Query psy9410
Match_columns 736
No_of_seqs 601 out of 5694
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:30:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 5E-126 2E-130 1056.7 45.1 499 18-540 25-527 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 4E-120 1E-124 1048.0 46.9 492 19-540 66-605 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 2E-107 8E-112 906.8 35.7 444 17-540 94-540 (553)
4 1j09_A Glutamyl-tRNA synthetas 100.0 3.8E-69 1.3E-73 598.4 17.5 287 20-355 2-314 (468)
5 2ja2_A Glutamyl-tRNA synthetas 100.0 4E-68 1.4E-72 591.9 22.3 292 17-355 4-328 (498)
6 4gri_A Glutamate--tRNA ligase; 100.0 5.3E-68 1.8E-72 599.0 20.7 301 19-355 24-344 (512)
7 4g6z_A Glutamate-tRNA ligase; 100.0 4.9E-67 1.7E-71 579.4 19.4 287 18-355 24-334 (490)
8 2cfo_A Glutamyl-tRNA synthetas 100.0 8.4E-67 2.9E-71 583.0 18.4 292 20-355 2-319 (492)
9 3afh_A Glutamyl-tRNA synthetas 100.0 5E-65 1.7E-69 567.4 14.3 277 19-355 25-325 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 6.5E-63 2.2E-67 562.2 12.5 278 18-355 128-429 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 1.2E-61 4.1E-66 541.4 16.9 287 21-355 16-333 (481)
12 1nzj_A Hypothetical protein YA 100.0 4.3E-57 1.5E-61 475.0 19.9 258 18-339 4-284 (298)
13 3tqo_A Cysteinyl-tRNA syntheta 100.0 4.8E-28 1.6E-32 267.8 17.2 268 10-331 16-316 (462)
14 1li5_A Cysrs, cysteinyl-tRNA s 99.9 2.4E-27 8.1E-32 265.0 20.8 269 10-332 13-314 (461)
15 3sp1_A Cysteinyl-tRNA syntheta 99.9 3.1E-25 1.1E-29 246.2 18.9 265 10-333 35-349 (501)
16 1irx_A Lysyl-tRNA synthetase; 99.9 1.4E-26 4.8E-31 263.8 8.1 244 20-331 21-327 (523)
17 3c8z_A Cysteinyl-tRNA syntheta 99.9 9.6E-25 3.3E-29 241.4 20.5 272 10-332 32-340 (414)
18 2csx_A Methionyl-tRNA syntheta 99.8 1E-20 3.4E-25 214.9 15.2 284 21-333 10-345 (497)
19 1iq0_A Arginyl-tRNA synthetase 99.8 1.2E-19 4.1E-24 209.1 12.5 233 19-330 104-465 (592)
20 2d5b_A Methionyl-tRNA syntheta 99.8 5.9E-19 2E-23 200.6 15.5 279 21-332 8-346 (500)
21 4dlp_A Aminoacyl-tRNA syntheta 99.7 8.2E-17 2.8E-21 184.2 14.6 280 21-332 30-370 (536)
22 3fnr_A Arginyl-tRNA synthetase 99.7 6.2E-17 2.1E-21 179.9 13.1 126 162-327 192-328 (464)
23 3h99_A Methionyl-tRNA syntheta 99.7 3.1E-16 1.1E-20 180.3 19.2 289 14-336 12-400 (560)
24 1f7u_A Arginyl-tRNA synthetase 99.7 2.1E-16 7E-21 181.5 12.2 200 16-302 141-427 (607)
25 2x1l_A Methionyl-tRNA syntheta 99.7 1.7E-16 5.7E-21 181.3 11.4 275 21-333 17-360 (524)
26 2zue_A Arginyl-tRNA synthetase 99.6 5.1E-16 1.7E-20 179.5 12.2 231 16-328 117-497 (629)
27 3kfl_A Methionyl-tRNA syntheta 99.6 1.5E-14 5.2E-19 166.1 15.8 280 21-332 31-388 (564)
28 3u1f_A Methionyl-tRNA syntheta 99.4 2E-13 6.9E-18 156.5 9.5 92 21-116 14-125 (542)
29 1rqg_A Methionyl-tRNA syntheta 99.4 5.1E-13 1.7E-17 157.2 12.8 92 21-116 7-119 (722)
30 2dlc_X Tyrosyl-tRNA synthetase 99.4 1E-12 3.5E-17 143.5 10.4 179 19-274 41-234 (394)
31 3i9v_3 NADH-quinone oxidoreduc 99.2 2.6E-11 8.9E-16 144.4 8.7 107 553-659 109-241 (783)
32 2ivf_B Ethylbenzene dehydrogen 99.2 6.8E-12 2.3E-16 134.1 3.2 87 536-659 146-241 (352)
33 2vpz_B NRFC protein; oxidoredu 99.2 1.2E-11 4.2E-16 122.1 4.5 85 536-659 53-146 (195)
34 1ti6_B Pyrogallol hydroxytrans 99.2 9.8E-12 3.3E-16 129.1 3.5 85 535-658 62-159 (274)
35 3c8y_A Iron hydrogenase 1; dit 99.1 2.7E-11 9.3E-16 139.0 6.0 103 554-657 89-209 (574)
36 2cyb_A Tyrosyl-tRNA synthetase 99.1 1.4E-10 4.9E-15 123.6 9.1 181 17-274 32-221 (323)
37 1kqf_B FDH-N beta S, formate d 99.1 2.6E-11 8.8E-16 127.6 2.7 85 536-658 95-189 (294)
38 1dax_A Ferredoxin I; electron 99.1 4.9E-11 1.7E-15 95.4 2.8 57 600-657 3-63 (64)
39 1h0h_B Formate dehydrogenase ( 99.1 3.5E-11 1.2E-15 120.7 2.3 86 536-658 67-166 (214)
40 3eun_A Ferredoxin; electron tr 99.0 9.4E-11 3.2E-15 98.9 4.2 56 602-658 2-63 (82)
41 1n3l_A Tyrosyl-tRNA synthetase 99.0 5.3E-10 1.8E-14 121.1 10.3 181 17-274 35-229 (372)
42 1dwl_A Ferredoxin I; electron 99.0 1.9E-10 6.6E-15 90.1 5.0 54 601-655 2-58 (59)
43 1xer_A Ferredoxin; electron tr 99.0 9.5E-11 3.2E-15 103.3 3.4 58 599-656 36-101 (103)
44 1h98_A Ferredoxin; electron tr 99.0 1.8E-10 6.1E-15 96.2 4.5 56 602-658 2-59 (78)
45 2fdn_A Ferredoxin; electron tr 99.0 2.1E-10 7.1E-15 88.8 4.4 50 605-655 5-54 (55)
46 7fd1_A FD1, protein (7-Fe ferr 99.0 2.3E-10 7.9E-15 101.5 5.0 56 602-658 2-59 (106)
47 1rgv_A Ferredoxin; electron tr 99.0 1.5E-10 5E-15 97.2 3.5 56 602-658 2-63 (80)
48 1rof_A Ferredoxin; electron tr 99.0 1.5E-10 5E-15 91.1 3.0 55 601-656 3-59 (60)
49 1f2g_A Ferredoxin II; electron 99.0 1.5E-10 5.1E-15 90.6 3.0 53 601-655 2-57 (58)
50 2fgo_A Ferredoxin; allochromat 99.0 2.1E-10 7.1E-15 96.8 3.8 56 602-658 2-63 (82)
51 1bc6_A 7-Fe ferredoxin; electr 99.0 2E-10 6.8E-15 95.6 3.6 55 602-657 2-58 (77)
52 1q16_B Respiratory nitrate red 99.0 1.2E-10 4E-15 129.6 2.8 85 536-657 179-272 (512)
53 1iqz_A Ferredoxin; iron-sulfer 99.0 1.4E-10 4.9E-15 97.5 2.7 58 600-658 3-71 (81)
54 1jb0_C Photosystem I iron-sulf 99.0 2.1E-10 7.2E-15 96.0 3.3 59 601-659 3-68 (80)
55 2zvs_A Uncharacterized ferredo 98.9 3.4E-10 1.1E-14 96.2 3.4 56 602-658 2-64 (85)
56 3gyx_B Adenylylsulfate reducta 98.9 4.8E-10 1.7E-14 107.7 3.9 59 601-659 2-67 (166)
57 2v2k_A Ferredoxin; iron, trans 98.9 7.8E-10 2.7E-14 97.9 4.9 56 602-658 2-59 (105)
58 3i9v_9 NADH-quinone oxidoreduc 98.9 5.1E-10 1.7E-14 109.2 3.7 56 604-659 49-119 (182)
59 1jnr_B Adenylylsulfate reducta 98.9 7.3E-10 2.5E-14 104.6 4.0 59 601-659 3-68 (150)
60 1hfe_L Protein (Fe-only hydrog 98.8 1.4E-09 4.9E-14 120.0 5.0 61 595-655 21-83 (421)
61 1sj1_A Ferredoxin; thermostabi 98.8 9.4E-10 3.2E-14 88.2 1.9 57 600-657 3-65 (66)
62 2c42_A Pyruvate-ferredoxin oxi 98.6 1.7E-08 5.8E-13 124.4 6.1 61 599-659 679-767 (1231)
63 2ivf_B Ethylbenzene dehydrogen 98.5 3E-08 1E-12 105.9 4.1 60 599-658 142-204 (352)
64 2vpz_B NRFC protein; oxidoredu 98.5 3.3E-08 1.1E-12 97.5 3.5 59 600-658 50-110 (195)
65 1q16_B Respiratory nitrate red 98.4 1E-07 3.6E-12 105.9 4.2 60 599-658 175-237 (512)
66 1gte_A Dihydropyrimidine dehyd 98.3 1.6E-07 5.6E-12 115.1 3.7 61 598-659 943-1008(1025)
67 1kqf_B FDH-N beta S, formate d 98.3 2.3E-07 8E-12 97.3 4.1 58 600-657 92-152 (294)
68 1ti6_B Pyrogallol hydroxytrans 98.3 4.4E-07 1.5E-11 94.1 4.5 57 600-657 60-118 (274)
69 2v0c_A Aminoacyl-tRNA syntheta 98.2 1.1E-06 3.7E-11 105.3 8.1 94 21-116 38-151 (878)
70 4arc_A Leucine--tRNA ligase; l 98.2 1.4E-06 4.7E-11 103.9 8.0 91 23-117 60-172 (880)
71 3mm5_B Sulfite reductase, diss 98.2 2.5E-07 8.6E-12 100.1 1.5 57 600-656 199-259 (366)
72 2g36_A Tryptophanyl-tRNA synth 98.1 3.7E-06 1.3E-10 89.7 8.3 94 21-125 15-116 (340)
73 1wkb_A Leucyl-tRNA synthetase; 98.1 2.6E-06 9E-11 101.9 7.8 92 21-116 39-178 (810)
74 1kf6_B Fumarate reductase iron 98.1 1.2E-07 4.1E-12 96.9 -3.8 95 557-651 89-217 (243)
75 1h0h_B Formate dehydrogenase ( 98.1 1.1E-06 3.9E-11 87.8 2.7 58 600-657 64-129 (214)
76 2wdq_B Succinate dehydrogenase 98.1 6.2E-07 2.1E-11 91.3 0.7 55 599-653 140-221 (238)
77 3or1_B Sulfite reductase beta; 98.1 1.1E-06 3.7E-11 95.6 2.5 58 600-657 210-277 (386)
78 2pa8_D DNA-directed RNA polyme 97.9 2.2E-06 7.5E-11 88.5 2.2 49 609-658 174-222 (265)
79 1i6k_A TRPRS, tryptophanyl-tRN 97.9 1.6E-05 5.4E-10 84.5 7.9 76 26-105 9-90 (328)
80 2yy5_A Tryptophanyl-tRNA synth 97.8 1.4E-05 5E-10 85.4 6.4 90 26-127 12-108 (348)
81 2cya_A Tyrosyl-tRNA synthetase 97.8 3.3E-05 1.1E-09 83.2 8.6 181 17-272 35-243 (364)
82 3mm5_A Sulfite reductase, diss 97.8 4.1E-06 1.4E-10 91.4 1.4 54 600-654 242-302 (418)
83 1gax_A Valrs, valyl-tRNA synth 97.8 3.1E-05 1.1E-09 92.4 8.9 95 21-117 39-169 (862)
84 1ile_A Ilers, isoleucyl-tRNA s 97.8 6.9E-06 2.4E-10 98.2 2.7 90 23-116 45-173 (821)
85 2gmh_A Electron transfer flavo 97.7 1.1E-05 3.7E-10 93.0 3.5 56 602-657 506-572 (584)
86 1ffy_A Isoleucyl-tRNA syntheta 97.7 2.9E-05 9.9E-10 93.5 6.5 92 21-116 53-178 (917)
87 1yi8_B Tryptophanyl-tRNA synth 97.6 4.2E-05 1.4E-09 81.9 5.9 95 19-125 24-125 (351)
88 7fd1_A FD1, protein (7-Fe ferr 97.6 1.7E-05 5.9E-10 69.8 2.1 54 538-627 5-58 (106)
89 1wz2_A Leucyl-tRNA synthetase; 97.6 5.4E-05 1.8E-09 91.9 6.2 93 21-117 39-179 (967)
90 2el7_A Tryptophanyl-tRNA synth 97.6 0.00012 4E-09 78.0 8.0 90 26-125 9-107 (337)
91 2v2k_A Ferredoxin; iron, trans 97.5 9.5E-06 3.2E-10 71.3 -0.6 86 538-659 5-91 (105)
92 3j16_B RLI1P; ribosome recycli 97.5 4.3E-05 1.5E-09 87.9 3.5 61 599-659 7-76 (608)
93 2bs2_B Quinol-fumarate reducta 97.5 1.7E-05 5.8E-10 80.7 -0.1 49 603-651 146-221 (241)
94 2fdn_A Ferredoxin; electron tr 97.4 0.0001 3.5E-09 56.2 3.6 25 601-625 30-54 (55)
95 3or1_A Sulfite reductase alpha 97.3 3.6E-05 1.2E-09 84.0 0.8 41 612-653 278-318 (437)
96 2h88_B Succinate dehydrogenase 97.3 5.6E-05 1.9E-09 77.4 1.0 50 602-651 152-228 (252)
97 1bc6_A 7-Fe ferredoxin; electr 97.2 0.0002 6.8E-09 58.8 3.9 27 600-626 31-57 (77)
98 1rgv_A Ferredoxin; electron tr 97.1 0.0003 1E-08 58.2 4.1 27 601-627 30-62 (80)
99 3i9v_9 NADH-quinone oxidoreduc 97.1 0.00018 6E-09 69.6 2.8 28 600-627 90-117 (182)
100 3cf4_A Acetyl-COA decarboxylas 97.1 4.6E-05 1.6E-09 90.0 -1.9 55 601-655 410-472 (807)
101 2fgo_A Ferredoxin; allochromat 97.1 0.00032 1.1E-08 58.3 3.8 27 601-627 30-62 (82)
102 2zp1_A Tyrosyl-tRNA synthetase 97.1 0.00073 2.5E-08 71.2 7.3 97 19-128 30-134 (314)
103 3eun_A Ferredoxin; electron tr 97.1 0.00027 9.1E-09 58.9 3.1 28 600-627 29-62 (82)
104 3gyx_B Adenylylsulfate reducta 97.1 0.00016 5.3E-09 69.1 1.7 27 600-626 38-64 (166)
105 1jnr_B Adenylylsulfate reducta 97.0 0.00018 6.3E-09 67.4 1.9 26 601-626 40-65 (150)
106 1h98_A Ferredoxin; electron tr 97.0 0.00024 8.3E-09 58.5 2.1 27 601-627 32-58 (78)
107 2zvs_A Uncharacterized ferredo 96.9 0.00059 2E-08 57.2 3.8 27 601-627 30-63 (85)
108 3bk7_A ABC transporter ATP-bin 96.8 0.00051 1.7E-08 79.1 3.8 59 597-655 18-86 (607)
109 1xer_A Ferredoxin; electron tr 96.8 0.00045 1.5E-08 60.0 2.1 26 601-626 76-101 (103)
110 4djd_C C/Fe-SP, corrinoid/iron 96.7 0.0011 3.8E-08 72.0 4.7 51 536-586 12-62 (446)
111 3mm5_B Sulfite reductase, diss 96.6 0.00028 9.7E-09 76.1 -0.3 51 542-626 209-259 (366)
112 1f2g_A Ferredoxin II; electron 96.4 0.00087 3E-08 51.4 1.3 25 601-625 31-57 (58)
113 1dwl_A Ferredoxin I; electron 96.4 0.0017 5.9E-08 49.7 3.0 23 603-625 36-58 (59)
114 1rof_A Ferredoxin; electron tr 96.4 0.0022 7.7E-08 49.2 3.4 23 604-626 37-59 (60)
115 1dax_A Ferredoxin I; electron 96.3 0.00075 2.6E-08 53.0 0.6 23 604-626 40-62 (64)
116 1wkb_A Leucyl-tRNA synthetase; 96.2 0.002 7E-08 76.9 3.8 64 253-332 635-699 (810)
117 1hfe_L Protein (Fe-only hydrog 96.2 0.0013 4.5E-08 72.3 1.9 22 604-625 62-83 (421)
118 3or1_B Sulfite reductase beta; 96.2 0.0007 2.4E-08 73.5 -0.7 28 600-627 250-277 (386)
119 1wz2_A Leucyl-tRNA synthetase; 96.0 0.0035 1.2E-07 76.1 4.1 61 256-332 639-699 (967)
120 2h9a_A Carbon monoxide dehydro 95.9 0.0016 5.4E-08 71.5 0.4 50 536-585 12-61 (445)
121 3vr8_B Iron-sulfur subunit of 95.8 0.0018 6.2E-08 66.8 0.4 47 605-651 179-252 (282)
122 3mm5_A Sulfite reductase, diss 95.6 0.0031 1.1E-07 68.7 1.3 28 599-626 277-304 (418)
123 1ile_A Ilers, isoleucyl-tRNA s 95.6 0.011 3.6E-07 70.7 6.1 60 262-337 586-645 (821)
124 3hzr_A Tryptophanyl-tRNA synth 95.2 0.021 7.1E-07 61.6 6.1 82 21-105 85-174 (386)
125 1jb0_C Photosystem I iron-sulf 95.0 0.0085 2.9E-07 49.0 1.9 26 632-657 4-29 (80)
126 2c42_A Pyruvate-ferredoxin oxi 95.0 0.0062 2.1E-07 75.3 1.4 26 600-625 736-763 (1231)
127 3j16_B RLI1P; ribosome recycli 94.6 0.01 3.5E-07 68.2 2.0 30 596-625 43-72 (608)
128 1h3f_A Tyrosyl-tRNA synthetase 94.6 0.039 1.3E-06 60.4 6.4 59 210-274 179-239 (432)
129 2gmh_A Electron transfer flavo 94.5 0.0056 1.9E-07 70.3 -0.7 58 538-626 513-571 (584)
130 1ffy_A Isoleucyl-tRNA syntheta 94.4 0.033 1.1E-06 67.0 5.9 55 259-330 586-641 (917)
131 1iqz_A Ferredoxin; iron-sulfer 94.2 0.018 6.2E-07 47.3 2.2 25 631-656 4-28 (81)
132 3c8y_A Iron hydrogenase 1; dit 94.1 0.0065 2.2E-07 69.5 -1.1 27 601-627 183-209 (574)
133 1gte_A Dihydropyrimidine dehyd 93.7 0.012 4.1E-07 72.1 0.1 26 601-627 980-1006(1025)
134 3tzl_A Tryptophanyl-tRNA synth 93.7 0.072 2.5E-06 56.1 6.0 89 26-125 11-105 (322)
135 1gax_A Valrs, valyl-tRNA synth 93.5 0.089 3.1E-06 62.8 7.0 55 262-332 523-577 (862)
136 3i9v_3 NADH-quinone oxidoreduc 93.3 0.025 8.7E-07 67.1 2.0 20 607-626 219-238 (783)
137 3a04_A Tryptophanyl-tRNA synth 93.1 0.11 3.9E-06 55.7 6.5 97 6-107 59-164 (372)
138 3foc_A Tryptophanyl-tRNA synth 93.0 0.098 3.4E-06 57.3 5.8 75 21-98 94-178 (451)
139 1sj1_A Ferredoxin; thermostabi 92.9 0.042 1.4E-06 42.7 2.1 24 632-656 5-28 (66)
140 3hv0_A Tryptophanyl-tRNA synth 92.7 0.14 4.8E-06 55.3 6.5 74 25-101 81-164 (393)
141 3jxe_A Tryptophanyl-tRNA synth 92.2 0.29 9.9E-06 52.7 8.2 87 16-108 72-168 (392)
142 3or1_A Sulfite reductase alpha 91.0 0.081 2.8E-06 57.7 2.3 27 599-625 294-320 (437)
143 4arc_A Leucine--tRNA ligase; l 91.0 0.31 1.1E-05 58.1 7.4 50 267-332 639-688 (880)
144 3prh_A Tryptophanyl-tRNA synth 90.9 0.31 1E-05 52.4 6.6 75 25-104 42-123 (388)
145 2v0c_A Aminoacyl-tRNA syntheta 90.2 0.54 1.8E-05 56.2 8.7 51 266-332 636-686 (878)
146 3tze_A Tryptophanyl-tRNA synth 90.0 0.23 7.9E-06 53.7 4.7 75 22-99 105-188 (406)
