.+||++.+...
T Consensus 167 ~~~~id~~~C~~C~~C~~aCP~~ai~~~~~-~~~i~~~~C~~C~~C~~~CP~~~~~~~ 223 (228)
T TIGR03294 167 MTKVVNQGLCMGCGTCAAACPTRAIEMEDG-RPNVNRDRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred eeEEEChhhCcChhHHHHhCCHhhEEEeCC-cEEEChhhccCHHHHHHHcCCCCcchh
Confidence 346789999999999999999999987644 345778899999999999999987653
No 157
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.23 E-value=7.9e-07 Score=89.90 Aligned_cols=58 Identities=24% Similarity=0.628 Sum_probs=44.6
Q ss_pred ceeccccccCcc--hhHhhCcccccccccc-------c-ceeecccCcc-----CccchhhcCcc--Cceeeccc
Q psy9410 601 AIIKENKCIGCT--LCIQSCPVDAIIGAAK-------H-MHTIFSKLCT-----GCDLCIKKCPV--NCISMIEV 658 (736)
Q Consensus 601 ~~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~-------~-~~~~~~~~C~-----~Cg~Cv~~CP~--~Ai~~~~~ 658 (736)
+..+...|+.|+ .|+.+||++||..... + ...++.+.|. +|+.|+++||+ +||.+...
T Consensus 86 ~~~~~~~C~~C~d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~ 160 (213)
T TIGR00397 86 FTPREVPCRMCKDIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPI 160 (213)
T ss_pred ccccCCcCCCCCCchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEecc
Confidence 344567899998 7999999999974311 1 1246678898 99999999999 79987643
No 158
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.22 E-value=3.7e-07 Score=58.22 Aligned_cols=23 Identities=48% Similarity=1.157 Sum_probs=18.8
Q ss_pred ceeccccccCcchhHhhCccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai 623 (736)
+.+|+++|++||.|+.+||++||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 56788888888888888888775
No 159
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.21 E-value=8e-07 Score=95.96 Aligned_cols=56 Identities=27% Similarity=0.636 Sum_probs=47.5
Q ss_pred ccceeccccccCcchhH--hhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCTLCI--QSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~--~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.++.++|++|+.|. .+||.++|..+ ..++..+|++|+.|+.+||++|+++...
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~AI~~~----~~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVPAIKKD----GTLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHhhEecc----ceeChHhCcChHHHHhhCCccceEEeCC
Confidence 45678999999999995 89999998743 2467789999999999999999998653
No 160
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.20 E-value=6.2e-07 Score=111.12 Aligned_cols=61 Identities=28% Similarity=0.604 Sum_probs=47.8
Q ss_pred ccceeccccccCcchhHhhCccccccccc-----------------------cc---ceeecccCccCccchhhcCccC-
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAA-----------------------KH---MHTIFSKLCTGCDLCIKKCPVN- 651 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~-----------------------~~---~~~~~~~~C~~Cg~Cv~~CP~~- 651 (736)
..+.++.++|++||.|+.+||.++|.... .+ ...++...|++||.|+.+||++
T Consensus 676 ~~p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~ 755 (1165)
T TIGR02176 676 NVPVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKE 755 (1165)
T ss_pred ccceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCC
Confidence 34678999999999999999999986420 00 1235678999999999999995
Q ss_pred -ceeecccC
Q psy9410 652 -CISMIEVT 659 (736)
Q Consensus 652 -Ai~~~~~~ 659 (736)
||.+.+..
T Consensus 756 ~Al~m~~~~ 764 (1165)
T TIGR02176 756 KALVMQPLA 764 (1165)
T ss_pred ccccccchh
Confidence 89887654
No 161
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.19 E-value=8.2e-07 Score=90.71 Aligned_cols=57 Identities=25% Similarity=0.637 Sum_probs=47.8
Q ss_pred ceeccccccCcch--hHhhCccccccccc-ccceeecccCccCccchhhcCccCceeecc
Q psy9410 601 AIIKENKCIGCTL--CIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~--C~~~CP~~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..++...|++|+. |+.+||.+||..+. .+...++...|++|+.|+.+||++|+.+.+
T Consensus 87 ~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 87 YRFFRKSCQHCDNAPCVAVCPTGASFKDEETGIVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred eEECchhccCCcCcChHhhCCCCcEEEeCCCCeEEechhhCCcchHHHHhCCCCCcEecC
Confidence 4567899999995 99999999998653 344557888999999999999999987654
No 162
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=98.19 E-value=5.2e-07 Score=93.71 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=43.6
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCcc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~ 650 (736)
+.+|++.|.+|+.|+++||.+||.... ....++.++|++||.|+.+||.
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~-~~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG-KKLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc-ceEEEehhhccCccHHhhhCCh
Confidence 678999999999999999999999765 3456788999999999999993
No 163
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.17 E-value=8.3e-07 Score=93.09 Aligned_cols=58 Identities=29% Similarity=0.700 Sum_probs=49.6
Q ss_pred cceeccccccCcch--hHhhCcc-cccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTL--CIQSCPV-DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~--C~~~CP~-~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
...+....|++|+. |+.+||. +|+....++...++.++|++|+.|+.+||.+|+.+..
T Consensus 85 ~~~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~a~~~~~ 145 (283)
T TIGR01582 85 EWLIRKDGCMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFNIPRYDK 145 (283)
T ss_pred eEEECCccCCCCCCccccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCCCcEEcC
Confidence 34567888999998 9999998 7887665666678899999999999999999998865
No 164
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.14 E-value=8.9e-07 Score=91.33 Aligned_cols=56 Identities=25% Similarity=0.661 Sum_probs=48.8
Q ss_pred eccccccCcch--hHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 603 IKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 603 ~d~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+....|++|+. |+.+||.+|+..+.++...++...|++|+.|+.+||++||.+...
T Consensus 95 ~~~~~C~~C~~p~Cv~~CP~~Ai~~~~~G~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 95 LLPRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred ecchhcCCcCCccCccccCCCCEEECCCCCEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 45789999996 999999999976666667788899999999999999999998654
No 165
>PRK13984 putative oxidoreductase; Provisional
Probab=98.14 E-value=2e-06 Score=101.28 Aligned_cols=63 Identities=32% Similarity=0.606 Sum_probs=50.6
Q ss_pred CCcccceeccccccCcchhHhhCcccccccccc-----------cceeecccCccCccchhhcCccCceeeccc
Q psy9410 596 KSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK-----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 596 ~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~-----------~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..++.+.+|.++|++|+.|+.+||.+++..... ....++...|..|+.|+.+||++||++...
T Consensus 35 ~~~~~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 35 RYRGFHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred cccCccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence 455677889999999999999999998864321 023456778999999999999999998653
No 166
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.14 E-value=1.3e-06 Score=90.72 Aligned_cols=55 Identities=24% Similarity=0.667 Sum_probs=43.2
Q ss_pred eccccccCcc--hhHhhCcccccccccc-------ccee-ecccCcc-----CccchhhcCcc--Cceeecc
Q psy9410 603 IKENKCIGCT--LCIQSCPVDAIIGAAK-------HMHT-IFSKLCT-----GCDLCIKKCPV--NCISMIE 657 (736)
Q Consensus 603 ~d~~~Ci~Cg--~C~~~CP~~ai~~~~~-------~~~~-~~~~~C~-----~Cg~Cv~~CP~--~Ai~~~~ 657 (736)
.+...|..|+ .|+.+||++||..... +... ++...|+ +|+.|+.+||+ +||.+..
T Consensus 94 ~~~~~C~~C~~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 94 ARDIPCEMCEDIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred ecCCcCcCCCCCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 3446799999 6999999999976421 2223 6778999 89999999996 8998764
No 167
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.13 E-value=1.2e-06 Score=86.39 Aligned_cols=57 Identities=25% Similarity=0.659 Sum_probs=50.5
Q ss_pred ceeccccccCc--chhHhhCccccccccc-ccceeecccCccCccchhhcCccCceeecc
Q psy9410 601 AIIKENKCIGC--TLCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 601 ~~~d~~~Ci~C--g~C~~~CP~~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..+-...|.+| -.|+.+||++|..... ++...++.+.|+||+.|+.+||.+|..+..
T Consensus 62 ~~~~~~~C~HC~~ppCv~vCPtgA~~k~~~dGiV~vd~d~CIGC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 62 YYYLSISCMHCEDPPCVKVCPTGALFKREEDGIVLVDKDLCIGCGYCIAACPYGAPQFNP 121 (203)
T ss_pred EEEecccccCCCCCcccccCCCcceEEecCCCEEEecCCcccCchHHHhhCCCCCceeCc
Confidence 45566789999 4799999999998875 888889999999999999999999998876
No 168
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=98.10 E-value=2.2e-06 Score=74.14 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=43.5
Q ss_pred ccceeccccccCc--chhHhhCcccccccccccceeecccCccCccchhhcCccCce
Q psy9410 599 CCAIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 599 ~~~~~d~~~Ci~C--g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
+-+.++.+. ..| ..|+.+||.+|+..+.++...++.+.|++||.|+.+||.+++
T Consensus 23 ~HI~i~~~~-~~~~~k~C~~aCPagA~~~~e~G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 23 PHIVVKADA-DKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred CcEEEcCCC-CchhhhHHHHHCCHhhcEeCCCCCEEEcCCCCCcchhhhhhcCCCCc
Confidence 334555443 223 689999999999876677788899999999999999999975
No 169
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.08 E-value=1.1e-05 Score=86.53 Aligned_cols=78 Identities=12% Similarity=0.002 Sum_probs=41.8
Q ss_pred ccccceeeccccccC---chhHHHHHH-hhcccCCcCCCCCCceEEEEeeecCCe-ecchhhhhhhhhccccCCCCCCCc
Q psy9410 216 IENITHSICTLEFQD---HRPFYEWIL-NKIDKTNFIKRPFPKQYEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPRM 290 (736)
Q Consensus 216 ~~githvirg~e~~~---~~~~~~~l~-~~l~~~~~~~~~~p~~~~f~~l~~~g~-klSKr~~~~~v~~~~~~gwddpr~ 290 (736)
..||+-=--|+||.. +......|. +.||. .+|....|..+.++|. |||||+++.+
T Consensus 232 ~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~------~pP~~~~YE~~~~~g~~kmSsSkG~~~-------------- 291 (360)
T PF01921_consen 232 ALGVDFEPFGKDHASPGGSYDTSKRIAREILGY------EPPVPFPYEFFLDKGGGKMSSSKGNGI-------------- 291 (360)
T ss_dssp HTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----------EEEEE--EEES---------------------------
T ss_pred hcCceeccCCCccCCCCCChhhHHHHHHHHhCC------CCCCCCCeeEEEeCCCcccccCCCCcc--------------
Confidence 355666667888877 777788888 78898 6787777777777766 9999998755
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 291 PTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 291 ~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
|+++.++- +.||+|+.|+...-.
T Consensus 292 -t~~e~L~~-~~PE~lr~l~~~~~P 314 (360)
T PF01921_consen 292 -TPEEWLEY-APPESLRYLMARTKP 314 (360)
T ss_dssp --HHHHHTT-S-HHHHHHHHHCS-T
T ss_pred -CHHHHHHh-cCHHHHHHHHcccCC
Confidence 89998887 899999977666343
No 170
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.08 E-value=2.8e-05 Score=82.23 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-------CcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-------NPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-------d~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
.|||.|||||.-+|+.++...+..|.+.++.|.|. +..+...++...+..++.++|++|+. ..+++||+..
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k--~~i~~qS~~~ 84 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEK--STIFFQSDVP 84 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccc--CEEEEcCCcH
Confidence 58999999999999999999988899999999998 34556678888899999999999965 1366799887
Q ss_pred HHHHHHHHHHHHcCCCcccCCCHHHHHH
Q psy9410 99 DILYKIAEYLIISGDAYVDSQNTEEIYI 126 (736)
Q Consensus 99 ~~~~~~a~~Li~~g~aY~c~~~~e~l~~ 126 (736)
+ +++.+- .+-|.++..+++.
T Consensus 85 ~-~~~l~~-------~l~~~~~~~~l~r 104 (280)
T cd00806 85 E-HYELAW-------LLSCVVTFGELER 104 (280)
T ss_pred H-HHHHHH-------HHhCcCCHHHHHh
Confidence 4 443321 2567777777643
No 171
>PRK09898 hypothetical protein; Provisional
Probab=98.06 E-value=2.4e-06 Score=86.31 Aligned_cols=59 Identities=27% Similarity=0.567 Sum_probs=49.2
Q ss_pred ccceeccccccCcc--hhHhhCcccccccccc-cceeecccCccCccchhhcCccCceeecc
Q psy9410 599 CCAIIKENKCIGCT--LCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~-~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
+.+.++...|++|+ .|+.+||.++|..... +...++..+|++|+.|+.+||.+|+.+..
T Consensus 114 g~~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~~ai~~~~ 175 (208)
T PRK09898 114 GDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNT 175 (208)
T ss_pred CcEEEeCccCCCccCcchhhhCCcceEEeeccCCeEEeccccCCCcCcccccCCCCCCEecC
Confidence 45567889999998 8999999999876532 34567888999999999999999998753
No 172
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.05 E-value=3e-06 Score=83.76 Aligned_cols=52 Identities=25% Similarity=0.726 Sum_probs=44.7
Q ss_pred cccccCcc--hhHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 605 ENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 605 ~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
...|++|+ .|+.+||.+++.... +...++..+|++|+.|+.+||.+||.+..
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~~-~~v~i~~~~C~~C~~C~~~CP~~ai~~~~ 108 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRDK-GFVHVMQERCIGCKTCVVACPYGAMEVVV 108 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEccC-CeEEeChhhCCCcchhhhhCCccCeEeec
Confidence 46899999 999999999998753 44557888999999999999999998764
No 173
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.04 E-value=8.7e-06 Score=98.46 Aligned_cols=90 Identities=30% Similarity=0.400 Sum_probs=66.9
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+==+|+|||.|||||+++.++.+.+||. ..|.-++..-++| +.....++++.|.+.|+.||+
T Consensus 34 ~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~ 113 (842)
T TIGR00396 34 LDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGF 113 (842)
T ss_pred EcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3348999999999999999999999985 3576677665555 333356888999999999997
Q ss_pred C--CCCCCCccccccccHHHHHHHH----HHHHHcCCCcc
Q psy9410 83 N--WDKVKKRIYYASDYFDILYKIA----EYLIISGDAYV 116 (736)
Q Consensus 83 ~--~d~gp~~~~~~Se~~~~~~~~a----~~Li~~g~aY~ 116 (736)
. |+. .+.+++ +.|++.+ .+|.++|++|.
T Consensus 114 ~~Dw~~----~~~T~d--~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 114 SYDWDR----EIATCD--PEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred cccCCC----CcccCC--HHHHHHHHHHHHHHHHCCCeEe
Confidence 5 444 333333 3455544 69999999994
No 174
>PRK13795 hypothetical protein; Provisional
Probab=98.03 E-value=2.2e-06 Score=100.46 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=46.9
Q ss_pred cceeccccccCcchhHhhCccccccccccc-ceeecccCccCccchhhcCccCceee
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKH-MHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~-~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
...++.+.|++|+.|+.+||.++|...... ...++...|+.||.|+.+||++||..
T Consensus 575 ~~v~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 575 RLLRRAAECVGCGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred eEEEccccCCCHhHHHHhCCcccEEeecCCceEEechhhcCChhHHHhhcCCCeeEe
Confidence 356788999999999999999999875432 23567789999999999999999875
No 175
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=98.03 E-value=2e-06 Score=95.53 Aligned_cols=47 Identities=32% Similarity=0.765 Sum_probs=35.8
Q ss_pred cccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+.|++|+.|+.+||.+ +....+ ....|+.|+.|+++||. |+.....
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-i~~~~~-----~~~~Ci~Cg~CidaCp~-a~~~~g~ 276 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-IDIRDG-----LQLECINCGLCIDACDD-VMEKMGK 276 (434)
T ss_pred CCCCCChhhhHHhCCCC-CEeCCC-----CchhChhhhHHHHhCCC-hHHhcCC
Confidence 57899999999999998 333221 23579999999999998 6554443
No 176
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.01 E-value=9e-06 Score=98.08 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=68.6
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
+|+|||.|||||+++.++.+.+||. ..|.-++.+-++| +.....++.+.|.+.|+.||+..|
T Consensus 40 pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~D 119 (805)
T PRK00390 40 FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYD 119 (805)
T ss_pred CCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 5999999999999999999999984 4566666665544 333457888999999999999544
Q ss_pred --CCCCccccccccHHHHHHHHHHHHHcCCCccc
Q psy9410 86 --KVKKRIYYASDYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 86 --~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c 117 (736)
. +..+...+|....+....+|.++|++|..
T Consensus 120 w~~--~~~T~~~~~~~~v~~~f~~L~~~Gliy~~ 151 (805)
T PRK00390 120 WSR--EIATCDPEYYKWTQWIFLKLYEKGLAYRK 151 (805)
T ss_pred CCC--CeecCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 3 12223345555566677899999999943
No 177
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.01 E-value=4e-06 Score=81.31 Aligned_cols=56 Identities=21% Similarity=0.584 Sum_probs=47.6
Q ss_pred eeccccccCcc--hhHhhCcccccccc-cccceeecccCccCccchhhcCccCceeecc
Q psy9410 602 IIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 602 ~~d~~~Ci~Cg--~C~~~CP~~ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+....|++|+ .|+++||.++|... .++...++...|++|+.|+.+||.+||.+..
T Consensus 58 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~C~~C~~aCP~~ai~~~~ 116 (161)
T TIGR02951 58 YYISISCNHCADPACVKNCPTGAMYKREEDGLVLVDQDKCIGCRYCVWACPYGAPQYDP 116 (161)
T ss_pred EEcCccCCCcCCcchHHhCCCCCEEeecCCCcEEECHHhCCCchHHHhhCCCCCcEEcC
Confidence 45678999999 99999999999764 3445667888999999999999999998764
No 178
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=98.00 E-value=2.6e-06 Score=92.80 Aligned_cols=53 Identities=30% Similarity=0.645 Sum_probs=42.4
Q ss_pred ceeccccccCcchhHhhCcccccccccccce-----------eecccCccCccchhhcCccCce
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMH-----------TIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-----------~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
..++.+.|++||.|+.+||.++|.+...... .++...|+.||.|+.+||..++
T Consensus 7 ~vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 3678999999999999999999987543211 1345689999999999998664
No 179
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.99 E-value=3e-06 Score=90.69 Aligned_cols=56 Identities=29% Similarity=0.702 Sum_probs=47.7
Q ss_pred eeccccccCcc--hhHhhCcccccccccc-cceeecccCccCccchhhcCccCceeecc
Q psy9410 602 IIKENKCIGCT--LCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 602 ~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~-~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+....|.+|+ .|+.+||.+||..+.. +...++..+|++|+.|+.+||.++|.+..
T Consensus 106 ~~~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 106 AYIKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccccCCCcCchhhHhhCCCCCEEecccCCcccCCHHHcCcccHHHHhCCccceeccc
Confidence 45678999998 8999999999987643 55567888999999999999999998753
No 180
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.99 E-value=2e-06 Score=70.33 Aligned_cols=45 Identities=40% Similarity=0.908 Sum_probs=33.0
Q ss_pred cccCcchhHhhCccccccccccc----------------ceeecccCcc------CccchhhcCccC
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAKH----------------MHTIFSKLCT------GCDLCIKKCPVN 651 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~~----------------~~~~~~~~C~------~Cg~Cv~~CP~~ 651 (736)
.|+.|++|+++||.+||..+... ....+...|. +||.|+.|||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 49999999999999999865111 0112233455 999999999974
No 181
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.96 E-value=3.7e-06 Score=53.83 Aligned_cols=22 Identities=55% Similarity=1.369 Sum_probs=14.4
Q ss_pred eeccccccCcchhHhhCccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai 623 (736)
.+|.++|++||.|+.+||++||
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ai 23 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDAI 23 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSSE
T ss_pred EEchHHCCCcchhhhhcccccC
Confidence 4566777777777777777665
No 182
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.84 E-value=7.3e-06 Score=99.52 Aligned_cols=55 Identities=22% Similarity=0.605 Sum_probs=40.8
Q ss_pred ccccccC----cchhHhhCcccccc-cc----cccceeecccC-ccCccchhhcCccCceeeccc
Q psy9410 604 KENKCIG----CTLCIQSCPVDAII-GA----AKHMHTIFSKL-CTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 604 d~~~Ci~----Cg~C~~~CP~~ai~-~~----~~~~~~~~~~~-C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
+.++|++ ||.|+.+||.+|+. +. .+....++... |++||.|+.+||++|+.+.+.
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk 943 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK 943 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee
Confidence 4489996 99999999999852 21 11222233344 999999999999999988764
No 183
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.84 E-value=7.8e-06 Score=95.42 Aligned_cols=57 Identities=33% Similarity=0.712 Sum_probs=45.9
Q ss_pred ceeccccccCc------chhHhhCccccccccccc-ceeecccCccCccchhhcCccCceeecc
Q psy9410 601 AIIKENKCIGC------TLCIQSCPVDAIIGAAKH-MHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 601 ~~~d~~~Ci~C------g~C~~~CP~~ai~~~~~~-~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
+.++..+|+.| +.|+.+||.++|....++ ...++...|++|+.|+.+||++||.+..
T Consensus 499 ~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 499 ARQEAARCLSCGNCFECDNCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhhcccCcccccccccchhhhhCChhheeeecCCceEEEecccCcChhHHHhhcCcCceEecc
Confidence 45567777777 899999999998764322 2457788999999999999999999864
No 184
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.81 E-value=7.4e-06 Score=96.86 Aligned_cols=54 Identities=26% Similarity=0.728 Sum_probs=46.3
Q ss_pred eccccccCcch--hHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 603 IKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 603 ~d~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
++...|.+|+. |+.+||.++|.... +...++..+|++|+.|+.+||++||.+..
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~-~~v~~d~~~C~gC~~C~~~CP~~ai~~~~ 106 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS-DSVQLDEQKCIGCKRCAIACPFGVVEMVD 106 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc-cceecChhhCcchhhHhhhcCCCCEEccC
Confidence 46789999996 99999999998754 34566788999999999999999998754
No 185
>PLN02563 aminoacyl-tRNA ligase
Probab=97.80 E-value=3.5e-05 Score=93.84 Aligned_cols=93 Identities=25% Similarity=0.334 Sum_probs=68.9
Q ss_pred EEECCCCCCc-CchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcC
Q psy9410 21 TRFAPEPNGY-LHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLN 81 (736)
Q Consensus 21 ~RfaP~PtG~-lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLG 81 (736)
+==+|.|||. |||||+++.++.+.+||. ..|.-++.+-++| |.....++++.|.+.|+.||
T Consensus 115 ~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG 194 (963)
T PLN02563 115 LDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLG 194 (963)
T ss_pred EeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhC
Confidence 3345999996 999999999999999985 4577777776665 33345688899999999999
Q ss_pred C--CCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc
Q psy9410 82 F--NWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 82 i--~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c 117 (736)
+ +|+. .++++ +|....+....+|.++|++|..
T Consensus 195 ~s~DW~r----~~~T~dp~y~~~~q~~F~~L~~~GliY~~ 230 (963)
T PLN02563 195 FSYDWDR----EISTTEPEYYKWTQWIFLQLLKRGLAYQA 230 (963)
T ss_pred cEeeCCC----CeecCCHHHHHHHHHHHHHHHHCCCEEee
Confidence 6 5655 44443 3333344555789999999943
No 186
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.78 E-value=6.3e-06 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.925 Sum_probs=20.2
Q ss_pred eecccCccCccchhhcCccCce
Q psy9410 632 TIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
.+++++|++||.|+.+||.+||
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcChhHHHHhcchhcC
Confidence 5788999999999999999986
No 187
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.76 E-value=1.2e-05 Score=90.41 Aligned_cols=58 Identities=29% Similarity=0.563 Sum_probs=45.6
Q ss_pred cceeccccccCcchhHh--hCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 600 CAIIKENKCIGCTLCIQ--SCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
...+|.++|+||+.|+. .||.-.+... .....+++..|++||.|+++||..||.....
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~~k~~id~~~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-FKKARIDPSSCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-CCceeecccccccchhhhhcCchhheecccc
Confidence 47889999999999994 4995333222 3456788889999999999999999986543
No 188
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.75 E-value=1.3e-05 Score=86.68 Aligned_cols=60 Identities=35% Similarity=0.835 Sum_probs=47.3
Q ss_pred cceecccccc--Ccc-hhHhhCccc-----cccccc-ccceeecccCccCccchhhcCccCceeecccC
Q psy9410 600 CAIIKENKCI--GCT-LCIQSCPVD-----AIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 600 ~~~~d~~~Ci--~Cg-~C~~~CP~~-----ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.++|.++|. .|+ .|.+.||.. +|.++. .+...+.+..|+|||.|+..||.+||++...+
T Consensus 5 iAvvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 5 IAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVKKCPFDAISIVNLP 73 (591)
T ss_pred EEEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCceeEhhhhccchhhhccCCcceEEEecCc
Confidence 4678889996 475 799999973 555543 34567888899999999999999999987654
No 189
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=97.73 E-value=9.9e-06 Score=87.66 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=40.7
Q ss_pred ccCcchhHhhCccccccccc---ccceeecccCccCccchhhcCccCceeec
Q psy9410 608 CIGCTLCIQSCPVDAIIGAA---KHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~ai~~~~---~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
|..|+.|+.+||.+||.+.. ++...++..+|++||.|+.+||++|+...
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~ 234 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDP 234 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCC
Confidence 45569999999999998732 34567899999999999999999998633
No 190
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.70 E-value=2.1e-05 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.985 Sum_probs=19.7
Q ss_pred eecccCccCccchhhcCccCcee
Q psy9410 632 TIFSKLCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~Ai~ 654 (736)
.++.+.|++||.|+.+||.+||+
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSSEE
T ss_pred EEchHHCCCcchhhhhcccccCC
Confidence 46778999999999999999985
No 191
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.70 E-value=1.7e-05 Score=95.94 Aligned_cols=57 Identities=23% Similarity=0.609 Sum_probs=42.5
Q ss_pred eeccccccCc----chhHhhCcccc---ccccc---ccceeecccCccCccchhhcCccCceeeccc
Q psy9410 602 IIKENKCIGC----TLCIQSCPVDA---IIGAA---KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~C----g~C~~~CP~~a---i~~~~---~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.-+.++|.+| |.|+.+||.+| |.... ..........|++||.|+.+||+++-.+.+.