147 3sz3_A Tryptophanyl-tRNA synth 89.8 0.39 1.3E-05 50.8 6.2 71 26-99 14-90 (341)
148 3i05_A Tryptophanyl-tRNA synth 89.4 0.2 6.8E-06 54.1 3.6 75 21-98 81-164 (395)
149 3n9i_A Tryptophanyl-tRNA synth 88.6 0.46 1.6E-05 50.3 5.7 70 26-99 23-99 (346)
150 2pa8_D DNA-directed RNA polyme 88.3 0.074 2.5E-06 54.4 -0.6 26 601-627 196-221 (265)
151 3bk7_A ABC transporter ATP-bin 88.0 0.17 5.8E-06 58.1 2.0 28 598-625 59-86 (607)
152 2ip1_A Tryptophanyl-tRNA synth 87.9 0.54 1.9E-05 51.3 5.9 78 25-105 109-197 (432)
153 2j5b_A Tyrosyl-tRNA synthetase 87.6 0.68 2.3E-05 49.1 6.3 74 21-98 45-127 (348)
154 2cyc_A Tyrosyl-tRNA synthetase 87.4 0.54 1.9E-05 50.4 5.4 87 19-110 35-136 (375)
155 3p0j_A Tyrosyl-tRNA synthetase 85.7 2.5 8.6E-05 48.9 10.1 75 21-99 385-470 (690)
156 3cf4_A Acetyl-COA decarboxylas 85.4 0.21 7.3E-06 58.9 1.0 22 603-624 450-471 (807)
157 1r6t_A Tryptophanyl-tRNA synth 84.6 0.75 2.6E-05 50.9 4.9 74 23-99 160-242 (477)
158 1r6u_A Tryptophanyl-tRNA synth 82.9 0.86 2.9E-05 49.8 4.4 75 22-99 112-195 (437)
159 3vgj_A Tyrosyl-tRNA synthetase 80.3 3.4 0.00012 44.1 7.8 72 21-98 61-143 (373)
160 3vr8_B Iron-sulfur subunit of 78.0 0.68 2.3E-05 47.5 1.4 18 605-622 236-253 (282)
161 2wdq_B Succinate dehydrogenase 74.4 1 3.5E-05 44.9 1.5 21 604-624 202-222 (238)
162 1kf6_B Fumarate reductase iron 72.4 1.1 3.9E-05 44.7 1.4 20 604-623 200-219 (243)
163 1jil_A Tyrrs, tyrosyl-tRNA syn 70.9 7 0.00024 42.4 7.2 51 218-274 186-238 (420)
164 2yxn_A Tyrosyl-tRNA synthetase 67.2 2.6 8.7E-05 44.2 2.7 35 24-59 39-74 (322)
165 3p0j_A Tyrosyl-tRNA synthetase 66.2 9 0.00031 44.3 7.2 59 210-273 175-236 (690)
166 2h88_B Succinate dehydrogenase 63.2 2.4 8.2E-05 42.7 1.5 20 604-623 211-230 (252)
167 2jan_A Tyrosyl-tRNA synthetase 63.2 8.4 0.00029 41.9 5.9 51 218-274 187-238 (432)
168 2bs2_B Quinol-fumarate reducta 62.2 2.5 8.7E-05 42.1 1.5 20 604-623 204-223 (241)
169 1y42_X Tyrosyl-tRNA synthetase 47.1 14 0.00049 39.5 4.3 37 22-59 68-105 (392)
170 2ts1_A Tyrosyl-tRNA synthetase 46.0 17 0.00057 39.4 4.6 36 23-59 35-71 (419)
171 2pid_A Tyrosyl-tRNA synthetase 45.2 18 0.00063 38.1 4.8 51 218-274 210-261 (356)
172 2dtg_E Insulin receptor; IR ec 23.6 13 0.00043 44.6 -1.1 18 607-624 224-247 (897)
173 1igr_A Insulin-like growth fac 23.2 15 0.00051 40.5 -0.5 17 607-623 217-239 (478)
174 2pid_A Tyrosyl-tRNA synthetase 21.9 64 0.0022 33.9 4.1 38 21-59 49-87 (356)
175 1t3q_A Quinoline 2-oxidoreduct 20.2 28 0.00096 32.5 0.8 18 603-620 139-156 (168)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=5.3e-126 Score=1056.69 Aligned_cols=499 Identities=51% Similarity=0.882 Sum_probs=473.1
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
++| |||||||||||||||||+||+||++||+|||+|||||||||++|+.++|+++|++||+|||+.||+ +++|||+
T Consensus 25 ~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~wde---~~~~qSe 101 (553)
T 1qtq_A 25 TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSG---NVRYSSD 101 (553)
T ss_dssp SSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSS---SCEEGGG
T ss_pred CceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCCCCC---CCeehcc
Confidence 356 999999999999999999999999999999999999999999999999999999999999999988 6999999
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCC
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSK 176 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~ 176 (736)
|++.|+++|++||++|+||+||||+++|++.|+.+..+|+.++||++++++++.+|++|.+|.+++|.++||+|+++.++
T Consensus 102 r~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~lR~kid~~~~ 181 (553)
T 1qtq_A 102 YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASP 181 (553)
T ss_dssp GHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECSCTTCS
T ss_pred cHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceEEEEecccccC
Confidence 99999999999999999999999999999999888788999999999999999999999999988999999999999999
Q ss_pred CCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCC-CCce
Q psy9410 177 NINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRP-FPKQ 255 (736)
Q Consensus 177 ~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~-~p~~ 255 (736)
+.+++||||||+...+||+|+++|+|||||||||+||||+|||||||||.||+.|+++|.||+++||| . .|+|
T Consensus 182 ~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~------~~~P~~ 255 (553)
T 1qtq_A 182 FIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITI------PVHPRQ 255 (553)
T ss_dssp SGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCC------SCCCEE
T ss_pred CCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCC------CCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 5 6999
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhccc
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDL 335 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l 335 (736)
|+|+||+++|+|||||+++.+|++|+|+||||||++||++||++||+|+||++||+++||++.+..+++..|+++++++|
T Consensus 256 ~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~~~l 335 (553)
T 1qtq_A 256 YEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIREDL 335 (553)
T ss_dssp EEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHHHH
T ss_pred EEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCCC
Q psy9410 336 DIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKN 414 (736)
Q Consensus 336 ~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~~ 414 (736)
+++++|+|+|+||+||.|+|+| +..+.+++|+ ||++ ++|.|.++|+++||||++||++.++|+|+||++
T Consensus 336 ~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~----~p~~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~----- 405 (553)
T 1qtq_A 336 NENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPN----HPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVL----- 405 (553)
T ss_dssp HHHSCEECEESSEEEEEBTTCC-SSCEEEEEES----CSSCGGGCEEEEEECSEEEEETTTEESSCCTTCCSEET-----
T ss_pred ccccccccceeccceEEEEcCC-CceEEEEecC----CCCChHHhhhhHhhCceEEEEHHHhhccCccccccCCC-----
Confidence 9999999999999999999998 5567889999 9999 999999999999999999999999999999999
Q ss_pred CCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCC-CCCCCCCceeEEeccCCCCeeeEEEeCCCcCCCCCCC
Q psy9410 415 SGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTK-LSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPN 493 (736)
Q Consensus 415 ~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~-~~~~~k~~~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~ 493 (736)
|++||||++|+|+|+++++|++|+|++|+|+|+++++++++ ++ +|+|++|||||+.++++++||+||+||++++|+
T Consensus 406 -g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~--~k~k~~ihWv~~~~~~~~~~~~yd~L~~~~~p~ 482 (553)
T 1qtq_A 406 -GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG--RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPG 482 (553)
T ss_dssp -TSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC-------------CEECCEESTTCEEEEEEEECCSBSSSCGG
T ss_pred -CCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCCccc--cccCCEEEEeecCCCEeEEEEecccccCCCCCC
Confidence 99999999999999999999999999999999999987763 34 489999999999999999999999999999998
Q ss_pred cccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 494 IVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 494 ~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
. +++|++++||+|+.++.+++||++..+++++++||+|.||+...
T Consensus 483 ~--~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 527 (553)
T 1qtq_A 483 A--ADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLD 527 (553)
T ss_dssp G--STTGGGGBCTTSEEEEEEEECGGGGGCCTTCEEEETTTEEEESC
T ss_pred c--CcchhhhcCCcchhheeeEecHhHhhCCCCCEEEEEEeeEEEEC
Confidence 5 57999999999999999999999999999999999999997544
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=3.7e-120 Score=1048.02 Aligned_cols=492 Identities=44% Similarity=0.807 Sum_probs=470.0
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
.| |||||||||||||||||+||+||++||+|||+|||||||||++|+.++|+++|++||+|||+.||+ +++|||+|
T Consensus 66 ~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~wde---~~~~qSer 142 (851)
T 2hz7_A 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLDWGE---HFYYASDY 142 (851)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCCCTT---CEEEGGGG
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC---CcccHhhh
Confidence 56 999999999999999999999999999999999999999999999999999999999999999988 69999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCC
Q psy9410 98 FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKN 177 (736)
Q Consensus 98 ~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~ 177 (736)
++.|+++|++||++|+||+||||+++|++.|+.+..+|+.++||+++.++++.+|++|.+|.+.+|.++||+|+++.+++
T Consensus 143 ~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~vlR~Kid~~~~~ 222 (851)
T 2hz7_A 143 FDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPN 222 (851)
T ss_dssp HHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCEEEECCCTTCSS
T ss_pred HHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCeeEEEeccccccC
Confidence 99999999999999999999999999999998777788999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCC-CceE
Q psy9410 178 INMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPF-PKQY 256 (736)
Q Consensus 178 ~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~-p~~~ 256 (736)
.+++||||||++..+||+||++|+|||||||||+||||+|||||||||.||++|+++|.||+++||| .. |.||
T Consensus 223 ~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~------~~~P~~~ 296 (851)
T 2hz7_A 223 MKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNF------DPRPHQY 296 (851)
T ss_dssp GGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTC------SSCCEEE
T ss_pred CCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCC------CCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 54 9999
Q ss_pred EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccC
Q psy9410 257 EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLD 336 (736)
Q Consensus 257 ~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~ 336 (736)
+|+||+++|+|||||+++.+|++|+|+||||||++||++||++||+|+||++||+++||++.+..++++.|+.+++++|+
T Consensus 297 ~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r~~l~ 376 (851)
T 2hz7_A 297 EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLN 376 (851)
T ss_dssp EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHHHHHH
T ss_pred EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc--------------------CCCceEeeecceeeeecccc
Q psy9410 337 IKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY--------------------KEKLRYFPISKILWIERDDF 396 (736)
Q Consensus 337 ~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~--------------------~~g~r~~~~~~~i~ie~~D~ 396 (736)
++++|+|+|+||+||.|+|+|++. .+++|+ ||++ ++|+|+++|+++||||++||
T Consensus 377 ~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~----~p~~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie~~Df 450 (851)
T 2hz7_A 377 HRAPRVMAVLDPVKVTLTNLDGEK--TLSLPY----WPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERDDF 450 (851)
T ss_dssp TTCCEECEESSEEEEEETTCCSCE--EEEEES----SCHHHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEEGGGB
T ss_pred ccccccceEecceeEEEecCCCCe--EEEecC----CcccccccccccccccccccccCccCceEEEEEcCeEEEEHHHh
Confidence 999999999999999999998865 789999 9987 89999999999999999999
Q ss_pred cccCcccccccCCCCCCCCCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCceeEEeccCCCCe
Q psy9410 397 MEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHAL 476 (736)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~~~i~Wvs~~~~~ 476 (736)
++.++|+|+||++ |++||||++|+|+|+++++|.+|+|++|+|+|.+ +++ |+|++|||||+.+++
T Consensus 451 ~e~~~~~~~rl~~------g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~-------~~~--k~k~~ihWv~~~~~~ 515 (851)
T 2hz7_A 451 SPAPPKGFKRLTP------GGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLG-------EDA--KAAGVIHWVSAERAL 515 (851)
T ss_dssp CSSCCTTCCSBCT------TCEEEETTTEEEEEEEEEECTTSCEEEEEEEECC-------TTC--CCSCEECCEETTTCE
T ss_pred hhcccccceecCC------CCEEEecCeEEEEEEEEEecCCCCEEEEEEEEcc-------cCC--ccCceEEEeecCCCe
Confidence 9999999999999 9999999999999999999999999999999952 344 888999999999999
Q ss_pred eeEEEeCCCcCCCCCCCcc--------------------------cCCccccccCCCceeeEEEEecccccccCcccccc
Q psy9410 477 SIEARLYDRLFIDPYPNIV--------------------------NNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQ 530 (736)
Q Consensus 477 ~~ev~~yd~L~~~~~p~~~--------------------------~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q 530 (736)
+++||+||+||++++|+.. .+++|+++|||+|+.++.+++||++..++.+++||
T Consensus 516 ~~e~r~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~Q 595 (851)
T 2hz7_A 516 PAEFRLYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQ 595 (851)
T ss_dssp EEEEEEECCSBSSSCTTCCC----------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEE
T ss_pred eEEEEecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceeeeeEEchhhhhCCCCCEEE
Confidence 9999999999999999741 03589999999999999999999999999999999
Q ss_pred ccccccCccc
Q psy9410 531 FEQNLLPQTQ 540 (736)
Q Consensus 531 ~er~g~~p~~ 540 (736)
|+|.||+...
T Consensus 596 feR~Gyf~~D 605 (851)
T 2hz7_A 596 FERQGYFWRD 605 (851)
T ss_dssp ETTTEEEEEC
T ss_pred EEEeeEEEEc
Confidence 9999997654
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.4e-107 Score=906.83 Aligned_cols=444 Identities=27% Similarity=0.430 Sum_probs=401.7
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCcccccc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYAS 95 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~S 95 (736)
.|+| |||||||||||||||||+|++||++|++|||+|+|||||||++|+.++|+++|++||+|||++||+ ++|||
T Consensus 94 ~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~----~~~qS 169 (553)
T 3aii_A 94 KGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE----TVIQS 169 (553)
T ss_dssp CSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSE----EEEGG
T ss_pred CCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCC----Ccccc
Confidence 4667 999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+|++.|++++++||++|+||+||||++++++.|.. |.+++||+++.++++++|++|.+| .+|.++||+|+++.+
T Consensus 170 dr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~----g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~ 243 (553)
T 3aii_A 170 DRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNR----GEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNH 243 (553)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHT----TCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTC
T ss_pred cCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhc----CCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEccccc
Confidence 99999999999999999999999999999998864 678999999999999999999998 467899999999999
Q ss_pred CCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCce
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 255 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 255 (736)
++.+++||||||+...+||+||++|+|||||||||+||||+|||||||||.||++++++|.||+.+||+ ..|.+
T Consensus 244 ~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~------~~P~y 317 (553)
T 3aii_A 244 PNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGW------EPPEF 317 (553)
T ss_dssp SSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTC------CCCEE
T ss_pred CCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCC------CCCeE
Confidence 999999999999988899999999999999999999999999999999999999999999999999999 78999
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhccc
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDL 335 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l 335 (736)
+||++|+++|+|||||+++.+|++|.|+||||||++||++|+++||+|+||++||+++||++++..|+++.|+++||++|
T Consensus 318 ~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l 397 (553)
T 3aii_A 318 IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSIL 397 (553)
T ss_dssp ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHH
T ss_pred EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeceEEEEecCCCCceEEEEcCCCcCCCCcc-CCCceEeeecceeeeecccccccCcccccccCCCCCCC
Q psy9410 336 DIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKN 414 (736)
Q Consensus 336 ~~~~~r~~~v~~~~kl~~~n~~~~~~~~~~~p~~~~~hp~~-~~g~r~~~~~~~i~ie~~D~~~~~~~~~~~l~~~~~~~ 414 (736)
++.|||+|+|+||+||+|+|+|.+ +.+++|+ ||++ ++|+|+++|+++||||++||+
T Consensus 398 ~~~a~R~~~V~~p~kv~i~n~~~~--~~~~~p~----hp~~~~~G~r~v~~~~~i~ie~~D~~----------------- 454 (553)
T 3aii_A 398 EEEARRYFFAADPVKLEVVGLPGP--VRVERPL----HPDHPEIGNRVLELRGEVYLPGDDLG----------------- 454 (553)
T ss_dssp TTTCEEECEEESEEEEEEETCCSC--EEEEEES----CTTCGGGCEEEEEESSEEEEECTTCC-----------------
T ss_pred hccChhhhhccCcEEEEEeCCCCc--eEEEecC----CCCCCcCccEEEEECCEEEEEcccCC-----------------
Confidence 999999999999999999999832 5789999 9999 999999999999999999996
Q ss_pred CCcEEEecccEEEEEeeeeecCCCcEEEEEEEEeCCCCCCCCCCCCCCCc-eeEEeccCCCCeeeEEEeCCCcCCCCCCC
Q psy9410 415 SGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVK-GNIHWISKSHALSIEARLYDRLFIDPYPN 493 (736)
Q Consensus 415 ~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~~-~~i~Wvs~~~~~~~ev~~yd~L~~~~~p~ 493 (736)
+ ++||||++|+|+|+++. |+|+++++ .+++ |+| ++|||||+.++++++|+. |+
T Consensus 455 ~-~~vrL~~~~~i~~~~~~-----------~~~~~~~~---~~~~--k~k~~~i~Wv~~~~~~~~~~~~---------~~ 508 (553)
T 3aii_A 455 E-GPLRLIDAVNVIYSGGE-----------LRYHSEGI---EEAR--ELGASMIHWVPAESALEAEVIM---------PD 508 (553)
T ss_dssp S-EEEEETTTEEEEEETTE-----------EEEEECSH---HHHH--HHTCEEECCEEGGGCEEEEEEC---------TT
T ss_pred c-CceeecCEEEEEEEEEE-----------EEEeCCch---hhcc--cCCCCEEEEccCCCceEEEEEC---------CC
Confidence 2 57999999999987542 78887765 2333 777 899999998889999983 22
Q ss_pred cccCCccccccCCCceeeEEEEecccccccCccccccccccccCccc
Q psy9410 494 IVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQ 540 (736)
Q Consensus 494 ~~~~~d~~~~inp~S~~~~~~~~Ep~l~~~~~~~~~q~er~g~~p~~ 540 (736)
. + ++.+++||++.++++++.+||+|.||+...
T Consensus 509 ~---~------------~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D 540 (553)
T 3aii_A 509 A---S------------RVRGVIEADASELEVDDVVQLERFGFARLD 540 (553)
T ss_dssp S---C------------EEEEEECGGGGGCCTTCEEEETTTEEEEEE
T ss_pred C---c------------EEEEEEchhHhcCCCCCEEEEEEeEEEEEe
Confidence 1 1 567899999999999999999999997544
No 4
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=3.8e-69 Score=598.42 Aligned_cols=287 Identities=26% Similarity=0.361 Sum_probs=256.1
Q ss_pred E-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Ccccc
Q psy9410 20 I-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRIYY 93 (736)
Q Consensus 20 v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~~~ 93 (736)
| |||||||||+|||||+||||+||++||++||+|||||||||++|+.++|+++|++||+|||++||++| |+|++
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~ 81 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCee
Confidence 5 99999999999999999999999999999999999999999999999999999999999999999976 88999
Q ss_pred ccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee-
Q psy9410 94 ASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN- 172 (736)
Q Consensus 94 ~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~- 172 (736)
||+|+++|++++++|+++|+||+|+||+++++..|+.+. +++++||+++.+++.+ +|.+|. .+++|+|++
T Consensus 82 QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~--~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~ 152 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKG--GYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPR 152 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHS--SCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCS
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcC--CCCCcccCCCHHHHHH---HHhcCC----CceEEEecCC
Confidence 999999999999999999999999999999999886543 7899999999998764 466554 689999986
Q ss_pred -------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHH
Q psy9410 173 -------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 239 (736)
Q Consensus 173 -------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~ 239 (736)
+..++..++||||+|+++ +|||||||+||||+|||||||||+||.+++++|.|++
T Consensus 153 ~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg------------~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~ 220 (468)
T 1j09_A 153 PGTTEVKDELRGVVVYDNQEIPDVVLLKSDG------------YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLY 220 (468)
T ss_dssp SCEEEEEETTTEEEEEEGGGSCCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHH
T ss_pred CCceEEEeccceeEeecccCCCCeEEEecCC------------CeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHH
Confidence 445567789999999997 6999999999999999999999999999999999999
Q ss_pred hhcccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 240 NKIDKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
++||| ..| +|+|+ +.+|+|||||+++. +|++|+++||+|+||+|||.++||
T Consensus 221 ~alg~------~~p---~~~h~~li~~~~g~klSKR~g~~----------------~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 221 RAFGW------EAP---RFYHMPLLRNPDKTKISKRKSHT----------------SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp HHHTC------CCC---EEEEECCCBCTTSCBCCTTTSCC----------------BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred HHcCC------CCC---eEEEeeeeeCCCCCccccccchh----------------hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 99999 667 78996 44799999999642 799999999999999999999999
Q ss_pred ccCCc--cccHHHHHHHHhcccCCCCCceeEEEeceEEEEec
Q psy9410 316 SKSDS--WINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 316 s~~~~--~~~~~~l~~~~~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+..+. .++++.+ +..++++.+ +++++++||.||.|.|
T Consensus 276 ~~~~~~~~~~~~el--~~~f~~~~~-~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 276 SMPDGREIFTLEEF--IQAFTWERV-SLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CCTTCCSCCCHHHH--HHHCCGGGC-CCSCCBCCHHHHHHHH
T ss_pred CCcccccCCCHHHH--HhhCChhhc-CccccccChHHhhhhc
Confidence 97653 3555433 223677665 4778999999999998
No 5
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=4e-68 Score=591.93 Aligned_cols=292 Identities=21% Similarity=0.350 Sum_probs=256.4
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Cc
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KR 90 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~ 90 (736)
.++| |||||||||+|||||+||||+||++||++||+|||||||||++|++++++++|+++|+|||++||+|| |+
T Consensus 4 ~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~ 83 (498)
T 2ja2_A 4 TETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYG 83 (498)
T ss_dssp CCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred CCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCC
Confidence 3457 99999999999999999999999999999999999999999999999999999999999999999976 89
Q ss_pred cccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhh---cCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEE
Q psy9410 91 IYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINR---GNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVL 167 (736)
Q Consensus 91 ~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r---~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~ 167 (736)
+|+||+|+++|++++++|+++|+||+||||+++|+..| .....++++++||+++.+++.+.+ .+|. .+++
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~---~~g~----~~~i 156 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL---AEGR----QPVV 156 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH---HTTC----CCEE
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh---ccCC----CceE
Confidence 99999999999999999999999999999999999887 222235789999999999876532 2332 5799
Q ss_pred EEEee-------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhH
Q psy9410 168 RVKIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 234 (736)
Q Consensus 168 R~k~~-------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~ 234 (736)
|+|++ +..++..++||||+|+|| +||||||++||||+|||||||||+||.+++++
T Consensus 157 R~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg------------~ptY~lA~vVDD~~mgithviRG~D~~~~t~~ 224 (498)
T 2ja2_A 157 RLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASG------------DPLYTLVNPCDDALMKITHVLRGEDLLPSTPR 224 (498)
T ss_dssp EECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHH
T ss_pred EEECCCCceEEEecccceEeecccccCcceeEccCC------------CcchhhHHHHHhhhcCCCEEEEChhhhhccHH
Confidence 99886 334567789999999997 69999999999999999999999999999999
Q ss_pred HHHHHhhc-----ccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHH
Q psy9410 235 YEWILNKI-----DKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPES 305 (736)
Q Consensus 235 ~~~l~~~l-----~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~pea 305 (736)
|.+++++| || ..| +|+|+ +.+|+|||||+++. +|.+|+++||+|+|
T Consensus 225 q~~l~~aL~~~g~g~------~~P---~~~h~plil~~~g~KLSKR~g~~----------------~l~~~r~~G~~peA 279 (498)
T 2ja2_A 225 QLALHQALIRIGVAE------RIP---KFAHLPTVLGEGTKKLSKRDPQS----------------NLFAHRDRGFIPEG 279 (498)
T ss_dssp HHHHHHHHHHTTSCC------CCC---EEEEECCEECSSSSBCCTTSGGG----------------BHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhhcCCC------CCC---eEEEeeeeECCCCCcccccCCcc----------------cHHHHHhCCCCHHH
Confidence 99999999 98 667 89995 45799999999652 79999999999999
Q ss_pred HHHHHHHcCcccCC--ccccHHHHHHHHhcccCCCCCceeEEEeceEEEEec
Q psy9410 306 IKLFCKRIGVSKSD--SWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 306 i~~~~~~~g~s~~~--~~~~~~~l~~~~~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
|+||+.++||+..+ ..++++.+ +..++++.+ +++.++||+.||.|.|
T Consensus 280 l~~~l~~lG~s~~~~~e~~s~~el--i~~f~~~~~-~~~~a~fd~~kL~~~N 328 (498)
T 2ja2_A 280 LLNYLALLGWSIADDHDLFGLDEM--VAAFDVADV-NSSPARFDQKKADALN 328 (498)
T ss_dssp HHHHHHTSSCCSCSSCCCCCHHHH--HHHCCGGGC-CCSCEECCHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccccCCHHHH--HhhCChhhc-CccccccCHHHHHHhh
Confidence 99999999999765 34555443 334777776 5788999999999988
No 6
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=5.3e-68 Score=599.01 Aligned_cols=301 Identities=26% Similarity=0.331 Sum_probs=252.0
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Cccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRIY 92 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~~ 92 (736)
+| ||||||||||||||||||||+||++||++||+|||||||||++|++++|+++|+++|+||||+||+|| |++|
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py 103 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPY 103 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCc
Confidence 67 99999999999999999999999999999999999999999999999999999999999999999988 7899
Q ss_pred cccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCC----CCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEE
Q psy9410 93 YASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNL----HEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLR 168 (736)
Q Consensus 93 ~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~----~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R 168 (736)
+||+|++.|++++++|+++|+||+|+||++++++.|+.+ ..++++..||+++.++.... + ...+.+++|
T Consensus 104 ~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~---~----~~~~~~~~R 176 (512)
T 4gri_A 104 VQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA---L----IKKIKPVVR 176 (512)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHH---H----HTTCCCEEE
T ss_pred cccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhh---h----hhhccceee
Confidence 999999999999999999999999999999999877532 34567788999887754322 2 234578999
Q ss_pred EEeeccCCCCCCCCcEEEEeccCCccccCC----ccccccccccccchhhhccccceeeccccccCchhHHHHHHhhccc
Q psy9410 169 VKINMKSKNINMRDPIIYRIRHVNHYRTNN----NWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDK 244 (736)
Q Consensus 169 ~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~----~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~ 244 (736)
+|+++.. +..++|.|..+.....+...++ ++.++||||||||||||+|||||||||+||.++|++|.||+++|||
T Consensus 177 ~k~~~~~-~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~ 255 (512)
T 4gri_A 177 FKIPLEG-DTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKW 255 (512)
T ss_dssp ECCCSSC-EEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTC
T ss_pred ecccccC-CceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCC
Confidence 9988642 2233344444333222222222 2234899999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCceEEEEeeec----CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCc
Q psy9410 245 TNFIKRPFPKQYEFSRLNL----THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDS 320 (736)
Q Consensus 245 ~~~~~~~~p~~~~f~~l~~----~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~ 320 (736)
..| .|+|+++ +|+|||||++. + +|.+|+++||.|+||.||++++|||..+.
T Consensus 256 ------~~P---~y~H~pli~~~~g~kLSKR~~~-------~---------~v~~~~~~G~lPeAl~NyLalLGws~~~~ 310 (512)
T 4gri_A 256 ------KPP---IYCHLPMVMGNDGQKLSKRHGS-------T---------ALRQFIEDGYLPEAIINYVTLLGWSYDDK 310 (512)
T ss_dssp ------CCC---EEEEECCCBCTTSSBCCTTTSC-------C---------BHHHHHHHTCCHHHHHHHHHHSSBCSSSS
T ss_pred ------CCC---eEEecchhccccccccCccccc-------c---------cHHHHHHcCCChHHHHHHHHHhCCCCccc
Confidence 778 7999875 68999999953 2 79999999999999999999999998763
Q ss_pred --cccHHHHHHHHhcccCCCCCceeEEEeceEEEEec
Q psy9410 321 --WINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 321 --~~~~~~l~~~~~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
.|+++.|.+. ++++.+ +++.++||+.||.|.|
T Consensus 311 ~Eifs~~eli~~--Fdl~~v-~ks~a~fD~~KL~~~N 344 (512)
T 4gri_A 311 REFFSKNDLEQF--FSIEKI-NKSPAIFDYHKLDFFN 344 (512)
T ss_dssp CCCCCHHHHHHH--CCGGGB-CSSCCBCCHHHHHHHH
T ss_pred chhhhHHHHHHH--HHhcCC-CCCCccccHHHHHHHH
Confidence 3555554333 888887 4889999999999887
No 7
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=4.9e-67 Score=579.44 Aligned_cols=287 Identities=25% Similarity=0.372 Sum_probs=237.9
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
++| |||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|+++|++||+|||++||+ ++|+||+
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~---~~~~qS~ 100 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDE---GPYYQMQ 100 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSE---EEEEGGG
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCC---CCccccc
Confidence 347 999999999999999999999999999999999999999999999999999999999999999998 6899999
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN 172 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~ 172 (736)
|++.|++++++|+++|+||+||||+++++..|+.+. .++|++.||+++.++. ........+++|+|++
T Consensus 101 r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~--------~~~~~g~~~~~R~k~~ 172 (490)
T 4g6z_A 101 RMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL--------PEPPAGVAPVLRFRNP 172 (490)
T ss_dssp CHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC--------CCCCTTCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh--------hhhhcCCCceEEEecC
Confidence 999999999999999999999999999999887654 2458899999985431 1111122577888763
Q ss_pred --------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHH
Q psy9410 173 --------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWI 238 (736)
Q Consensus 173 --------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l 238 (736)
+..++..++||||+|+|| +||||||++||||+|||||||||+||.+++++|.||
T Consensus 173 ~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG------------~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l 240 (490)
T 4g6z_A 173 LTGTVAWDDAVKGRVEISNEELDDLVVARPDG------------TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINI 240 (490)
T ss_dssp CSSEEEEEETTTEEEEEEGGGCCCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHH
T ss_pred CCCcEEEEEeeeeeeeeccccCCCeEEEeeCC------------CccchhHHHHHHHhcCCCEEEeccccccChHHHHHH
Confidence 334567889999999998 599999999999999999999999999999999999
Q ss_pred HhhcccCCcCCCCCCceEEEEeeec----CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcC
Q psy9410 239 LNKIDKTNFIKRPFPKQYEFSRLNL----THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 314 (736)
Q Consensus 239 ~~~l~~~~~~~~~~p~~~~f~~l~~----~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g 314 (736)
+++||| ..| .|+|+++ +|+|||||++ .+ ||.+||++||+|+||+||+.++|
T Consensus 241 ~~aLG~------~~P---~f~HlpLi~~~~g~KLSKR~g-------~~---------sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 241 LRALGG------EVP---VYAHLPTVLNEQGEKMSKRHG-------AM---------SVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp HHHTTC------CCC---EEEEECCEECTTSSBCCTTTT-------CC---------BHHHHHHTTCCHHHHHHHHHTSS
T ss_pred HHHcCC------CCC---eEEEecceeCCCCCcccCCCC-------Cc---------CHHHHHHCCCCHHHHHHHHHHhC
Confidence 999999 678 8999876 7999999994 33 89999999999999999999999
Q ss_pred cccCCc-cccHHHHHHHHhcccCCCCCceeEEEeceEEEEec
Q psy9410 315 VSKSDS-WINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 315 ~s~~~~-~~~~~~l~~~~~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
|+..+. .|+++.| +..++++.+ +++.++||+.||.|.|
T Consensus 296 ~s~~~~e~~s~~el--i~~F~~~~~-~~~~~~fd~~KL~~~N 334 (490)
T 4g6z_A 296 WSHGDAEIFTREQF--VEWFDLEHL-GKSPAQYDHNKLNWLN 334 (490)
T ss_dssp BCCTTCCCCCHHHH--HHHCCGGGB-CSSCEECCHHHHHHHH
T ss_pred CCCCCccccCHHHH--HhhCCHhhC-CCCCCccCHHHHHHHH
Confidence 997654 2444443 233777776 4788999999999988
No 8
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=8.4e-67 Score=582.96 Aligned_cols=292 Identities=25% Similarity=0.350 Sum_probs=255.0
Q ss_pred E-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 20 I-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 20 v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
| |||||||||+|||||+||||+||++||++||+|||||||||+.|+.++|+++|++||+|||++||+ ++++||+|+
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde---~~~~QS~r~ 78 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDE---GPYFQSDRL 78 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSE---EEEEGGGCH
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCC---CCccccCCH
Confidence 5 999999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred HHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec-
Q psy9410 99 DILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM- 173 (736)
Q Consensus 99 ~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~- 173 (736)
+.|++++++|+++|+||+||||+++|+..|+.+. .+.+++.||+++.+++. ++|.+|. .+++|+|++.