T Consensus 882 ~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~~~~py~dk 948 (1019)
T PRK09853 882 AQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPWNGKPYKDK 948 (1019)
T ss_pred cccccccCCcccccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCCCCCccccc
Confidence 4567899999 99999999999 33211 1122333589999999999999998666544
No 192
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00026 Score=78.34 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=52.7
Q ss_pred ccceeeccccccCchhHHHHHHh----hcccCCcCCCCCCceEEEEeeecCC-eecchhhhhhhhhccccCCCCCCCccc
Q psy9410 218 NITHSICTLEFQDHRPFYEWILN----KIDKTNFIKRPFPKQYEFSRLNLTH-TITSKRKLLKLLEKKIVDGWDDPRMPT 292 (736)
Q Consensus 218 githvirg~e~~~~~~~~~~l~~----~l~~~~~~~~~~p~~~~f~~l~~~g-~klSKr~~~~~v~~~~~~gwddpr~~t 292 (736)
|||.---|+||......|+-... -+|+ .+|..+.|..+.+.| .+||||+++.+ |
T Consensus 229 gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~------~pP~~~~YE~i~lkg~~~mSsSkG~~i---------------~ 287 (521)
T COG1384 229 GVDFEPFGKDHAAAGGSYDTGKRIAREIFGY------EPPVPFVYEWILLKGGGKMSSSKGNVI---------------S 287 (521)
T ss_pred CcccccCCcccccccCchHHHHHHHHHhcCC------CCCCCCceEEEEecCCcccccCCCcEE---------------c
Confidence 44444567787776666654333 4455 556666566666665 79999998765 8
Q ss_pred HHHHHHcCCCHHHHHHHHHHcCcc
Q psy9410 293 LIGMRRRGYTPESIKLFCKRIGVS 316 (736)
Q Consensus 293 l~~l~~~G~~peai~~~~~~~g~s 316 (736)
+++.++- +.||.||.|+.....+
T Consensus 288 ~~dwlev-~~pE~lry~~~r~kP~ 310 (521)
T COG1384 288 LSDWLEV-APPEVLRYLIARTKPN 310 (521)
T ss_pred HHHHHHh-cCHhHeeeeeeecCCC
Confidence 9998887 7999999666665343
No 193
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.67 E-value=8.7e-05 Score=90.78 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=66.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------------cc----------cc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------------PL----------KE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------------~~----------r~ 65 (736)
+==+|+|||.|||||+++.++.+.++|. ..|.-++..-+.| +. ..
T Consensus 41 ~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~ 120 (861)
T TIGR00392 41 HDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREF 120 (861)
T ss_pred ecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHH
Confidence 5557999999999999999999999984 4576666654433 10 12
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccccccHHHHHH----HHHHHHHcCCCccc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYASDYFDILYK----IAEYLIISGDAYVD 117 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~Se~~~~~~~----~a~~Li~~g~aY~c 117 (736)
..++++.+.+.|+.||+ +|+. +|.+.+ +.|++ ...+|.++|++|..
T Consensus 121 ~~~~~~~~~~~~~~lG~~~dw~~----~y~T~~--p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 121 ALKQIEEQREQFQRLGVWGDWEN----PYKTMD--PSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHHHHHhCceecCCC----CcCcCC--HHHHHHHHHHHHHHHHCCCEeec
Confidence 34678888999999999 7776 655554 34444 44789999999953
No 194
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.67 E-value=1.8e-05 Score=92.74 Aligned_cols=51 Identities=37% Similarity=0.890 Sum_probs=40.8
Q ss_pred ccceeccccccCcchhHh--hCcccccccccccceeecccCccCccchhhcCccCce
Q psy9410 599 CCAIIKENKCIGCTLCIQ--SCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
..+.+|.++|++|+.|++ +||... .. ++...++. .|++||.|+.+||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~~--~~-~~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAIE--PE-DKEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCcc--cc-CCcceeCC-CCcCHHHHHhhCccccC
Confidence 457889999999999999 999533 22 22345555 79999999999999986
No 195
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.65 E-value=1.1e-05 Score=87.85 Aligned_cols=57 Identities=30% Similarity=0.673 Sum_probs=43.5
Q ss_pred eeccccccCcchhHhhCcccccc-------------cc----cccceeecccCccCccchhhcCccCceeecccC
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAII-------------GA----AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~-------------~~----~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
.+| ++|++||.|+.+||..+.. +. -.....++...|+.||.|..+||.+|+.+....
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred ccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCC
Confidence 456 9999999999999985331 11 111235678899999999999999999887654
No 196
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=6.5e-05 Score=88.72 Aligned_cols=87 Identities=30% Similarity=0.403 Sum_probs=64.9
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhc--CCEEEEE---e-------------eCCCcccccHHHHHHHHHHHHHcCCC--C
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKY--NGLCNLR---F-------------DDTNPLKENKEYVNSIIKTIKWLNFN--W 84 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~--~G~~ilR---~-------------eDtd~~r~~~~~~~~i~~dl~wLGi~--~ 84 (736)
|.|||.||+||+|+..+.+.+||.+ +|.=||. + ..+||......+++.+.+.|+.||+. |
T Consensus 43 PYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW 122 (814)
T COG0495 43 PYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDW 122 (814)
T ss_pred CCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCcccc
Confidence 9999999999999999999999842 3433332 2 44578888899999999999999875 5
Q ss_pred CCCCCccccccccHHHHHHHH----HHHHHcCCCccc
Q psy9410 85 DKVKKRIYYASDYFDILYKIA----EYLIISGDAYVD 117 (736)
Q Consensus 85 d~gp~~~~~~Se~~~~~~~~a----~~Li~~g~aY~c 117 (736)
+. ...+++= .|+.+. -+|.++|+||..
T Consensus 123 ~R----ef~T~Dp--~Yyk~~QW~F~kL~ekGL~y~~ 153 (814)
T COG0495 123 RR----EFATCDP--EYYKWIQWQFLKLYEKGLAYRK 153 (814)
T ss_pred cc----ceecCCc--cHHHHHHHHHHHHHHCCCEEec
Confidence 54 3333332 255555 588899999943
No 197
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.63 E-value=9.4e-05 Score=91.59 Aligned_cols=93 Identities=24% Similarity=0.271 Sum_probs=69.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc---------------------------------cc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL---------------------------------KE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~---------------------------------r~ 65 (736)
+==+|+|||.||||||++.++.+.++|. ..|.-++.+-++|.. ..
T Consensus 65 ~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w 144 (995)
T PTZ00419 65 VLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEW 144 (995)
T ss_pred EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHH
Confidence 4446999999999999999999999985 458888888777722 01
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccc--cccHHHHHHHHHHHHHcCCCccc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYA--SDYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~c 117 (736)
..++...|.+.|+.||+ +|+. .+++ .++....+....+|.++|++|..
T Consensus 145 ~~~~~~~~~~~~~~lG~~~DW~~----~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 196 (995)
T PTZ00419 145 KDKHGNNICNQLRRLGSSLDWSR----EVFTMDEQRSKAVKEAFVRLYEDGLIYRD 196 (995)
T ss_pred HHHHHHHHHHHHHHhCceeeCCC----CcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 25777889999999996 4555 4444 33444556666899999999943
No 198
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.61 E-value=8.6e-05 Score=90.89 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=66.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------------ccc-------ccHHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------------PLK-------ENKEY 69 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------------~~r-------~~~~~ 69 (736)
+==+|++||.||||||++.++.+.++|. ..|..++.+-+.| +.. ...++
T Consensus 54 ~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~ 133 (912)
T PRK05743 54 HDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQ 133 (912)
T ss_pred eCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHH
Confidence 3346999999999999999999999984 3466666553333 221 23566
Q ss_pred HHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 70 VNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 70 ~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
++.+.++++.||+ +|+. +|++.+ +.........+|.++|++|.
T Consensus 134 ~~~~~~~~~~lG~~~dw~~----~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 134 VDIQREDFKRLGVLGDWDN----PYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHhCCcccCCC----CcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7889999999999 7886 555543 33334455588999999994
No 199
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.60 E-value=2.3e-05 Score=75.85 Aligned_cols=65 Identities=28% Similarity=0.590 Sum_probs=44.0
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+....|..|+ .|+ ++||+++.... ................+|..+||-||.|+
T Consensus 52 l~~~~CIgC~--lCa-------------~iCP~~aI~m~------------~~~~~~~g~~~~~~~~In~grCIfCg~C~ 104 (172)
T COG1143 52 LDRDKCIGCG--LCA-------------NICPANAITME------------TAERKVDGRKKPKRPDINLGRCIFCGLCV 104 (172)
T ss_pred ccccCCcchh--HHH-------------hhCCcCceEEE------------EcccCCCCccccccceeccccccccCchh
Confidence 4456699999 466 89999985411 00000011122345688999999999999
Q ss_pred hhCccccccccc
Q psy9410 616 QSCPVDAIIGAA 627 (736)
Q Consensus 616 ~~CP~~ai~~~~ 627 (736)
++||++||.+..
T Consensus 105 e~CPt~Al~~t~ 116 (172)
T COG1143 105 EVCPTGALVLTP 116 (172)
T ss_pred hhCchhhhcCCc
Confidence 999999998654
No 200
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.60 E-value=8.6e-05 Score=91.90 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=68.0
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc---------c------------------------c
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL---------K------------------------E 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~---------r------------------------~ 65 (736)
+==||++||.|||||+++.++.+.++|. ..|.-++.+-++|.. + .
T Consensus 53 ~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~ 132 (1052)
T PRK14900 53 VLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAW 132 (1052)
T ss_pred ecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHH
Confidence 4446999999999999999999999985 457777777777611 0 1
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccc--cccHHHHHHHHHHHHHcCCCcc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYA--SDYFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~ 116 (736)
..++.+.|.+.++.||+ +|+. ++++ .++.........+|.++|++|.
T Consensus 133 ~~~~~~~~~~~~~~lG~s~Dw~~----~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 133 KEQYGSRIGEQHKALGASLDWQR----ERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHhchheecCC----CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 24667888999999996 4554 4444 4444445566689999999994
No 201
>PLN02943 aminoacyl-tRNA ligase
Probab=97.60 E-value=0.00012 Score=89.92 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=68.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc-----------------------cc---------c
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL-----------------------KE---------N 66 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~-----------------------r~---------~ 66 (736)
+=-||++||.||||||++..+.+.++|. ..|.-++.+-++|.. |+ .
T Consensus 93 ~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~ 172 (958)
T PLN02943 93 PMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWK 172 (958)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHH
Confidence 6668999999999999999999999985 468778877777611 00 1
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 67 KEYVNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 67 ~~~~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
.++.+.|.+.++.||+ +|+. ++++.+ +.......-.+|.++|++|..
T Consensus 173 ~~~~~~~~~~~~~lG~s~Dw~~----~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 223 (958)
T PLN02943 173 EKYGGTITNQIKRLGASCDWSR----ERFTLDEQLSRAVVEAFVRLHEKGLIYQG 223 (958)
T ss_pred HHHHHHHHHHHHHhCcceecCC----CcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 4667899999999998 5654 555544 333334455789999999943
No 202
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=97.58 E-value=7.5e-06 Score=64.56 Aligned_cols=47 Identities=34% Similarity=0.722 Sum_probs=22.2
Q ss_pred cccccCcchhHhhCcccccccc----cccc--e--eecccCccCccchhhcCccC
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGA----AKHM--H--TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~----~~~~--~--~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.++|++||.|..+||....... .... . ......|+.||.|+.+||.+
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNTGRFSHPPRDRRSAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHHHHHHTSTTS--HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHHccCccChHHHChhhhcccccccCcchhHHHhhcccccCCcCcCCccCcCccc
Confidence 4689999999999996432210 0000 0 00126899999999999987
No 203
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=97.57 E-value=5e-05 Score=53.28 Aligned_cols=34 Identities=53% Similarity=1.099 Sum_probs=24.4
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCC
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTG 569 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~ 569 (736)
+|..+|+.||+++|+++|++|+.+......|+.+
T Consensus 2 LP~~nCg~CG~~~C~~fA~ai~~g~~~~~~C~~~ 35 (35)
T PF04060_consen 2 LPGTNCGACGYPTCRAFAEAIVRGEAKINDCPPL 35 (35)
T ss_dssp S-S----TTSSSSHHHHHHHHHCTSS-GGC-TT-
T ss_pred CCCCcCCCCCCccHHHHHHHHHcCCCCcccCCCc
Confidence 5778999999999999999999999999999863
No 204
>PRK13409 putative ATPase RIL; Provisional
Probab=97.57 E-value=3.5e-05 Score=89.98 Aligned_cols=60 Identities=35% Similarity=0.844 Sum_probs=47.6
Q ss_pred cceecccccc--Ccc-hhHhhCccc-----ccccc-cccceeecccCccCccchhhcCccCceeecccC
Q psy9410 600 CAIIKENKCI--GCT-LCIQSCPVD-----AIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 600 ~~~~d~~~Ci--~Cg-~C~~~CP~~-----ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.++|.++|. .|+ .|.+.||.. +|.++ ..+...+.+..|+|||.||..||.+||++...+
T Consensus 4 ~~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p 72 (590)
T PRK13409 4 IAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFDAISIVNLP 72 (590)
T ss_pred EEEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhccccccccccCCcceEEEeeCc
Confidence 4678889995 585 699999973 55553 344567788899999999999999999987664
No 205
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.53 E-value=2.6e-05 Score=61.90 Aligned_cols=25 Identities=52% Similarity=1.164 Sum_probs=18.0
Q ss_pred ceeccccccCcchhHhhCcc-ccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPV-DAIIG 625 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~-~ai~~ 625 (736)
+.++.+.|+|||.|+.+||+ +||.+
T Consensus 34 ~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 34 VPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp SECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EEeccccCcCcCcccccCCCccCCCC
Confidence 45678999999999999996 99974
No 206
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.52 E-value=3.8e-05 Score=47.35 Aligned_cols=20 Identities=45% Similarity=1.164 Sum_probs=17.3
Q ss_pred ceeccccccCcchhHhhCcc
Q psy9410 601 AIIKENKCIGCTLCIQSCPV 620 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~ 620 (736)
+.+|.++|+||+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 56899999999999999984
No 207
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.46 E-value=0.00021 Score=88.22 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=67.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC---------------c------------------ccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN---------------P------------------LKE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd---------------~------------------~r~ 65 (736)
+==||+|||.||+||+++..+.+.++|. ..|.-+++.-+.| . ...
T Consensus 46 ~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~ 125 (975)
T PRK06039 46 YDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRES 125 (975)
T ss_pred eCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHH
Confidence 3336999999999999999999999985 4577777664443 0 112
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCCCCccccccccHHHHHH----HHHHHHHcCCCccc
Q psy9410 66 NKEYVNSIIKTIKWLN--FNWDKVKKRIYYASDYFDILYK----IAEYLIISGDAYVD 117 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLG--i~~d~gp~~~~~~Se~~~~~~~----~a~~Li~~g~aY~c 117 (736)
..++.+.+.+.++.|| ++|+. +|++.+ +.|++ .-.+|.++|++|..
T Consensus 126 ~~~~~~~~~~~~~rlG~~~Dw~~----~y~T~d--~~y~~~v~~~F~~l~~kGliyr~ 177 (975)
T PRK06039 126 VLRYTDEWEEYTERLGRWVDFDN----PYKTLD--NEYMESVWWALKQLYDKGLLYKG 177 (975)
T ss_pred HHHHHHHHHHHHHHhCceeecCC----CcCcCC--HHHHHHHHHHHHHHHHCCCEEec
Confidence 4577788999999999 57876 666655 33444 44799999999953
No 208
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=7.1e-05 Score=88.95 Aligned_cols=53 Identities=26% Similarity=0.684 Sum_probs=45.5
Q ss_pred ccccccCcch--hHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 604 KENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 604 d~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
....|++|+. |+.+||.+||..... ...++..+|++|+.|+.+||.+||.+..
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~~-~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNGAISHVDD-SIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCCChhHhhhCCccceeccCC-eEEEecccccCcChhcccCCccCeeecc
Confidence 4678999985 999999999987543 4567889999999999999999998754
No 209
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=97.45 E-value=0.0002 Score=89.06 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCc---------c------------------------cccHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNP---------L------------------------KENKE 68 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~---------~------------------------r~~~~ 68 (736)
||++||.||||||++.++.+.++|. ..|.-+++.-++|- + ....+
T Consensus 110 PPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~ 189 (1205)
T PTZ00427 110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLK 189 (1205)
T ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHH
Confidence 6999999999999999999999985 46888888877661 0 01246
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLN--FNWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLG--i~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
|.+.+.+.++.|| ++|+. +|++.+ +.........+|.++|++|.-
T Consensus 190 ~~~~~~~~~~rlG~~iDw~~----~y~T~d~~~~~~v~~~f~~L~ekGlIYr~ 238 (1205)
T PTZ00427 190 YSNEWVKTVERIGRWIDFKN----DYKTMDKTFMESVWWVFSELYKNNYVYKS 238 (1205)
T ss_pred HHHHHHHHHHHhCcEEecCC----CcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 6788899999999 78986 666544 333344555889999999943
No 210
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=97.43 E-value=5.5e-05 Score=85.06 Aligned_cols=49 Identities=29% Similarity=0.645 Sum_probs=36.5
Q ss_pred eccccccCcchhHhhCccccccc---------ccccceeecccCccCccchhhcCccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIG---------AAKHMHTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~---------~~~~~~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.....|++||.|+.+||.+.+.. +.+.....+...|+.||.|..+||.+
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 46789999999999999875421 11111233456899999999999997
No 211
>PLN02381 valyl-tRNA synthetase
Probab=97.43 E-value=0.00025 Score=87.77 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=67.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCcc---------------------------------cc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPL---------------------------------KE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~---------------------------------r~ 65 (736)
+==+|++||.||||||++.++.+.++|. ..|.-++..-++|-. ..
T Consensus 133 ~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~ 212 (1066)
T PLN02381 133 VLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKW 212 (1066)
T ss_pred EeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHH
Confidence 4446999999999999999999999985 457777766666510 11
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
..++.+.|.+.++.||+ +|+. +|++.+ +.......-.+|.++|++|.-
T Consensus 213 ~~~~~~~~~~q~~~lG~s~Dw~~----~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 213 KDEYGGTILNQLRRLGASLDWSR----ECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHhCchhccCC----ccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 34677888999999996 5665 555544 223334455789999999954
No 212
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.38 E-value=0.00031 Score=82.50 Aligned_cols=92 Identities=26% Similarity=0.328 Sum_probs=60.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC--------------------------c-------ccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN--------------------------P-------LKE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd--------------------------~-------~r~ 65 (736)
+==||++||.||+|||++..+-+.++|. ..|.-++..=..| . ...
T Consensus 28 ~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (601)
T PF00133_consen 28 HDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREW 107 (601)
T ss_dssp EE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHH
T ss_pred EeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcch
Confidence 3346999999999999999999999984 4566666552222 0 011
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
..++.+.+.++++.||+ +|+. +|++.+ +.........+|.++|++|.
T Consensus 108 ~~~~~~~~~~~~~~lG~~~Dw~~----~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 108 AEEFIEEQKEQFKRLGVSIDWDR----EYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHTT--SECTC----EEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhheeeecccCC----ceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 35777889999999997 5665 544433 33333445589999999995
No 213
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.34 E-value=0.00036 Score=85.81 Aligned_cols=92 Identities=23% Similarity=0.323 Sum_probs=66.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------------cccc-------cHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------------PLKE-------NKE 68 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------------~~r~-------~~~ 68 (736)
+==||++||.||||||.+.++.+.++|. ..|.-++.+-++| +... ..+
T Consensus 37 ~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~ 116 (974)
T PLN02843 37 HDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKK 116 (974)
T ss_pred eCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHH
Confidence 3446999999999999999999999985 3466666554444 1111 245
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 69 YVNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 69 ~~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
+++.+.+.++.||+ +|+. +|++.+ +.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~lG~~~Dw~~----~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 117 TVDTQRESFKRYGVWGDWEN----PYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHhCCceecCC----CCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 67778999999999 8886 555543 33333455588999999994
No 214
>PLN02882 aminoacyl-tRNA ligase
Probab=97.34 E-value=0.0003 Score=87.73 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------ccc----------------ccHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------PLK----------------ENKE 68 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------~~r----------------~~~~ 68 (736)
||++||.+||||+++.++.+.++|. ..|.-+++.-++| ... ...+
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 6999999999999999999999985 4577788776655 000 1246
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLN--FNWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLG--i~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
|.+.+.+.++.|| ++|+. .|++.+ +.+.......+|.++|++|.-
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~----~y~T~d~~~~~~v~~~f~~l~~kGliyr~ 174 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFEN----DYKTMDPKFMESVWWVFKQLFEKGLVYKG 174 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCC----CcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 7788899999999 78886 666544 333344455899999999943
No 215
>KOG0435|consensus
Probab=97.30 E-value=0.00012 Score=82.22 Aligned_cols=92 Identities=28% Similarity=0.362 Sum_probs=67.4
Q ss_pred EEEECCCCCCcCchhHHHHHHHHHHHHHhc--CCEEEEEe----------------eCCCcccccHHHHHHHHHHHHHcC
Q psy9410 20 ITRFAPEPNGYLHIGHAKSIFINFELAYKY--NGLCNLRF----------------DDTNPLKENKEYVNSIIKTIKWLN 81 (736)
Q Consensus 20 v~RfaP~PtG~lHiGhar~al~n~~~Ar~~--~G~~ilR~----------------eDtd~~r~~~~~~~~i~~dl~wLG 81 (736)
|.=-=|.|+|-|||||.|-..+.+.+||.| +|-=|+.- .+++|.......++.+.+-|..||
T Consensus 61 iLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg 140 (876)
T KOG0435|consen 61 ILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLG 140 (876)
T ss_pred EEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcC
Confidence 433338999999999999999999999854 35444432 456777778889999999999999
Q ss_pred CC--CCCCCCccccccccHHHHHHHH----HHHHHcCCCccc
Q psy9410 82 FN--WDKVKKRIYYASDYFDILYKIA----EYLIISGDAYVD 117 (736)
Q Consensus 82 i~--~d~gp~~~~~~Se~~~~~~~~a----~~Li~~g~aY~c 117 (736)
+. ||. + -|.--+.||.+- -+|.++|+||..
T Consensus 141 ~~FDWdr----E--iSTC~PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 141 ISFDWDR----E--ISTCEPDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred ccccccc----c--cccCCcchhHHHHHHHHHHHHhhhhhcc
Confidence 85 554 2 233334566554 578899999943
No 216
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.28 E-value=0.0003 Score=86.43 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=60.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEe---e--C----------------------------------
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRF---D--D---------------------------------- 59 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~---e--D---------------------------------- 59 (736)
+==+|+|||.|||||+++.++.+.+||. ..|.=+|.. + +
T Consensus 30 ~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~ 109 (938)
T TIGR00395 30 TMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLK 109 (938)
T ss_pred ecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHh
Confidence 4445999999999999999999999984 234444331 1 1
Q ss_pred -CCcccccHHHHHHHHHHHHHcCCC--CCCCCCccccccccHHHHHH----HHHHHHHcCCCcc
Q psy9410 60 -TNPLKENKEYVNSIIKTIKWLNFN--WDKVKKRIYYASDYFDILYK----IAEYLIISGDAYV 116 (736)
Q Consensus 60 -td~~r~~~~~~~~i~~dl~wLGi~--~d~gp~~~~~~Se~~~~~~~----~a~~Li~~g~aY~ 116 (736)
.+|......|...+.++|+.||+. |+. .+.+.+ +.|.+ ...+|.++|++|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r----~~~T~d--p~y~~~v~~~f~~L~e~G~iy~ 167 (938)
T TIGR00395 110 FTDPEYIVEYFSREAESACKSMGYSIDWRR----SFKTTD--PYYDRFIEWQMNKLKELGLIVK 167 (938)
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCceEECCC----CccCCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 111222356667899999999985 554 455544 34444 3478999999994
No 217
>PRK13984 putative oxidoreductase; Provisional
Probab=97.28 E-value=0.00015 Score=85.43 Aligned_cols=25 Identities=24% Similarity=0.701 Sum_probs=22.2
Q ss_pred ceeccccccCcchhHhhCccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..+|...|+.|+.|+.+||++||..
T Consensus 81 ~~i~~~~c~~c~~c~~~Cp~~Ai~~ 105 (604)
T PRK13984 81 PVIDYGRCSFCALCVDICTTGSLKM 105 (604)
T ss_pred cccCcccCcCcchHHhhCCcCcEEe
Confidence 5678899999999999999998765
No 218
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00052 Score=81.18 Aligned_cols=93 Identities=22% Similarity=0.245 Sum_probs=67.5
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------------cccc---------c
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------------PLKE---------N 66 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------------~~r~---------~ 66 (736)
.==||++||.||||||.+..+-+.++|. ..|.=+|=+-+|| ..|+ +
T Consensus 38 ~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk 117 (877)
T COG0525 38 DTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWK 117 (877)
T ss_pred eCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHH
Confidence 4447999999999999999999999985 3466666555555 1121 3
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCccccc--cccHHHHHHHHHHHHHcCCCccc
Q psy9410 67 KEYVNSIIKTIKWLNFN--WDKVKKRIYYA--SDYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 67 ~~~~~~i~~dl~wLGi~--~d~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~c 117 (736)
+++...|.+-|+.||+. |+. .+++ -++....++.-.+|.++|..|..
T Consensus 118 ~e~~~~I~~Q~~rLG~S~DWsr----E~fTmD~~~s~av~~~Fv~Ly~~GlIYr~ 168 (877)
T COG0525 118 EESGGTIREQLRRLGVSVDWSR----ERFTMDPGLSRAVQEAFVRLYEKGLIYRG 168 (877)
T ss_pred HHHHHHHHHHHHHhCCCccccc----ccccCCHHHHHHHHHHHHHHHHCCceeec
Confidence 68889999999999986 443 4444 33344556667899999999943
No 219
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=97.22 E-value=0.00019 Score=61.39 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=50.4
Q ss_pred cccceeccccccCcc--hhHhhCcccccccccccceeecccCccCccchhhcCcc-Cceeec
Q psy9410 598 RCCAIIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISMI 656 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~-~Ai~~~ 656 (736)
+.++..|...|..|. .|+.+||.+.-...+++...++...|..||.|--+||. +.|.+.
T Consensus 25 pHI~v~~~~~~~~~~~~~l~~aCPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~~~~i~W~ 86 (99)
T COG2440 25 PHIIVKDPDDCQECEDKPLIKACPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPHSGLIQWR 86 (99)
T ss_pred CcEecCCchhhhhccchhhhhcCCHHHeeECCCCcEEEeecCeeeccceeEecCCCcceEEe
Confidence 445666789999998 99999999998877767778889999999999999998 777664
No 220
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=97.20 E-value=0.00052 Score=84.40 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=64.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-------------------------ccc-------cc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-------------------------PLK-------EN 66 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-------------------------~~r-------~~ 66 (736)
+==||++||.||||||++.++.+.++|. ..|.-++.+-+.| +.. ..
T Consensus 59 ~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a 138 (961)
T PRK13804 59 HDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYA 138 (961)
T ss_pred eCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHH
Confidence 3346999999999999999999999985 3465555543333 111 12
Q ss_pred HHHHHHHHHHHHHcCCC--CCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 67 KEYVNSIIKTIKWLNFN--WDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 67 ~~~~~~i~~dl~wLGi~--~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
.++++.+.++++.||+. |+. +|.+.+ +.........+|.++|++|.
T Consensus 139 ~~~i~~~~~~~~rlG~~~Dw~~----~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 139 LSWIDVQREEFKRLGVLGDWDN----PYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHhCceecCCC----CcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 45677889999999985 775 555544 22333445578999999994
No 221
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.19 E-value=0.00012 Score=41.14 Aligned_cols=15 Identities=47% Similarity=1.444 Sum_probs=8.4
Q ss_pred ccCccchhhcCccCc
Q psy9410 638 CTGCDLCIKKCPVNC 652 (736)
Q Consensus 638 C~~Cg~Cv~~CP~~A 652 (736)
|++|+.|+++||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 455555555555554
No 222
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=97.16 E-value=8.8e-05 Score=86.66 Aligned_cols=53 Identities=30% Similarity=0.587 Sum_probs=37.7
Q ss_pred cceeccccccCcchhHhhCccccc-----ccccccc---eeecccCccCccchhhcCccCc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAI-----IGAAKHM---HTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai-----~~~~~~~---~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
.+....++|++|+.|+.+||.+.. .....+. .......|++||.|+.+||++.
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 445577899999999999998642 1111110 1123468999999999999983
No 223
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.14 E-value=0.00021 Score=70.54 Aligned_cols=60 Identities=27% Similarity=0.541 Sum_probs=40.7
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+....|..|+. |+ .+||+++..... . .......+.++...|++||.|+
T Consensus 35 ~d~~~Ci~Cg~--Cv-------------~aCP~~Ai~~~~----~-------------~~~~~~~~~~~~~~C~~Cg~C~ 82 (181)
T PRK08222 35 LMPSQCIACGA--CT-------------CACPANALTIQT----D-------------DQQNSRTWQLYLGRCIYCGRCE 82 (181)
T ss_pred eChhhCcchhH--HH-------------HhCCccceEccc----c-------------cccCccceeeccCcCcCCCCcc
Confidence 45578999984 76 889987642100 0 0011123466788999999999
Q ss_pred hhCccccccccc
Q psy9410 616 QSCPVDAIIGAA 627 (736)
Q Consensus 616 ~~CP~~ai~~~~ 627 (736)
.+||++||....
T Consensus 83 ~~CPt~AI~~~~ 94 (181)
T PRK08222 83 EVCPTRAIQLTN 94 (181)
T ss_pred cccCcCeEEecc
Confidence 999999998653
No 224
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.10 E-value=0.00025 Score=70.02 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=31.9
Q ss_pred ceeccccccCcchhHhhCccccccccccc------------ceeecccCccCccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKH------------MHTIFSKLCTGCDL 643 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~------------~~~~~~~~C~~Cg~ 643 (736)
..++...|++||.|+.+||.+||.+.... ...+....|..||.
T Consensus 68 ~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~~~~~~l~~~~~~~~~~C~~CG~ 122 (180)
T PRK12387 68 WEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAVWKKEDLLQQSEFALCNCRVCGR 122 (180)
T ss_pred ceeccccCcCccchhhhcCcCceEccCccchhhccHHHhhhhceeCcccchhhCC
Confidence 46788999999999999999999764321 01234567888886
No 225
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=97.09 E-value=0.00016 Score=84.51 Aligned_cols=51 Identities=29% Similarity=0.686 Sum_probs=35.9
Q ss_pred ceeccccccCcchhHhhCcccccc-----ccccc---ceeecccCccCccchhhcCccC
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAII-----GAAKH---MHTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~-----~~~~~---~~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+....++|++||.|+.+||.+... ....+ ........|++||.|+++||++
T Consensus 394 Ll~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 394 LMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 445678999999999999986321 11111 0112345899999999999998
No 226
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=97.09 E-value=0.00021 Score=57.99 Aligned_cols=54 Identities=20% Similarity=0.489 Sum_probs=34.1
Q ss_pred ceeccccccCcchhHhhCcccccccccccce-eec---------ccCc-cCccchhhcCccCceee
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMH-TIF---------SKLC-TGCDLCIKKCPVNCISM 655 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-~~~---------~~~C-~~Cg~Cv~~CP~~Ai~~ 655 (736)
+.+|.++|++||.|+..||. .+.++.++.. ... +..- ..-..-+..||++||++
T Consensus 1 V~vD~~~C~gcg~C~~~aP~-vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPE-VFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCc-cEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 46899999999999999994 3444333321 111 0111 11235689999999974
No 227
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.09 E-value=0.0052 Score=66.46 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=52.8
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC----cc----cccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN----PL----KENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd----~~----r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
=.|||.+||||.-+++.++... +.+.+.++=|.|.- .. .........+..++-.+|++++. ...++||+
T Consensus 9 ~~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k--~~if~qS~ 85 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKK--TFIFLQSD 85 (328)
T ss_pred eCCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhh--eEEEEcCC
Confidence 3578999999999999998877 45666666666542 11 12344555666777789999975 23778999
Q ss_pred cHHHHHHHH
Q psy9410 97 YFDILYKIA 105 (736)
Q Consensus 97 ~~~~~~~~a 105 (736)
..+ |.+++
T Consensus 86 ~~e-~~el~ 93 (328)
T TIGR00233 86 YPE-HYELA 93 (328)
T ss_pred cHH-HHHHH
Confidence 863 44444
No 228
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=97.07 E-value=0.00011 Score=58.84 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=22.6
Q ss_pred cccCcchhHhhCccccccccccc--------------ceeecccCccCccchhhcCccC
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAKH--------------MHTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~~--------------~~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.|++||.|+.+||.+........ ........|++||.|..+||.+
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp T----STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CCCCCCcCcccCCCccccCccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 59999999999998655211000 0012346799999999999987
No 229
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.05 E-value=0.00024 Score=73.45 Aligned_cols=50 Identities=24% Similarity=0.538 Sum_probs=34.3
Q ss_pred eeccccccCcchhHhhCcccccc-----------ccc---ccc-----------eeecccCccCccchhhcCccC
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAII-----------GAA---KHM-----------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~-----------~~~---~~~-----------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
..+...||.||.|+.+||...+. ... ... .......|+.||.|+.+||.+
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKG 227 (250)
T ss_pred hhCccccCCCcccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCC
Confidence 34578899999999999985321 000 000 001134699999999999998
No 230
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=97.03 E-value=0.00028 Score=57.12 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=35.5
Q ss_pred cceeccccccCcchhHhhCcccccccccccceee----------cccCccCccchhhcCccCceeec
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI----------FSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~----------~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.+.+|.++||+||.|..+||.- +.++.++...+ ..+.=.....-+..||++||++.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdv-F~~~d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDV-FDYDDEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEEechhhccccchhhhcCCcc-eeeCCCcceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 3678999999999999999963 33332322211 11110112457899999999874
No 231
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.01 E-value=0.00048 Score=81.71 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHhcCcCCccCcccc--CCCCCcccceeccccccCcchhHhhCcccccccccccceeecccCccCccc
Q psy9410 566 CPTGGRKGIIKLAKYLNKPIIPLNTIY--GNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDL 643 (736)
Q Consensus 566 C~~~~~~~l~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~ 643 (736)
|...+.|.|++++..+|+....+.... ..+++++.+.+|.++||.||+|+++|..- . .. .++.=|.
T Consensus 574 C~~~~~C~Lq~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~kCI~CgrCv~~C~ev--~--~~--------~~~~~~~ 641 (652)
T PRK12814 574 CNAVDDCRLRDLATRYLPDTPCKEEEHEGFSITRNGDIRFEREKCVDCGICVRTLEEY--G--AE--------GNTDIEV 641 (652)
T ss_pred cCCCCCChhHHHHHHhCCCcccccccccCccccCCCCeEeccccccCchHHHHHHHHh--c--cc--------chhhhhh
Confidence 445688999999999998766554321 12345667999999999999999999851 1 00 1222233
Q ss_pred hhhcCccCcee
Q psy9410 644 CIKKCPVNCIS 654 (736)
Q Consensus 644 Cv~~CP~~Ai~ 654 (736)
-...|||+|++
T Consensus 642 ~~~~~~~~~~~ 652 (652)
T PRK12814 642 LAESCPTGALS 652 (652)
T ss_pred hhccCCcccCC
Confidence 44459999873
No 232
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=97.01 E-value=0.00013 Score=85.25 Aligned_cols=52 Identities=27% Similarity=0.635 Sum_probs=36.8
Q ss_pred ceeccccccCcchhHhhCcccccc-----ccccc-c--eeecccCccCccchhhcCccCc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAII-----GAAKH-M--HTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~-----~~~~~-~--~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
+....++|++||.|+.+||.+... ....+ . .......|++||.|+++||+++
T Consensus 360 l~~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 360 FQELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HHHhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 355678999999999999987321 11111 0 1112468999999999999986
No 233
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=97.00 E-value=0.00025 Score=74.84 Aligned_cols=49 Identities=37% Similarity=0.727 Sum_probs=34.5
Q ss_pred cccccCcchhHhhCcccccccccc--c-----ceee------------cccCcc-CccchhhcCccCce
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAK--H-----MHTI------------FSKLCT-GCDLCIKKCPVNCI 653 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~--~-----~~~~------------~~~~C~-~Cg~Cv~~CP~~Ai 653 (736)
.+.|..|+.|+++||++||..... . ...+ ....|+ +|+.|..+||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCC
Confidence 578999999999999999863210 0 0000 123475 79999999999864
No 234
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=96.95 E-value=0.00031 Score=66.71 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=31.3
Q ss_pred ccccCcchhHhhCccccccc-----------cc-cc--ceeecccCccCccchhhcCccCc
Q psy9410 606 NKCIGCTLCIQSCPVDAIIG-----------AA-KH--MHTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai~~-----------~~-~~--~~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
..|+.||.|..+||...... .. .. ........|..||.|..+||.+.
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred ccccCCCCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCC
Confidence 47999999999999742110 00 00 00112247999999999999983
No 235
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.92 E-value=0.0041 Score=68.11 Aligned_cols=96 Identities=26% Similarity=0.439 Sum_probs=58.2
Q ss_pred ehhccCCCCCCcEEEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCc-------ccccHHHHHHHHHHHHHc
Q psy9410 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNP-------LKENKEYVNSIIKTIKWL 80 (736)
Q Consensus 8 ~~~~~~~~~~~~v~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~-------~r~~~~~~~~i~~dl~wL 80 (736)
|.+.+..-.|-.| -..=.|||.+||||.-+ +.++..-...|...++-|.|... ..+...+...+..++-.+
T Consensus 57 il~~~~~~~~~~i-ytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~ 134 (368)
T PRK12285 57 ILEAYRNGKPFAV-YTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIAL 134 (368)
T ss_pred HHHHHhcCCCeEE-EEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333433333334 33344569999999864 54444434466777777776631 112345555577788899
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHH
Q psy9410 81 NFNWDKVKKRIYYASDYFDILYKIAEYL 108 (736)
Q Consensus 81 Gi~~d~gp~~~~~~Se~~~~~~~~a~~L 108 (736)
|++++. ..+++||+..+ +++.+-.|
T Consensus 135 G~Dp~k--~~i~~qS~~~~-~~~l~~~l 159 (368)
T PRK12285 135 GFDPDK--TEIYFQSENIK-VYDLAFEL 159 (368)
T ss_pred CCCccc--eEEEECCchHH-HHHHHHHH
Confidence 999875 24788999875 66665444
No 236
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=96.92 E-value=0.00028 Score=71.99 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=32.9
Q ss_pred ccccccCcchhHhhCccccccc----------------ccc---cc-----e--eecccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG----------------AAK---HM-----H--TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~----------------~~~---~~-----~--~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...||.||.|+.+||...... +.. .. . ......|+.||.|+.+||.+
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred hhhhccccccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCC
Confidence 4579999999999999752210 000 00 0 11235699999999999998
No 237
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=96.91 E-value=0.00059 Score=54.04 Aligned_cols=52 Identities=21% Similarity=0.486 Sum_probs=28.2
Q ss_pred eccccccCcchhHhhCcccccccccc-cceee-cccC----ccCccchhhcCccCceee
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGAAK-HMHTI-FSKL----CTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~~~-~~~~~-~~~~----C~~Cg~Cv~~CP~~Ai~~ 655 (736)
+|.++|++||.|+..||. .+.++.+ +...+ .... =..+...+..||++||+.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~-vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPD-VFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TT-TEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcH-heeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 578899999999999995 4444443 22222 1111 123567899999999973
No 238
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=96.91 E-value=0.00026 Score=79.09 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=37.5
Q ss_pred ccccccCcchhHhhCccccccc---------ccccceeecccCccC--ccchhhcCccCceeec
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG---------AAKHMHTIFSKLCTG--CDLCIKKCPVNCISMI 656 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~---------~~~~~~~~~~~~C~~--Cg~Cv~~CP~~Ai~~~ 656 (736)
.+..||.||.|+++||.+.... +.+.........|+. ||.|..+||++ |.+.
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk-i~l~ 433 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK-YEYG 433 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC-chHH
Confidence 4567999999999999975532 111122334567988 99999999998 5543
No 239
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.89 E-value=0.00031 Score=54.83 Aligned_cols=20 Identities=50% Similarity=1.315 Sum_probs=15.4
Q ss_pred ccccccCcchhHhhCccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai 623 (736)
+.+.|++||.|+.+||.+||
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 56799999999999999987
No 240
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=96.89 E-value=0.00039 Score=76.74 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=37.3
Q ss_pred chhHhhCcccccccccccceeecccCccCccchhhcCccCceeec
Q psy9410 612 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 612 g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..|+..||.+||..+......++...|+.|++|+.+||. |+...
T Consensus 248 ~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred hhHhhcCCccccccCCCceEEEcchhcCcCccccccCcc-cccCC
Confidence 349999999999987643677899999999999999998 77654
No 241
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.86 E-value=0.00044 Score=38.88 Aligned_cols=15 Identities=47% Similarity=1.411 Sum_probs=13.9
Q ss_pred ccCcchhHhhCcccc
Q psy9410 608 CIGCTLCIQSCPVDA 622 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~a 622 (736)
|++|+.|+.+||.+|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999876
No 242
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.84 E-value=0.00052 Score=63.87 Aligned_cols=58 Identities=24% Similarity=0.484 Sum_probs=40.7
Q ss_pred cCcccCCCCCCC---CchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcc
Q psy9410 536 LPQTQCTKCGYP---GCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCT 612 (736)
Q Consensus 536 ~~p~~C~~C~~~---~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg 612 (736)
+.+..|.+|+.+ .|+ .+||.++... . ........++.+.|++|+
T Consensus 5 v~~~~C~gC~~~~~~~Cv-------------~~CP~~ai~~--------~------------~~~~~~~~id~~~C~~Cg 51 (132)
T TIGR02060 5 VYPTKCDGCKAGEKTACV-------------YICPNDLMHL--------D------------TEIMKAYNIEPDMCWECY 51 (132)
T ss_pred EccccccCccCCchhcCH-------------hhcCccceEe--------c------------CCCceeeecCchhCccHH
Confidence 345789999843 787 7898765320 0 000112357889999999
Q ss_pred hhHhhCcccccccc
Q psy9410 613 LCIQSCPVDAIIGA 626 (736)
Q Consensus 613 ~C~~~CP~~ai~~~ 626 (736)
.|+.+||.+||.+.
T Consensus 52 ~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 52 SCVKACPQGAIDVR 65 (132)
T ss_pred HHHHhCCcCceEEE
Confidence 99999999999764
No 243
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.84 E-value=0.00055 Score=62.89 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=23.5
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
+.++...|++||.|+.+||.+||.+..
T Consensus 68 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred eEecCCcCcChhhhHHhCCcCcEEecc
Confidence 456788999999999999999998754
No 244
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.81 E-value=0.00037 Score=78.12 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred ccccccCcchhHhhCccccccc---------ccccceeecccCccC--ccchhhcCccCceeec
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG---------AAKHMHTIFSKLCTG--CDLCIKKCPVNCISMI 656 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~---------~~~~~~~~~~~~C~~--Cg~Cv~~CP~~Ai~~~ 656 (736)
.+..||.||.|+++||.+.... +.+.........|+. ||.|..+||+. |.+.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk-ipL~ 434 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK-YEYG 434 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC-chHH
Confidence 4568999999999999975421 111112345568999 99999999998 5543
No 245
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=96.77 E-value=0.00041 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.964 Sum_probs=16.7
Q ss_pred ccceeccccccCcchhHhhCcccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~a 622 (736)
..+.++.+.|++||.|+.+||++|
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp TTSEETGGG----SHHHHHTTTS-
T ss_pred eEEEEechhCcCcChhhhhCcCcC
Confidence 456789999999999999999986
No 246
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=96.74 E-value=0.00048 Score=76.92 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=32.5
Q ss_pred ccccccCcchhHhhCcccccccc------ccc------------ce--eecccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA------AKH------------MH--TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~------~~~------------~~--~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...|+.||.|..+||+-..... ..+ .. ......|..||.|..+||++
T Consensus 291 e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 291 EVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 56789999999999996321100 000 00 01135799999999999998
No 247
>KOG0432|consensus
Probab=96.71 E-value=0.0025 Score=74.14 Aligned_cols=93 Identities=27% Similarity=0.309 Sum_probs=68.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCccc---------------------------------c
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNPLK---------------------------------E 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~~r---------------------------------~ 65 (736)
.-=|||.||.||||||-+..+-+.++|. ..|.-++-+-.||..- .
T Consensus 80 ~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~W 159 (995)
T KOG0432|consen 80 PLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEW 159 (995)
T ss_pred ecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHH
Confidence 3335899999999999999999999985 4587788777776111 1
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc
Q psy9410 66 NKEYVNSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 66 ~~~~~~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c 117 (736)
+.++...|.+.|+.||- +|+. .+|+-+ .-...-+...+|-++|..|..
T Consensus 160 k~e~g~~I~~Qlk~lGas~DW~r----e~fTmD~~~s~AV~eAFvrL~eeglIyR~ 211 (995)
T KOG0432|consen 160 KEEYGGRIYNQLKRLGASLDWDR----EAFTMDPKLSRAVTEAFVRLHEEGLIYRA 211 (995)
T ss_pred HHHhCccHHHHHHHhcCcccccH----hhcccCHHHHHHHHHHHHHHHhcCceEec
Confidence 35778899999999996 5665 555422 223355677899999999954
No 248
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=96.67 E-value=0.00057 Score=63.89 Aligned_cols=25 Identities=24% Similarity=0.724 Sum_probs=21.6
Q ss_pred ceeccccccCcchhHhhCccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
+.++.+.|++||.|+.+||++|+.+
T Consensus 84 ~~i~~~~C~~Cg~Cv~vCP~~a~~l 108 (133)
T PRK09625 84 KGVDYSHCKGCGVCVEVCPTNPKSL 108 (133)
T ss_pred EEeCcCcCcChhHHHHHCCcCceEE
Confidence 4578889999999999999998653
No 249
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.66 E-value=0.00089 Score=66.17 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=24.3
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
...+|...|++||.|+.+||.+||.+..
T Consensus 96 ~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 96 NYSIDFGVCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred eeecCcccccCcCchhhhcCCCCeeccc
Confidence 3567889999999999999999998754
No 250
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.65 E-value=0.00068 Score=71.51 Aligned_cols=49 Identities=37% Similarity=0.651 Sum_probs=33.5
Q ss_pred eccccccCcchhHhhCccccccc----------------cccc--c------eeecccCccCccchhhcCccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIG----------------AAKH--M------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~----------------~~~~--~------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.+...||.||.|+.+||...... +... . .......|+.||.|+.+||.+
T Consensus 149 ~~~~~CI~CG~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 149 WKFAQCIWCGLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRD 221 (279)
T ss_pred hcchhCcccCcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCC
Confidence 35689999999999999753210 1000 0 001235899999999999987
No 251
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=96.63 E-value=0.00065 Score=73.41 Aligned_cols=50 Identities=32% Similarity=0.738 Sum_probs=32.7
Q ss_pred ccccCcchhHhhCcccc-ccc--------cccc-----------ceeecccCccCccchhhcCccCceeec
Q psy9410 606 NKCIGCTLCIQSCPVDA-IIG--------AAKH-----------MHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a-i~~--------~~~~-----------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
-.||+||+|...||.-. +.. ..-+ ...-.+..|..||.|.++||.. |.+.
T Consensus 308 L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~-Ipl~ 377 (459)
T COG1139 308 LRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVK-IPLP 377 (459)
T ss_pred HHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCC-CCHH
Confidence 46999999999999621 100 0000 0011245799999999999998 5443
No 252
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=96.62 E-value=0.00089 Score=71.71 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=33.8
Q ss_pred cccccCcchhHhhCccccccccccc-------------------ceeecc-----cCcc-----CccchhhcCccC
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKH-------------------MHTIFS-----KLCT-----GCDLCIKKCPVN 651 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~-------------------~~~~~~-----~~C~-----~Cg~Cv~~CP~~ 651 (736)
.+.|..|++|+++||.+||..+.+. ...++. ..|. .|+.|..+||.+
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf~ 279 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPFN 279 (314)
T ss_pred cccCcchhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCCC
Confidence 3679999999999999999764221 011122 2354 599999999997
No 253
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.58 E-value=0.00083 Score=60.09 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=23.1
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++|+.|+.+||.+||.+.
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EEECchhCCCcCchhhhcCcCcEEEe
Confidence 46788999999999999999999764
No 254
>PLN02959 aminoacyl-tRNA ligase
Probab=96.57 E-value=0.0038 Score=77.72 Aligned_cols=28 Identities=39% Similarity=0.359 Sum_probs=25.5
Q ss_pred EEEC-CCCCCcCchhHHHHHHHHHHHHHh
Q psy9410 21 TRFA-PEPNGYLHIGHAKSIFINFELAYK 48 (736)
Q Consensus 21 ~Rfa-P~PtG~lHiGhar~al~n~~~Ar~ 48 (736)
.=|| |++||.|||||+++..+.+.+||.
T Consensus 49 i~~ppPY~NG~lHiGHa~t~t~~D~i~Ry 77 (1084)
T PLN02959 49 GNFPYPYMNGLLHLGHAFSLSKLEFAAAY 77 (1084)
T ss_pred EeCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence 6677 999999999999999999999984
No 255
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=96.53 E-value=0.00065 Score=58.94 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=24.0
Q ss_pred CcccceeccccccCcchhHhhCccccc
Q psy9410 597 SRCCAIIKENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 597 ~~~~~~~d~~~Ci~Cg~C~~~CP~~ai 623 (736)
..+.+.+|.++|++||.|+.+||.+++
T Consensus 52 e~G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 52 DDGSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred CCCCEEEcCCCCCcchhhhhhcCCCCc
Confidence 457799999999999999999998864
No 256
>PRK06273 ferredoxin; Provisional
Probab=96.53 E-value=0.0008 Score=65.14 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=22.7
Q ss_pred cceeccccccCcchhHhhCccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
...+|..+|++|+.|+.+||.+||..
T Consensus 85 ~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 85 IPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ceecccccCcCCCCcchhCCHhheec
Confidence 45788999999999999999999843
No 257
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.51 E-value=0.0013 Score=80.97 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=40.4
Q ss_pred cceeccccccCcchhHh--hCccccccccc---ccceeecccCccCccchhh-cCccC
Q psy9410 600 CAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPVN 651 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~--~CP~~ai~~~~---~~~~~~~~~~C~~Cg~Cv~-~CP~~ 651 (736)
.+.||++.|.|||.|.. -||. |.... +....++...|.+|+.|++ +||+=
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~a--i~~~~t~~grK~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLS--VEPVETPFGRKRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcc--eeeccccCCccEEECHHHCCCccccccCCCCCC
Confidence 68899999999999997 4884 43222 3346789999999999999 99984
No 258
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.45 E-value=0.00096 Score=56.42 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=23.1
Q ss_pred eccccccCcchhHhhCccccccccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
+|.+-|.|||.|+.+||..||.+..
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred eEcccccCceechhhCChhheEeEe
Confidence 8999999999999999999998754
No 259
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.44 E-value=0.0014 Score=58.63 Aligned_cols=26 Identities=35% Similarity=0.820 Sum_probs=23.4
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+|.+.|++||.|+.+||.+||.+.
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTKAITMV 101 (105)
T ss_pred EEeCchhCcCcchhhhhcCcCcEEec
Confidence 56888999999999999999999764
No 260
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=96.43 E-value=0.0031 Score=77.71 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=54.5
Q ss_pred Cce-EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 253 PKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 253 p~~-~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+. +..|++..+|+|||||+||.+ ++.++.++ |.++++|.||+..|....+.+|+++.+.+..
T Consensus 605 Pk~i~~~G~vl~~G~KMSKSlGNvI---------------~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~ 668 (938)
T TIGR00395 605 PRGIVVNGYVMLEGKKMSKSKGNVL---------------TLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTI 668 (938)
T ss_pred CcEEEEeceEEeCCccccCcCCCCC---------------CHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 543 477888889999999998765 78888887 9999999999999888888899998887765
Q ss_pred hc
Q psy9410 332 RD 333 (736)
Q Consensus 332 ~~ 333 (736)
+.
T Consensus 669 ~~ 670 (938)
T TIGR00395 669 LR 670 (938)
T ss_pred HH
Confidence 53
No 261
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.43 E-value=0.001 Score=68.80 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=32.0
Q ss_pred ccccccCcchhHhhCccccccc----------------cc-cc-----ce----eecccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG----------------AA-KH-----MH----TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~----------------~~-~~-----~~----~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
....||.||.|+.+||.-.... +. +. .. ......|+.||.|..+||.+
T Consensus 145 ~~~~CI~Cg~C~saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 145 QFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred HHHhcCcCccccCcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCC
Confidence 3468999999999999732110 00 00 00 01123799999999999997
No 262
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.41 E-value=0.0014 Score=40.51 Aligned_cols=19 Identities=42% Similarity=0.938 Sum_probs=17.1
Q ss_pred eecccCccCccchhhcCcc
Q psy9410 632 TIFSKLCTGCDLCIKKCPV 650 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~ 650 (736)
.+|.++|++|+.|+.+||.
T Consensus 4 ~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACPV 22 (22)
T ss_pred EEccccccCchhHHHhhCc
Confidence 5788999999999999984
No 263
>KOG2282|consensus
Probab=96.40 E-value=0.0011 Score=72.41 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccC--CCCCc-ccceeccccccCcchhHhhCcccccccccccce
Q psy9410 555 AIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEKSR-CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMH 631 (736)
Q Consensus 555 ~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~--~~~~~-~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~ 631 (736)
.|.+|+.+|..|..|+.|.||.-+-..|...-++..... .++.- +.+.--..+||.|.+|++--..-|-..+-+...
T Consensus 121 ll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrciqctrcvrfaseiagv~dlgttg 200 (708)
T KOG2282|consen 121 LLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRCIQCTRCVRFASEIAGVDDLGTTG 200 (708)
T ss_pred HHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhhhhhhhhcCccchHHHHHHHHHHhHHHHHHHHHhhcCCccccccc
Confidence 567999999999999999999988877766555432110 11211 233334679999999999766533221111000
Q ss_pred ee----------cccCccCccchhhcCccCceeecccCCccccccccc
Q psy9410 632 TI----------FSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWS 669 (736)
Q Consensus 632 ~~----------~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~ 669 (736)
.. ....-..-|.-++.||.||++-.++-..++.|+...