T Consensus 79 ~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~ 151 (492)
T 2cfo_A 79 DLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDD 151 (492)
T ss_dssp HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTT
T ss_pred HHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCC
Confidence 9999999999999999999999999998875332 24688999999998775 3466664 6899999863
Q ss_pred -------------cCCCCCC-CCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHH
Q psy9410 174 -------------KSKNINM-RDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 239 (736)
Q Consensus 174 -------------~~~~~~~-~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~ 239 (736)
..++.++ +||||||++.. +|.++|||||||+||||+|||||||||+||..++++|.||+
T Consensus 152 ~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~-------p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~ 224 (492)
T 2cfo_A 152 RQIEWQDLVRGRVSWQGADLGGDMVIARAAPR-------GEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLY 224 (492)
T ss_dssp CEEEEEETTTEEEEEEGGGGCSSEEEECSCCT-------TSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHH
T ss_pred CceEEEecceeeeeecccccCCCeEEEEecCC-------CCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHH
Confidence 3356678 99999999852 26779999999999999999999999999999999999999
Q ss_pred hhcccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 240 NKIDKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
++||| ..| .|+|+ +.+|+|||||+++ + +|++|+++||+|+||+|||+++||
T Consensus 225 ~alg~------~~P---~~~H~plil~~~g~KLSKr~g~-------~---------~l~~~r~~G~~peal~~~l~~lG~ 279 (492)
T 2cfo_A 225 EALGA------TPP---NFAHTPLILNSTGQKLSKRDGV-------T---------SISDFRAMGYLAPALANYMTLLGW 279 (492)
T ss_dssp HHTTC------CCC---EEEEECCEECSSSSBCCTTSSC-------C---------BHHHHHHTTCCHHHHHHHHHHTTB
T ss_pred HHcCC------CCc---eEEEeeeEECCCCCEecccCCc-------c---------cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 99999 667 78895 5589999999964 2 799999999999999999999999
Q ss_pred cc-CCccccHHHHHHHH-hcccCCCCCceeEEEeceEEEEec
Q psy9410 316 SK-SDSWINIEILEQAL-RDDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 316 s~-~~~~~~~~~l~~~~-~~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+. .+. .++..+++++ .++++.+ +++++++|+.||.|.|
T Consensus 280 s~~~~~-~e~~~~~e~i~~f~~~~i-~~~~~~~d~~kl~~~N 319 (492)
T 2cfo_A 280 SPPEGV-GELFTLDLAAKHFSFERI-NKAGARFDWDKLNWLN 319 (492)
T ss_dssp CCCTTT-CSCCCHHHHHHHCCSTTB-CSSCEECCHHHHHHHH
T ss_pred CCCCcc-ccccCHHHHHhhcChhhc-CccccccCHHHHHHHH
Confidence 97 221 1233344444 4788886 5889999999999988
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=5e-65 Score=567.36 Aligned_cols=277 Identities=23% Similarity=0.356 Sum_probs=240.9
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Cccc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRIY 92 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~~ 92 (736)
+| |||||||||+|||||+|+||+||++||++||+|||||||||++|+.++++++|++||+|||++||+|| |+++
T Consensus 25 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~gp~ 104 (488)
T 3afh_A 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPY 104 (488)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCCCCe
Confidence 36 99999999999999999999999999999999999999999999999999999999999999999965 8999
Q ss_pred cccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEee
Q psy9410 93 YASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKIN 172 (736)
Q Consensus 93 ~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~ 172 (736)
+||+|++.|++++++|+++|+||+|+||++++++... + .|... . +.+..|. .+++|+|++
T Consensus 105 ~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~----~----~Y~~~--~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 105 RQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELF----T----TYEYP--H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEE----E----ESSCC--H------HHHHTTC----CEEEEECCC
T ss_pred eeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcC----C----CCCch--h------hHHhcCC----CceEEEECC
Confidence 9999999999999999999999999999999976521 1 23332 1 2344443 679999886
Q ss_pred -------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHH
Q psy9410 173 -------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 239 (736)
Q Consensus 173 -------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~ 239 (736)
+..++.+++||||+|+|| +||||||++||||+|||||||||+||.+++++|.|++
T Consensus 165 ~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG------------~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~ 232 (488)
T 3afh_A 165 PGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIY 232 (488)
T ss_dssp SSEEEEEETTTEEEEEEGGGSCCEEEECTTS------------CBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHH
T ss_pred CCceeEEeccceeEeecCCCCCCeEEEecCC------------CeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHH
Confidence 233456789999999997 6999999999999999999999999999999999999
Q ss_pred hhcccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 240 NKIDKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
++||| ..| +|+|+ +.+|+|||||+++ + +|.+|+++||+|+||+|||.++||
T Consensus 233 ~aLG~------~~P---~f~H~pli~~~~g~KLSKR~g~-------~---------~l~~~r~~G~~peal~n~l~~lG~ 287 (488)
T 3afh_A 233 EAFGW------EAP---VFMHIPLILGSDRTPLSKRHGA-------T---------SVEHFRREGILSRALMNYLALLGW 287 (488)
T ss_dssp HHHTC------CCC---EEEEECCEECTTSSBCCTTTSC-------C---------BHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred HHcCC------CCC---eEEEEeeeeCCCCCcccCcCCc-------c---------cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 99999 667 79997 4479999999964 2 799999999999999999999999
Q ss_pred ccCCccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 316 SKSDSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 316 s~~~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+..+. +...++++++ ++++.+ +++++++|+.||.|.|
T Consensus 288 s~~~~--e~~s~~e~i~~f~~~~i-~~~~~~fd~~kl~~~N 325 (488)
T 3afh_A 288 RVEGD--EIFTIEEKLQSFDPKDI-SNKGVIFDYQKLEWVN 325 (488)
T ss_dssp CCSSC--SCCCHHHHGGGCCGGGS-CSSCEECCHHHHHHHH
T ss_pred CCccc--ccCCHHHHHhhCChhhc-CccccccChHHhhhcc
Confidence 97553 3334555555 688887 5899999999999988
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=6.5e-63 Score=562.18 Aligned_cols=278 Identities=23% Similarity=0.361 Sum_probs=241.8
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Ccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRI 91 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~ 91 (736)
++| |||||||||+|||||+|+|++||++||+|||+|||||||||+.|+.++++++|+++|+|||++||+|| |++
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 467 99999999999999999999999999999999999999999999999999999999999999999964 899
Q ss_pred ccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEe
Q psy9410 92 YYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKI 171 (736)
Q Consensus 92 ~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~ 171 (736)
||||+|++.|++++++|+++|+||+|+||+++|+... ...|+.. . +.+..|. .+++|+|+
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~--------~~~Y~~~--~------~~~~~g~----~~~iR~k~ 267 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKEL--------FTTYEYP--H------EYKEKGH----PVTIKFKV 267 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEEC--------CCCSSCC--H------HHHHTTC----CEEEEECC
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhc--------CCCCCcH--H------HHhhcCC----CceEEEEC
Confidence 9999999999999999999999999999999987661 1134433 1 2344443 67999998
Q ss_pred e-------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHH
Q psy9410 172 N-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWI 238 (736)
Q Consensus 172 ~-------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l 238 (736)
+ +..++.+++||||+|++| +||||||++||||+|||||||||+||++++++|.|+
T Consensus 268 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg------------~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l 335 (592)
T 3al0_C 268 LPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMI 335 (592)
T ss_dssp CSSCCEECCTTTCSEECCSSSSCCEEEECTTS------------CCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHH
T ss_pred CCCCceeeecccceeeeccccCCCeEEEcCCC------------CeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHH
Confidence 6 344567889999999997 699999999999999999999999999999999999
Q ss_pred HhhcccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcC
Q psy9410 239 LNKIDKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 314 (736)
Q Consensus 239 ~~~l~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g 314 (736)
+++||| ..| +|+|+ +.+|+|||||+++ + +|++|+++||+|+||+|||.++|
T Consensus 336 ~~alg~------~~P---~~~hlpli~~~~g~KLSKR~g~-------~---------~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 336 YEAFGW------EAP---VFMHIPLILGSDRTPLSKRHGA-------T---------SVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp HTTTTC------CCC---BCCEECCCBCTTSSBCCTTTCS-------S---------BHHHHHHTTCCHHHHHHHHTTTT
T ss_pred HHHhCC------CCC---eEEEeeeeeCCCCCcccccCCc-------c---------cHHHHHHCCCCHHHHHHHHHHhC
Confidence 999999 667 78897 4479999999964 2 79999999999999999999999
Q ss_pred cccCCccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 315 VSKSDSWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 315 ~s~~~~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
|+..+. +...++++++ ++++.+ ++.++++|+.||.|.|
T Consensus 391 ~s~~~~--e~~s~~e~i~~f~~~~i-~~~~~~fd~~kl~~~N 429 (592)
T 3al0_C 391 WRVEGD--EIFTIEEKLQSFDPKDI-SNKGVIFDYQKLEWVN 429 (592)
T ss_dssp BCCCSC--SCCCTTTTGGGCCTTSB-CSSCCBCCHHHHHHHH
T ss_pred CCCccc--ccCCHHHHHhhCChhhc-CcccceeCHHHHhhhh
Confidence 997553 2233344444 688887 5889999999999888
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-61 Score=541.36 Aligned_cols=287 Identities=26% Similarity=0.388 Sum_probs=251.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCC-----Ccccccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVK-----KRIYYAS 95 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp-----~~~~~~S 95 (736)
+||||||||+|||||+|+|++||++||.+||+|||||||||++|++++++++|+++|+|||++||+|| +++|+||
T Consensus 16 ~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~QS 95 (481)
T 2o5r_A 16 VRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYRQS 95 (481)
T ss_dssp EEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBGG
T ss_pred EEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 6889999
Q ss_pred ccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCC----CCCCCCC--CCCCChhhhHHHHHHhhCCcccCCceEEEE
Q psy9410 96 DYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH----EPGRNSP--FYNRLPSESLNLFRRMRSGEFKDGAHVLRV 169 (736)
Q Consensus 96 e~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~----~~g~~~~--~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~ 169 (736)
+|++.|+++|++|+++|+||+|+||+++++..|+.+. .+.+++. ||+++.+++.+ +|.+|. .+++|+
T Consensus 96 ~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~iR~ 168 (481)
T 2o5r_A 96 ERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPAVFF 168 (481)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCEEEE
T ss_pred ccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cceEEE
Confidence 9999999999999999999999999999988875332 2357777 99999987764 466664 578899
Q ss_pred Eee-------------ccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHH
Q psy9410 170 KIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYE 236 (736)
Q Consensus 170 k~~-------------~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~ 236 (736)
|++ +..++..++||||+|+|| +||||||++||||+|||||||||+||..|+++|.
T Consensus 169 k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~ 236 (481)
T 2o5r_A 169 KMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNG------------LPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQL 236 (481)
T ss_dssp CCCSSCEEEEETTTEEEEECTTSSCBEEEECTTS------------CBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHH
T ss_pred EcCCCceEEEecccceeEeccccCCCeEEEccCC------------CcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHH
Confidence 875 233567789999999997 5999999999999999999999999999999999
Q ss_pred HHHhhcccCCcCCCCCCceEEEEeee----cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHH
Q psy9410 237 WILNKIDKTNFIKRPFPKQYEFSRLN----LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKR 312 (736)
Q Consensus 237 ~l~~~l~~~~~~~~~~p~~~~f~~l~----~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~ 312 (736)
|++++||| ..| .|+|++ .+|+|||||+++ + +|.+|+++||+|+||++|+..
T Consensus 237 ~l~~aLG~------~~p---~~~H~plil~~~G~KLSKR~g~-------~---------~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 237 ALYEAFEK------APP---VFAHVSTILGPDGKKLSKRHGA-------T---------SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp HHHHHTTC------CCC---EEEEECCEECTTSSBCCGGGSC-------C---------BHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHcCC------CCC---eEEEEeeEECCCCCcccCcCCc-------c---------cHHHHHHCCCCHHHHHHHHHH
Confidence 99999998 667 688854 579999999964 2 799999999999999999999
Q ss_pred cCcccCC--ccccHHHHHHHHh-cccCCCCCceeEEEeceEEEEec
Q psy9410 313 IGVSKSD--SWINIEILEQALR-DDLDIKAPRIMAVLNPIKLIISN 355 (736)
Q Consensus 313 ~g~s~~~--~~~~~~~l~~~~~-~~l~~~~~r~~~v~~~~kl~~~n 355 (736)
+||+... ..+++ +++++ ++++.+ ++.+++||+.|+.+.|
T Consensus 292 lG~s~~~~~e~~~~---~e~i~~f~l~~~-~~~~~~fd~~kl~~~n 333 (481)
T 2o5r_A 292 LGWSHPEGKELLTL---EELISSFSLDRL-SPNPAIFDPQKLKWMN 333 (481)
T ss_dssp SSBCCTTCCCCCCH---HHHHHHCCGGGB-CSSCEECCHHHHHHHH
T ss_pred hCCCCCcccccCCH---HHHHHhCChhhC-CccCcccChHHhhhhC
Confidence 9999733 23444 34444 677776 5789999999998887
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=4.3e-57 Score=475.00 Aligned_cols=258 Identities=18% Similarity=0.228 Sum_probs=205.6
Q ss_pred CcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 18 QVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 18 ~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
+.| |||||||||+|||||+|+||+||++||+++|+|+|||||||++|+.++++++|++||+|||++||+ ++++||+
T Consensus 4 ~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~---~~~~qSe 80 (298)
T 1nzj_A 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG---DVLWQSQ 80 (298)
T ss_dssp CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSS---CCEEGGG
T ss_pred CCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCC---CCeeeeC
Confidence 456 999999999999999999999999999999999999999999999999999999999999999998 6999999
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeec---
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINM--- 173 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~--- 173 (736)
|++.|++++++|+++|+||+|+||+++|++... .+++.||+++.+ | ..+++|+|++.
T Consensus 81 r~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-----~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~ 140 (298)
T 1nzj_A 81 RHDAYREALAWLHEQGLSYYCTCTRARIQSIGG-----IYDGHCRVLHHG-----------P----DNAAVRIRQQHPVT 140 (298)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTS-----SCCCTTTTTCCC-----------S----TTCEEEECCSSCCC
T ss_pred CHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCC-----CCCCccccCCcC-----------C----CCCcEEEecCCccc
Confidence 999999999999999999999999999987632 477888887654 1 13566766542
Q ss_pred ----------cCC-CCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhc
Q psy9410 174 ----------KSK-NINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKI 242 (736)
Q Consensus 174 ----------~~~-~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l 242 (736)
..+ +.+++||||+|++| +|||||||+|||++|||||||||.||..++++|.+++++|
T Consensus 141 ~f~D~~~G~~~~~~~~~~~D~VL~R~dG------------~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~al 208 (298)
T 1nzj_A 141 QFTDQLRGIIHADEKLAREDFIIHRRDG------------LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF 208 (298)
T ss_dssp EEEETTTEEEECCHHHHHSCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHH
T ss_pred ceehhhCcccccCcccCCCCEEEECCCC------------CEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHc
Confidence 111 24678999999987 6999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCceEEEEee----ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccC
Q psy9410 243 DKTNFIKRPFPKQYEFSRL----NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 318 (736)
Q Consensus 243 ~~~~~~~~~~p~~~~f~~l----~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~ 318 (736)
|+ ..| .|.|+ +.+|+|||||+++..|++. +| ..++.+|+.++||+..