T Consensus 201 rg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe~rk 248 (708)
T KOG2282|consen 201 RGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWETRK 248 (708)
T ss_pred CCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcceeecccccccc
Confidence 00 011223357889999999999887765667776543
No 264
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.39 E-value=0.0012 Score=38.48 Aligned_cols=15 Identities=47% Similarity=1.500 Sum_probs=8.8
Q ss_pred ccccCcchhHhhCcc
Q psy9410 606 NKCIGCTLCIQSCPV 620 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~ 620 (736)
+.|++|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 356666666666664
No 265
>PRK06991 ferredoxin; Provisional
Probab=96.38 E-value=0.0013 Score=68.61 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=22.7
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++...|++||.|+.+||.++|.+.
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~~AI~~~ 135 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPVDCIDMV 135 (270)
T ss_pred eeeCHhhCCCchHHHhhCCcCCeEee
Confidence 45678899999999999999999764
No 266
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=96.35 E-value=0.0015 Score=70.96 Aligned_cols=54 Identities=22% Similarity=0.572 Sum_probs=40.5
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|. .+||+++.. .. ..+|.+.|++|+.|+
T Consensus 299 id~dkCi~Cg~C~~~-------------~aCPt~AI~---------------------~~-----~~Id~~~Ci~CGaCV 339 (391)
T TIGR03287 299 YNPERCENCDPCLVE-------------EACPVPAIK---------------------KD-----GTLNTEDCFGCGYCA 339 (391)
T ss_pred EchhhCcCCCCCcCC-------------cCCCHhhEe---------------------cc-----ceeChHhCcChHHHH
Confidence 455689999976555 689876532 00 146888999999999
Q ss_pred hhCcccccccccc
Q psy9410 616 QSCPVDAIIGAAK 628 (736)
Q Consensus 616 ~~CP~~ai~~~~~ 628 (736)
.+||.+|+.+...
T Consensus 340 ~aCP~~AI~~~~~ 352 (391)
T TIGR03287 340 EICPGGAFEVNLG 352 (391)
T ss_pred hhCCccceEEeCC
Confidence 9999999987643
No 267
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.34 E-value=0.0018 Score=49.85 Aligned_cols=21 Identities=38% Similarity=1.032 Sum_probs=14.5
Q ss_pred ccceeccccccCcchhHhhCc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCP 619 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP 619 (736)
....++...|++||.|+.+||
T Consensus 32 ~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 32 KKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp SSEEE-TTT--TTSHHHHH-T
T ss_pred CCeEeCcccccccChhhhhCc
Confidence 345679999999999999999
No 268
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=96.34 E-value=0.0039 Score=69.58 Aligned_cols=51 Identities=35% Similarity=0.664 Sum_probs=45.7
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCc
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII 586 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~ 586 (736)
+|..+|+.||+|+|++||++++.|....+.||.+.......++..++.+..
T Consensus 12 LP~~nCg~CG~~~C~afA~~v~~g~~~~~~C~~~~~~~~~~l~~~~~ppi~ 62 (450)
T PRK04165 12 LPKTNCGECGEPTCLAFAMKLASGKAELDDCPYLSEEAKEKLEEASAPPIR 62 (450)
T ss_pred CCCCCCCCCCCccHHHHHHHHHcCCCCccCCCCCCHHHHHHHHHHhCCCce
Confidence 688999999999999999999999999999999998888888887765543
No 269
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=96.33 E-value=0.0015 Score=70.83 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=24.9
Q ss_pred cccceeccccccCcchhHhhCccccccc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
.+.+.+|.++|++||.|+.+||++|+..
T Consensus 206 ~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~ 233 (341)
T TIGR02066 206 NKSLEVDVEKCIYCGNCYTMCPAMPIFD 233 (341)
T ss_pred CCceeeccccCCcCCchHHhCchhhccC
Confidence 4568999999999999999999999863
No 270
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.30 E-value=0.0021 Score=79.07 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=40.8
Q ss_pred ccceeccccccCcchhHh--hCccccccccc---ccceeecccCccCccchhh-cCccC
Q psy9410 599 CCAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPVN 651 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~--~CP~~ai~~~~---~~~~~~~~~~C~~Cg~Cv~-~CP~~ 651 (736)
..+.||++.|.|||.|.. .||. |.... +....++...|.+|+.|++ +||+=
T Consensus 636 ~r~~In~~vCegCgdC~~~s~C~a--i~p~~t~~grK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 636 KRVFINEAVCEGCGDCSVKSNCLS--VEPVETEFGRKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred ceEEEcccccCCchhhhhccCCcc--eeeccccCCccEEECHhHCCCccccccCCCCCc
Confidence 368899999999999997 4985 33222 3346788899999999999 99985
No 271
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.23 E-value=0.0024 Score=78.44 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=40.4
Q ss_pred ccceeccccccCcchhHh--hCccccccccc---ccceeecccCccCccchhh-cCccC
Q psy9410 599 CCAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPVN 651 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~--~CP~~ai~~~~---~~~~~~~~~~C~~Cg~Cv~-~CP~~ 651 (736)
..+.||++.|.|||.|.. .||. |.... +....++...|.+|+.|++ +||+=
T Consensus 650 ~r~~In~~vCeGCgdC~~~snC~a--i~p~et~~grK~~Idqs~Cn~d~sC~~G~CPsF 706 (1186)
T PRK13029 650 RRVFINELVCEGCGDCSVQSNCLA--VQPVETEFGRKRKINQSSCNKDFSCVKGFCPSF 706 (1186)
T ss_pred ccEEEcccccCCchhhhhccCCce--eeeccccCCccEEECHhHCCCccccccCCCCCc
Confidence 367899999999999997 4884 33222 3346788899999999999 99983
No 272
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.19 E-value=0.0029 Score=70.76 Aligned_cols=53 Identities=28% Similarity=0.786 Sum_probs=38.9
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
.+.+..|..|+ .|. .+||.++... . .....++.+.|++|+.|
T Consensus 6 ~id~~~Ci~C~--~C~-------------~~CP~~ai~~---------------------~--~~~~~i~~~~C~~C~~C 47 (411)
T TIGR03224 6 LIDPEICIRCN--TCE-------------ETCPIDAITH---------------------D--DRNYVVKADVCNGCMAC 47 (411)
T ss_pred eeCcccCcCcc--chh-------------hhCCcccEec---------------------c--CCceEeCcccCcCHHHH
Confidence 35567899998 576 7888765320 0 01245788999999999
Q ss_pred HhhCccccccc
Q psy9410 615 IQSCPVDAIIG 625 (736)
Q Consensus 615 ~~~CP~~ai~~ 625 (736)
+.+||++||..
T Consensus 48 ~~~CP~~AI~~ 58 (411)
T TIGR03224 48 VSPCPTGAIDN 58 (411)
T ss_pred HhhcCccccee
Confidence 99999999974
No 273
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=96.18 E-value=0.0031 Score=61.33 Aligned_cols=27 Identities=37% Similarity=0.811 Sum_probs=23.6
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..++...|++||.|+.+||.+||.+..
T Consensus 92 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 92 YDINFGRCIFCGFCEEACPTDAIVETP 118 (164)
T ss_pred eecCCCcCcccCcchhhcCcCcceecC
Confidence 457889999999999999999998653
No 274
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.16 E-value=0.0022 Score=62.41 Aligned_cols=26 Identities=35% Similarity=0.948 Sum_probs=22.8
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++||.|+.+||.+||.+.
T Consensus 138 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 138 HTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEeecccccChhHHHHhcCcCceEee
Confidence 45678999999999999999999764
No 275
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.14 E-value=0.0013 Score=68.09 Aligned_cols=48 Identities=21% Similarity=0.577 Sum_probs=32.3
Q ss_pred ccccccCcchhHhhCcccccc----------------ccc-c---cc---eee----cccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAII----------------GAA-K---HM---HTI----FSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~----------------~~~-~---~~---~~~----~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...||.||.|..+||..... .+. . .. ..+ ....|+.||.|..+||.+
T Consensus 150 ~~~~CI~CG~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKG 224 (249)
T ss_pred hhhhccCcCcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCC
Confidence 457899999999999964320 011 0 00 001 125799999999999997
No 276
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.14 E-value=0.004 Score=55.56 Aligned_cols=27 Identities=37% Similarity=0.749 Sum_probs=23.3
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..++.+.|++|+.|+.+||.+||.+..
T Consensus 48 ~~i~~~~C~~C~~C~~~CP~~AI~~~~ 74 (103)
T PRK09626 48 KVVHPESCIGCRECELHCPDFAIYVAD 74 (103)
T ss_pred eEeCCccCCCcCcchhhCChhhEEEec
Confidence 456788999999999999999998654
No 277
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=96.14 E-value=0.0021 Score=71.75 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=34.1
Q ss_pred ccccccCcchhHhhCcccccccc--------ccc-c--------eeecccCccCccchhhcCccCc
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA--------AKH-M--------HTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~--------~~~-~--------~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
.-..|++||.|..+||....... ..+ . .......|+.|+.|..+||.+.
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred chhhcCCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 34679999999999998654211 000 0 0112357999999999999983
No 278
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.13 E-value=0.0028 Score=63.06 Aligned_cols=26 Identities=35% Similarity=0.884 Sum_probs=22.8
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++||.|+.+||.+||.+.
T Consensus 139 ~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 139 HTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeecCCcCCchHHHHHHcCcCceEEe
Confidence 35677899999999999999999864
No 279
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.11 E-value=0.0026 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.774 Sum_probs=22.8
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++...|++|+.|+.+||.+||.+.
T Consensus 50 ~~i~~~~C~~C~~C~~~CP~~Ai~~~ 75 (78)
T TIGR02179 50 VGIDYDYCKGCGICANVCPVKAIEMV 75 (78)
T ss_pred EEecCccCcCccchhhhCCccccEec
Confidence 45677899999999999999998764
No 280
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=96.10 E-value=0.0021 Score=71.80 Aligned_cols=46 Identities=35% Similarity=0.728 Sum_probs=31.7
Q ss_pred ccccCcchhHhhCccccccc-------c-ccc-c--------eeecccCccCccchhhcCccC
Q psy9410 606 NKCIGCTLCIQSCPVDAIIG-------A-AKH-M--------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai~~-------~-~~~-~--------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+.|+.||.|..+||.-.... . ..+ . .......|..|+.|..+||.+
T Consensus 5 ~~Ci~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred hhCCCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCC
Confidence 57999999999999742210 0 000 0 001245899999999999998
No 281
>PRK06214 sulfite reductase; Provisional
Probab=96.07 E-value=0.0057 Score=70.15 Aligned_cols=48 Identities=38% Similarity=0.794 Sum_probs=41.5
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCc-ccCccCCCChhHHHHHHHHhcCc
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKK-ANYNQCPTGGRKGIIKLAKYLNK 583 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~-~~~~~C~~~~~~~l~~~~~~~g~ 583 (736)
-++..+|++||+ +|.+||++|+.+. ...+.|++|+......++..++.
T Consensus 86 ~lp~~~Cg~CGy-~C~~~a~a~~~~~~~~~~~C~~gg~~~~~~~~~~~~~ 134 (530)
T PRK06214 86 AMAQQDCGQCGY-NCQDYAEAIASGEEKRLNLCAPGGKETARMLKKLAEE 134 (530)
T ss_pred hCCCCCcccCCC-CCHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 478899999999 8999999999985 78899999998877777766654
No 282
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.05 E-value=0.0029 Score=61.61 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=23.5
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..+|...|++||.|+.+||.+||.+..
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCC
Confidence 457888999999999999999998753
No 283
>KOG3256|consensus
Probab=96.01 E-value=0.0023 Score=59.82 Aligned_cols=28 Identities=43% Similarity=0.845 Sum_probs=24.4
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..-||..+||-||.|+++||++||...+
T Consensus 144 rYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 144 RYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred eecccceeeeeecchhhhCCccceeccC
Confidence 4567899999999999999999998654
No 284
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=95.97 E-value=0.0046 Score=54.20 Aligned_cols=28 Identities=36% Similarity=0.761 Sum_probs=24.5
Q ss_pred ccceeccccccCcchhHhhCcccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
....++.++|+.|+.|+.+||.+|+...
T Consensus 56 ~~~~~~~~~C~~C~~C~~~Cp~~a~~~~ 83 (99)
T COG1145 56 PEVVIDPDLCVLCGACLKVCPVDALSIA 83 (99)
T ss_pred ceEEEccccCccccchHhhCCcCCeehh
Confidence 4577889999999999999999998754
No 285
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=95.97 E-value=0.0029 Score=67.67 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=32.4
Q ss_pred ccccCcchhHhhCcccccccccccc------eeecccCc-------------cCccchhhcCccC
Q psy9410 606 NKCIGCTLCIQSCPVDAIIGAAKHM------HTIFSKLC-------------TGCDLCIKKCPVN 651 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai~~~~~~~------~~~~~~~C-------------~~Cg~Cv~~CP~~ 651 (736)
+.|-.|..|+++||++|+.....-. .......| .+|+.|..+||-+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc
Confidence 8899999999999999996431100 00111223 3899999999987
No 286
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=95.94 E-value=0.0029 Score=68.32 Aligned_cols=20 Identities=40% Similarity=1.059 Sum_probs=16.7
Q ss_pred cCccCccchhhcCccCceeec
Q psy9410 636 KLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 636 ~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..|++||.|..+||.+ |.+.
T Consensus 307 ~~CvgCGrC~~~CP~~-I~i~ 326 (344)
T PRK15055 307 HMCVGCGRCDDRCPEY-ISFS 326 (344)
T ss_pred hhCcCcCccccccCCC-CCHH
Confidence 4699999999999998 5543
No 287
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=95.89 E-value=0.0025 Score=65.57 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=32.0
Q ss_pred ccccccCcchhHhhCcccccccc----c-----------ccc--------e-ee---cccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA----A-----------KHM--------H-TI---FSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~----~-----------~~~--------~-~~---~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...|+.||.|..+||......+ . +.. . .. ....|+.||.|..+||.+
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 139 GLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKG 213 (232)
T ss_pred hHHhccccccccccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCC
Confidence 45689999999999996421100 0 000 0 00 235799999999999997
No 288
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=95.88 E-value=0.0031 Score=67.29 Aligned_cols=47 Identities=32% Similarity=0.642 Sum_probs=35.8
Q ss_pred eccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCcc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~ 650 (736)
++...|.+||.|+.+||. +|.........+..-.|.+|+.|..+||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~~~~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDEAPLLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEecccchhhhhhhcccchHHhhhCcc
Confidence 467899999999999999 88765443333344456778899999994
No 289
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.88 E-value=0.0033 Score=68.69 Aligned_cols=28 Identities=43% Similarity=0.956 Sum_probs=24.7
Q ss_pred cccceeccccccCcchhHhhCccccccc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
.+...|.++.|+|||.|++.||++||.+
T Consensus 42 ~gkpvIsE~lCiGCGICvkkCPF~AI~I 69 (591)
T COG1245 42 TGKPVISEELCIGCGICVKKCPFDAISI 69 (591)
T ss_pred CCCceeEhhhhccchhhhccCCcceEEE
Confidence 4456888999999999999999999975
No 290
>CHL00065 psaC photosystem I subunit VII
Probab=95.88 E-value=0.0047 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.798 Sum_probs=21.5
Q ss_pred eeccccccCcchhHhhCcccccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.++.+.|++|+.|+.+||.+||.+.
T Consensus 42 ~~~~~~C~~C~~C~~~CP~~Ai~~~ 66 (81)
T CHL00065 42 APRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred cCCCCcCCChhhhhhhcCccccEEE
Confidence 3456889999999999999999864
No 291
>PRK08764 ferredoxin; Provisional
Probab=95.76 E-value=0.0047 Score=57.93 Aligned_cols=25 Identities=40% Similarity=0.927 Sum_probs=21.7
Q ss_pred ceeccccccCcchhHhhCccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..++.++|++||.|+.+||++||.+
T Consensus 110 ~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 110 HTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred eeecCCcCcCccchhhhcCccceEe
Confidence 3567789999999999999999864
No 292
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=95.74 E-value=0.0048 Score=66.25 Aligned_cols=20 Identities=40% Similarity=0.979 Sum_probs=16.8
Q ss_pred cCccCccchhhcCccCceeec
Q psy9410 636 KLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 636 ~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..|++||.|+.+||.+ |.+.
T Consensus 301 ~~CvgCGrC~~~CP~~-idi~ 320 (334)
T TIGR02910 301 HMCVGCGRCDDICPEY-ISFS 320 (334)
T ss_pred cccCCcCchhhhCCCC-CCHH
Confidence 4599999999999998 5543
No 293
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.70 E-value=0.005 Score=56.67 Aligned_cols=27 Identities=41% Similarity=0.814 Sum_probs=23.4
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
+.++...|++||.|+.+||.+++.+..
T Consensus 77 ~~~~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 77 YQINFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred ceECcccCCCCCchhhhCCCccccccc
Confidence 457889999999999999999997643
No 294
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.70 E-value=0.0073 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.554 Sum_probs=23.1
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+.++...|++||.|+.+||.++|...
T Consensus 60 ~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 60 TVEFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred eeEecCccCcCccChhhHCCccccCcC
Confidence 356788899999999999999999753
No 295
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=95.65 E-value=0.0045 Score=64.05 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=32.5
Q ss_pred eccccccCcchhHhhCcccccc------cc------------cc-----c-c-ee---ecccCccCccchhhcCccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAII------GA------------AK-----H-M-HT---IFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~------~~------------~~-----~-~-~~---~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.....||.||.|..+||.-... +. .+ . . .. .....|..|+.|..+||.+
T Consensus 139 ~~~~~CI~CG~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 139 QEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVCPEH 215 (251)
T ss_pred hchhhcccCCcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcCCCC
Confidence 3457899999999999964221 00 00 0 0 01 1234699999999999998
No 296
>KOG0063|consensus
Probab=95.65 E-value=0.0056 Score=66.31 Aligned_cols=22 Identities=50% Similarity=1.355 Sum_probs=11.8
Q ss_pred ccCccCccchhhcCccCceeec
Q psy9410 635 SKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 635 ~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
...|++||.|+..||.+||...
T Consensus 49 e~lCigcgicvkkcpf~ai~ii 70 (592)
T KOG0063|consen 49 EELCIGCGICVKKCPFEAIQII 70 (592)
T ss_pred HhhhccccceeeccCcceEEec
Confidence 3445555555555555555443
No 297
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.63 E-value=0.0054 Score=35.73 Aligned_cols=16 Identities=38% Similarity=1.232 Sum_probs=13.9
Q ss_pred cCccCccchhhcCccC
Q psy9410 636 KLCTGCDLCIKKCPVN 651 (736)
Q Consensus 636 ~~C~~Cg~Cv~~CP~~ 651 (736)
..|++|+.|+.+||++
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 5799999999999974
No 298
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=95.62 E-value=0.0026 Score=70.63 Aligned_cols=50 Identities=36% Similarity=0.791 Sum_probs=33.7
Q ss_pred cccccCcchhHhhCccccccc-----ccccce---eecccCccCccchhhcCccCceee
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIG-----AAKHMH---TIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~-----~~~~~~---~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
..+|..||.|..+||...-.. ..++.. .--.+.|++||+|.++||.+ |.+
T Consensus 399 a~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~-ipi 456 (772)
T COG1152 399 ARKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPKN-IPI 456 (772)
T ss_pred HHhcccccchhccCCcccchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCccc-Cch
Confidence 478999999999999642211 111100 11135799999999999988 443
No 299
>PLN00071 photosystem I subunit VII; Provisional
Probab=95.61 E-value=0.0065 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.843 Sum_probs=21.2
Q ss_pred eccccccCcchhHhhCcccccccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
++.+.|++|+.|+.+||.+||.+.
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai~~~ 66 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred CCCCcCcChhhHHhhcCCccceEe
Confidence 467899999999999999999864
No 300
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=95.57 E-value=0.0052 Score=63.52 Aligned_cols=27 Identities=37% Similarity=0.865 Sum_probs=23.7
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+.|+.++|++|+.|..+||++|+...
T Consensus 215 ~~~I~~~~ci~c~~c~~ac~~gav~~~ 241 (354)
T COG2768 215 VVKIDYEKCIGCGQCMEACPYGAVDQN 241 (354)
T ss_pred ceeechhhccchhhhhhhccCcccccc
Confidence 467899999999999999999998643
No 301
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=95.56 E-value=0.0034 Score=67.96 Aligned_cols=48 Identities=23% Similarity=0.529 Sum_probs=31.7
Q ss_pred cccccCcchhHhhCccccc--------------cc--cc-cc--c---eeec-----ccCccCccchhhcCccCc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI--------------IG--AA-KH--M---HTIF-----SKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai--------------~~--~~-~~--~---~~~~-----~~~C~~Cg~Cv~~CP~~A 652 (736)
...||.||.|..+||.... .+ +. +. . ..++ ...|+.|+.|..+||.+.
T Consensus 151 ~~~Ci~CG~C~s~CP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 151 TGNCILCGACYSECNAREVNPEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred hhhCcccCcccccCCCCCcCcCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCC
Confidence 4679999999999996421 10 00 00 0 0011 247999999999999983
No 302
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=95.55 E-value=0.015 Score=71.48 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=52.1
Q ss_pred CceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 253 PKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 253 p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+++ ..|++..+|+|||||++|.+ ++.++.++ |.++++|.||+..+....+.+|+.+.+....
T Consensus 562 Pk~v~~hG~vl~~G~KMSKS~GNvV---------------dp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~ 625 (897)
T PRK12300 562 PRGIVVNGFVLLEGKKMSKSKGNVI---------------PLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESVR 625 (897)
T ss_pred CcEEEEcceEEECCccccCcCCCCC---------------CHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHHH
Confidence 4333 56777789999999998755 67787876 9999999999998888888889988877765
Q ss_pred hc
Q psy9410 332 RD 333 (736)
Q Consensus 332 ~~ 333 (736)
+.
T Consensus 626 ~~ 627 (897)
T PRK12300 626 RQ 627 (897)
T ss_pred HH
Confidence 43
No 303
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=95.52 E-value=0.0036 Score=71.73 Aligned_cols=23 Identities=39% Similarity=1.115 Sum_probs=19.9
Q ss_pred eeccccccCcchhHhhCcccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAII 624 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~ 624 (736)
-++.+.|+.||.|+.+||.+|+.
T Consensus 188 ~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 188 PINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred ccccccccccCccceecchhhhh
Confidence 35678999999999999999874
No 304
>KOG0063|consensus
Probab=95.51 E-value=0.0085 Score=64.96 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=42.9
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceee
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
..+.+..|||||.|++-||+.||..-+-.........|..|+.|..-||-.+.+.
T Consensus 45 ~~ise~lCigcgicvkkcpf~ai~iinlp~nl~~etthry~~n~fKlhrlp~prp 99 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEAIQIINLPTNLEKETTHRYSANSFKLHRLPIPRP 99 (592)
T ss_pred chhhHhhhccccceeeccCcceEEecCCchhHhhhhhhhhcccceeeccCCCCCc
Confidence 4567889999999999999999986443333345668999999999998765443
No 305
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.50 E-value=0.04 Score=58.55 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC-------cc-cccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN-------PL-KENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd-------~~-r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
=-|||.|||||.-.|+.+++......+..+.=|.|.. +. .....+...+..++=.+||+++. ..++.||+
T Consensus 12 ~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k--~~if~QS~ 89 (314)
T COG0180 12 IQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK--STIFLQSE 89 (314)
T ss_pred CCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc--cEEEEccC
Confidence 3589999999999999999988866567777777652 21 33455666666677778999976 35788998
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHHHhh
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIYINR 128 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r 128 (736)
..+ +++++-.| -|..+-.+++.+-
T Consensus 90 v~e-~~eLa~~l-------~~~~~~gel~r~~ 113 (314)
T COG0180 90 VPE-HAELAWLL-------SCVTNFGELERMT 113 (314)
T ss_pred chH-HHHHHHHH-------HccCcHHHHHhhc
Confidence 876 66655333 4555555555443
No 306
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.48 E-value=0.051 Score=57.25 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred cccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEee-ecCCeecchhhhhhh-hhccccCCCCCCCcccHH
Q psy9410 217 ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKL-LEKKIVDGWDDPRMPTLI 294 (736)
Q Consensus 217 ~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l-~~~g~klSKr~~~~~-v~~~~~~gwddpr~~tl~ 294 (736)
.+.++++-|.|-..|...-.-+.+.++. ..|..+....| .++|.|||||..+.. | .-=|+|. ++.
T Consensus 150 l~~~l~~~G~DQ~~~i~~~rd~a~r~~~------~~~~~l~~~ll~~l~G~KMSKS~~~~~~i-----~l~dsp~--~i~ 216 (269)
T cd00805 150 LDVDLQLGGSDQRGNITLGRDLIRKLGY------KKVVGLTTPLLTGLDGGKMSKSEGNAIWD-----PVLDSPY--DVY 216 (269)
T ss_pred HhCCeeEecHHHHHHHHHHHHHHHHhCC------CCcEEEeeccccCCCCCcccCCCCCcccc-----cCCCCHH--HHH
Confidence 4457778887766666666666666765 33433322223 468999999986532 1 1113443 677
Q ss_pred HHHHcCCCHHHHHHHHHHc
Q psy9410 295 GMRRRGYTPESIKLFCKRI 313 (736)
Q Consensus 295 ~l~~~G~~peai~~~~~~~ 313 (736)
...++-+++.. .+|+..+
T Consensus 217 ~Ki~~a~~~~v-~~~l~~~ 234 (269)
T cd00805 217 QKIRNAFDPDV-LEFLKLF 234 (269)
T ss_pred HHHHcCCcHHH-HHHHHHH
Confidence 77777777754 4455544
No 307
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=95.47 E-value=0.007 Score=63.22 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=34.6
Q ss_pred cccCcchhHhhCcccccccccc----cceee-cccCccCccchhhcCccCce
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAK----HMHTI-FSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~----~~~~~-~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
.-..++-|...||.|++..... ..... +.++|++|+.|+++||++++
T Consensus 167 ~~~~r~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 167 LFSERGWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred HhcCCchhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCce
Confidence 3457789999999999853211 11222 37899999999999999874
No 308
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=95.39 E-value=0.0058 Score=63.05 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=32.5
Q ss_pred eccccccCcchhHhhCcccccc----------------ccccc------c-ee----ecccCccCccchhhcCccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAII----------------GAAKH------M-HT----IFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~----------------~~~~~------~-~~----~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.....||.||.|..+||..... .+... . .. .....|+.||.|..+||.+
T Consensus 146 ~~~~~CI~Cg~C~saCP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 146 YELDRCIECGCCVAACGTKQMREDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKD 221 (239)
T ss_pred hchhhccccchhHhhCCCCccCCCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCC
Confidence 3456899999999999953210 01100 0 00 1234799999999999987
No 309
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=95.38 E-value=0.0065 Score=64.92 Aligned_cols=27 Identities=33% Similarity=0.752 Sum_probs=24.0
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+.++...|++||.|+.+||++|+...
T Consensus 76 ~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 102 (295)
T TIGR02494 76 RIIIRREKCTHCGKCTEACPSGALSIV 102 (295)
T ss_pred ceeechhhcCchhHhhccCcHhHHhhh
Confidence 467889999999999999999999763
No 310
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=95.36 E-value=0.0044 Score=63.62 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=31.9
Q ss_pred ccccccCcchhHhhCccccccc-----------------cccc---c---eee----cccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG-----------------AAKH---M---HTI----FSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~-----------------~~~~---~---~~~----~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...||.||.|..+||.-.... +... . ..+ ....|..||.|..+||.+
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 142 GLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKG 216 (235)
T ss_pred hhhhCcccccccccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCC
Confidence 4567999999999999632110 0000 0 000 134799999999999998
No 311
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=95.33 E-value=0.0097 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.798 Sum_probs=21.6
Q ss_pred eeccccccCcchhHhhCcccccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.++.+.|++||.|+.+||.++|.+.
T Consensus 41 ~~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 41 APRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred cCCCCcCcChhHHHHhcCcccCEEE
Confidence 4467899999999999999999753
No 312
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.28 E-value=0.011 Score=63.73 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=22.4
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+|...|.+|+.|+.+||.+||.+.
T Consensus 284 ~~~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 284 IDFDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred ecCCcccCcCcCchhhhCCHhheEec
Confidence 34577899999999999999999864
No 313
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=95.16 E-value=0.0091 Score=66.69 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=33.8
Q ss_pred ccCcchhHhhCcccccc---cccccce-eec---------------------ccCccCccchhhcCccCceee
Q psy9410 608 CIGCTLCIQSCPVDAII---GAAKHMH-TIF---------------------SKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~ai~---~~~~~~~-~~~---------------------~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
...+.-|..+||++++. .+.+... ..+ ..+|++|+.|+.+||++ +..
T Consensus 178 ~~re~~C~~~CP~g~~qs~m~d~~tl~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~g-i~~ 249 (434)
T TIGR02745 178 WMREQFCIYMCPYARIQSVMFDKDTLIVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTG-IDI 249 (434)
T ss_pred eeccchhhhhCCHHHHHHHhccCCcceEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCC-CEe
Confidence 77889999999999875 2222111 111 46899999999999999 443
No 314
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.1 Score=63.05 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHhc--CCEEEEEeeC-------------------------CCcccc-------cHHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYKY--NGLCNLRFDD-------------------------TNPLKE-------NKEY 69 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~~--~G~~ilR~eD-------------------------td~~r~-------~~~~ 69 (736)
||..||.+|||||-+-++-+.+-|.+ .|..+-+.=+ ...+.. ..++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 69999999999999999999988842 2433333311 111111 2467
Q ss_pred HHHHHHHHHHcCC--CCCCCCCccccc--cccHHHHHHHHHHHHHcCCCcc
Q psy9410 70 VNSIIKTIKWLNF--NWDKVKKRIYYA--SDYFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 70 ~~~i~~dl~wLGi--~~d~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~ 116 (736)
++...++++.||+ +|+. +|.+ -++.+.......+|.++|++|.
T Consensus 137 v~~q~~~f~RLGv~~Dw~n----pY~Tmd~~ye~~~~~~f~~~~~kGllyr 183 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWEN----PYKTMDPSYEESVWWAFKELYEKGLLYR 183 (933)
T ss_pred HHHHHHHHHhheEeeccCC----CeecCCHHHHHHHHHHHHHHHHCCCeec
Confidence 7888899999998 6775 5444 3444555566789999999994
No 315
>PRK02651 photosystem I subunit VII; Provisional
Probab=95.09 E-value=0.014 Score=49.48 Aligned_cols=25 Identities=28% Similarity=0.767 Sum_probs=21.5
Q ss_pred eeccccccCcchhHhhCcccccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..+...|++|+.|+.+||.++|.+.
T Consensus 42 ~~~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 42 SPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred cCCCCcCCChhhhhhhcCCCceEEE
Confidence 3466899999999999999999863
No 316
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=95.08 E-value=0.0095 Score=64.25 Aligned_cols=28 Identities=32% Similarity=0.775 Sum_probs=24.6
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
.+.+|.+.|++||.|+.+||++|+....
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 4678999999999999999999997654
No 317
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=95.06 E-value=0.0096 Score=65.99 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=37.4
Q ss_pred cceecccccc-CcchhHhhCccccc---ccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCI-GCTLCIQSCPVDAI---IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci-~Cg~C~~~CP~~ai---~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+..|...|. +|..|.+.||.... .....+....+...|+.|+.|+++||.....+.-
T Consensus 205 ~v~~~~~~~~~r~~~c~k~cp~~~~~~v~v~p~~~~~~~~~~CI~C~~CidaCd~~~~~~~~ 266 (386)
T COG0348 205 KVNYDDKRGCPRCKRCKKVCPEPIPLWVQVCPAGIDIRDGLECIGCGRCIDACDDDMLKFNL 266 (386)
T ss_pred EEecccccCCcccccccccCCccccceeEecccccccccccccccHhhHhhhCCHHhheecc
Confidence 3445554554 79999999998653 1212211111112599999999999998877653
No 318
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=95.01 E-value=0.009 Score=66.92 Aligned_cols=47 Identities=26% Similarity=0.780 Sum_probs=31.4
Q ss_pred cccccCcchhHhhCcccccccc----c-----------ccce-----eecccCccCccchhhcCccC
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGA----A-----------KHMH-----TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~----~-----------~~~~-----~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
-+.|++||.|..+||.-..... . ++.. ......|+.|+.|..+||.+
T Consensus 22 ~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 22 LRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSG 88 (407)
T ss_pred HHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCC
Confidence 3579999999999995321100 0 0000 01135799999999999997
No 319
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.00 E-value=0.0094 Score=61.31 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=23.7
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
...+|+..|-|||.|.-+||.+||...
T Consensus 93 ~~~~~~~lC~GCgaC~~~CP~~AI~~~ 119 (284)
T COG1149 93 KPVLNPDLCEGCGACSIVCPEPAIEEE 119 (284)
T ss_pred ceecCcccccCcccceeeCCCcccccc
Confidence 456789999999999999999999654
No 320
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.99 E-value=0.011 Score=69.16 Aligned_cols=26 Identities=35% Similarity=0.792 Sum_probs=23.7
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+|.+.|++|+.|+.+||.+||.+.
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred EEEecccCcChhHHHhhcCcCceEec
Confidence 56889999999999999999999864
No 321
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=94.95 E-value=0.0099 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.842 Sum_probs=22.5
Q ss_pred eeccccccCcchhHhhCcccccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.++.+.|++||.|+.+||.+||.+.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ecCCccCcChhhhhhhCCHhHEecC
Confidence 5789999999999999999999753
No 322
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=94.93 E-value=0.011 Score=60.00 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=31.9
Q ss_pred ccccccCcchhHhhCccccccc----------------ccc-cc-----ee-e---cccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG----------------AAK-HM-----HT-I---FSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~----------------~~~-~~-----~~-~---~~~~C~~Cg~Cv~~CP~~ 651 (736)
.-..||.||.|+.+||.-.... +.. .. .. . ....|..|+.|+++||.+
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred hhhhccccchhhhhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCC
Confidence 3468999999999999632211 110 00 00 0 124699999999999998
No 323
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=94.90 E-value=0.01 Score=68.06 Aligned_cols=48 Identities=27% Similarity=0.627 Sum_probs=32.7
Q ss_pred ccccccCcchhHhhCcccccc---------------ccc-ccc------eeecccCccCccchhhcCccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAII---------------GAA-KHM------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~---------------~~~-~~~------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+...|+.||.|..+||..... .+. +.. .......|+.||.|..+||.+
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKE 200 (486)
T ss_pred CchhcccCccccccCCCCccccCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCC
Confidence 457899999999999975320 000 000 011235799999999999988
No 324
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=94.89 E-value=0.0095 Score=62.84 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=34.2
Q ss_pred cCcchhHhhCcccccccccc--c--cee-ecccCccCccchhhcCccCcee
Q psy9410 609 IGCTLCIQSCPVDAIIGAAK--H--MHT-IFSKLCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 609 i~Cg~C~~~CP~~ai~~~~~--~--~~~-~~~~~C~~Cg~Cv~~CP~~Ai~ 654 (736)
+..+-|...||.+++..... . ... .+.++|++|+.|+++||.+++.
T Consensus 176 ~~r~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 176 VEHGWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred cCCchhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 45678999999998853211 1 122 5678999999999999998753
No 325
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.84 E-value=0.0095 Score=67.00 Aligned_cols=28 Identities=36% Similarity=0.897 Sum_probs=24.0
Q ss_pred cceeccccccCcchhHhhCcc-ccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPV-DAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~-~ai~~~~ 627 (736)
...++.+.|++|+.|+.+||. +||.+..
T Consensus 371 ~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 371 TPEVIEEECVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred eEEechhhCcccchHHhhCCCCCCEEEec
Confidence 356789999999999999999 9997653
No 326
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=94.81 E-value=0.11 Score=56.48 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=49.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~ 93 (736)
+-..=.|||.+||||+- ++.++..-...|...++=|.|.- ...........+..++..+|++++. ....+
T Consensus 33 v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k--~~i~~ 109 (329)
T PRK08560 33 AYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDK--TEFVL 109 (329)
T ss_pred EEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhh--eEEEe
Confidence 44556788999999976 55555555545667666676642 1122345556677788889999875 12677
Q ss_pred ccccHH
Q psy9410 94 ASDYFD 99 (736)
Q Consensus 94 ~Se~~~ 99 (736)
||+...
T Consensus 110 qS~~~~ 115 (329)
T PRK08560 110 GSEFQL 115 (329)
T ss_pred cchhhc
Confidence 888754
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=94.80 E-value=0.01 Score=69.58 Aligned_cols=29 Identities=41% Similarity=0.928 Sum_probs=25.4
Q ss_pred CcccceeccccccCcchhHhhCccccccc
Q psy9410 597 SRCCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 597 ~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
....+.+.++.|+|||.|++-|||+||.+
T Consensus 40 ~~~~~~~~e~~c~~c~~c~~~cp~~a~~i 68 (590)
T PRK13409 40 DDGKPVISEELCIGCGICVKKCPFDAISI 68 (590)
T ss_pred CCCCceeeHhhccccccccccCCcceEEE
Confidence 34567899999999999999999999964
No 328
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=94.79 E-value=0.0062 Score=58.36 Aligned_cols=28 Identities=32% Similarity=0.819 Sum_probs=23.7
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
.-++.++.|+||+.|+..||+++|.+..
T Consensus 139 mhtv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 139 MHTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred HHHHHHHHhcCCCcccCCCCCCceeeee
Confidence 3456788999999999999999998753
No 329
>COG1146 Ferredoxin [Energy production and conversion]
Probab=94.77 E-value=0.014 Score=47.66 Aligned_cols=29 Identities=34% Similarity=0.708 Sum_probs=24.9
Q ss_pred ccceeccccccCcchhHhhCccccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..+.++.+.|++||.|+.+||.+||.+..
T Consensus 34 ~~~~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 34 KPVVARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred ceeEeccccCccchhhhhhCCcceEEEec
Confidence 34678899999999999999999997653
No 330
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.73 E-value=0.013 Score=73.42 Aligned_cols=26 Identities=31% Similarity=0.760 Sum_probs=22.2
Q ss_pred cceeccccccCcchhHhhCccc--cccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVD--AIIG 625 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~--ai~~ 625 (736)
.+.++.+.|++||.|+.+||.+ ||.+
T Consensus 733 ~i~i~~~~C~gCg~Cv~~CP~~~~Al~m 760 (1165)
T TIGR02176 733 RIQISPLDCTGCGNCVDICPAKEKALVM 760 (1165)
T ss_pred eEEeccccCcCccchhhhcCCCCccccc
Confidence 3568899999999999999995 7754
No 331
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=94.73 E-value=0.0083 Score=48.82 Aligned_cols=21 Identities=33% Similarity=0.880 Sum_probs=19.1
Q ss_pred CccCccchhhcCccCceeecc
Q psy9410 637 LCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 637 ~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.|..|+.|+++||++||+...
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~ 21 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGED 21 (67)
T ss_pred CCcchhHHHHhCcHhhccCCC
Confidence 499999999999999999873
No 332
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=94.66 E-value=0.013 Score=61.46 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=30.6
Q ss_pred ccccCcchhHhhCccccc---------------cc--cc-cc--c---eee----cccCccCccchhhcCccC
Q psy9410 606 NKCIGCTLCIQSCPVDAI---------------IG--AA-KH--M---HTI----FSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai---------------~~--~~-~~--~---~~~----~~~~C~~Cg~Cv~~CP~~ 651 (736)
..||.||.|..+||.-.. .+ +. +. . ..+ ....|..|+.|..+||.+
T Consensus 187 ~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 187 YECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKG 259 (276)
T ss_pred hhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCC
Confidence 479999999999994211 00 10 00 0 001 235799999999999998
No 333
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=94.54 E-value=0.016 Score=61.90 Aligned_cols=46 Identities=28% Similarity=0.749 Sum_probs=31.4
Q ss_pred ccCcchhHhhCcccccc------------ccc------------cc-----ceeecccCccCccchhhcCccCceee
Q psy9410 608 CIGCTLCIQSCPVDAII------------GAA------------KH-----MHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~ai~------------~~~------------~~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
|++|+.|+. ||.++-. ++. .+ ........|++||.|...||.+ |.+
T Consensus 295 Ct~C~yC~P-CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq~-l~I 369 (391)
T COG1453 295 CTGCRYCLP-CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQH-LDI 369 (391)
T ss_pred CccccccCc-CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccchhhhhhhcCCCc-CcH
Confidence 999999999 9986320 000 00 0112356799999999999998 443
No 334
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=94.50 E-value=0.0082 Score=64.80 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=32.6
Q ss_pred cccccCcchhHhhCccccccccccc-----ceeecccCccCccchhhcCccCce
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~-----~~~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
-+.|.+|+.|...||.- ..+.... ....-...|..||.|...||..+-
T Consensus 13 l~iC~~C~~C~~~Cpvf-Pa~~~~~~~~~~d~~~la~lChnC~~C~~~CPy~pP 65 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVF-PAAQGRPDLTRGDLRHLAHLCHDCQSCWHDCQYAPP 65 (372)
T ss_pred hHhCcCcCCccccCCCc-cccccccccCHHHHHHHHHHCcCcccccccCcCCCC
Confidence 36899999999999973 1111100 000013579999999999999763
No 335
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=94.49 E-value=0.017 Score=59.63 Aligned_cols=26 Identities=46% Similarity=1.034 Sum_probs=23.2
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++...|++|+.|+.+||.+|+...
T Consensus 172 ~~i~~~~C~~Cg~C~~~CP~~AI~~~ 197 (234)
T TIGR02700 172 AFIRLLKCVGCGKCKEACPYNAIHGG 197 (234)
T ss_pred eEEchhhCCccchHHhhCCCCceecC
Confidence 46788999999999999999999865
No 336
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.41 E-value=0.024 Score=69.34 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred ccceeccccccCcchhHhhCccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..++++ +.|++||.|+.+||+++-..
T Consensus 920 ~~~~~~-~~C~~CG~C~~~CP~~~~py 945 (1019)
T PRK09853 920 QIVHLD-AMCNECGNCAQFCPWNGKPY 945 (1019)
T ss_pred ceEEcC-ccCccccchhhhCCCCCCcc
Confidence 344554 99999999999999976543
No 337
>PRK13795 hypothetical protein; Provisional
Probab=94.36 E-value=0.014 Score=68.88 Aligned_cols=54 Identities=33% Similarity=0.757 Sum_probs=38.9
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+....|..|+. |. ..||.++... ......+.++.+.|++|+.|+
T Consensus 578 ~~~~~C~~Cg~--C~-------------~~CP~~ai~~---------------------~~~~~~~~id~~~C~~Cg~C~ 621 (636)
T PRK13795 578 RRAAECVGCGV--CV-------------GACPTGAIRI---------------------EEGKRKISVDEEKCIHCGKCT 621 (636)
T ss_pred EccccCCCHhH--HH-------------HhCCcccEEe---------------------ecCCceEEechhhcCChhHHH
Confidence 45678988884 66 7898775320 011123567889999999999
Q ss_pred hhCccccccc
Q psy9410 616 QSCPVDAIIG 625 (736)
Q Consensus 616 ~~CP~~ai~~ 625 (736)
.+||.+++..
T Consensus 622 ~aCP~~a~~~ 631 (636)
T PRK13795 622 EVCPVVKYKD 631 (636)
T ss_pred hhcCCCeeEe
Confidence 9999988864
No 338
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.35 E-value=0.017 Score=60.65 Aligned_cols=49 Identities=39% Similarity=0.858 Sum_probs=36.1
Q ss_pred CcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHh
Q psy9410 537 PQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQ 616 (736)
Q Consensus 537 ~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~ 616 (736)
.+..|..|+ .|+ .+||+++.. ... ..+.+|.++|++||.|+.
T Consensus 170 ~~E~c~gc~--~cv-------------~~C~~gAI~----------------------~~~-~~l~id~~~Ci~Cg~Ci~ 211 (317)
T COG2221 170 DEELCRGCG--KCV-------------KVCPTGAIT----------------------WDG-KKLKIDGSKCIGCGKCIR 211 (317)
T ss_pred CHHHhchhH--hHH-------------HhCCCCcee----------------------ecc-ceEEEehhhccCccHHhh
Confidence 345678888 676 889999853 001 346789999999999999
Q ss_pred hCccccc
Q psy9410 617 SCPVDAI 623 (736)
Q Consensus 617 ~CP~~ai 623 (736)
+||..+.
T Consensus 212 ~Cp~~~~ 218 (317)
T COG2221 212 ACPKAAF 218 (317)
T ss_pred hCChhhc
Confidence 9994333
No 339
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=94.32 E-value=0.03 Score=67.40 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=19.8
Q ss_pred cccccCcchhHhhCcccccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
...|+.||.|+.+||+||+...
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSS 224 (819)
T ss_pred cccccccCcHHHhCCCCccccC
Confidence 5689999999999999999764
No 340
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=94.30 E-value=0.013 Score=63.49 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=31.1
Q ss_pred cccccCcchhHhhCccccccccccc-ceeec----ccCccCccchhhcCcc
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKH-MHTIF----SKLCTGCDLCIKKCPV 650 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~-~~~~~----~~~C~~Cg~Cv~~CP~ 650 (736)
-+.|.+|+.|...||.- ..+.+.. ....+ .+.|..||.|...||+
T Consensus 32 ~~iC~~Cr~C~~~Cpvf-P~l~~r~~~~~~d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 32 MQICNACRYCEGFCAVF-PAMTRRLEFGKADIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred hHhCCCCCCccccCCCc-hhhhhhhcCChhhhHHHHHhCcCcccccccCcC
Confidence 47899999999999973 2111110 01111 2379999999999998
No 341
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.26 E-value=0.019 Score=65.37 Aligned_cols=28 Identities=36% Similarity=0.666 Sum_probs=24.7
Q ss_pred ccceeccccccCcchhHhhCcccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
....+|+..|+|||.|+.+||+.+|...
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~~~~ 628 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAIKEG 628 (640)
T ss_pred CceeecccccccchhhhhcCchhheecc
Confidence 4578899999999999999999999754
No 342
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.25 E-value=0.06 Score=66.22 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=55.2
Q ss_pred CchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----c------------------------------------ccccHH
Q psy9410 31 LHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----P------------------------------------LKENKE 68 (736)
Q Consensus 31 lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----~------------------------------------~r~~~~ 68 (736)
|||||+++.++.+.+||. ..|.-+++.-+.| | ......
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999984 3466666532222 1 111234
Q ss_pred HHHHHHHHHHHcCC--CCCCCCCccccccccHHHHHHHH----HHHHHcCCCcc
Q psy9410 69 YVNSIIKTIKWLNF--NWDKVKKRIYYASDYFDILYKIA----EYLIISGDAYV 116 (736)
Q Consensus 69 ~~~~i~~dl~wLGi--~~d~gp~~~~~~Se~~~~~~~~a----~~Li~~g~aY~ 116 (736)
|.+.+.++++.||+ +|+. .+.+.+ +.|.+++ .+|.++|++|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r----~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRR----EFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCC----CeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 55778999999997 5765 666655 4455544 78999999994
No 343
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=94.24 E-value=0.012 Score=65.40 Aligned_cols=48 Identities=23% Similarity=0.625 Sum_probs=33.3
Q ss_pred cccccCcchhHhhCcccccc--cccccc---------------ee--ecccCccCccchhhcCccCc
Q psy9410 605 ENKCIGCTLCIQSCPVDAII--GAAKHM---------------HT--IFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~--~~~~~~---------------~~--~~~~~C~~Cg~Cv~~CP~~A 652 (736)
.++|++||.|..+||.-... ..+.+. .. .....|..|+.|+..||.+.
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHhcCCCCcccCcCCCccccCCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCC
Confidence 46899999999999985543 111110 00 01246999999999999983
No 344
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=94.21 E-value=0.027 Score=59.67 Aligned_cols=57 Identities=25% Similarity=0.551 Sum_probs=47.4
Q ss_pred ceeccccccCc--chhHhhCccccccc-ccccceeecccCccCccchhhcCccCceeecc
Q psy9410 601 AIIKENKCIGC--TLCIQSCPVDAIIG-AAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 601 ~~~d~~~Ci~C--g~C~~~CP~~ai~~-~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..+-+-.|.+| -.|+.+||.+|+.. +++++..++.++|.+-..|+..||..-+.+.-
T Consensus 176 MmYLPRiCeHCLNPsCvasCPsgaiYKReEDGIVLiDQd~CRGwR~CvsgCPYKKvYfNw 235 (513)
T COG1140 176 MMYLPRLCEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKVYFNW 235 (513)
T ss_pred HHhhHHHHhhcCCcHHhhcCCcccccccccCceEEeecccccchhhhhcCCCcceeEeec
Confidence 44556789999 58999999999974 45677888999999999999999998776643
No 345
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=94.18 E-value=0.043 Score=40.03 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.6
Q ss_pred HHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCc
Q psy9410 552 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII 586 (736)
Q Consensus 552 ~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~ 586 (736)
+...+++|+.+|..|+.++.|.|+.++..+|+...
T Consensus 5 lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~ 39 (41)
T PF10588_consen 5 LELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQ 39 (41)
T ss_dssp HHHHHTT----TTT-TTGGG-HHHHHHHHH-S---
T ss_pred HHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcC
Confidence 45678899999999999999999999999998643
No 346
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.14 E-value=0.018 Score=63.66 Aligned_cols=26 Identities=42% Similarity=0.974 Sum_probs=22.7
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++||.|+.+||.+|+...
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred cccCcccCcCccCHHHhCCCChhhhh
Confidence 45788999999999999999999653
No 347
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=94.03 E-value=0.16 Score=54.97 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCCCcCchhHHHHHHHHHHHH-HhcCCEEEEEeeCCCc------ccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELA-YKYNGLCNLRFDDTNP------LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~A-r~~~G~~ilR~eDtd~------~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
=.|||.+||||.-+++-+|..- ..++.++++=|.|.-. .....++...+..++-.+|++++. -..++||+.
T Consensus 10 iqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k--~~if~qS~v 87 (332)
T PRK12556 10 IKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPED--VIFYRQSDV 87 (332)
T ss_pred ECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccc--eEEEECCCc
Confidence 3588999999999999988544 4566655555655421 111234445566677788999974 247889997
Q ss_pred HH
Q psy9410 98 FD 99 (736)
Q Consensus 98 ~~ 99 (736)
.+
T Consensus 88 ~~ 89 (332)
T PRK12556 88 PE 89 (332)
T ss_pred hH
Confidence 65
No 348
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.81 E-value=0.024 Score=46.56 Aligned_cols=17 Identities=41% Similarity=1.337 Sum_probs=9.0
Q ss_pred cccccCcchhHhhCccc
Q psy9410 605 ENKCIGCTLCIQSCPVD 621 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ 621 (736)
...|+|||+|+++||.+
T Consensus 49 ~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 49 EGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CccCCCcChHhhhcCCC
Confidence 34455555555555543
No 349
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=93.34 E-value=0.031 Score=56.14 Aligned_cols=48 Identities=29% Similarity=0.737 Sum_probs=40.0
Q ss_pred ceeccc-cccCcchhHhhCcccccccccccceeecccCccCccchhhcCccC
Q psy9410 601 AIIKEN-KCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 601 ~~~d~~-~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
..+++. .|.||+.|...||..+|.... ......+|+.||.|.-.||..
T Consensus 184 ~ll~qg~~C~G~~TC~A~CP~~ai~c~G---c~g~~~~~~~~Ga~~v~~~rs 232 (247)
T COG1941 184 CLLEQGLPCMGCGTCAASCPSRAIPCRG---CRGNIPRCIKCGACFVSCPRS 232 (247)
T ss_pred eeecCCCcccCchhhhccCCccCCcccC---CcCCcccchhhhHHHHHHhHH
Confidence 345566 899999999999999998762 456668999999999999876
No 350
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.31 E-value=0.035 Score=45.59 Aligned_cols=17 Identities=41% Similarity=1.237 Sum_probs=13.2
Q ss_pred CccCccchhhcCccCcee
Q psy9410 637 LCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 637 ~C~~Cg~Cv~~CP~~Ai~ 654 (736)
.|++||+|+.+||++ |.
T Consensus 51 ~CVgCgrCv~~CP~~-Id 67 (69)
T PF13746_consen 51 DCVGCGRCVRVCPAG-ID 67 (69)
T ss_pred cCCCcChHhhhcCCC-CC
Confidence 035899999999998 43
No 351
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.27 E-value=0.12 Score=63.71 Aligned_cols=58 Identities=16% Similarity=0.085 Sum_probs=45.4
Q ss_pred EEeee-cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 258 FSRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 258 f~~l~-~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
.+++. .+|+|||||+++.+ +..++.++ |.++++|.|++.. -...+..|+++.+...++
T Consensus 601 hG~vl~~~G~KMSKSkGNvI---------------~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 601 HGFTLDEKGRKMSKSLGNVV---------------DPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred cceEECCCCCCcCCCCCCCC---------------CHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 44444 48999999998754 67788776 9999999999988 566778899998877544
No 352
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.14 E-value=0.14 Score=63.11 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=38.7
Q ss_pred cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHH
Q psy9410 263 LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 329 (736)
Q Consensus 263 ~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~ 329 (736)
.+|.|||||+||.+ +..++.++ |.++++|.|++. +-...+..|+.+.|..
T Consensus 588 ~~G~KMSKSlGNvI---------------dP~~ii~~-yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 588 GKGRKMSKSLGNVI---------------DPQDVIKK-YGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred CCCCCCCCCCCCcC---------------CHHHHHHh-cChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 48999999998755 56677765 999999998886 5556677777776654
No 353
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=92.95 E-value=0.044 Score=57.39 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.2
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
...+...|+.|+.|+.+||.+++....
T Consensus 194 ~v~~~~~C~~C~~C~~~Cp~~AI~~~~ 220 (259)
T cd07030 194 VVEDLEDCSLCKLCERACDAGAIRVGW 220 (259)
T ss_pred EEeChhhCcCchHHHHhCCCCcEEEEe
Confidence 456788999999999999999998754
No 354
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=92.93 E-value=0.02 Score=55.91 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=32.2
Q ss_pred cccccCcchhHhhCccccccccccc-----------c-ee---ecccCccCccchhhcCccCc
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKH-----------M-HT---IFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~-----------~-~~---~~~~~C~~Cg~Cv~~CP~~A 652 (736)
-..|.+||.|...||.+-.. +-.. . .. -..=.|+.|..|..-||.+.