T Consensus 209 G~------~~p---~~~H~pll~~~~g~KLSKR~g~~~v~~~------~~--------------~~~~~~~l~~lG~~~~ 259 (298)
T 1nzj_A 209 GW------KVP---DYIHLPLALNPQGAKLSKQNHAPALPKG------DP--------------RPVLIAALQFLGQQAE 259 (298)
T ss_dssp TC------CCC---EEEEECBCCC-------------CCCSS------CC--------------HHHHHHHHHHTTCCCC
T ss_pred CC------CCC---eEEEeeeeECCCCCcccccCCccChhcC------Cc--------------cHHHHHHHHHcCCCCC
Confidence 98 667 55665 5579999999988765432 22 2357889999999976
Q ss_pred C--ccccHHH-HHH-HHhcccCCCC
Q psy9410 319 D--SWINIEI-LEQ-ALRDDLDIKA 339 (736)
Q Consensus 319 ~--~~~~~~~-l~~-~~~~~l~~~~ 339 (736)
. ..++.+. |++ +..++++.+.
T Consensus 260 ~~~~~~~~~~~l~~~~~~f~~~~~~ 284 (298)
T 1nzj_A 260 AHWQDFSVEQILQSAVKNWRLTAVP 284 (298)
T ss_dssp SCGGGSCHHHHHHHHHHTCCGGGSC
T ss_pred cccccCCHHHHHHHHHHhCCHhhCC
Confidence 5 3466654 444 4457888874
No 13
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.95 E-value=4.8e-28 Score=267.76 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=189.3
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCccc-------------ccHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNPLK-------------ENKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~~r-------------~~~~~ 69 (736)
+.|.|+.||+| +-++|+|+|++||||+|++++.+.++| +|+..|+.++||+|.+. ...+|
T Consensus 16 e~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~ 95 (462)
T 3tqo_A 16 EIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERF 95 (462)
T ss_dssp EECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHH
T ss_pred eccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 56899999998 778999999999999999999988888 36779999999998533 24689
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcc------cCCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYV------DSQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~------c~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
++.+.+++++||+.+|. ..+++|+|++.+++++++|+++|+||. +||.... + .|-.+
T Consensus 96 ~~~f~~d~~~LgI~~d~---~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~----------~----~yg~L 158 (462)
T 3tqo_A 96 IQILHEDEKALRVLSPD---QEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF----------K----DYGKL 158 (462)
T ss_dssp HHHHHHHHHHHTCCCCS---BCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC----------T----TTTTT
T ss_pred HHHHHHHHHHcCCCCCc---cccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc----------c----ccccc
Confidence 99999999999999976 456899999999999999999999994 3444311 0 11112
Q ss_pred ChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccchhh-hccccce
Q psy9410 144 LPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHPISD-AIENITH 221 (736)
Q Consensus 144 ~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~vdD-~~~gith 221 (736)
+.... +.|..|. | ++....+.+..||+|||.....+|.|.|+| .++|.||+.|++-. ...|-+.
T Consensus 159 s~~~~----~~~~~g~--------r--~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~ 224 (462)
T 3tqo_A 159 SHRHL----DELQAGA--------R--VEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPF 224 (462)
T ss_dssp TTCSC----C----------------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSE
T ss_pred cCCCh----HHhhccC--------c--cccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCe
Confidence 11100 1222221 2 333345677889999999988899999999 89999999996532 2334343
Q ss_pred eec--ccccc-CchhHHHHHHhh-cccCCcCCCCCCce-EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHH
Q psy9410 222 SIC--TLEFQ-DHRPFYEWILNK-IDKTNFIKRPFPKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 296 (736)
Q Consensus 222 vir--g~e~~-~~~~~~~~l~~~-l~~~~~~~~~~p~~-~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l 296 (736)
-|. |.|+. .|.....+...+ .|. ..+.. +|.+++.++|+|||||+++.+ |++++
T Consensus 225 dih~gG~Dl~FpHheneiaqs~a~~g~------p~~~~w~H~g~v~~~G~KMSKSlGN~i---------------~~~dl 283 (462)
T 3tqo_A 225 DIHGGGLDLKFPHHENEIAQSEAGEEK------PFVKLWMHAGLLEINKEKMSKSLGNII---------------SIREA 283 (462)
T ss_dssp EEEEEEGGGTTTHHHHHHHHHHHHHSS------CCEEEEEEECCEEETTEECCTTTTCCC---------------BHHHH
T ss_pred EEEccccccccHHHHhHHHHHHHHcCC------CcceEEEEccEEecCCcCccccCCCcc---------------cHHHH
Confidence 333 33322 132222222222 232 11222 256778899999999998754 89999
Q ss_pred HHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 297 RRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 297 ~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
+++ |.|++||.|++.. .++++..|+.+.|.+..
T Consensus 284 l~~-~g~dalR~~lls~-~yr~~l~fs~~~l~~a~ 316 (462)
T 3tqo_A 284 LKE-SDVEVLRYFLLSG-HYRNPLSYSKENLENGR 316 (462)
T ss_dssp HHH-SCHHHHHHHHHHS-CTTSCEEECHHHHHHHH
T ss_pred Hhh-cChHHhhhhhccC-CCCCCcCcCHHHHHHHH
Confidence 987 9999999877765 56678888888887754
No 14
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.95 E-value=2.4e-27 Score=265.05 Aligned_cols=269 Identities=15% Similarity=0.108 Sum_probs=195.1
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCcccc-------------cHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLKE-------------NKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r~-------------~~~~ 69 (736)
+.|.|+.||+| +-++|+|+|++||||+|++++.+.+||. |++.|+.+++|+|.+.. ...+
T Consensus 13 ~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~ 92 (461)
T 1li5_A 13 EEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRM 92 (461)
T ss_dssp EECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHH
Confidence 57899999998 7778999999999999999999999984 77899999999995422 4588
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCccc------CCCHHHHHHhhcCCCCCCCCCCCCCC
Q psy9410 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD------SQNTEEIYINRGNLHEPGRNSPFYNR 143 (736)
Q Consensus 70 ~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c------~~~~e~l~~~r~~~~~~g~~~~~r~~ 143 (736)
.+.|.+++++|||.++. ..+++|+|.+.+++++++|+++|+||.+ ||..+. . ..|. .|. .
T Consensus 93 ~~~f~~~~~~LgI~~~d---~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~----~----~yg~--lsg-~ 158 (461)
T 1li5_A 93 IAEMHKDFDALNILRPD---MEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD----P----TYGV--LSR-Q 158 (461)
T ss_dssp HHHHHHHHHHTTCCCCS---BCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC----T----TTTT--TTT-C
T ss_pred HHHHHHHHHHcCCCCCc---ccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc----c----cccc--ccC-C
Confidence 89999999999999843 3778999999999999999999999976 565431 0 1111 111 1
Q ss_pred ChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-ccccccccccch-hhhccccce
Q psy9410 144 LPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHPI-SDAIENITH 221 (736)
Q Consensus 144 ~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~~v-dD~~~gith 221 (736)
+. +.|..|. | +.....+.+..||++||.....+|.|.++| .++|.||++|+. .....|.++
T Consensus 159 ~~-------~~l~~g~--------r--v~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~ 221 (461)
T 1li5_A 159 DL-------DQLQAGA--------R--VDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHF 221 (461)
T ss_dssp ---------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSE
T ss_pred CH-------HHhhcCC--------c--ccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCc
Confidence 11 2233332 1 222223556689999998766688999999 569999999875 344557787
Q ss_pred eec--ccccc-CchhHHHHHHhh-cccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHH
Q psy9410 222 SIC--TLEFQ-DHRPFYEWILNK-IDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 296 (736)
Q Consensus 222 vir--g~e~~-~~~~~~~~l~~~-l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l 296 (736)
.|+ |.|+. .|...+.+...+ +|+ ..|..+ +.+++.++|+|||||+++.+ |+.++
T Consensus 222 dih~gG~Dl~fpH~~~~~aq~~a~~g~------~~~~~~~h~g~v~~~G~KMSKS~GN~v---------------~~~dl 280 (461)
T 1li5_A 222 DIHGGGSDLMFPHHENEIAQSTCAHDG------QYVNYWMHSGMVMVDREKMSKSLGNFF---------------TVRDV 280 (461)
T ss_dssp EEEECBGGGTTTHHHHHHHHHHHHSSS------CCEEEECCBCCEEETTBCCCGGGTCCC---------------BHHHH
T ss_pred eEEeccCccCchHHHHHHHHHHHhcCC------CCCcEEEEeeEEEECCeEccccCCCcc---------------ChhHH
Confidence 787 76633 233333333333 364 334433 55778889999999998654 89999
Q ss_pred HHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 297 RRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 297 ~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+++ |.|++||.|++. +...++..|+++.|.+..+
T Consensus 281 l~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~~ 314 (461)
T 1li5_A 281 LKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQARA 314 (461)
T ss_dssp HTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHHHHH
T ss_pred hhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHHHHH
Confidence 987 999999988887 6778888999998877544
No 15
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.93 E-value=3.1e-25 Score=246.24 Aligned_cols=265 Identities=12% Similarity=0.146 Sum_probs=170.8
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCC----------Cccc--------
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDT----------NPLK-------- 64 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDt----------d~~r-------- 64 (736)
+.|.|+. +| +-++|+|+|++||||||++++.+.++| +|...|+.+|+|+ +.+.
T Consensus 35 e~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g 112 (501)
T 3sp1_A 35 SELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKG 112 (501)
T ss_dssp EEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------
T ss_pred ccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcC
Confidence 4578877 67 778899999999999999999888887 5778999999998 4222
Q ss_pred -----ccHHHHHHHHHHHHHcCCCCCCCCCccccccccHHHHHHHHHHHHHcCCCcc-----cCCCHHHHHHhhcCCCCC
Q psy9410 65 -----ENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYV-----DSQNTEEIYINRGNLHEP 134 (736)
Q Consensus 65 -----~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~-----c~~~~e~l~~~r~~~~~~ 134 (736)
....|++.|.++++.||+.+|. ..+.+++|++.+++++++|+++|+||. -||.... . .
T Consensus 113 ~~~~e~a~~~~~~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f----~----~- 180 (501)
T 3sp1_A 113 LTVYEISEFFTEAFFNDCRKLNIVYPD---KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF----K----S- 180 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCCCS---EEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC----T----T-
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCC---cccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc----C----C-
Confidence 2468899999999999999887 566899999999999999999999994 3444320 0 1
Q ss_pred CCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEe---ccCCccccCCcc-cccccccccc
Q psy9410 135 GRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRI---RHVNHYRTNNNW-CIYPMYDYAH 210 (736)
Q Consensus 135 g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~---~~~~h~~~~~~w-~i~PtY~fa~ 210 (736)
|-.++... + -++|..|. +++....+.+..||++||. +....|.|.|+| .++|.||..|
T Consensus 181 -----yG~ls~~~-~--~~~~~~g~----------r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEc 242 (501)
T 3sp1_A 181 -----YGEMAGID-L--IDKDMTLP----------RVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLEC 242 (501)
T ss_dssp -----TTTTTC------------------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHH
T ss_pred -----ccccCCCC-h--hhhhccCC----------ccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHH
Confidence 11222111 1 02343332 1333345677889999987 223457899999 6899999887
Q ss_pred ch----------hhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhc
Q psy9410 211 PI----------SDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEK 279 (736)
Q Consensus 211 ~v----------dD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~ 279 (736)
+. |-|..|+.+++- |.....+...++.- ...+..| +.+++.++|+|||||.+|.+
T Consensus 243 sam~~~~lg~~~DIH~gG~DLifp------HheneiAqs~a~~g-----~~~~~~w~H~g~v~~~G~KMSKSlGN~i--- 308 (501)
T 3sp1_A 243 AAMNLEYFKDALDIHLGGVDHIGV------HHINEIAIAECFLN-----KKWCDVFVHGEFLIMDYNKMSKSRGNFI--- 308 (501)
T ss_dssp HHHHHHHTTTCCCEEEEEGGGTTT------HHHHHHHHHHHHHT-----SCCCSEEEEECCEECC----------CC---
T ss_pred HHHHHHHcCCCceEEeeccccccc------hHHHHHHHHHHccC-----CCCCeEEEEeeeEeeCCeEccccCCCcC---
Confidence 54 333333333332 33333333333321 0123333 56788999999999998755
Q ss_pred cccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 280 KIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 280 ~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
|+.+++++||.|++||.|++.. .++++.+|+.+.|++..+.
T Consensus 309 ------------t~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 309 ------------TVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIA 349 (501)
T ss_dssp ------------CHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHH
T ss_pred ------------CHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHh
Confidence 9999999999999999777766 7778888999988876544
No 16
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.93 E-value=1.4e-26 Score=263.77 Aligned_cols=244 Identities=13% Similarity=0.118 Sum_probs=158.6
Q ss_pred EEEE--CCCCCCcCchhHHHHHHHHHHHH-----HhcCCEEEEEeeCCCccccc--------------------------
Q psy9410 20 ITRF--APEPNGYLHIGHAKSIFINFELA-----YKYNGLCNLRFDDTNPLKEN-------------------------- 66 (736)
Q Consensus 20 v~Rf--aP~PtG~lHiGhar~al~n~~~A-----r~~~G~~ilR~eDtd~~r~~-------------------------- 66 (736)
.++| +|||||++||||+|+++++|++| ++++|+|++||||||+.+.+
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 5677 99999999999999999998885 57899999999999954433
Q ss_pred ----HHHHHHHHHHHHHcCCCCCCCCCccccccc-cHH-HHHHHHHHHHHcC-CCcccCCCHHHHHHhhcCCCCC-----
Q psy9410 67 ----KEYVNSIIKTIKWLNFNWDKVKKRIYYASD-YFD-ILYKIAEYLIISG-DAYVDSQNTEEIYINRGNLHEP----- 134 (736)
Q Consensus 67 ----~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se-~~~-~~~~~a~~Li~~g-~aY~c~~~~e~l~~~r~~~~~~----- 134 (736)
..+.+.|+++|+||||.||. ++||+ |.+ .|.+++++|+++| .+|.|++....+. +...-..
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~-----~~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~--~~~~y~~~~~~~ 173 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDL-----LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIA--KQPPLPENWWPA 173 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEE-----EEHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHT--TCCCCCTTCCSE
T ss_pred HHHHHHHHHHHHHHHHHcCCCceE-----EechhhccchHHHHHHHHHHHchHHHHHHHHhhcccc--ccccccCCceec
Confidence 45999999999999999985 49999 999 9999999999999 7776652111100 0000000
Q ss_pred -CCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc--c---------c
Q psy9410 135 -GRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW--C---------I 202 (736)
Q Consensus 135 -g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w--~---------i 202 (736)
.+...|+..+.+ ++.... .++-|+. ...++.|.+.| . +
T Consensus 174 ~~~~~~~~~~~~~------------------------~~~~~~-----~~~~f~~-~~g~~~~~d~~~G~g~~~w~~d~~ 223 (523)
T 1irx_A 174 MVYCPEHRREAEI------------------------IEWDGG-----WKVKYKC-PEGHEGWVDIRSGNVKLRWRVDWP 223 (523)
T ss_dssp EEECTTTCCEECE------------------------EEECSS-----SCEEECC-SSSCCCEECTTSSCEEECHHHHHH
T ss_pred cccchhhCCcccc------------------------cccCCC-----Cceeeee-cCCCccccCCcCCCCCCCCCcchH
Confidence 011112221100 111100 1233332 22345555555 3 3
Q ss_pred ccccccccchhhhccccceeecc--ccccCchhHHHHHH-hhcccCCcCCCCCCceEEEEeeecC--Ceecchhhhhhhh
Q psy9410 203 YPMYDYAHPISDAIENITHSICT--LEFQDHRPFYEWIL-NKIDKTNFIKRPFPKQYEFSRLNLT--HTITSKRKLLKLL 277 (736)
Q Consensus 203 ~PtY~fa~~vdD~~~githvirg--~e~~~~~~~~~~l~-~~l~~~~~~~~~~p~~~~f~~l~~~--g~klSKr~~~~~v 277 (736)
+|+|+|+++|| .||++|+.+| .++. .++. .++|+ ..|...+++.+..+ |+|||||+++.+
T Consensus 224 ~~~~~l~~~vd--~~G~Dh~~~h~s~~~~------~~i~~~alG~------~~p~~~h~~~i~~~g~g~KmSKs~Gn~i- 288 (523)
T 1irx_A 224 MRWSHFGVDFE--PAGKDHLVAGSSYDTG------KEIIKEVYGK------EAPLSLMYEFVGIKGQKGKMSGSKGNVI- 288 (523)
T ss_dssp HHHHHSCCCBC--CEEHHHHSTTSHHHHH------HHHHHHHHCC------CCCBCCEECCEEESCC---------CCC-
T ss_pred hhHHHcCCCCc--CCCcCccCCCcchhhH------HHHHHHHhCC------CCCeEEEEEEEEeCCCCCCCCCcCCCCC-
Confidence 56677888876 8899999876 2222 2333 68887 56755566667777 889999997644
Q ss_pred hccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHH-HHHHHH
Q psy9410 278 EKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE-ILEQAL 331 (736)
Q Consensus 278 ~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~-~l~~~~ 331 (736)
|+.+++++ |.|+|||+||++.|+.. +..|+++ .|.+..