T Consensus 38 l~~C~QCG~CT~sCPs~r~t-~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v 99 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFT-DYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGV 99 (195)
T ss_pred HhHhhccCcccCCCCCcccC-CCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCC
Confidence 45699999999999986442 1000 0 00 11225999999999999884
No 355
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.66 E-value=0.12 Score=64.33 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=46.2
Q ss_pred cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccCC
Q psy9410 263 LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDI 337 (736)
Q Consensus 263 ~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~~ 337 (736)
.+|+|||||++|.+ +..++.++ |.++|+|.|++..+....+..|+++.+.+..+..+++
T Consensus 588 ~~G~KMSKSlGNvI---------------dP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~k 646 (975)
T PRK06039 588 EDGQKMSKSLGNYV---------------DPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLT 646 (975)
T ss_pred CCCCCcCCCCCCcC---------------CHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHH
Confidence 48999999998754 67788877 9999999999998887778889998854444443443
No 356
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=92.58 E-value=0.98 Score=50.48 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=41.8
Q ss_pred EEECCCCCC-cCchhHHHHHHHHHHHHHhcCCEEEEEeeC-C----Ccc-----c------ccHHHHHHHHHHHHHcCCC
Q psy9410 21 TRFAPEPNG-YLHIGHAKSIFINFELAYKYNGLCNLRFDD-T----NPL-----K------ENKEYVNSIIKTIKWLNFN 83 (736)
Q Consensus 21 ~RfaP~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilR~eD-t----d~~-----r------~~~~~~~~i~~dl~wLGi~ 83 (736)
.-..=.||| .|||||+-+. .....-+..|.+.++=+-| | ||. | ........|...+.. |++
T Consensus 36 iy~G~dPT~~sLHlGhlv~l-~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld 113 (410)
T PRK13354 36 LYLGFDPTAPSLHIGHLVPL-MKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFD 113 (410)
T ss_pred EEEcccCCCCCcchhhHHHH-HHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcC
Confidence 555667898 5999997664 3333334456655555522 2 343 2 233444555554433 565
Q ss_pred CCCCCCccccccccHHH
Q psy9410 84 WDKVKKRIYYASDYFDI 100 (736)
Q Consensus 84 ~d~gp~~~~~~Se~~~~ 100 (736)
++. ..+..+|+.+..
T Consensus 114 ~~k--~~i~~ns~w~~~ 128 (410)
T PRK13354 114 FEK--TEIVNNSDWLSK 128 (410)
T ss_pred ccc--eEEEECcccccc
Confidence 542 136777777653
No 357
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.45 E-value=0.096 Score=62.55 Aligned_cols=60 Identities=15% Similarity=0.011 Sum_probs=46.3
Q ss_pred EEEeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 257 EFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 257 ~f~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
..|++.. +|+|||||++|.+ ++.++.++ |-++++|-|++..|-...+...+-+.++.+.|
T Consensus 568 ~qGmVl~~~g~KMSKSKgN~v---------------~p~~~i~~-yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~r 628 (814)
T COG0495 568 TQGMVLGEEGEKMSKSKGNVV---------------DPEEAVEK-YGADTVRLYIMFAAPPEQDLEWSESGVEGARR 628 (814)
T ss_pred ccceEEecCCCccccccCCCC---------------CHHHHHHH-hCchHHHHHHHhhCChhhCCCCChhhhHHHHH
Confidence 4556655 7999999998754 78888887 99999999999999877666666555555544
No 358
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.28 E-value=0.091 Score=61.84 Aligned_cols=22 Identities=55% Similarity=1.195 Sum_probs=18.9
Q ss_pred ceeccccccCcchhHhhCccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai 623 (736)
..++. .|++||.|+.+||.+||
T Consensus 574 ~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 574 AVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceeCC-CCcCHHHHHhhCccccC
Confidence 45676 79999999999999875
No 359
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=92.26 E-value=0.39 Score=52.11 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
.|||.+||||.-+++.++..-+..+..+++ |.|.- ...+..++...+..++-.+|++++. ...++||+..
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k--~~i~~qS~~~ 86 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAK--STIFIQSQIP 86 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhH--eEEEECCcch
Confidence 467999999999999998544444445544 43321 1112345555666677788999874 2467889875
Q ss_pred H
Q psy9410 99 D 99 (736)
Q Consensus 99 ~ 99 (736)
+
T Consensus 87 e 87 (333)
T PRK12282 87 E 87 (333)
T ss_pred H
Confidence 4
No 360
>PLN02486 aminoacyl-tRNA ligase
Probab=91.85 E-value=0.65 Score=51.28 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=51.4
Q ss_pred EEECCCCCC-cCchhHHHHHHHHHHHHHhcCCEEEEEeeCC----C---cccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 21 TRFAPEPNG-YLHIGHAKSIFINFELAYKYNGLCNLRFDDT----N---PLKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 21 ~RfaP~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt----d---~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
+--.=.||| .|||||+-++.+.-.+.+..|..+++-|.|- . ...+..++......++..+|++++. ..++
T Consensus 76 vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k--t~I~ 153 (383)
T PLN02486 76 LYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER--TFIF 153 (383)
T ss_pred EEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc--eEEE
Confidence 444567888 5999999999877777777778888878872 1 1122345556677777789999875 1344
Q ss_pred cccccH
Q psy9410 93 YASDYF 98 (736)
Q Consensus 93 ~~Se~~ 98 (736)
.++++.
T Consensus 154 s~~~~~ 159 (383)
T PLN02486 154 SDFDYV 159 (383)
T ss_pred eccHHH
Confidence 555555
No 361
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=91.83 E-value=0.076 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=22.9
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
...+...|+.|+.|+.+||.+|+.+..
T Consensus 194 ~v~~~~~C~~C~~Ci~~CP~~AI~i~~ 220 (263)
T PRK00783 194 VVTDLLNCSLCKLCERACPGKAIRVSD 220 (263)
T ss_pred EEeChhhCCCchHHHHhCCCCceEEEE
Confidence 344778999999999999999998754
No 362
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=91.64 E-value=0.23 Score=62.10 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=44.2
Q ss_pred EEeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 258 FSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 258 f~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
.+.+.. +|.|||||+|+.+ +..++.++ |.++++|.||+..+....+..|+++.++..
T Consensus 528 hG~v~d~~G~KMSKSkGNvI---------------dP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~ 585 (1052)
T PRK14900 528 HPMVRDEKGQKMSKTKGNVI---------------DPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY 585 (1052)
T ss_pred cccEECCCCCCccCCCCCCC---------------CHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH
Confidence 344554 8999999998754 56677766 999999999998877777888998877553
No 363
>PLN02886 aminoacyl-tRNA ligase
Probab=91.61 E-value=0.42 Score=52.65 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=49.0
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC------cccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
=.|||.+||||.-.++-+|.--.. +...++=|.|.- ...+..++...+..++-.+|++++. -.++.||+..
T Consensus 53 iqPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~k--s~if~QS~v~ 129 (389)
T PLN02886 53 VQPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSK--ASVFVQSHVP 129 (389)
T ss_pred ECCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccc--eEEEEeCCCc
Confidence 457899999998888877765443 445445565542 1112334555566777788999874 1477899854
Q ss_pred HHHHHHH
Q psy9410 99 DILYKIA 105 (736)
Q Consensus 99 ~~~~~~a 105 (736)
+ +.+++
T Consensus 130 e-~~eL~ 135 (389)
T PLN02886 130 A-HAELM 135 (389)
T ss_pred h-hHHHH
Confidence 4 44443
No 364
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=91.56 E-value=0.055 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.602 Sum_probs=22.4
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++...|++|+.|+.+||.+.+..+
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~ 223 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchh
Confidence 45788999999999999999877654
No 365
>PLN02959 aminoacyl-tRNA ligase
Probab=91.56 E-value=0.21 Score=62.64 Aligned_cols=60 Identities=18% Similarity=0.072 Sum_probs=46.7
Q ss_pred eEEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 255 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 255 ~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
.+-.+++..+|+|||||+||.+ ++.++.++ |.++++|.|++..+-...+.+|++..+.+.
T Consensus 706 v~v~G~V~~~G~KMSKSkGNvI---------------~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~ 765 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNFL---------------TLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA 765 (1084)
T ss_pred EEEccEEecCCcCccccCCCcC---------------CHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH
Confidence 3356777889999999999755 77787776 999999999988776666777877655443
No 366
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=91.06 E-value=0.11 Score=58.77 Aligned_cols=93 Identities=25% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCCCceE-----------EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccC
Q psy9410 250 RPFPKQY-----------EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318 (736)
Q Consensus 250 ~~~p~~~-----------~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~ 318 (736)
.++|+|+ .|.|+++-.. -..+++++- ++. .++..++..||.|++|.+|+.++||+.+
T Consensus 218 ~nt~~q~~l~~~lg~~~P~~~H~~li~~-~~g~kLSKr--~~~---------~~~~~~~~~G~~~~al~~~~allg~~~~ 285 (472)
T COG0008 218 DNTPRQIWLYEALGWPPPVYAHLPLLLN-EDGKKLSKR--KGA---------VSIGEYRVEGWLPPALPNLLALLGRGYP 285 (472)
T ss_pred cCCHHHHHHHHHcCCCCCcEEEeeeeec-CCCCeecCc--cCc---------cccchhhhcCCCcHHHHHHHHHhcCCCC
Confidence 4667776 6778776665 443343321 122 3788899999999999999999999988
Q ss_pred CccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 319 DSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 319 ~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
...+....++..+. +++..+ ..+.+.+|..||.|.|
T Consensus 286 ~~~~e~f~~~~~~~~fd~~~~-~~~~~~fd~~kL~~~n 322 (472)
T COG0008 286 PEAIEIFSLEEGIKWFDLTIV-SKSPAAFDRKKLDWLN 322 (472)
T ss_pred hhhHHHHHHHHHHhhhhhhhh-hcccccccHHHhHhhh
Confidence 77777788888776 455554 5788899999999887
No 367
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.82 E-value=0.53 Score=51.82 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=48.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC----c---ccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN----P---LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd----~---~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
.|||.+||||.-.++-+|. ..+.++..++=|.|.- + .....+....+..++-.+|++++. ..+++||+..
T Consensus 10 qPSG~~HLGnylG~ik~wv-~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k--~~if~QS~v~ 86 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWV-KLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQ--ATLFIQSKVP 86 (398)
T ss_pred CCCCcchHHHHHHHHHHHH-HHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccc--eEEEECCCch
Confidence 5889999999999887766 3344666666566642 1 122345556677778889999964 2478889875
No 368
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.78 E-value=0.65 Score=49.04 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=43.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-----Cc-----------ccccHHHHHHHHHHHHHcCCC--CCC
Q psy9410 26 EPNG-YLHIGHAKSIFINFELAYKYNGLCNLRFDDT-----NP-----------LKENKEYVNSIIKTIKWLNFN--WDK 86 (736)
Q Consensus 26 ~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-----d~-----------~r~~~~~~~~i~~dl~wLGi~--~d~ 86 (736)
.||| .|||||.-. +.++..-+..|.+.++=|-|- || .....+....+..++..+|++ ++.
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 4889 799999988 555554444454444433221 22 222345566777888899997 432
Q ss_pred CCCccccccccHH
Q psy9410 87 VKKRIYYASDYFD 99 (736)
Q Consensus 87 gp~~~~~~Se~~~ 99 (736)
..++.||+...
T Consensus 86 --~~i~~ns~~~~ 96 (273)
T cd00395 86 --ATLFNNSDWPG 96 (273)
T ss_pred --eEEEEccccCC
Confidence 24777888764
No 369
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.34 E-value=0.52 Score=51.24 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=45.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC----Cc--ccccHHHHHHHHHHHHHcCCCCCCCCCccccccccHH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT----NP--LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD 99 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt----d~--~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~ 99 (736)
.|||.+||||.-.++-++..-.. ....++=|.|. +. .....++...+..++-.+|++++. ..+++||+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~-~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k--~~if~qS~~~~ 85 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQD-EYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEK--STIFVQSHVPE 85 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHh-cCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhh--eEEEEeCCCch
Confidence 58899999999977766642222 13333334433 11 122344555666777788999874 24778998654
Q ss_pred HHHHHH
Q psy9410 100 ILYKIA 105 (736)
Q Consensus 100 ~~~~~a 105 (736)
+.+++
T Consensus 86 -~~el~ 90 (333)
T PRK00927 86 -HAELA 90 (333)
T ss_pred -hHHHH
Confidence 34433
No 370
>PLN02943 aminoacyl-tRNA ligase
Probab=90.23 E-value=0.26 Score=61.04 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=41.5
Q ss_pred ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHH
Q psy9410 262 NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 329 (736)
Q Consensus 262 ~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~ 329 (736)
..+|+|||||+|+.+ ++.++.++ |.++++|.|++... ...+..|+++.|.+
T Consensus 578 ~~~G~KMSKS~GN~i---------------~p~~~i~~-ygaDalR~~l~~~~-~~~d~~fs~~~l~~ 628 (958)
T PLN02943 578 DSQGRKMSKTLGNVI---------------DPLDTIKE-FGTDALRFTLALGT-AGQDLNLSTERLTS 628 (958)
T ss_pred CCCCCcccCcCCCCC---------------CHHHHHHh-cCChHHHHHHHhCC-CCCCccccHHHHHH
Confidence 468999999998754 67788876 99999998888754 46788899888766
No 371
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=89.81 E-value=0.25 Score=50.61 Aligned_cols=34 Identities=32% Similarity=0.913 Sum_probs=30.6
Q ss_pred cC-cccCCCCCCCCchhHHHHHHcCcccCccCCCCh
Q psy9410 536 LP-QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGG 570 (736)
Q Consensus 536 ~~-p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~ 570 (736)
++ ..+|+.||+ .|+++|++++.+....+.|+...
T Consensus 147 lp~~lnCg~CG~-~C~~~a~~i~~g~~~~~~C~~~~ 181 (229)
T PRK14494 147 LPYNLNCGHCGF-NCKGFAKAIVKGEAKWDDCVSLS 181 (229)
T ss_pred CCCCCCCCccCc-CHHHHHHHHHcCCCCccCCccCC
Confidence 44 679999999 99999999999999999999765
No 372
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.44 E-value=1.1 Score=49.99 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHh-cCCEEEEEeeCC-------CcccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYK-YNGLCNLRFDDT-------NPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~-~~G~~ilR~eDt-------d~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
=.|||.+||||.-.++-||+-... .+...+.=|-|. ||++. .+....+..++-.+|++++. -..++||+
T Consensus 9 iqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~l-r~~~~e~aa~~LA~GlDPek--~~if~QSd 85 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARI-QRSTLEIAATWLAAGLDPER--VTFYRQSD 85 (431)
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHH-HHHHHHHHHHHHHhCCCccc--eEEEECCc
Confidence 468999999999999888877653 344555555554 33322 23344456667778999974 14778898
Q ss_pred cHHHHHHHH
Q psy9410 97 YFDILYKIA 105 (736)
Q Consensus 97 ~~~~~~~~a 105 (736)
--+ +.++.
T Consensus 86 vpe-h~EL~ 93 (431)
T PRK12284 86 IPE-IPELT 93 (431)
T ss_pred chh-HHHHH
Confidence 653 44544
No 373
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=89.39 E-value=0.33 Score=51.40 Aligned_cols=46 Identities=33% Similarity=0.706 Sum_probs=38.3
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChh----HHHHHHHHhc
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGR----KGIIKLAKYL 581 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~----~~l~~~~~~~ 581 (736)
+|.++|+.||++.||.+|-.|.++......||.-.. ..+.++...+
T Consensus 13 LPktNCg~Cg~~tCMaFAtkli~re~t~~dCp~L~~~kf~k~l~kl~eLl 62 (467)
T COG1456 13 LPKTNCGECGEATCMAFATKLIDREATPDDCPPLIKEKFAKKLEKLDELL 62 (467)
T ss_pred CcccCccccCchHHHHHHHHHhccccCcccCcccccHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999998765 4455554444
No 374
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=88.86 E-value=0.22 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=18.0
Q ss_pred eeccccccCcchhHhhCccccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai 623 (736)
.++...|+.||.|..+||.+..
T Consensus 405 ~~~~~~CieCG~C~~vCPs~Ip 426 (695)
T PRK05035 405 EYNLFDCIECGACAYVCPSNIP 426 (695)
T ss_pred hcChhhccccCcccccCCCCCc
Confidence 3456789999999999998743
No 375
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=88.69 E-value=0.3 Score=51.62 Aligned_cols=76 Identities=5% Similarity=-0.201 Sum_probs=50.0
Q ss_pred cCcCCccCccccCCC---CCcccceecccccc--CcchhHhhCccccccccc----ccceeecccCccCccchhhcC-cc
Q psy9410 581 LNKPIIPLNTIYGNE---KSRCCAIIKENKCI--GCTLCIQSCPVDAIIGAA----KHMHTIFSKLCTGCDLCIKKC-PV 650 (736)
Q Consensus 581 ~g~~~~~~~~~~~~~---~~~~~~~~d~~~Ci--~Cg~C~~~CP~~ai~~~~----~~~~~~~~~~C~~Cg~Cv~~C-P~ 650 (736)
.|++..|++|.+... ...+.+.++. .|. .|..|+..||.+++.++. ....+.++..|+.|..|+..| -.
T Consensus 168 kG~Gk~HAKwsPv~ta~yr~~P~I~i~~-~~~~~~~~~~~~~cP~~Vf~i~~~~~~~~~~V~~~~~ct~crec~~~~~~~ 246 (291)
T cd07032 168 KGIGKDHAKFSPVATASYRLLPEITLLK-PITGEDAEKLQKCFPPGVIDIEEVKGKKKAVVANPRKDTLSREVLRHEEFK 246 (291)
T ss_pred cCcccccceecCceeEEEEecceEEEcC-cCCHHHHHHHHhhCCCccEEecccCCCceEEEcccccCcccHhHhhhhccC
Confidence 356666776654432 2234556663 464 467899999999998752 223455778999999999866 34
Q ss_pred Cceeecc
Q psy9410 651 NCISMIE 657 (736)
Q Consensus 651 ~Ai~~~~ 657 (736)
++|.+..
T Consensus 247 ~~V~v~~ 253 (291)
T cd07032 247 DKVELGR 253 (291)
T ss_pred CceeEEE
Confidence 5676644
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.07 E-value=0.33 Score=59.94 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.8
Q ss_pred cccCcchhHhhCcccccccc
Q psy9410 607 KCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.|++||.|+.+||++++.+.
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~ 941 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYK 941 (1012)
T ss_pred cccccchHHHhCCCCcccce
Confidence 49999999999999988754
No 377
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=88.00 E-value=0.65 Score=56.64 Aligned_cols=49 Identities=20% Similarity=0.097 Sum_probs=40.4
Q ss_pred ecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 267 ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 267 klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|||||++|.+ ++.++.++ |.++++|.|++..+....+..++.+.+....
T Consensus 570 KMSKS~GN~i---------------~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~ 618 (805)
T PRK00390 570 KMSKSKGNVV---------------DPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGAY 618 (805)
T ss_pred EeCCCCCCCC---------------CHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHHH
Confidence 9999998755 78888876 9999999999988877778778877766653
No 378
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=87.85 E-value=0.22 Score=54.39 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=23.0
Q ss_pred eecccCccCccchhhcCccCceeecc
Q psy9410 632 TIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.++...|++||.|+.+||++||.+.+
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~ 33 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDK 33 (341)
T ss_pred EECcccCcChHHHHHhCCHhhheccc
Confidence 56778999999999999999998864
No 379
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=87.69 E-value=0.36 Score=57.21 Aligned_cols=19 Identities=37% Similarity=0.961 Sum_probs=16.4
Q ss_pred ccccccCcchhHhhCcccc
Q psy9410 604 KENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~a 622 (736)
+.+.|++||.|+.+||.++
T Consensus 435 ~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 435 LEEQCYACGRCEQACPKNI 453 (784)
T ss_pred CHhhhhhhhHHhccCCCCC
Confidence 3568999999999999873
No 380
>PLN02882 aminoacyl-tRNA ligase
Probab=87.68 E-value=0.58 Score=59.05 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=41.0
Q ss_pred CCceE-EEEeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcc-cCCccccHHHHH
Q psy9410 252 FPKQY-EFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS-KSDSWINIEILE 328 (736)
Q Consensus 252 ~p~~~-~f~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s-~~~~~~~~~~l~ 328 (736)
+|+++ ..|++.. +|+|||||++|.+ ...++.++ |.++|+|.|++..... ..+..|+.+.+.
T Consensus 597 pfk~VivhG~vlde~G~KMSKSlGNvI---------------dP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~~v~ 660 (1159)
T PLN02882 597 AFKNLICNGLVLAEDGKKMSKSLKNYP---------------DPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEEGVF 660 (1159)
T ss_pred CcceeEEccEEECCCCCCcccCCCCCC---------------CHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHHHHH
Confidence 34433 3444544 7999999998754 45566665 9999999999876554 234466665554
Q ss_pred H
Q psy9410 329 Q 329 (736)
Q Consensus 329 ~ 329 (736)
+
T Consensus 661 ~ 661 (1159)
T PLN02882 661 G 661 (1159)
T ss_pred H
Confidence 4
No 381
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.56 E-value=1.3 Score=53.18 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 264 THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 264 ~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+|.|||||+||.+ ..-++.++ |-.+|||.++...+..-.|..+++..++..-+
T Consensus 522 ~G~KMSKS~GNvI---------------DP~d~I~~-yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rn 574 (877)
T COG0525 522 QGRKMSKSKGNVI---------------DPLDVIDK-YGADALRFTLASLASPGRDINFDEKRVEGYRN 574 (877)
T ss_pred CCCCCcccCCCcC---------------CHHHHHHH-hChHHHHHHHHhccCCCcccCcCHHHHHHHHH
Confidence 6899999999755 34566665 89999998888777776788888887765433
No 382
>PLN02843 isoleucyl-tRNA synthetase
Probab=87.33 E-value=1.3 Score=55.15 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=37.4
Q ss_pred ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHc--------CCCHHHHHHHHHHcCcccCCccccHHHHH
Q psy9410 262 NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRR--------GYTPESIKLFCKRIGVSKSDSWINIEILE 328 (736)
Q Consensus 262 ~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~--------G~~peai~~~~~~~g~s~~~~~~~~~~l~ 328 (736)
..+|.|||||+||.+ +..++.+. -|.++++|.|++... ...+..++.+.|.
T Consensus 606 d~~G~KMSKSlGNvI---------------~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~-~~~d~~~s~~~l~ 664 (974)
T PLN02843 606 DEKGFKMSKSLGNVV---------------DPRLVIEGGKNQKQEPAYGADVLRLWVASVD-YTGDVLIGPQILK 664 (974)
T ss_pred CCCCCCcCCCCCCcC---------------CHHHHHhhccccccccccChHHHHHHHHhcc-cCCCceeCHHHHH
Confidence 347999999998755 66777763 389999998887644 4457677766554
No 383
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=87.25 E-value=0.33 Score=52.13 Aligned_cols=18 Identities=39% Similarity=1.150 Sum_probs=16.1
Q ss_pred ccccccCcchhHhhCccc
Q psy9410 604 KENKCIGCTLCIQSCPVD 621 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ 621 (736)
+...|+.||.|...||.+
T Consensus 349 ~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 349 KASDCIECGQCLEKCPQH 366 (391)
T ss_pred cccccchhhhhhhcCCCc
Confidence 567899999999999975
No 384
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=87.14 E-value=0.97 Score=53.32 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=32.0
Q ss_pred EEee-ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccc
Q psy9410 258 FSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWI 322 (736)
Q Consensus 258 f~~l-~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~ 322 (736)
.+.+ ..+|+|||||++|.+ +..++.++ |.++++|-|++..+-...+..+
T Consensus 551 hG~vld~~G~KMSKS~GNvi---------------~p~~ii~~-yGaD~lRl~~~~~~~~~~D~~~ 600 (601)
T PF00133_consen 551 HGFVLDEDGRKMSKSKGNVI---------------DPEDIIEK-YGADALRLWLASSADPGQDINF 600 (601)
T ss_dssp E--EEETTSSB-BTTTTB-----------------BHHHHHHH-T-HHHHHHHHHHHS-TTS-EEE
T ss_pred cccccccceeecccCCCccc---------------CHHHHHHH-hCcHHHHHHHHhcCCcccCccc
Confidence 3443 357999999999765 78888887 9999999998866655445433
No 385
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=87.00 E-value=0.39 Score=56.70 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=26.6
Q ss_pred cccCcchhHhhCcccccccccccc--eeec-ccCccCccchhhcCccC
Q psy9410 607 KCIGCTLCIQSCPVDAIIGAAKHM--HTIF-SKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~~~~~--~~~~-~~~C~~Cg~Cv~~CP~~ 651 (736)
.|..||.|+.+||+||+....... .... ...-+-|..|...|...
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k~~~~~~r~w~~~~~~t~C~~C~~gC~i~ 230 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSKPYAFKARPWELKSTPSICVHDSVGCNIR 230 (603)
T ss_pred CCcccCChHhhCCcccccccccccccccccceeccccCCCcCCCCcee
Confidence 467899999999999997532110 1111 11233455555567654
No 386
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=86.85 E-value=1.4 Score=46.94 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=52.0
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-----Ccc----cccHHHHHHHHHH--HHHcCCCCCCCCCcccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-----NPL----KENKEYVNSIIKT--IKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-----d~~----r~~~~~~~~i~~d--l~wLGi~~d~gp~~~~~ 93 (736)
=.|||.|||||+-+... ...-...|...+.=+.|. |+. +........+..+ +-.+|++++. ...+.
T Consensus 12 ~~PTg~lHlG~l~~~~~-~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k--~~i~~ 88 (292)
T PF00579_consen 12 IDPTGDLHLGHLVPIMK-LIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEK--TEIFR 88 (292)
T ss_dssp EESSSS-BHHHHHHHHH-HHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTT--EEEEE
T ss_pred ECCCCcccchHHHHHHH-HHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccc--eEEEe
Confidence 45789999998876644 333333777877777654 232 3344455555555 6678998854 24788
Q ss_pred ccccHHHHHHHHHHHHHcC
Q psy9410 94 ASDYFDILYKIAEYLIISG 112 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g 112 (736)
||+..... ++...|...+
T Consensus 89 ~s~~~~~~-~~~~~l~~~~ 106 (292)
T PF00579_consen 89 QSDWPEHM-ELWWFLSDVA 106 (292)
T ss_dssp GHHHHCHH-HHHHHHHHHH
T ss_pred CCCccccc-chhhhhcccc
Confidence 89886655 6655555433
No 387
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=86.74 E-value=0.55 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.704 Sum_probs=16.0
Q ss_pred cccccCcchhHhhCccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai 623 (736)
...|+.||.|+.+||.++-
T Consensus 193 ~~~C~~Cg~C~~~CP~~I~ 211 (220)
T TIGR00384 193 VWRCTTCMNCSEVCPKGVN 211 (220)
T ss_pred CccCccccccccccCCCCC
Confidence 3579999999999998643
No 388
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.57 E-value=0.99 Score=56.10 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=39.4
Q ss_pred Eeee-cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHH
Q psy9410 259 SRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 329 (736)
Q Consensus 259 ~~l~-~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~ 329 (736)
+++. .+|.|||||+||.+ +..++.++ |.++++|.|++.. -...+..|+.+.|..
T Consensus 621 G~vld~~G~KMSKSlGNvI---------------dP~~ii~~-yGaD~lRl~lls~-~~~~D~~fs~~~l~~ 675 (961)
T PRK13804 621 GFTLDEKGEKMSKSLGNTV---------------SPQDVIKQ-SGADILRLWVASV-DYSDDQRIGKEILKQ 675 (961)
T ss_pred ccEECCCCCCccCCCCCcC---------------CHHHHHHh-cCHHHHHHHHHhC-CCCCCcccCHHHHHH
Confidence 3344 48999999998754 55666665 9999999988864 445677788776544
No 389
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=86.43 E-value=0.53 Score=53.14 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.5
Q ss_pred eeccccccCcchhHhhCcccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~a 622 (736)
.++...|+.||.|..+||.+.
T Consensus 398 ~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 398 EHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred cCCCCcCCcCCCcccccCCCC
Confidence 345678999999999999864
No 390
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.98 E-value=0.34 Score=45.51 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=31.2
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCC
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTG 569 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~ 569 (736)
+|.++|+.||.-.|+.||-.+.+|......|-.-
T Consensus 134 LP~tNCg~CGEqtCmaFAiKLlnge~~ld~C~pL 167 (193)
T COG4871 134 LPQTNCGKCGEQTCMAFAIKLLNGEVKLDSCLPL 167 (193)
T ss_pred CCCCccccchhHHHHHHHHHHHcCccchhhcccc
Confidence 5889999999999999999999999999888654
No 391
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=85.84 E-value=1.7 Score=38.61 Aligned_cols=40 Identities=50% Similarity=0.817 Sum_probs=29.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKE 65 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~ 65 (736)
+.|+.++ |++|+||...+ ....+ .....++.+.|.++...
T Consensus 2 ~~~~G~F-dp~H~GH~~l~--~~a~~--~~d~~i~~i~~~~~~~~ 41 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLI--CRAKG--IADQCVVRIDDNPPVKV 41 (105)
T ss_pred EEeCCCC-CCCCHHHHHHH--HHHHH--hCCcEEEEEcCCCcccc
Confidence 4788999 99999999963 33322 23678899998876553
No 392
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=85.47 E-value=0.51 Score=38.08 Aligned_cols=58 Identities=12% Similarity=0.299 Sum_probs=34.5
Q ss_pred ccceeccccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..+.+|.+.|++=|.|+..=|. ++..........+...=..=-.-+..||+|||++.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~-VFd~~~~~~v~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPE-VFDQDDEPWVSPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCC-cccCCCCCcCCcCccCHHHHHHHHHcCCccCcEEee
Confidence 3577899999999999998773 332222211111110001112467899999998753
No 393
>KOG0433|consensus
Probab=85.37 E-value=2.4 Score=49.44 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=57.5
Q ss_pred CCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-----------------------cccc-------cHHHHHHHH
Q psy9410 27 PNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN-----------------------PLKE-------NKEYVNSII 74 (736)
Q Consensus 27 PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd-----------------------~~r~-------~~~~~~~i~ 74 (736)
.+|.||||||+.-++.++.-|. ..|+-++-.-.-| |... ..++++..+
T Consensus 66 anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~ 145 (937)
T KOG0433|consen 66 ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQM 145 (937)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887665442 3344444332222 1000 246777778
Q ss_pred HHHHHcCC--CCCCCCCcccc--ccccHHHHHHHHHHHHHcCCCcccC
Q psy9410 75 KTIKWLNF--NWDKVKKRIYY--ASDYFDILYKIAEYLIISGDAYVDS 118 (736)
Q Consensus 75 ~dl~wLGi--~~d~gp~~~~~--~Se~~~~~~~~a~~Li~~g~aY~c~ 118 (736)
+.++..|+ +|.. +|. +.+|.....+.-.+|.++|++|+.+
T Consensus 146 e~F~r~gv~aDW~n----~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 146 EAFRRWGVTADWEN----PYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred HHHHHheeeccCCC----ceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 88999998 4654 443 3555555556667999999999654
No 394
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=85.34 E-value=0.79 Score=57.89 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=39.5
Q ss_pred cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcc-cCCccccHHHHHHHHhcc
Q psy9410 263 LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS-KSDSWINIEILEQALRDD 334 (736)
Q Consensus 263 ~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s-~~~~~~~~~~l~~~~~~~ 334 (736)
-+|.|||||+||.. ...++.++ |-++|+|.|++..+.. ..+..|+.+.+.+..+..
T Consensus 716 ~dG~KMSKSlGNvI---------------DP~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~ 772 (1205)
T PTZ00427 716 SDGKKMSKRLKNYP---------------DPLYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSF 772 (1205)
T ss_pred CCCCCcccCCCCCC---------------CHHHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHH
Confidence 48999999998754 33455554 8899999999876543 456678877765544433
No 395
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=85.05 E-value=0.81 Score=56.02 Aligned_cols=50 Identities=20% Similarity=0.111 Sum_probs=40.5
Q ss_pred ecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 267 ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 267 klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|||||++|.+ ++.++.++ |.++++|.|++..+....+..++.+.++...+
T Consensus 604 KMSKS~GN~v---------------~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~ 653 (842)
T TIGR00396 604 KMSKSKGNGI---------------DPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEGARR 653 (842)
T ss_pred hhhhcCCCcC---------------CHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHHHHH
Confidence 9999998755 78888887 99999999999887777777787777765433
No 396
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.66 E-value=0.64 Score=49.19 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=15.3
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|..||.|+.+||.+.
T Consensus 206 ~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 206 WRCTYCYSCSNVCPRDI 222 (279)
T ss_pred CcccCcccchhhCCCCC
Confidence 58999999999999864
No 397
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=84.61 E-value=0.57 Score=55.62 Aligned_cols=19 Identities=47% Similarity=1.055 Sum_probs=16.6
Q ss_pred ccccccCcchhHhhCcccc
Q psy9410 604 KENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~a 622 (736)
+...|++||.|+.+||.+.
T Consensus 440 l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 440 LYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhccchhHHhhhCCCCC
Confidence 3568999999999999975
No 398
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=84.44 E-value=0.61 Score=55.27 Aligned_cols=18 Identities=39% Similarity=1.113 Sum_probs=16.5
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
...|++||.|+.+||.++
T Consensus 402 ~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 402 FDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhhhhhHHhhhCCCCC
Confidence 578999999999999986
No 399
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=84.35 E-value=0.66 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.1
Q ss_pred cceeccccccCcchhHhhCccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
.+.+|.+.|+.|+.|+.+||. |+..
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~-a~~~ 290 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK-ALHP 290 (402)
T ss_pred eEEEcchhcCcCccccccCcc-cccC
Confidence 588999999999999999997 6654
No 400
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.27 E-value=0.64 Score=47.85 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=15.6
Q ss_pred ccccCcchhHhhCccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai 623 (736)
..|..|+.|..+||.+.-
T Consensus 201 ~~C~~C~~C~~vCPkgI~ 218 (235)
T PRK12575 201 FRCRTIMNCVDVCPKGLN 218 (235)
T ss_pred ccccCcchhccccCCCCc
Confidence 489999999999998643
No 401
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=84.23 E-value=0.83 Score=51.37 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=15.9
Q ss_pred ccccCcchhHhhCccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai 623 (736)
..|..||.|..+||.+..
T Consensus 343 ~~C~~Cg~C~~vCP~gI~ 360 (432)
T TIGR00273 343 YLSSLCGACREVCPVKIP 360 (432)
T ss_pred ccchhhhhhhccCCCCCc
Confidence 679999999999998644
No 402
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=84.13 E-value=0.47 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.833 Sum_probs=20.6
Q ss_pred eccccccCcchhHhhCcccccccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+...|++||.|+.+||++||...
T Consensus 187 ~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 187 GTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred cccccccchHHHHHhCCCCcEEec
Confidence 345689999999999999999754
No 403
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=83.71 E-value=1 Score=42.63 Aligned_cols=19 Identities=37% Similarity=0.842 Sum_probs=16.1
Q ss_pred ccccCcchhHhhCcccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAII 624 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai~ 624 (736)
..|..||.|..+||.+...
T Consensus 46 ~~C~~Cg~C~~~CP~~i~~ 64 (144)
T TIGR03290 46 WMCTTCYTCQERCPRDVKI 64 (144)
T ss_pred CcCcCcCchhhhcCCCCCH
Confidence 3799999999999987543
No 404
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=83.42 E-value=0.44 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.782 Sum_probs=20.4
Q ss_pred cCccCccchhhcCccCceeeccc
Q psy9410 636 KLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 636 ~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..|..|+.|+++||++||+....
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~~ 227 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGGE 227 (314)
T ss_pred ccCcchhHHHhhCCccccCCCCC
Confidence 57999999999999999987654
No 405
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=83.41 E-value=2.9 Score=49.47 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=45.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC----cc---c--ccHHHHHHHHHHHHHcCCCCCCCCCcc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN----PL---K--ENKEYVNSIIKTIKWLNFNWDKVKKRI 91 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd----~~---r--~~~~~~~~i~~dl~wLGi~~d~gp~~~ 91 (736)
+-..=.|||.+||||.--..++.....+.|...++=|-|.- .. . ........+..++..+|++++. ...
T Consensus 35 v~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK--~~~ 112 (682)
T PTZ00348 35 CYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK--VLF 112 (682)
T ss_pred EEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccc--eEE
Confidence 44455688999999942223444444456666666666542 11 1 1122234566678889999974 137
Q ss_pred ccccccHH
Q psy9410 92 YYASDYFD 99 (736)
Q Consensus 92 ~~~Se~~~ 99 (736)
.+||+.+.
T Consensus 113 ~~qSd~i~ 120 (682)
T PTZ00348 113 LWSSEEIT 120 (682)
T ss_pred EECcHhhh
Confidence 78998443
No 406
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=83.38 E-value=3.1 Score=46.10 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=44.0
Q ss_pred EEECCCCCCcCchhHHH-H-HHHHHHHHHhcCCEEEEEeeCC----------CcccccHHHHHHHHHHHHHcCCCCCCCC
Q psy9410 21 TRFAPEPNGYLHIGHAK-S-IFINFELAYKYNGLCNLRFDDT----------NPLKENKEYVNSIIKTIKWLNFNWDKVK 88 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar-~-al~n~~~Ar~~~G~~ilR~eDt----------d~~r~~~~~~~~i~~dl~wLGi~~d~gp 88 (736)
+-..=.|||.+||||.- . ..++++ ...|.+.++=|-|. |++. .......+...+..+|++++.
T Consensus 69 v~~G~~PTG~lHLG~g~i~~~~~~~l--q~~G~~v~~~IaD~hA~~~~~~g~~l~~-i~~~~~~~~~~~~A~GlDp~k-- 143 (383)
T PTZ00126 69 CYDGFEPSGRMHIAQGILKAINVNKL--TKAGCVFVFWVADWFALLNNKMGGDLEK-IRKVGEYFIEVWKAAGMDMDN-- 143 (383)
T ss_pred EEEEECCCCcccccchHhHhHHHHHH--HhCCCeEEEEEccceeecCCCCCCCHHH-HHHHHHHHHHHHHHhCCCccc--
Confidence 44445688999999931 1 123333 33355655555543 2222 234445566677889999864
Q ss_pred CccccccccHHH
Q psy9410 89 KRIYYASDYFDI 100 (736)
Q Consensus 89 ~~~~~~Se~~~~ 100 (736)
....+||+.+..
T Consensus 144 ~~i~~qS~~v~~ 155 (383)
T PTZ00126 144 VRFLWASEEINK 155 (383)
T ss_pred eEEEECChhhhh
Confidence 237789987643
No 407
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=83.12 E-value=0.59 Score=52.64 Aligned_cols=18 Identities=44% Similarity=1.119 Sum_probs=15.9
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
.+.|++|++|..+||.+.
T Consensus 437 ~d~C~~C~rCEq~Cpk~i 454 (772)
T COG1152 437 HDVCIGCGRCEQVCPKNI 454 (772)
T ss_pred HHHhhhhhhhhhhCcccC
Confidence 578999999999999754
No 408
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=82.45 E-value=0.82 Score=55.73 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.4
Q ss_pred ccCcchhHhhCcccccccc
Q psy9410 608 CIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~ai~~~ 626 (736)
|.-||.|+.+||+||+...
T Consensus 186 ~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 186 SELSGNMIDLCPVGALTSK 204 (776)
T ss_pred CcccCCchhhCCccccccc
Confidence 5569999999999999743
No 409
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=82.23 E-value=0.55 Score=36.54 Aligned_cols=17 Identities=35% Similarity=0.935 Sum_probs=8.5
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.||.|+.+||.++
T Consensus 41 ~~C~~C~~C~~~CP~~I 57 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVGI 57 (57)
T ss_dssp GG-----HHHHH-TT--
T ss_pred cCCcCcCCccCcCcccc
Confidence 78999999999999863
No 410
>PLN02563 aminoacyl-tRNA ligase
Probab=82.20 E-value=1.2 Score=54.96 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=38.4
Q ss_pred CeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 265 HTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 265 g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
++|||||++|.. ...++.++ |-++++|.|++..+....+..++.+.++...|
T Consensus 721 ~eKMSKSKGNvV---------------dP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g~~r 772 (963)
T PLN02563 721 AHKMSKSRGNVV---------------NPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEGVHR 772 (963)
T ss_pred ccccccccCCcC---------------CHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHHHHH
Confidence 459999998644 56677776 99999999999888666665566666655444
No 411
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=82.02 E-value=0.68 Score=48.11 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=15.2
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.||.|+.+||.+.
T Consensus 212 ~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 212 GNCTNTGECEAVCPKGI 228 (250)
T ss_pred ccCcccCccccccCCCC
Confidence 47999999999999875
No 412
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=81.72 E-value=0.66 Score=37.44 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.7
Q ss_pred eecccCccCccchhhcCcc
Q psy9410 632 TIFSKLCTGCDLCIKKCPV 650 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~ 650 (736)
.++..+|++||.|+..||.
T Consensus 2 ~vD~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPE 20 (65)
T ss_pred EEecccCcCccHHHhhCCc
Confidence 3577899999999999996
No 413
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=81.59 E-value=0.46 Score=41.15 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.8
Q ss_pred cccceeccccccCcchhHhhCcc-ccccc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPV-DAIIG 625 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~-~ai~~ 625 (736)
.+.+.++.+.|.-||.|--+||. +.|..
T Consensus 57 ~g~l~~~yegClECGTCRvlc~~~~~i~W 85 (99)
T COG2440 57 DGKLRFDYEGCLECGTCRVLCPHSGLIQW 85 (99)
T ss_pred CCcEEEeecCeeeccceeEecCCCcceEE
Confidence 36689999999999999999998 66653
No 414
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=81.40 E-value=0.94 Score=46.62 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=15.2
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.||.|..+||.+.
T Consensus 198 ~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 198 FRCHTIMNCVEVCPKGL 214 (232)
T ss_pred ccCcCcCCcCccccCCC
Confidence 57999999999999864
No 415
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=81.03 E-value=0.57 Score=49.62 Aligned_cols=20 Identities=30% Similarity=0.964 Sum_probs=18.3
Q ss_pred ccCccCccchhhcCccCcee
Q psy9410 635 SKLCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 635 ~~~C~~Cg~Cv~~CP~~Ai~ 654 (736)
...|..|+.|+++||++||.
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCCccHHHHHHhcCccccc
Confidence 46899999999999999986
No 416
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=81.00 E-value=0.87 Score=55.58 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=16.8
Q ss_pred cccCcchhHhhCccccccc
Q psy9410 607 KCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~ 625 (736)
.|..||.|+.+||+||+..
T Consensus 191 ~~~~cG~cv~vCP~GAl~~ 209 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTG 209 (797)
T ss_pred CccccCCchhhCCcccccc
Confidence 4678999999999999974
No 417
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=80.93 E-value=1.1 Score=53.64 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.7
Q ss_pred ccCcchhHhhCcccccccc
Q psy9410 608 CIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 608 Ci~Cg~C~~~CP~~ai~~~ 626 (736)
|..||.|+.+||+||+...
T Consensus 187 ~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 187 SELSGNVIDLCPVGALTSK 205 (687)
T ss_pred ccccccHHhhCCCcccccc
Confidence 6789999999999999753
No 418
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=80.93 E-value=0.93 Score=49.20 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=15.3
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.|+.|..+||.++
T Consensus 209 w~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 209 WGCTRCYYCNSVCPMEV 225 (329)
T ss_pred ccCcChhhhhhhCCCCC
Confidence 47999999999999875
No 419
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=80.87 E-value=1 Score=44.29 Aligned_cols=19 Identities=26% Similarity=0.747 Sum_probs=16.3
Q ss_pred cccccCcchhHhhCccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai 623 (736)
--.|+.|..|..-||.+..
T Consensus 82 lW~C~tCytC~eRCPr~v~ 100 (195)
T COG1150 82 LWACVTCYTCTERCPRGVK 100 (195)
T ss_pred ceeeeechhhhhhCCCCCC
Confidence 3479999999999998754
No 420
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=80.41 E-value=1.1 Score=46.48 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=15.1
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.||.|..+||.+.
T Consensus 203 ~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 203 WSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhCcCcccccccCCCCC
Confidence 38999999999999864
No 421
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=79.20 E-value=1.1 Score=55.08 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.2
Q ss_pred cccCcchhHhhCcccccccc
Q psy9410 607 KCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.|..||.|+.+||+||+...
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred cChhhCChHhhCCchhcccc
Confidence 46789999999999999753
No 422
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=78.89 E-value=0.78 Score=51.14 Aligned_cols=18 Identities=28% Similarity=0.780 Sum_probs=16.2
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
-+.|+.|+.|..+||.++
T Consensus 53 ~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 53 LKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCcCcCcCccCcccCCCC
Confidence 478999999999999875
No 423
>KOG0437|consensus
Probab=78.83 E-value=0.62 Score=53.93 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=41.2
Q ss_pred EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHH
Q psy9410 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE 325 (736)
Q Consensus 257 ~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~ 325 (736)
..|||.++++||||+.|+++ ||.+-.+. |.+++.|--|+..|=+-.|.+|...
T Consensus 700 aNGHLmLNsEKMSKSTGNfm---------------TL~qaieK-Fgad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 700 ANGHLMLNSEKMSKSTGNFM---------------TLEQAIEK-FGADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred eCceEEecchhhccccCCee---------------eHHHHHHH-hCccceeeeeecccCCcccchhHHh
Confidence 57999999999999999876 89887766 7788888666667766666665433
No 424
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=78.78 E-value=1.8 Score=48.41 Aligned_cols=17 Identities=29% Similarity=1.077 Sum_probs=15.3
Q ss_pred ccccCcchhHhhCcccc
Q psy9410 606 NKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~a 622 (736)
..|+.|+.|..+||.+.
T Consensus 73 ~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 73 DRCLTCRNCETTCPSGV 89 (407)
T ss_pred ccCccccchhhhCCCCC
Confidence 58999999999999864
No 425
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=78.69 E-value=0.84 Score=36.02 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=13.9
Q ss_pred cccCccCccchhhcCccCceeecc
Q psy9410 634 FSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 634 ~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
+...|++||.|+..||.- ..+.+
T Consensus 2 D~~~Ci~Cg~C~~~aP~v-F~~~d 24 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPDV-FDYDD 24 (58)
T ss_dssp -TTT--S-SHHHHH-TTT-EEEET
T ss_pred ChhhCcCCChHHHhCcHh-eeEcC
Confidence 557899999999999975 44444
No 426
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=78.52 E-value=0.92 Score=36.96 Aligned_cols=20 Identities=25% Similarity=0.668 Sum_probs=17.3
Q ss_pred eecccCccCccchhhcCccC
Q psy9410 632 TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.++...|++||.|..+||.-
T Consensus 4 ~vDrd~Cigcg~C~~~aPdv 23 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPDV 23 (68)
T ss_pred EechhhccccchhhhcCCcc
Confidence 46678999999999999974
No 427
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=78.31 E-value=0.64 Score=52.22 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=34.6
Q ss_pred cCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhhCc
Q psy9410 540 QCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCP 619 (736)
Q Consensus 540 ~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP 619 (736)
.|.+|+. |. .+||.+-.-..+.+....+ +........--.||.||.|..+||
T Consensus 366 sCi~C~~--C~-------------d~CP~~Llp~ql~~~a~~~-------------~~~e~~~~~l~dCIECg~Ca~vCP 417 (529)
T COG4656 366 SCIRCSL--CA-------------DACPVNLLPQQLYWFAKGE-------------QHDEEEEHNLLDCIECGACAYVCP 417 (529)
T ss_pred ccccHHH--HH-------------HhCccccCHHHhhHHhhhh-------------hhhHHHHHHhhhhhhhCcchhcCC
Confidence 7888884 55 8899885433222222221 111223335567999999999999
Q ss_pred cccc
Q psy9410 620 VDAI 623 (736)
Q Consensus 620 ~~ai 623 (736)
.+..
T Consensus 418 s~ip 421 (529)
T COG4656 418 SNIP 421 (529)
T ss_pred CCCC
Confidence 8644
No 428
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=78.05 E-value=1.4 Score=45.78 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.9
Q ss_pred cccccCcchhHhhCccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai 623 (736)
-..|..|+.|..+||.++-
T Consensus 199 l~~C~~C~~C~~vCPkgI~ 217 (251)
T PRK12386 199 LGYCNITKCCTEVCPEHIK 217 (251)
T ss_pred cccCcCCCCcCCcCCCCcC
Confidence 3469999999999998654
No 429
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=77.83 E-value=0.99 Score=35.66 Aligned_cols=20 Identities=40% Similarity=0.953 Sum_probs=11.0
Q ss_pred eccccccCcchhHhhCcccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~a 622 (736)
.....|++||.|..+||.+.
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 35678999999999999863
No 430
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=76.21 E-value=1.6 Score=46.00 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.9
Q ss_pred ccccCcchhHhhCccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai 623 (736)
..|..|+.|..+||.++-
T Consensus 244 ~~C~~C~~C~~vCPkgI~ 261 (276)
T PLN00129 244 YRCHTIRNCSNACPKGLN 261 (276)
T ss_pred CcCcChhhccccCCCCCC
Confidence 689999999999998753
No 431
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=75.39 E-value=1 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.679 Sum_probs=20.7
Q ss_pred cCccCccchhhcCccCceeecccC
Q psy9410 636 KLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 636 ~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.|-.|..|+++||++||.-....
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~ 208 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTV 208 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCcc
Confidence 789999999999999999765543
No 432
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=75.31 E-value=1.3 Score=55.53 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.4
Q ss_pred cceeccccccCcchhHh-hCcc
Q psy9410 600 CAIIKENKCIGCTLCIQ-SCPV 620 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~-~CP~ 620 (736)
...||++.|++|+.|++ .||.
T Consensus 656 K~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 656 KRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred cEEECHHHCCCccccccCCCCC
Confidence 47899999999999999 9996
No 433
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=74.99 E-value=0.87 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.688 Sum_probs=17.0
Q ss_pred ccccccCcchhHhhCccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai 623 (736)
....|..||.|..+||....
T Consensus 356 ~~~~c~lcg~C~evCPv~Ip 375 (459)
T COG1139 356 LPYACSLCGACTEVCPVKIP 375 (459)
T ss_pred cchhhccccCCCCcCCCCCC
Confidence 46789999999999998643
No 434
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=74.87 E-value=7.7 Score=43.42 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=45.2
Q ss_pred EEECCCCCC-cCchhHHHHHHHHHHHHHhcCCEEEEEeeC----C-Ccc-c----------ccHHHHHHHHHHHHHcCCC
Q psy9410 21 TRFAPEPNG-YLHIGHAKSIFINFELAYKYNGLCNLRFDD----T-NPL-K----------ENKEYVNSIIKTIKWLNFN 83 (736)
Q Consensus 21 ~RfaP~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilR~eD----t-d~~-r----------~~~~~~~~i~~dl~wLGi~ 83 (736)
+-..=.||| .|||||+-+ +.++..-+..|.+.++=+-| | ||. + ....+.+.|.+-+ ..|++
T Consensus 36 vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~ql-~~~ld 113 (408)
T PRK05912 36 IYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKEQL-FKFLD 113 (408)
T ss_pred EEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHHHH-HHhcC
Confidence 444556789 499999884 55555555566666665555 2 343 1 1233444444433 67887
Q ss_pred CCCCCCccccccccHHH
Q psy9410 84 WDKVKKRIYYASDYFDI 100 (736)
Q Consensus 84 ~d~gp~~~~~~Se~~~~ 100 (736)
++.+...++++|+.++.
T Consensus 114 ~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 114 FEKDGAEIVNNSDWLGK 130 (408)
T ss_pred cCcCcEEEEECCCcCCc
Confidence 75311137788887654
No 435
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=74.10 E-value=1.4 Score=54.93 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.4
Q ss_pred cceeccccccCcchhHh-hCcc
Q psy9410 600 CAIIKENKCIGCTLCIQ-SCPV 620 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~-~CP~ 620 (736)
...||++.|++|+.|++ .||.
T Consensus 670 K~~Idqs~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 670 KRRIDQSSCNKDFSCLKGFCPS 691 (1165)
T ss_pred cEEECHhHCCCccccccCCCCC
Confidence 47899999999999999 9996
No 436
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=73.58 E-value=1.5 Score=47.41 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=17.1
Q ss_pred eeccccccCcchhHhhCccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVD 621 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ 621 (736)
.+....|+|||+|+.+||.+
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEY 316 (334)
T ss_pred ccCccccCCcCchhhhCCCC
Confidence 34567899999999999986
No 437
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=73.54 E-value=3.3 Score=51.97 Aligned_cols=29 Identities=3% Similarity=-0.007 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHcCcccCCccccHHHHHH
Q psy9410 301 YTPESIKLFCKRIGVSKSDSWINIEILEQ 329 (736)
Q Consensus 301 ~~peai~~~~~~~g~s~~~~~~~~~~l~~ 329 (736)
|.++|+|.|++..+....+..++...+..
T Consensus 640 yGaDalR~~l~~~~~~~~Di~~~~~~v~~ 668 (995)
T PTZ00419 640 CGTDALRFGLLAYTQQGRNINLDINRVVG 668 (995)
T ss_pred cCcHHHHHHHHhcCCCCCCccccHHHHHH
Confidence 78999999999877665666677665553
No 438
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=73.00 E-value=1.6 Score=54.52 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.4
Q ss_pred cceeccccccCcchhHh-hCcc
Q psy9410 600 CAIIKENKCIGCTLCIQ-SCPV 620 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~-~CP~ 620 (736)
...||++.|.+|+.|++ .||.
T Consensus 684 K~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 684 KRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEECHhHCCCccccccCCCCC
Confidence 47899999999999999 9997
No 439
>PLN02381 valyl-tRNA synthetase
Probab=71.85 E-value=4 Score=51.33 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHcCcccCCccccHHHHH
Q psy9410 301 YTPESIKLFCKRIGVSKSDSWINIEILE 328 (736)
Q Consensus 301 ~~peai~~~~~~~g~s~~~~~~~~~~l~ 328 (736)
|-++|+|.|++..+....+..+++..+.