T Consensus 289 --------------~~~~~~~~-~~pdalR~~l~~~~~~~-~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 289 --------------LLSDLYEV-LEPGLVRFIYARHRPNK-EIKIDLGLGILNLY 327 (523)
T ss_dssp --------------CHHHHHTT-SCHHHHHHHHHSSCTTS-CEEECCSTTHHHHH
T ss_pred --------------CHHHHHHH-cCHHHHHHHHHhcCCCC-CceeCcchhHHHHH
Confidence 89999999 99999999999988754 5567776 565544
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.92 E-value=9.6e-25 Score=241.45 Aligned_cols=272 Identities=14% Similarity=0.088 Sum_probs=179.9
Q ss_pred hccCCCCCCcE--EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCCCccc-------------ccHHH
Q psy9410 10 DKYGNKLPQVI--TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDTNPLK-------------ENKEY 69 (736)
Q Consensus 10 ~~~~~~~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDtd~~r-------------~~~~~ 69 (736)
+.|.| +++| +.++|+|+|++||||+|++++.+.+||. |+..|+..++|.+... ....+
T Consensus 32 ~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~ 109 (414)
T 3c8z_A 32 RPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRE 109 (414)
T ss_dssp EECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHH
T ss_pred ccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHH
Confidence 34666 6776 8889999999999999999999999985 7889999999998443 24678
Q ss_pred HHHHHHHHHHcCCC-CCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHH--HHHhhcCCCCCCCCCCCCCCChh
Q psy9410 70 VNSIIKTIKWLNFN-WDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEE--IYINRGNLHEPGRNSPFYNRLPS 146 (736)
Q Consensus 70 ~~~i~~dl~wLGi~-~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~--l~~~r~~~~~~g~~~~~r~~~~~ 146 (736)
.+.|.++|++|||. +|. .+++|+|.+.+++++++|+++|++|...++.|. .-..... ...|..+ ....+
T Consensus 110 ~~~~~~~~~~Lgi~~~d~----~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~-~~~g~l~---~~~~~ 181 (414)
T 3c8z_A 110 TQLFREDMAALRVLPPHD----YVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADAT-AQFGYES---GYDRD 181 (414)
T ss_dssp HHHHHHHHHHTTCCCCSE----EEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSS-TTTTTTT---CCCHH
T ss_pred HHHHHHHHHHcCCCCCcc----eecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhh-hhhHhhc---CCCHH
Confidence 89999999999999 876 678899999999999999999999976543000 0000000 0011100 11222
Q ss_pred hhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcc-cccccccccc----------chhhh
Q psy9410 147 ESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAH----------PISDA 215 (736)
Q Consensus 147 ~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w-~i~PtY~fa~----------~vdD~ 215 (736)
+.+..+. -+.+.. ....+.+..|+++||.....++.|.++| .++|.||..| ++|.|
T Consensus 182 ~~~~~~~-~~~~~~------------~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~ 248 (414)
T 3c8z_A 182 TMLTLFA-ERGGDP------------DRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQ 248 (414)
T ss_dssp HHHHHHH-HTTCCT------------TCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEE
T ss_pred HHHHHHh-hccccc------------cccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEE
Confidence 2221110 000110 0123446679999998777788899999 5799998765 56667
Q ss_pred ccccceeeccccccCchhHHHHHHhhc-ccCCcCCCCCCce--EEEEeeecCCeecchhhhhhhhhccccCCCCCCCccc
Q psy9410 216 IENITHSICTLEFQDHRPFYEWILNKI-DKTNFIKRPFPKQ--YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPT 292 (736)
Q Consensus 216 ~~githvirg~e~~~~~~~~~~l~~~l-~~~~~~~~~~p~~--~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~t 292 (736)
..|.+|+.. |......+..++ |. .++.. ++.+++.++|+|||||+++.+ |
T Consensus 249 ~~G~D~~~~------H~~~~~a~~~a~~g~------~~~~~~~~h~g~v~~~G~KMSKS~GN~v---------------~ 301 (414)
T 3c8z_A 249 GGGSDLIFP------HHEYSAAHAESVTGE------RRFARHYVHTGMIGWDGHKMSKSRGNLV---------------L 301 (414)
T ss_dssp EEEGGGTTT------HHHHHHHHHHHHHCC------SCSEEEEEEECCBC-------------C---------------B
T ss_pred EeccccccH------HHHHHHHHHHHhcCC------CCcCeEEEEcCEEecCCeEcccccCCcC---------------C
Confidence 777777653 333333333333 53 23332 355788899999999998754 8
Q ss_pred HHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 293 LIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 293 l~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+.+++++||.|+++|.|++. +...++..|+++.+.+..+
T Consensus 302 ~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~ 340 (414)
T 3c8z_A 302 VSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANA 340 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHH
T ss_pred HHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHH
Confidence 99999999999999988888 7778888999998888765
No 18
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.84 E-value=1e-20 Score=214.93 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=171.8
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+.-+|+|||++||||+|++++++.+||. +.|..++++.|+| ++....++++.|.+++++||+
T Consensus 10 ~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 89 (497)
T 2csx_A 10 TTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFLKI 89 (497)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7778999999999999999999999995 5899999999998 666678999999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCCChhh--------
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNRLPSE-------- 147 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~-------- 147 (736)
.+|. .+++|+ |.+.+.++.++|+++|++|.+ +|...+......+....|....| ...++.
T Consensus 90 ~~d~----~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~~~~~~wf~ 164 (497)
T 2csx_A 90 EYTK----FIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIH-QKKCEYIKEPSYFF 164 (497)
T ss_dssp CCSE----EEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------CCEEEEE
T ss_pred cCCC----CccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCC-CCCCeEEecCceEE
Confidence 9997 778888 999999999999999999987 56654322111110000100000 000000
Q ss_pred -----hHHHHHHhhCCcccCCceEEEEEeec-cCCCCCCCCcEEEEe--ccC-CccccCC-ccccccc----cccccchh
Q psy9410 148 -----SLNLFRRMRSGEFKDGAHVLRVKINM-KSKNINMRDPIIYRI--RHV-NHYRTNN-NWCIYPM----YDYAHPIS 213 (736)
Q Consensus 148 -----~~~~~~~m~~g~~~~~~~~~R~k~~~-~~~~~~~~D~Vl~R~--~~~-~h~~~~~-~w~i~Pt----Y~fa~~vd 213 (736)
...+.+....+.. .-.+..+ +-.+ +.-+..++|++|-|. +.. ++|..++ .|.++.- ..|+.++.
T Consensus 165 ~l~~~~~~l~~~~~~~~~-~~~p~~~-~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~ 242 (497)
T 2csx_A 165 RLSKYQDKLLELYEKNPE-FIQPDYR-RNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALE 242 (497)
T ss_dssp CTTSSHHHHHHHHHHCTT-SBCSHHH-HHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTT
T ss_pred EcHHHHHHHHHHHHhCCC-eeCcHHH-HHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCC
Confidence 0000000110000 0000000 0000 000124679999992 210 1111111 1222200 01233333
Q ss_pred h---hccccceeeccccccC-chhHHHHHHhhcccCCcCCCCCCc-eEEEEeeecCCeecchhhhhhhhhccccCCCCCC
Q psy9410 214 D---AIENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDP 288 (736)
Q Consensus 214 D---~~~githvirg~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~-~~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddp 288 (736)
+ ....+++.+.|.|+.. |...+..++.++|+ ..|+ .++.+++..+|+|||||+++.+
T Consensus 243 ~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~------~~~~~~~~~G~v~~~G~KMSKS~GN~i------------ 304 (497)
T 2csx_A 243 DKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGY------ELPKKVFAHGWWTVEGKKMSKTLGNVV------------ 304 (497)
T ss_dssp TTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTC------CCCSCEEEECCEESSSSBCCTTTTCCC------------
T ss_pred CcchhhCCceEEEeecchhHhHHHHHHHHHHHcCC------CCCcEEEECcEEEeCCceeCCcCCCCC------------
Confidence 3 2235666667766543 33344455566776 4555 3467778889999999998654
Q ss_pred CcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 289 RMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 289 r~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
++.+++++ |.++++|.|++..+...++..|+++.+.+..+.
T Consensus 305 ---~~~dli~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 345 (497)
T 2csx_A 305 ---DPYEVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRING 345 (497)
T ss_dssp ---CHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred ---CHHHHHHH-CCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence 78888875 999999999998888888999999998876543
No 19
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.80 E-value=1.2e-19 Score=209.14 Aligned_cols=233 Identities=18% Similarity=0.145 Sum_probs=156.5
Q ss_pred cE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCc-----------------------------
Q psy9410 19 VI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNP----------------------------- 62 (736)
Q Consensus 19 ~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~----------------------------- 62 (736)
+| .-..|+|||++||||+|++++++.+|| +|+..++-.|+|.+.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 55 555699999999999999999999998 355667767777641
Q ss_pred -----------------------------ccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc--HHHHHHHHHHHHHc
Q psy9410 63 -----------------------------LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY--FDILYKIAEYLIIS 111 (736)
Q Consensus 63 -----------------------------~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~--~~~~~~~a~~Li~~ 111 (736)
+...+.+.+.|.+++++|||.+|. ..+.|++ .+.+.+++++|.++
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~----~~~es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDL----LVWESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSE----EEEHHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEE----eccCCcccccchHHHHHHHHHHC
Confidence 122345667889999999999997 5677777 67889999999999
Q ss_pred CCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccCCCCCCCCcEEEEeccC
Q psy9410 112 GDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHV 191 (736)
Q Consensus 112 g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~ 191 (736)
|++|.|. .| ..+|..+++. +--.....+.+.|+.|++|+
T Consensus 260 G~~y~~~---------------~g------------------------~~~G~~~~~~--~~~g~~~~l~~~vi~ksdG~ 298 (592)
T 1iq0_A 260 PHVFRPR---------------EG------------------------KYAGALVMDA--SPVIPGLEDPFFVLLRSNGT 298 (592)
T ss_dssp TTEECCS---------------SS------------------------TTTTCEEEEC--TTTSCSCSCCEEEEECTTSC
T ss_pred CCcccCc---------------cc------------------------CcCCCEEEec--hhcCCCCCCCceEEEecCCc
Confidence 9999761 00 0133444432 10001112234788888875
Q ss_pred CccccCCccccccccc---cccchh------hh-c----------------------ccccee--eccccccCchhHHHH
Q psy9410 192 NHYRTNNNWCIYPMYD---YAHPIS------DA-I----------------------ENITHS--ICTLEFQDHRPFYEW 237 (736)
Q Consensus 192 ~h~~~~~~w~i~PtY~---fa~~vd------D~-~----------------------~githv--irg~e~~~~~~~~~~ 237 (736)
|+|. +|.++. |+ . .+.+|+ |.|.+|..|.++...
T Consensus 299 ------------~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~ 366 (592)
T 1iq0_A 299 ------------ATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRA 366 (592)
T ss_dssp ------------BCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHH
T ss_pred ------------eEEecchHHHHHHHhhhhhhhhhhhhhcCcchhhcccccCcccCCCCCCEEEEEEeccHHHHHHHHHH
Confidence 5553 233433 11 1 167777 689999999999999
Q ss_pred HHhhcccCCcCCCCCC--ceEEEEe--eecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcC-------------
Q psy9410 238 ILNKIDKTNFIKRPFP--KQYEFSR--LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRG------------- 300 (736)
Q Consensus 238 l~~~l~~~~~~~~~~p--~~~~f~~--l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G------------- 300 (736)
++.++|+ ..+ ...+++| ++++|.|||||+|+.+ ++.+|+++|
T Consensus 367 ~~~alG~------~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v---------------~l~dll~~~~~~~~~~~~~~~~ 425 (592)
T 1iq0_A 367 ALALAGY------PALAEKAHHLAYETVLLEGRQMSGRKGLAV---------------SVDEVLEEATRRARAIVEEKNP 425 (592)
T ss_dssp HHHHTTC------HHHHTTEEEEEECCEEETTBCSCC----CC---------------BHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHcCC------CCCCCcEEEEEeeEEEcCCCcccCCCCCcc---------------CHHHHHHHHHHHHHHHHHhhCC
Confidence 9999997 221 3335644 8889999999998654 888888886
Q ss_pred -----------CCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 301 -----------YTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 301 -----------~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
+.+++||.|++.. .+.++..|+|+.+.+.
T Consensus 426 ~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~d~~~~~ 465 (592)
T 1iq0_A 426 DHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRYQEALSF 465 (592)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECHHHHHCS
T ss_pred CCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecHHHHHHH
Confidence 5566666666554 3345666666665443
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.79 E-value=5.9e-19 Score=200.59 Aligned_cols=279 Identities=14% Similarity=0.080 Sum_probs=169.7
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+--+|+|||++||||+|++++.+.+||. ..|..++++.|+| +.....++.+.|.++|++||+
T Consensus 8 ~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 87 (500)
T 2d5b_A 8 TTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGI 87 (500)
T ss_dssp ECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4445788999999999999999999994 5899999999888 555677899999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCCCCCCCCCCCCCChh---------
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLHEPGRNSPFYNRLPS--------- 146 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~~~g~~~~~r~~~~~--------- 146 (736)
.+|. .+++++ |.+.+.++.++|.++|++|.+ +|...+--....+. ..|....| ..+++
T Consensus 88 ~~d~----~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l-~~g~c~~~-~~~v~~~~~~~wf~ 161 (500)
T 2d5b_A 88 AYDD----FIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL-VEGLCPIH-GRPVERRKEGNYFF 161 (500)
T ss_dssp CCSE----EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS-BTTBCTTT-CSBCEEEEEEEEEE
T ss_pred cCCC----CcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhc-cCCcCCCC-CCeeeEEecCceEE
Confidence 9997 778888 899999999999999999976 23322100000000 00110001 00000
Q ss_pred ---h-hHHHHHHhhCCcccCCceEEE--EEeec-cCCCCCCCCcEEEE--eccC-CccccCC-ccccc------------
Q psy9410 147 ---E-SLNLFRRMRSGEFKDGAHVLR--VKINM-KSKNINMRDPIIYR--IRHV-NHYRTNN-NWCIY------------ 203 (736)
Q Consensus 147 ---~-~~~~~~~m~~g~~~~~~~~~R--~k~~~-~~~~~~~~D~Vl~R--~~~~-~h~~~~~-~w~i~------------ 203 (736)
+ ...+.+....+. ..+.- .+-.+ ..-...++|++|.| .+.. ++|..++ ++.+|
T Consensus 162 ~l~~~~~~l~~~~~~~~----~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~ 237 (500)
T 2d5b_A 162 RMEKYRPWLQEYIQENP----DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237 (500)
T ss_dssp CGGGGHHHHHHHHHTCT----TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred EcHHHHHHHHHHHHhCC----CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHH
Confidence 0 000111111100 00000 00000 00013468999999 3310 1111100 00000
Q ss_pred cccccccchhhhccccceeeccccccC-chhHHHHHHhhcccCCcCCCCCCce-EEEEeeec-CCeecchhhhhhhhhcc
Q psy9410 204 PMYDYAHPISDAIENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQ-YEFSRLNL-THTITSKRKLLKLLEKK 280 (736)
Q Consensus 204 PtY~fa~~vdD~~~githvirg~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~-~~f~~l~~-~g~klSKr~~~~~v~~~ 280 (736)
-.|+..+..+++. +.+..+-|.|+.. |...+..++.++|+ ..|.. ++.+++.. +|+|||||+++.+
T Consensus 238 ~g~~~~~~~~~~~-p~di~~~G~D~~~fh~~~~~a~~~~~g~------~~~~~v~~~G~v~~~~G~KMSKS~GN~i---- 306 (500)
T 2d5b_A 238 LDYPEGEAYRTFW-PHAWHLIGKDILKPHAVFWPTMLKAAGI------PMYRHLNVGGFLLGPDGRKMSKTLGNVV---- 306 (500)
T ss_dssp TTTTTCHHHHHHG-GGEEEEEEGGGHHHHHTHHHHHHHHHTC------CCCSEEEEECCEECTTSSCCCTTTTCCC----
T ss_pred cCCCCCchHHHcC-CCeEEEEeechhhhHHHHHHHHHHHcCC------CCCcEEEECceEEeCCCCcccccCCCCC----
Confidence 0233333222332 4455556765543 22233345556676 45653 46678888 9999999998654
Q ss_pred ccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 281 IVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 281 ~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
++.+++++ |.++++|.|++..+...++..|+++.+.+..+
T Consensus 307 -----------~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 307 -----------DPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp -----------CHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred -----------CHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 78888875 99999999999878888899999999887654
No 21
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.69 E-value=8.2e-17 Score=184.19 Aligned_cols=280 Identities=16% Similarity=0.135 Sum_probs=151.3
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCC-------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+.-.|+|||++||||+|++++.+.+|| +|+..|+..+||.+ +......+.+.|.++|++|||
T Consensus 30 ~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 109 (536)
T 4dlp_A 30 TTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNS 109 (536)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 777788899999999999999999998 35667888888865 344467889999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCCC--CCCCC-CCCCCCC--------
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNLH--EPGRN-SPFYNRL-------- 144 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~~--~~g~~-~~~r~~~-------- 144 (736)
.+|. .+++++ +.+.+.++.++|+++|++|.. +|..++..-...+.. ..|.. +.|..-.
T Consensus 110 ~~d~----~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~ 185 (536)
T 4dlp_A 110 SNDD----YIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESY 185 (536)
T ss_dssp CCSE----EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEE
T ss_pred CCCc----ceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccce
Confidence 9997 556665 889999999999999999965 454432100000000 00110 0111100
Q ss_pred ---hhhhH-HHHHHhhCCcccCCceEEE----EEeeccCCCCCCCCcEEEEeccC-CccccCCccccccccc------cc
Q psy9410 145 ---PSESL-NLFRRMRSGEFKDGAHVLR----VKINMKSKNINMRDPIIYRIRHV-NHYRTNNNWCIYPMYD------YA 209 (736)
Q Consensus 145 ---~~~~~-~~~~~m~~g~~~~~~~~~R----~k~~~~~~~~~~~D~Vl~R~~~~-~h~~~~~~w~i~PtY~------fa 209 (736)
..+-. .+.+....+ ...+. .+.-.+.-...++|++|-|.+-. ++|..+++=.++.+|- ++
T Consensus 186 f~~l~~~~~~l~~~~~~~-----~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s 260 (536)
T 4dlp_A 186 FFRLSAYQDKLLDLYENN-----PGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYIT 260 (536)
T ss_dssp EECGGGGHHHHHHHHHHC-----TTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHhC-----CCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHH
Confidence 00000 000111110 00000 00000001235789999996321 1222122112222220 00
Q ss_pred cc-----hhhhcc--cc-ceeeccccccC-chhHHHHHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhc
Q psy9410 210 HP-----ISDAIE--NI-THSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEK 279 (736)
Q Consensus 210 ~~-----vdD~~~--gi-thvirg~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~ 279 (736)
.. -++... .. -|+ -|.|+.. |...+..++.++|+ ..|+.+ -.+++..+|+|||||+|+.+
T Consensus 261 ~~~~~~~~~~~~~~~p~dv~~-~G~D~~~fh~~~~~a~l~a~g~------~~~~~v~~hg~v~~~G~KMSKS~GNvi--- 330 (536)
T 4dlp_A 261 ALGYPDTTDERWAYWPANAHI-IGKDISRFHAVYWPAFLMSAQL------PLPKRVFAHGFLFNRGEKMSKSVGNVI--- 330 (536)
T ss_dssp TTTTTCTTSGGGGGCSCSEEE-EEGGGHHHHHTHHHHHHHHTTC------CCCSCEEEECCEEC------------C---
T ss_pred hcCCCCCchHHHhhCCcceEE-eechHHHHHHHHHHHHHHHCCC------CCCcEEEeeeeEeeCCceecccCCCCC---
Confidence 00 000000 01 233 3555432 33345566667786 456554 33567789999999998754
Q ss_pred cccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 280 KIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 280 ~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
++.++.++ |.++++|.|++..+-...+..|+++.+.+..+
T Consensus 331 ------------~p~d~i~~-~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n 370 (536)
T 4dlp_A 331 ------------DPFELVER-YGLDQLRYFLMREVPFGQDGSYSHEAIVNRTN 370 (536)
T ss_dssp ------------CHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred ------------CHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 77888876 99999999999876666788899998877544
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.69 E-value=6.2e-17 Score=179.93 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=89.3
Q ss_pred CCceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCcccccccc---ccccchhhhcccccee--eccccccCchhHHH
Q psy9410 162 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIENITHS--ICTLEFQDHRPFYE 236 (736)
Q Consensus 162 ~~~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~~~githv--irg~e~~~~~~~~~ 236 (736)
+|+.+++. +..++..|+||.|+||+ ||| |+|.++++..++++++ |.|.|+..|..+..
T Consensus 192 dGa~~~~~-----~~~g~~~~~vl~ksDG~------------~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~ 254 (464)
T 3fnr_A 192 EGKIWLAS-----SQKGDEKDRVIIREDGR------------GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMK 254 (464)
T ss_dssp TTEEEECG-----GGGTCSSCEEEECTTSC------------BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHH
T ss_pred CCeEEEEe-----cccCCCCceEEEeCCCc------------eehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHH
Confidence 55666552 22334468999999997 888 5899999999999999 58999999999999
Q ss_pred HHHhhcccCCcCCCCCCc--eEEEEeeec--CCe--ecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHH
Q psy9410 237 WILNKIDKTNFIKRPFPK--QYEFSRLNL--THT--ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFC 310 (736)
Q Consensus 237 ~l~~~l~~~~~~~~~~p~--~~~f~~l~~--~g~--klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~ 310 (736)
.+++++|+ .++. .+.|+.+++ +|+ |||||+++.+ ++.+++++ +.++++|.|+
T Consensus 255 ~~l~~lG~------~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v---------------~l~dll~~-~g~dalRy~~ 312 (464)
T 3fnr_A 255 AAMEFLGF------DSNNLEIILAQMVSLLKDGEPYKMSKRAGNFI---------------LMSDVVDE-IGSDALRYIF 312 (464)
T ss_dssp HHHHTTTC------CGGGEEEEEECCEEEEETTEECCC---CCSSC---------------BHHHHHHH-HCHHHHHHHT
T ss_pred HHHHHcCC------CccceEEEEeeeEEecCCCcccCCcCcCCCCC---------------CHHHHHhh-ccHHHHHHHH
Confidence 99999997 3332 122333333 786 9999998644 88888887 8899999766
Q ss_pred HHcCcccCCccccHHHH
Q psy9410 311 KRIGVSKSDSWINIEIL 327 (736)
Q Consensus 311 ~~~g~s~~~~~~~~~~l 327 (736)
+.. ...++..|+++.+
T Consensus 313 l~~-~~~~d~~Fd~~~~ 328 (464)
T 3fnr_A 313 LSK-KCDTHLEFDISDL 328 (464)
T ss_dssp TSS-CTTSCEEEEGGGG
T ss_pred Hhc-CCCCCCccCHHHH
Confidence 544 3445556666654
No 23
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.69 E-value=3.1e-16 Score=180.30 Aligned_cols=289 Identities=14% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCCCCcE----EEECCCCCCcCchhHHHHHHHHHHHHHh-----cCCEEEEEeeCC-------------CcccccHHHHH
Q psy9410 14 NKLPQVI----TRFAPEPNGYLHIGHAKSIFINFELAYK-----YNGLCNLRFDDT-------------NPLKENKEYVN 71 (736)
Q Consensus 14 ~~~~~~v----~RfaP~PtG~lHiGhar~al~n~~~Ar~-----~~G~~ilR~eDt-------------d~~r~~~~~~~ 71 (736)
|+.+|++ +--+|+|||++||||+|++++.+.+||. |+..|+..+||. +++.....+.+
T Consensus 12 ~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp -----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455554 4445888899999999999999999983 344555555543 35555678999
Q ss_pred HHHHHHHHcCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc-----CCCHHH--HHH--hhcCCC------CC
Q psy9410 72 SIIKTIKWLNFNWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD-----SQNTEE--IYI--NRGNLH------EP 134 (736)
Q Consensus 72 ~i~~dl~wLGi~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c-----~~~~e~--l~~--~r~~~~------~~ 134 (736)
.|.++|++||+.||. .++++ ++.+...++.++|.++|++|.- ||...+ +.+ ..+... ..
T Consensus 92 ~~~~~~~~lgi~~d~----~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~ 167 (560)
T 3h99_A 92 EHQTDFAGFNISYDN----YHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQY 167 (560)
T ss_dssp HHHHHHHHTTCCCSE----EEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEE
T ss_pred HHHHHHHHcCCCCCC----ceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccc
Confidence 999999999999997 54555 5666677889999999999922 221111 000 000000 00
Q ss_pred CCCC-CCCC-CChhhhHHHHHHhhCCcc-cCC-ceEEE------EEeec---------c--------------CCCCCCC
Q psy9410 135 GRNS-PFYN-RLPSESLNLFRRMRSGEF-KDG-AHVLR------VKINM---------K--------------SKNINMR 181 (736)
Q Consensus 135 g~~~-~~r~-~~~~~~~~~~~~m~~g~~-~~~-~~~~R------~k~~~---------~--------------~~~~~~~ 181 (736)
|..+ .|.. ....+ +..+.- ..| ...++ ++++- . .-..+++
T Consensus 168 gd~ce~cg~~~~~~~-------l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 240 (560)
T 3h99_A 168 GDNCEVCGATYSPTE-------LIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQ 240 (560)
T ss_dssp TTBCTTTCCBCCGGG-------CEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCC
T ss_pred cchhhhccccCChhh-------hcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCC
Confidence 0000 0100 00000 000000 001 11111 11110 0 0012578
Q ss_pred CcEEEEeccC-CccccCCccccccccc-----cccch------------------hhhccccceeeccccccC-chhHHH
Q psy9410 182 DPIIYRIRHV-NHYRTNNNWCIYPMYD-----YAHPI------------------SDAIENITHSICTLEFQD-HRPFYE 236 (736)
Q Consensus 182 D~Vl~R~~~~-~h~~~~~~w~i~PtY~-----fa~~v------------------dD~~~githvirg~e~~~-~~~~~~ 236 (736)
|+.|-|.... +++..+++=.++.+|- +-..+ .|....+.|++ |.|+.. |...+.
T Consensus 241 D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~ 319 (560)
T 3h99_A 241 QWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWP 319 (560)
T ss_dssp CEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHH
T ss_pred CCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHH
Confidence 9999998732 1221111111111220 00001 12223346766 766554 444666
Q ss_pred HHHhhcccCCcCCCCCCceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCc
Q psy9410 237 WILNKIDKTNFIKRPFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 315 (736)
Q Consensus 237 ~l~~~l~~~~~~~~~~p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~ 315 (736)
.++.++|+ ..|..+ -.+++.++|.|||||+++.+ ++.+++++ |.++|+|.|++..+.
T Consensus 320 a~l~~~g~------~~p~~v~~hg~v~~~G~KMSKS~GNvv---------------~p~d~i~~-~GaDalR~~ll~~~~ 377 (560)
T 3h99_A 320 AMLEGSNF------RKPSNLFVHGYVTVNGAKMSKSRGTFI---------------KASTWLNH-FDADSLRYYYTAKLS 377 (560)
T ss_dssp HHHHHTTB------CCCSEEEEECCEEETTEECCTTTTCCC---------------BHHHHHHH-SCHHHHHHHHHHHCC
T ss_pred HHHHhCCC------CCCcEEEEEeEEEeCCeeccccCCCcC---------------CHHHHHHH-cCcHHHHHHHHHhCC
Confidence 78888887 567544 35667889999999998654 88999988 999999999998776
Q ss_pred cc-CCccccHHHHHHH-HhcccC
Q psy9410 316 SK-SDSWINIEILEQA-LRDDLD 336 (736)
Q Consensus 316 s~-~~~~~~~~~l~~~-~~~~l~ 336 (736)
.. .+..|+++.+.+. ++..++
T Consensus 378 ~~~~d~~f~~~~~~~~~~~~l~~ 400 (560)
T 3h99_A 378 SRIDDIDLNLEDFVQRVNADIVN 400 (560)
T ss_dssp SSCCCEEECHHHHHHHHHHHCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHH
Confidence 55 6888999988653 443333
No 24
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.66 E-value=2.1e-16 Score=181.51 Aligned_cols=200 Identities=17% Similarity=0.154 Sum_probs=144.0
Q ss_pred CCCcE-EE-ECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeC-------------------------CC--
Q psy9410 16 LPQVI-TR-FAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDD-------------------------TN-- 61 (736)
Q Consensus 16 ~~~~v-~R-faP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eD-------------------------td-- 61 (736)
.+++| += ..|||||+|||||+|++++++.+|| +|+..++-.+.| ++
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46677 44 4699999999999999999999998 355566666666 11
Q ss_pred ---------------------------------------c------ccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 62 ---------------------------------------P------LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 62 ---------------------------------------~------~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
+ +.....+.+.|.++++.||+.+|. ....|+
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~----~~~ES~ 296 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDV----YSGESQ 296 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSE----EEEGGG
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccee----ecCcch
Confidence 1 111345667889999999999986 667788
Q ss_pred cH-HHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeeccC
Q psy9410 97 YF-DILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175 (736)
Q Consensus 97 ~~-~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~~ 175 (736)
+. +.+.+.++.|.++|++|.. +|..+++. +- .
T Consensus 297 ~~~~~~~~vi~~L~~kG~~ye~--------------------------------------------dGa~~~~~--~~-~ 329 (607)
T 1f7u_A 297 VSKESMLKAIDLFKEKGLTHED--------------------------------------------KGAVLIDL--TK-F 329 (607)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE--------------------------------------------TTEEEEEG--GG-T
T ss_pred hhhhHHHHHHHHHHhCCCEEEE--------------------------------------------CCcEEEEe--cc-c
Confidence 87 7888999999999999931 23444441 10 1
Q ss_pred CCCCCCCcEEEEeccCCccccCCcccccccc---ccccchhhh-ccccceee--ccccccCchhHHHHHHhhcccCCcCC
Q psy9410 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDA-IENITHSI--CTLEFQDHRPFYEWILNKIDKTNFIK 249 (736)
Q Consensus 176 ~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD~-~~githvi--rg~e~~~~~~~~~~l~~~l~~~~~~~ 249 (736)
...+.+.|+.|++|+ |+| |||.++..+ .++.+++| .|.++..|.++...+++++|+
T Consensus 330 -g~~~d~~v~~KsDG~------------~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~----- 391 (607)
T 1f7u_A 330 -NKKLGKAIVQKSDGT------------TLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF----- 391 (607)
T ss_dssp -CTTTCEEEEECTTSC------------CCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTC-----
T ss_pred -CCCCCceeEeccCCC------------cCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCC-----
Confidence 112224788899986 677 667777776 46888887 899999999999999999997
Q ss_pred CCCCceEEEEeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCC
Q psy9410 250 RPFPKQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYT 302 (736)
Q Consensus 250 ~~~p~~~~f~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~ 302 (736)
..+.. +.|+++ .-.+||||+|+.+ ||.+|++..+.
T Consensus 392 -~~~~~--~~Hv~fg~v~kMSkR~G~~v---------------~L~dLlde~~~ 427 (607)
T 1f7u_A 392 -EWAKD--LQHVNFGMVQGMSTRKGTVV---------------FLDNILEETKE 427 (607)
T ss_dssp -GGGGG--EEEECCCCEESCCGGGTCCC---------------BHHHHHHHHHH
T ss_pred -CcCcE--EEEecccccccccCCCCCcc---------------cHHHHHHHHHH
Confidence 33333 555554 1127999998654 89999887433
No 25
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.66 E-value=1.7e-16 Score=181.34 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=163.4
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+=-.|+|||++||||+|++++.+.+||. +.|.-++++.++| +.....++.+.|.+++++||+
T Consensus 17 ~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 17 TTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp EECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 5556999999999999999999999995 5788888888887 333456789999999999999
Q ss_pred CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCccc-----CCCHHHHHHhhcCC--CCCCCCCCCCCC-Chh------
Q psy9410 83 NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYVD-----SQNTEEIYINRGNL--HEPGRNSPFYNR-LPS------ 146 (736)
Q Consensus 83 ~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~~r~~~--~~~g~~~~~r~~-~~~------ 146 (736)
.+|. .+++|+ |.+.+.++.++|.++|++|.. +|...+--....+. ...|..++.|.. +++
T Consensus 97 ~~d~----~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~q 172 (524)
T 2x1l_A 97 SFDR----FIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQT 172 (524)
T ss_dssp CCSE----EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEE
T ss_pred cCCC----CeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCC
Confidence 9996 778888 999999999999999999943 45432100000000 000110110111 110
Q ss_pred ------hhH-HHHHHhhCCcccCCceEEE---EEeec-cCCCCCCCCcEEEEec---cCCccccCCc-----c-------
Q psy9410 147 ------ESL-NLFRRMRSGEFKDGAHVLR---VKINM-KSKNINMRDPIIYRIR---HVNHYRTNNN-----W------- 200 (736)
Q Consensus 147 ------~~~-~~~~~m~~g~~~~~~~~~R---~k~~~-~~~~~~~~D~Vl~R~~---~~~h~~~~~~-----w------- 200 (736)
.-. .+.+....+ ...+. .+-.+ ..-...++|+.|-|.. |.+-| +... |
T Consensus 173 wF~~l~~~~~~l~~~~~~~-----~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~~~~~~yvWfds~~~~ 246 (524)
T 2x1l_A 173 YFFRLSAYTDRLLALYEEH-----PEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DHPDHVMYVWVDALTNY 246 (524)
T ss_dssp EEECGGGSHHHHHHHHHHC-----GGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TEEEEEECHHHHHHTHH
T ss_pred eEeeHHHHHHHHHHHHHhC-----CCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CCCCCEEEEecCCchHH
Confidence 000 000111101 00000 00000 0002357899999853 22222 0001 2
Q ss_pred ---cccccc---cc--ccchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCc-eEEEEeeecCCeecchh
Q psy9410 201 ---CIYPMY---DY--AHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKR 271 (736)
Q Consensus 201 ---~i~PtY---~f--a~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~-~~~f~~l~~~g~klSKr 271 (736)
.+||.- .| --++|-|..|..++. .|......++.++|+ ..|. .+..+++..+|.|||||
T Consensus 247 ~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~------fh~~~~~a~l~~~g~------~~~~~v~~hG~v~~~G~KMSKS 314 (524)
T 2x1l_A 247 LTGVGFPDTESESFRRYWPADLHMIGKDIIR------FHTVYWPAFLMSAGL------PLPKRIFAHGWLLNRGEKMSKS 314 (524)
T ss_dssp HHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH------HHHTHHHHHHHHHTC------CCCSCEEEECCEEECSCSEETT
T ss_pred HHHcCCCCCchHHHHhhCCCeEEEEeechhH------hHHHHHHHHHHHCCC------CCCcEEEECcEEEeCCcccCCc
Confidence 111110 00 001233333333331 122223344555675 4453 44557788899999999
Q ss_pred hhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhc
Q psy9410 272 KLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 333 (736)
Q Consensus 272 ~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~ 333 (736)
+++.+ ++.++.++ |.++++|.|++..+...++..|+++.+.+..+.