T Consensus 710 yGADalR~~l~~~~~~~~di~~~~~~v~ 737 (1066)
T PLN02381 710 CGTDALRFALVSYTAQSDKINLDILRVV 737 (1066)
T ss_pred cChHHHHHHHHcCCccccccCccHHHHH
Confidence 7899999989887766666666666544
No 440
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=71.38 E-value=2 Score=47.99 Aligned_cols=19 Identities=32% Similarity=0.803 Sum_probs=16.7
Q ss_pred cccccCcchhHhhCccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai 623 (736)
.+.|..|+.|..+||.++.
T Consensus 51 ~~~C~~C~~C~~~CP~~i~ 69 (397)
T TIGR03379 51 LKYCTNCKRCEVACPSDVK 69 (397)
T ss_pred cccCcCcCccchhcCCCCC
Confidence 5689999999999999753
No 441
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=69.19 E-value=3.2 Score=47.71 Aligned_cols=18 Identities=28% Similarity=0.912 Sum_probs=15.6
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
-..|+.||.|..+||.++
T Consensus 184 ~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 184 LYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred CcCCCCcCcccCcCCCCC
Confidence 357999999999999864
No 442
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=67.89 E-value=2 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=16.2
Q ss_pred ccccccCcchhHhhCcccc
Q psy9410 604 KENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~a 622 (736)
....|++||+|..+||.+.
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 4468999999999999863
No 443
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=65.73 E-value=3.3 Score=45.42 Aligned_cols=17 Identities=29% Similarity=0.888 Sum_probs=15.2
Q ss_pred ccccccCcchhHhhCcc
Q psy9410 604 KENKCIGCTLCIQSCPV 620 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~ 620 (736)
-.+.|..||.|...||+
T Consensus 65 ~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 65 LANLCHNCGACLHACQY 81 (389)
T ss_pred HHHhCcCcccccccCcC
Confidence 35689999999999998
No 444
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=65.24 E-value=3 Score=44.92 Aligned_cols=25 Identities=36% Similarity=0.800 Sum_probs=20.8
Q ss_pred cccCccCccchhhcCccCceeecccC
Q psy9410 634 FSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 634 ~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+...|++||.|+.+||. +|++....
T Consensus 3 ~~~~c~~Cg~C~a~cp~-~i~~~~~~ 27 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY-AITERDEA 27 (332)
T ss_pred cCcccccchhhHhhCCc-eEEEeccc
Confidence 45689999999999999 88876543
No 445
>COG2000 Predicted Fe-S protein [General function prediction only]
Probab=64.79 E-value=4.8 Score=39.09 Aligned_cols=35 Identities=40% Similarity=0.896 Sum_probs=31.3
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCC
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTG 569 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~ 569 (736)
-++.++|+.||+.-|..+|+++..+......||.-
T Consensus 14 llpg~~cg~cgy~Rcde~aeallkk~v~i~dcp~~ 48 (226)
T COG2000 14 LLPGFNCGACGYSRCDEFAEALLKKLVKIDDCPFL 48 (226)
T ss_pred hcCCccccccCcchhhHHHHHHHhcccccccChHH
Confidence 35778999999999999999999998888889865
No 446
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=64.34 E-value=4.4 Score=35.88 Aligned_cols=47 Identities=43% Similarity=0.733 Sum_probs=35.3
Q ss_pred eeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEeeecCCeecchhh
Q psy9410 221 HSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRK 272 (736)
Q Consensus 221 hvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l~~~g~klSKr~ 272 (736)
+++||.++..+...+.|......+ ...|.++.|...+++++.||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l-----~~~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITL-----PVDPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCC-----CCCCeEEEccccccCceeeccCC
Confidence 889999999888888874433333 13477778888888899999984
No 447
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=61.90 E-value=0.73 Score=49.66 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCC
Q psy9410 283 DGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSD 319 (736)
Q Consensus 283 ~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~ 319 (736)
.+|++|+.+++..|+++|++|+++++++...+.++..
T Consensus 259 r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f 295 (314)
T PF00749_consen 259 REWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQF 295 (314)
T ss_dssp HHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC
T ss_pred ccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHh
Confidence 4799999999999999999999999999998887554
No 448
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=61.54 E-value=5.8 Score=43.87 Aligned_cols=19 Identities=26% Similarity=0.858 Sum_probs=16.6
Q ss_pred cccccCcchhHhhCccccc
Q psy9410 605 ENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai 623 (736)
...|..|++|+.+||.+.-
T Consensus 57 ~~~C~~C~~C~~~CP~~i~ 75 (388)
T COG0247 57 LDTCLACGACATACPSGID 75 (388)
T ss_pred HHhCcCccchHhhCCCCCc
Confidence 4789999999999998754
No 449
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=61.40 E-value=1.8 Score=44.28 Aligned_cols=18 Identities=28% Similarity=0.778 Sum_probs=15.4
Q ss_pred ccccCcchhHhhCccccc
Q psy9410 606 NKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~~ai 623 (736)
-.|..|+.|+.+||.+.-
T Consensus 198 ~~C~~~~~C~~vCPK~i~ 215 (234)
T COG0479 198 WRCTTCGNCTEVCPKGIP 215 (234)
T ss_pred ecccccccccccCCCCCC
Confidence 479999999999998643
No 450
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.93 E-value=3.5 Score=50.33 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=35.8
Q ss_pred eecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHH
Q psy9410 261 LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEIL 327 (736)
Q Consensus 261 l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l 327 (736)
|--+|.|||||.+|.. ...++.++ |-+++||-|++..- +..+..|++..+
T Consensus 596 lDe~GrKMSKSlGN~v---------------~P~~V~~~-yGADiLRLwv~ssd-~~~dl~~s~~il 645 (933)
T COG0060 596 LDEKGRKMSKSLGNVV---------------DPQDVIDK-YGADILRLWVASSD-YWEDLRFSDEIL 645 (933)
T ss_pred ECCCCCCccccCCCcC---------------CHHHHHHh-hCchheeeeeeecC-chhccccCHHHH
Confidence 3346889999998754 55666666 88999998888777 445555665553
No 451
>KOG0437|consensus
Probab=58.62 E-value=14 Score=43.47 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=39.6
Q ss_pred EEEC-CCCCCcCchhHHHHHH---HHHHHHHhcCCEEEE--EeeCCCcccccHHHHHHHHHHHHHcCCCCCC
Q psy9410 21 TRFA-PEPNGYLHIGHAKSIF---INFELAYKYNGLCNL--RFDDTNPLKENKEYVNSIIKTIKWLNFNWDK 86 (736)
Q Consensus 21 ~Rfa-P~PtG~lHiGhar~al---~n~~~Ar~~~G~~il--R~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~ 86 (736)
+-|| |.-||.|||||+.+.- |.-.|-|-.|-..++ -|--|. .-+....+.+.+.++.+|..+|-
T Consensus 48 ~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppdf 117 (1080)
T KOG0437|consen 48 VTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPDF 117 (1080)
T ss_pred EeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCCC
Confidence 6676 8889999999999863 333344433333222 334443 22334456777778889988873
No 452
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=58.28 E-value=3.7 Score=44.78 Aligned_cols=18 Identities=22% Similarity=0.732 Sum_probs=16.2
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
.+.|-.|+.|..+||+.+
T Consensus 47 a~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHHCcCcccccccCcCCC
Confidence 578999999999999955
No 453
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=56.28 E-value=4.5 Score=42.10 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=16.2
Q ss_pred cccCccCccchhhcCccCc
Q psy9410 634 FSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 634 ~~~~C~~Cg~Cv~~CP~~A 652 (736)
....|+.||.|+.+||+..
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 3467999999999999874
No 454
>COG4720 Predicted membrane protein [Function unknown]
Probab=55.68 E-value=11 Score=36.61 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=24.2
Q ss_pred cEEEEC-CCCCCcCchhHHHHHHHHHHHHH
Q psy9410 19 VITRFA-PEPNGYLHIGHAKSIFINFELAY 47 (736)
Q Consensus 19 ~v~Rfa-P~PtG~lHiGhar~al~n~~~Ar 47 (736)
+++|+| |.|+|++|+|.+--++...+|--
T Consensus 24 ~~i~IPtp~~~~~i~L~da~i~las~lfGs 53 (177)
T COG4720 24 RLIRIPTPIPNGFLTLGDAGIALASFLFGS 53 (177)
T ss_pred heeEecCCCCCCeeeHHHHHHHHHHHHHcc
Confidence 457776 77789999999999998888765
No 455
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=53.11 E-value=7.6 Score=46.40 Aligned_cols=19 Identities=16% Similarity=0.614 Sum_probs=16.5
Q ss_pred eeecccCccCccchhhcCc
Q psy9410 631 HTIFSKLCTGCDLCIKKCP 649 (736)
Q Consensus 631 ~~~~~~~C~~Cg~Cv~~CP 649 (736)
...|.++|+.||.|+.+|-
T Consensus 611 i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLE 629 (652)
T ss_pred eEeccccccCchHHHHHHH
Confidence 3457889999999999997
No 456
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=52.49 E-value=5.8 Score=47.04 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=16.0
Q ss_pred cCcchhHhhCcccccccc
Q psy9410 609 IGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 609 i~Cg~C~~~CP~~ai~~~ 626 (736)
..||.|+.+||+||+...
T Consensus 187 e~cGncv~vCPvGALt~K 204 (693)
T COG1034 187 ELCGNCVDVCPVGALTSK 204 (693)
T ss_pred ccccceeeeccccccccC
Confidence 689999999999999754
No 457
>KOG1247|consensus
Probab=52.38 E-value=7.6 Score=42.46 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=62.1
Q ss_pred EEECCCCCCcCchhHHHHHH-HHHHHHHhcC--CEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIF-INFELAYKYN--GLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLN 81 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al-~n~~~Ar~~~--G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLG 81 (736)
|-=-|..+...|+||.-..+ ..+.+||.+. |---+++=+|| |+..-..|......-.+|++
T Consensus 19 tsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~Wf~ 98 (567)
T KOG1247|consen 19 TSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDWFK 98 (567)
T ss_pred ecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHhhc
Confidence 55559999999999988654 4788998755 44556776665 33333455566666789999
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHcCC
Q psy9410 82 FNWDKVKKRIYYASDYFDILYKIAEYLIISGD 113 (736)
Q Consensus 82 i~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~ 113 (736)
|++|+ |+-+.+-...++-++.-.+|.++|+
T Consensus 99 IdfD~--fgrtTT~~qT~i~Q~iF~kl~~ng~ 128 (567)
T KOG1247|consen 99 IDFDE--FGRTTTKTQTEICQDIFSKLYDNGY 128 (567)
T ss_pred ccccc--cCcccCcchhHHHHHHhhchhhcCC
Confidence 99998 3444344444556666678877764
No 458
>KOG1247|consensus
Probab=52.04 E-value=9.6 Score=41.71 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred eecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 261 LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 261 l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|+.+..|.||+++- |+. . .....-|+.++.-|.||+.+-...+|+.|+|+.|...++
T Consensus 337 LnyE~gKFSKSrgv-----GvF---------G-~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~n 393 (567)
T KOG1247|consen 337 LNYEDGKFSKSRGV-----GVF---------G-NDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVN 393 (567)
T ss_pred hccccCcccccccc-----ccc---------c-cccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhh
Confidence 56677899999964 222 0 134567899999999999998888899999999877655
No 459
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=50.45 E-value=6.1 Score=40.81 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=15.8
Q ss_pred cccCccCccchhhcCccCc
Q psy9410 634 FSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 634 ~~~~C~~Cg~Cv~~CP~~A 652 (736)
....|+.||.|..+||+-.
T Consensus 147 ~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred chhhccccchhHhhCCCCc
Confidence 3457999999999999754
No 460
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=47.21 E-value=7.8 Score=39.42 Aligned_cols=21 Identities=33% Similarity=0.874 Sum_probs=19.5
Q ss_pred CccCccchhhcCccCceeecc
Q psy9410 637 LCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 637 ~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.|.||+.|...||+.||....
T Consensus 191 ~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 191 PCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred cccCchhhhccCCccCCcccC
Confidence 799999999999999998874
No 461
>KOG2713|consensus
Probab=44.33 E-value=61 Score=34.03 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-hc--CCEEEEEeeCCCccc---ccHHHHHHHHHHHHH---cCCCCCCCCCccccc
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAY-KY--NGLCNLRFDDTNPLK---ENKEYVNSIIKTIKW---LNFNWDKVKKRIYYA 94 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar-~~--~G~~ilR~eDtd~~r---~~~~~~~~i~~dl~w---LGi~~d~gp~~~~~~ 94 (736)
.--|||-+||||--.|+=+|.--. .| +-..++-+-|.-.-. ....+-+++++.... -||++... ...+|
T Consensus 19 GIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks--~lF~Q 96 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKS--SLFVQ 96 (347)
T ss_pred ccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccc--eeeee
Confidence 467999999999999998876432 22 224556666653111 112555666665554 49998761 24456
Q ss_pred cccHHHHHH
Q psy9410 95 SDYFDILYK 103 (736)
Q Consensus 95 Se~~~~~~~ 103 (736)
|+- +.+-+
T Consensus 97 S~V-pqh~e 104 (347)
T KOG2713|consen 97 SDV-PQHAE 104 (347)
T ss_pred ccc-hHHHH
Confidence 654 33444
No 462
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=43.51 E-value=8.6 Score=40.54 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=20.4
Q ss_pred ecccCccCccchhhcCcc----Cceeeccc
Q psy9410 633 IFSKLCTGCDLCIKKCPV----NCISMIEV 658 (736)
Q Consensus 633 ~~~~~C~~Cg~Cv~~CP~----~Ai~~~~~ 658 (736)
++..+|+.||.||.+|-. +||.+..+
T Consensus 209 ~D~nKCIlCgRCVRaC~EVqg~~aL~~~~R 238 (297)
T PTZ00305 209 VVLNRCIHCTRCVRFLNEHAQDFNLGMIGR 238 (297)
T ss_pred ecCCcCcCccHHHHHHHHhhCCcEEEEeec
Confidence 457899999999999973 57776544
No 463
>KOG1195|consensus
Probab=42.01 E-value=73 Score=36.15 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=24.3
Q ss_pred cE-EEEC-CCCCCcCchhHHHHHHHHHHHHH
Q psy9410 19 VI-TRFA-PEPNGYLHIGHAKSIFINFELAY 47 (736)
Q Consensus 19 ~v-~Rfa-P~PtG~lHiGhar~al~n~~~Ar 47 (736)
+| +=|. |+-.=++|+||+|+-+++-.+|+
T Consensus 111 ~iVVefSSPNIAK~FHvGhLRsTiiG~flan 141 (567)
T KOG1195|consen 111 KIVVEFSSPNIAKPFHVGHLRSTIIGNFLAN 141 (567)
T ss_pred eEEEEecCCCcccccccchhhhhhhhhHhhh
Confidence 45 7776 88889999999999999888774
No 464
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=39.88 E-value=15 Score=41.58 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.6
Q ss_pred eccccccC--cchhHhhCcccc
Q psy9410 603 IKENKCIG--CTLCIQSCPVDA 622 (736)
Q Consensus 603 ~d~~~Ci~--Cg~C~~~CP~~a 622 (736)
.+-..|+. ||.|.-+||...
T Consensus 410 ~~~~~C~EedCG~CsyVCPski 431 (448)
T PRK05352 410 LGALELDEEDLALCTFVCPGKY 431 (448)
T ss_pred cCchhcCccccCCCccCCCCCc
Confidence 45567999 999999999753
No 465
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=39.81 E-value=46 Score=26.59 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.3
Q ss_pred cHHHHHHcCCCHHHHHHHHHHc
Q psy9410 292 TLIGMRRRGYTPESIKLFCKRI 313 (736)
Q Consensus 292 tl~~l~~~G~~peai~~~~~~~ 313 (736)
.+..|++.|+++++|+..+.++
T Consensus 49 ~i~~lr~~g~~~~~i~~~l~l~ 70 (70)
T smart00422 49 FIKRLKELGFSLEEIKELLELL 70 (70)
T ss_pred HHHHHHHcCCCHHHHHHHHhcC
Confidence 6788999999999999877653
No 466
>KOG2145|consensus
Probab=37.95 E-value=22 Score=37.17 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccc-------cHHHHHHHHHHHHHcCCCCCC
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKE-------NKEYVNSIIKTIKWLNFNWDK 86 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~-------~~~~~~~i~~dl~wLGi~~d~ 86 (736)
.|| ++.|||||+-.+++--++....+..+|..++|-..--. ...|...-.+|+-.+|+++..
T Consensus 93 GpS-S~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 93 GPS-SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CCC-ccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 343 58999999999999999999999999999887642111 233444445566677888765
No 467
>KOG0432|consensus
Probab=35.92 E-value=59 Score=39.30 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHcCcccCCccccHHH
Q psy9410 302 TPESIKLFCKRIGVSKSDSWINIEI 326 (736)
Q Consensus 302 ~peai~~~~~~~g~s~~~~~~~~~~ 326 (736)
-.+|+|.-|...+.-..+..+|+..
T Consensus 649 GtDALRFaL~s~~~~~~dInLDv~r 673 (995)
T KOG0432|consen 649 GTDALRFALCSYTTQGRDINLDVLR 673 (995)
T ss_pred chHHHHHHHHHccccCccccccHHH
Confidence 5789996666777776776666543
No 468
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=35.60 E-value=17 Score=41.14 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.6
Q ss_pred ccccccC--cchhHhhCccc
Q psy9410 604 KENKCIG--CTLCIQSCPVD 621 (736)
Q Consensus 604 d~~~Ci~--Cg~C~~~CP~~ 621 (736)
.-..|+- ||.|.-+||..
T Consensus 410 g~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 410 GALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred CCcccCccccccCceECCCC
Confidence 3456887 99999999975
No 469
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=34.94 E-value=52 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q psy9410 293 LIGMRRRGYTPESIKLFCKR 312 (736)
Q Consensus 293 l~~l~~~G~~peai~~~~~~ 312 (736)
+...++.|++.+.+|+|+..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 56788999999999999875
No 470
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=34.08 E-value=13 Score=40.56 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=33.6
Q ss_pred ccccCcchhHhhCcc--ccccccc-ccceeecccCccCccchhhcCccCceeeccc
Q psy9410 606 NKCIGCTLCIQSCPV--DAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 606 ~~Ci~Cg~C~~~CP~--~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+|+.|+.| ++|-. +.+.+.. .....+-..+|..|.-|+..||..++.+...
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~ 56 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEISSMLEKISISLSDCLACSGCITSCEVKAISLQSG 56 (411)
T ss_pred CccccCccc-cccccccceEEEeecccccccchhhhhhhhccccCChHHhhhhcch
Confidence 479999999 99965 2222211 1111233467888888998888888776554
No 471
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=33.79 E-value=49 Score=36.71 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=22.6
Q ss_pred EEECCCCCC-cCchhHHHHHHHHHHHHHhcCCEEEEEeeCC
Q psy9410 21 TRFAPEPNG-YLHIGHAKSIFINFELAYKYNGLCNLRFDDT 60 (736)
Q Consensus 21 ~RfaP~PtG-~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt 60 (736)
+-..=.||| .|||||+-++..-..+.+ .|.+.++=+.|-
T Consensus 33 vy~G~dPTg~~lHlGh~v~l~~l~~lq~-~G~~~~iligd~ 72 (377)
T TIGR00234 33 LYVGFDPTAPSLHLGHLVPLLKLRDFQQ-AGHEVIVLLGDA 72 (377)
T ss_pred EEEeeCCCCCCccHHHHHHHHHHHHHHH-CCCcEEEEEecc
Confidence 444556889 999999887543233333 444444435443
No 472
>KOG0434|consensus
Probab=29.50 E-value=1.2e+02 Score=35.77 Aligned_cols=89 Identities=25% Similarity=0.274 Sum_probs=53.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEE-Eee-CC---------C--------------------cc--cccHH
Q psy9410 24 APEPNGYLHIGHAKSIFINFELAYK--YNGLCNL-RFD-DT---------N--------------------PL--KENKE 68 (736)
Q Consensus 24 aP~PtG~lHiGhar~al~n~~~Ar~--~~G~~il-R~e-Dt---------d--------------------~~--r~~~~ 68 (736)
||-.||-.|-||.-+..+-+...|. ..|-.+- ||- || | -+ ..+-.
T Consensus 46 PPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmr 125 (1070)
T KOG0434|consen 46 PPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMR 125 (1070)
T ss_pred CccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHH
Confidence 6899999999999999999887763 3344443 331 11 0 00 00124
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCccccccccHHHHHH---HHHHHHHcCCCccc
Q psy9410 69 YVNSIIKTIKWLN--FNWDKVKKRIYYASDYFDILYK---IAEYLIISGDAYVD 117 (736)
Q Consensus 69 ~~~~i~~dl~wLG--i~~d~gp~~~~~~Se~~~~~~~---~a~~Li~~g~aY~c 117 (736)
|.......+..|| |+++. -|-+=+..-|.. .-++|-++|++|.-
T Consensus 126 YssEWe~tv~RlGRWidF~n-----dYkTmyp~FMESvWwvFkeL~~kglVYRG 174 (1070)
T KOG0434|consen 126 YSSEWEKTVERLGRWIDFDN-----DYKTLYPSFMESVWWVFKELHEKGLVYRG 174 (1070)
T ss_pred HHHHHHHHHHhhccceeccC-----CcceecHHHHHHHHHHHHHHHhcCceecc
Confidence 4444455555666 34443 244545544444 34899999999953
No 473
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=27.97 E-value=21 Score=39.64 Aligned_cols=18 Identities=44% Similarity=1.139 Sum_probs=15.1
Q ss_pred cccCcchhHhhCcccccc
Q psy9410 607 KCIGCTLCIQSCPVDAII 624 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~ 624 (736)
.||+|+.|+++|+.....
T Consensus 246 ~CI~C~~CidaCd~~~~~ 263 (386)
T COG0348 246 ECIGCGRCIDACDDDMLK 263 (386)
T ss_pred ccccHhhHhhhCCHHhhe
Confidence 599999999999975443
No 474
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=19 Score=29.13 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=32.1
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeecccC--ccCccchhhcCccCceeec
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKL--CTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~--C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.+.++...|..-|.|++-=|. .+.. +..+-+.++. =..=-.-+..||+|||++.
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~-vF~~--~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPK-VFNL--GRKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHh-hccc--CCCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 467788899999999987663 1111 1112222211 1111246789999999864
No 475
>KOG4426|consensus
Probab=26.01 E-value=51 Score=36.50 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred cE-EEEC-CCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC
Q psy9410 19 VI-TRFA-PEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN 61 (736)
Q Consensus 19 ~v-~Rfa-P~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd 61 (736)
+| +-|. |+----||+||+|+-++++.++|- +-|-=+||..-+.
T Consensus 189 rvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvG 235 (656)
T KOG4426|consen 189 RVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVG 235 (656)
T ss_pred eEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecccc
Confidence 34 6675 666689999999999999999994 4466667665443
No 476
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=25.81 E-value=14 Score=42.14 Aligned_cols=21 Identities=33% Similarity=1.016 Sum_probs=16.6
Q ss_pred eccccccCcch--hHhhCccccc
Q psy9410 603 IKENKCIGCTL--CIQSCPVDAI 623 (736)
Q Consensus 603 ~d~~~Ci~Cg~--C~~~CP~~ai 623 (736)
...+.|..|+. |+.+||.++.
T Consensus 41 ~~a~rc~~c~~~~C~~~CP~~~~ 63 (471)
T PRK12810 41 IQAARCMDCGIPFCHWGCPVHNY 63 (471)
T ss_pred HHHHhccCCCCCcccccCCCCCc
Confidence 34678999965 9999998754
No 477
>KOG1799|consensus
Probab=25.28 E-value=26 Score=37.61 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=35.2
Q ss_pred cccceeccccccCcchhHhhCcc---cccccccccceeecccCcc-CccchhhcCcc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCT-GCDLCIKKCPV 650 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~---~ai~~~~~~~~~~~~~~C~-~Cg~Cv~~CP~ 650 (736)
...+.|+..-|+-|+.|-..|-. +|+..+......--...|. +||.|.-.||.
T Consensus 203 p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~ 259 (471)
T KOG1799|consen 203 PVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPI 259 (471)
T ss_pred CceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChh
Confidence 44678999999999999998865 2333222211122234576 88998888884
No 478
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=25.13 E-value=17 Score=41.56 Aligned_cols=48 Identities=23% Similarity=0.554 Sum_probs=0.0
Q ss_pred cccccCcc--hhHhhCccccc---------ccccccceeecccCccCccchhhcCccCc
Q psy9410 605 ENKCIGCT--LCIQSCPVDAI---------IGAAKHMHTIFSKLCTGCDLCIKKCPVNC 652 (736)
Q Consensus 605 ~~~Ci~Cg--~C~~~CP~~ai---------~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~A 652 (736)
.+.|..|+ .|..+||.+.- ..+......+....-...+.|-.+||++.
T Consensus 39 ~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~g~~~~a~~~~~~~np~~~~~grvC~~~~ 97 (467)
T TIGR01318 39 ADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRIDEAAELSHQTNTLPEICGRVCPQDR 97 (467)
T ss_pred HHhcccCCCccccccCCCCCcHHHHHHHHHCCCHHHHHHHHHHhCCchHhhcccCCCCC
No 479
>KOG0433|consensus
Probab=23.28 E-value=27 Score=41.23 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=31.5
Q ss_pred eecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHH
Q psy9410 261 LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILE 328 (736)
Q Consensus 261 l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~ 328 (736)
|--+|.||||+.|+.. ||++-+=.....--|-.+++|.+++ .+-...+..+...-|.
T Consensus 607 lDE~G~KMSKSlGNVi----------dP~~v~~G~~k~payGaD~LR~WVA-~~~~t~d~~iGp~il~ 663 (937)
T KOG0433|consen 607 LDENGNKMSKSLGNVV----------DPTMVTDGSLKQPAYGADGLRFWVA-GSENTGESKIGPKILD 663 (937)
T ss_pred ecCCccchhhcccCcC----------CHHHHhCCcccCCCccccceeeeee-cccccCceecCHHHHH
Confidence 5557999999998654 5553221111112288889996666 3333334444444443
No 480
>KOG4258|consensus
Probab=23.24 E-value=20 Score=42.88 Aligned_cols=18 Identities=33% Similarity=1.235 Sum_probs=12.2
Q ss_pred ccccccCc------chhHhhCccc
Q psy9410 604 KENKCIGC------TLCIQSCPVD 621 (736)
Q Consensus 604 d~~~Ci~C------g~C~~~CP~~ 621 (736)
|+..|..| |.|+.+||.+
T Consensus 248 dptaC~aCr~~y~~G~CV~~Cp~~ 271 (1025)
T KOG4258|consen 248 DPTACVACRGLYDDGVCVEACPPD 271 (1025)
T ss_pred ChhHhHHhhccccCCceeccCCcc
Confidence 34667766 5688888864
Done!