T Consensus 315 ~GN~v---------------~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 315 IGNVV---------------DPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp TEESS---------------CHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred CCCCC---------------CHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 98654 78898887 999999999998788788999999999876553
No 26
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.63 E-value=5.1e-16 Score=179.51 Aligned_cols=231 Identities=18% Similarity=0.171 Sum_probs=157.0
Q ss_pred CCCcE--EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCC---------------------------
Q psy9410 16 LPQVI--TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTN--------------------------- 61 (736)
Q Consensus 16 ~~~~v--~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd--------------------------- 61 (736)
.+++| .-..|||||+|||||+|++++++.+|| +|+..++-.|+|..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 35577 445699999999999999999999998 35556666677751
Q ss_pred -----c----------------------------------------ccccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 62 -----P----------------------------------------LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 62 -----~----------------------------------------~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
+ +.....+.+.|.++++.|||.+|. ..+.|+
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~----~~~es~ 272 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDL----LVWESD 272 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSE----EEEHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcccc----ccCcCc
Confidence 1 111345667889999999999987 667888
Q ss_pred c--HHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEEEEeecc
Q psy9410 97 Y--FDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMK 174 (736)
Q Consensus 97 ~--~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R~k~~~~ 174 (736)
+ .+.+.+.++.|.++|++|.+. . | ..+|..+++..
T Consensus 273 ~~~~~~v~~vi~~L~~kG~~y~~~---------------~-----------------------g-e~~Ga~~v~~~---- 309 (629)
T 2zue_A 273 IVRRKLFEIALELLSKNENFYIPS---------------D-----------------------G-KYRGAFVMDLR---- 309 (629)
T ss_dssp HHHTTHHHHHHHHHHTSTTEECCS---------------S-----------------------S-TTTTCEEEECT----
T ss_pred cccchhHHHHHHHHHHCCCccccc---------------c-----------------------C-CcCCcEEEECc----
Confidence 7 667889999999999999431 0 1 11344555421
Q ss_pred CCCCCCCC---cEEEEeccCCccccCCcccccccc---ccccchhh--------hc---------------------ccc
Q psy9410 175 SKNINMRD---PIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISD--------AI---------------------ENI 219 (736)
Q Consensus 175 ~~~~~~~D---~Vl~R~~~~~h~~~~~~w~i~PtY---~fa~~vdD--------~~---------------------~gi 219 (736)
..+...| .|+.|++|+ ++| |+|..... .. .+.
T Consensus 310 -~~g~~~~~~~~v~~ksdG~------------~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg~~~~~ 376 (629)
T 2zue_A 310 -KLFPDMKNPILVLRRSDGT------------ATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNA 376 (629)
T ss_dssp -TTCSSSSCCEEEEECTTSC------------BCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCC
T ss_pred -ccCCccccCceEEEecCCc------------cccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCCccCCC
Confidence 1222223 677787775 444 23332221 00 144
Q ss_pred cee--eccccccCchhHHHHHHhhcccCCcCCCCC-C-c--eEEEEeeecCCeecchhhh--hhhhhccccCCCCCCCcc
Q psy9410 220 THS--ICTLEFQDHRPFYEWILNKIDKTNFIKRPF-P-K--QYEFSRLNLTHTITSKRKL--LKLLEKKIVDGWDDPRMP 291 (736)
Q Consensus 220 thv--irg~e~~~~~~~~~~l~~~l~~~~~~~~~~-p-~--~~~f~~l~~~g~klSKr~~--~~~v~~~~~~gwddpr~~ 291 (736)
+|+ |.|.++..|..+...++.++|+ .. + . ++-|+.++++|.|||||+| +.+
T Consensus 377 d~~IyV~g~~q~~~~~~l~~~l~~lG~------~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v--------------- 435 (629)
T 2zue_A 377 NIVINVIGAEQKHPQLAIKYALQLLGF------EDAAANLYHLAYEHVERPEGKFSGRKGTWVGF--------------- 435 (629)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTC------HHHHHTEEEEEECCEEBTTBCCCTTTTTTTTC---------------
T ss_pred CcEEEEEeCcHhhHHHHHHHHHHHcCC------CCCCCeEEEEEeeeEEcCCCcccCCCCCCCee---------------
Confidence 554 3577777777888888888887 22 2 1 2234668889999999998 755
Q ss_pred cHHHHHHcC--------------------------CCHHHHHHHHHHcCcccCCccccHHHHH
Q psy9410 292 TLIGMRRRG--------------------------YTPESIKLFCKRIGVSKSDSWINIEILE 328 (736)
Q Consensus 292 tl~~l~~~G--------------------------~~peai~~~~~~~g~s~~~~~~~~~~l~ 328 (736)
++.+|++++ +.++|+|.|++... ..++.+|+|+.+.
T Consensus 436 ~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~-~~~~~~Fd~d~~~ 497 (629)
T 2zue_A 436 TVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYS-PDKKIIFRWEDVL 497 (629)
T ss_dssp BHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSC-TTSCEECCHHHHS
T ss_pred eHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcC-CCCCCeecHHHHH
Confidence 888888874 77889997777754 4677788888764
No 27
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.57 E-value=1.5e-14 Score=166.06 Aligned_cols=280 Identities=14% Similarity=0.159 Sum_probs=160.6
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHH-----hcCCEEEEEeeCCCc-------------ccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAY-----KYNGLCNLRFDDTNP-------------LKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar-----~~~G~~ilR~eDtd~-------------~r~~~~~~~~i~~dl~wLGi 82 (736)
+--.|+|||++||||+|++++.+.+|| +|+..|+.-+||.+. +....++.+.|.+++++|||
T Consensus 31 ~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi 110 (564)
T 3kfl_A 31 TTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNY 110 (564)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 666788999999999999999999998 467788888887763 33457888999999999999
Q ss_pred CCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc-----CCCHHHHHH-hh---cCCCCCCCCCC--CCCCC-hh--
Q psy9410 83 NWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD-----SQNTEEIYI-NR---GNLHEPGRNSP--FYNRL-PS-- 146 (736)
Q Consensus 83 ~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c-----~~~~e~l~~-~r---~~~~~~g~~~~--~r~~~-~~-- 146 (736)
.+|. .++++ +|.+.++++.++|.++|++|.. +|...+--- .+ ......|..+. |+..+ ++
T Consensus 111 ~~D~----~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~ 186 (564)
T 3kfl_A 111 DMNY----FIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWV 186 (564)
T ss_dssp CCSE----EEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEE
T ss_pred CCCc----cccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEE
Confidence 9996 45565 5888899999999999999954 444332100 00 00000011100 01111 00
Q ss_pred ----------hhH-HHHHHhhCCcccCCceEEE---EEee-ccCCCCCCCCcEEEEe---ccC-CccccCCcccccccc-
Q psy9410 147 ----------ESL-NLFRRMRSGEFKDGAHVLR---VKIN-MKSKNINMRDPIIYRI---RHV-NHYRTNNNWCIYPMY- 206 (736)
Q Consensus 147 ----------~~~-~~~~~m~~g~~~~~~~~~R---~k~~-~~~~~~~~~D~Vl~R~---~~~-~h~~~~~~w~i~PtY- 206 (736)
.-. .+.+-...+ ...+. .+-. .+.-...++|+.|-|. +.. .+|..+++=.++.+|
T Consensus 187 ~~~~~f~~l~~~~~~l~~~~~~~-----~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWf 261 (564)
T 3kfl_A 187 EEENYMFRLSAFRERLLKYFHDH-----PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWL 261 (564)
T ss_dssp EEEEEEECGGGGHHHHHHHHHHC-----TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHH
T ss_pred ecceeEEEHHHHHHHHHHHHHhC-----CCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEec
Confidence 000 011111110 00000 0000 0000125789999993 311 111111110111111
Q ss_pred c-----cccc---hh---------hh--cc--c-cceeeccccccC-chhHHHHHHhhcccCCcCCCCCCceE-EEEeee
Q psy9410 207 D-----YAHP---IS---------DA--IE--N-ITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQY-EFSRLN 262 (736)
Q Consensus 207 ~-----fa~~---vd---------D~--~~--g-ithvirg~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~~-~f~~l~ 262 (736)
| |+.. -+ |+ .. . --|++ |.|... |...+..++.++|+ ..|+.+ -.+++.
T Consensus 262 Da~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~-GkDii~FH~~~wpa~L~a~g~------~~~~~v~~hg~v~ 334 (564)
T 3kfl_A 262 DALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVV-GKDILKFHAIYWPAFLMSAEL------PLPERLVSHGWWT 334 (564)
T ss_dssp HHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEE-EGGGHHHHHTHHHHHHHHTTC------CCCSCEEEECCEE
T ss_pred cCcHHHHHHhCccccccccccchhcchhhhcCccceEEE-eecccchHHHHHHHHHHhCCC------CCCcEEEEcccEe
Confidence 0 1100 00 00 00 0 11332 544332 33345566677786 456554 445688
Q ss_pred cCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 263 LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 263 ~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
.+|.|||||+|+.+ ++.++.++ |.++++|.|++..+...++.+|+++.+.+.++
T Consensus 335 ~~G~KMSKS~GNvV---------------~p~d~i~~-~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n 388 (564)
T 3kfl_A 335 KDHKKISKSLGNAF---------------DPVEKAKE-FGIDALKYFLMRESNFQDDGDYSDKNMVARLN 388 (564)
T ss_dssp ETTEECCTTTTCCC---------------CHHHHHHH-HCHHHHHHHHHHHCCSSCCEECCHHHHHHHHH
T ss_pred eCCccccccCCCCC---------------CHHHHHHH-cCcHHHHHHHHHcCCcccCCCCCHHHHHHHHH
Confidence 89999999998644 78888876 99999999999866666788999999877544
No 28
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.42 E-value=2e-13 Score=156.50 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
|==.|+|||.||||||++.++.+.++|. ..|.-++-+.+|| |+....+|.+.|.+++++||+
T Consensus 14 ttp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi 93 (542)
T 3u1f_A 14 TSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDY 93 (542)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3334899999999999999999999984 3455555566665 233357889999999999999
Q ss_pred CCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCcc
Q psy9410 83 NWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 83 ~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~ 116 (736)
.+|- .++++ +|.+..++...+|.++|++|.
T Consensus 94 ~~D~----~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 94 SIDY----FIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp CCSE----EEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccCc----CccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 9986 44444 466677788899999999994
No 29
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.41 E-value=5.1e-13 Score=157.21 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=72.5
Q ss_pred EEECCCCCCcCchhHHHH-HHHHHHHHHh--cCC---EEEEEeeCCC-------------cccccHHHHHHHHHHHHHcC
Q psy9410 21 TRFAPEPNGYLHIGHAKS-IFINFELAYK--YNG---LCNLRFDDTN-------------PLKENKEYVNSIIKTIKWLN 81 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~-al~n~~~Ar~--~~G---~~ilR~eDtd-------------~~r~~~~~~~~i~~dl~wLG 81 (736)
|==+|+|||.+||||+++ .++.+.+||. ..| .|+.-+|+.. |+....++.+.|.+++++||
T Consensus 7 tt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lg 86 (722)
T 1rqg_A 7 TSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAK 86 (722)
T ss_dssp EECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 344599999999999998 8999999983 334 4555555443 44445788999999999999
Q ss_pred CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 82 FNWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 82 i~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
|.+|. .+++++ |.+..+++..+|.++|++|.
T Consensus 87 is~D~----~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 87 ISFDF----FGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp CCCSE----EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCC----CeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 99996 566665 77778889999999999994
No 30
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1e-12 Score=143.50 Aligned_cols=179 Identities=11% Similarity=0.041 Sum_probs=118.1
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC----CCccccc--------HHHHHHHHHHHHHcCCCCC
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD----TNPLKEN--------KEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD----td~~r~~--------~~~~~~i~~dl~wLGi~~d 85 (736)
.| ++|.| ||.|||||+++++.++.+++ .|++++++|.| |+..+.. ..+..+|..+|.|+|++|+
T Consensus 41 ~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 41 KLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp EEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred EEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 57 99988 79999999999999999998 79999999999 7522211 1244778888999999998
Q ss_pred CCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCce
Q psy9410 86 KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAH 165 (736)
Q Consensus 86 ~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~ 165 (736)
. ..+++||+++. +.+++..++ .|.|+||..++...... + .
T Consensus 118 k--~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~~------------------------~-~-------- 157 (394)
T 2dlc_X 118 K--LKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGAD------------------------V-V-------- 157 (394)
T ss_dssp T--CEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTTT------------------------T-S--------
T ss_pred H--cEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccHh------------------------h-h--------
Confidence 6 24789999863 234444444 68899998887644210 0 0
Q ss_pred EEEEEeeccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccC
Q psy9410 166 VLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT 245 (736)
Q Consensus 166 ~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~ 245 (736)
| . .+-+ +.+ .-+|-.-.+.|..+++++|+++|.|...|......+.+.+|+
T Consensus 158 --r--------~---~~~~---~~g------------~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~- 208 (394)
T 2dlc_X 158 --K--------Q---VANP---LLS------------GLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY- 208 (394)
T ss_dssp --C--------C---CSSC---CTH------------HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC-
T ss_pred --c--------c---cCCc---cce------------eeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCC-
Confidence 0 0 0000 011 244544556677789999999999999999999999999997
Q ss_pred CcCCCCCCceEEEEee-ecC-Ceecchhhhh
Q psy9410 246 NFIKRPFPKQYEFSRL-NLT-HTITSKRKLL 274 (736)
Q Consensus 246 ~~~~~~~p~~~~f~~l-~~~-g~klSKr~~~ 274 (736)
..|..++...| .++ |+|||||.++
T Consensus 209 -----~~p~~l~~pll~gl~~G~KMSKS~~n 234 (394)
T 2dlc_X 209 -----KKRAHLMNPMVPGLAQGGKMSASDPN 234 (394)
T ss_dssp -----CCCEEEEECCCCCCC----------C
T ss_pred -----CCCEEEecccccCCCCCCcCCCCCCC
Confidence 55643332222 357 8999999864
No 31
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.17 E-value=2.6e-11 Score=144.38 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=77.2
Q ss_pred HHHHHcCcccCccCCCChhHHHHHHHHhcCcCCc-------------cCccc----cCCCCCcccceeccccccCcchhH
Q psy9410 553 AEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII-------------PLNTI----YGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 553 a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~-------------~~~~~----~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
...+++|+.+|..|+.++.|.|+.++..+|.... ++... .......+.+.+|.++||+||+|+
T Consensus 109 e~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~~~~~~~p~i~~d~~~CI~C~~Cv 188 (783)
T 3i9v_3 109 EFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKRCV 188 (783)
T ss_dssp HHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCCCSEEEETTEEECTTTCCCCCHHH
T ss_pred HHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCCcccCCCccEEEchhhCCCccHHH
Confidence 4456799999999999999999999999998321 11110 001122457888999999999999
Q ss_pred hhC----cccccccccccc-eeec----ccCccCccchhhcCccCceeecccC
Q psy9410 616 QSC----PVDAIIGAAKHM-HTIF----SKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 616 ~~C----P~~ai~~~~~~~-~~~~----~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
++| |.++|.+...+. ..+. ...|++||.|+++||++||+..+..
T Consensus 189 ~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~~ 241 (783)
T 3i9v_3 189 RYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTAR 241 (783)
T ss_dssp HHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGGT
T ss_pred HHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceeccccc
Confidence 999 556665433221 1122 2379999999999999999987653
No 32
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.17 E-value=6.8e-12 Score=134.11 Aligned_cols=87 Identities=24% Similarity=0.587 Sum_probs=70.9
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|+ .+||+++.. .....+.+.+|.++|++|+.|+
T Consensus 146 ~~~~~C~~C~~~~Cv-------------~~CP~gAi~---------------------~~~~~g~v~id~~kCigCg~Cv 191 (352)
T 2ivf_B 146 YLARMCNHCTNPACL-------------AACPTGAIY---------------------KREDNGIVLVDQERCKGHRHCV 191 (352)
T ss_dssp EEEECCCCCSSCHHH-------------HHCTTCCEE---------------------ECTTTCCEEECTTTCCCCCHHH
T ss_pred ECCCCCcCcCCcccc-------------ccCCCCcee---------------------ecCCCCeEEechhhcCCchHHH
Confidence 566899999999999 899998743 0112346788999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc---------chhhcCccCceeecccC
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 659 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~~~ 659 (736)
.+||++||.+.... ....+|++|+ .|+.+||++||.+.+..
T Consensus 192 ~aCP~~Ai~~~~~~---~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~ 241 (352)
T 2ivf_B 192 EACPYKAIYFNPVS---QTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLD 241 (352)
T ss_dssp HHCTTCCEEEETTT---TEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETT
T ss_pred hhcCccceeccccc---ccccccCCCcchhhcCCCChHHHhcCccceeccccc
Confidence 99999999876432 3457899996 99999999999998754
No 33
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=99.16 E-value=1.2e-11 Score=122.15 Aligned_cols=85 Identities=31% Similarity=0.743 Sum_probs=69.9
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.|.|+ .+||+++.. ....+.+.+|.++|++|+.|+
T Consensus 53 ~~~~~C~~C~~p~C~-------------~~CP~gAi~----------------------~~~~g~~~id~~~CigC~~C~ 97 (195)
T 2vpz_B 53 FRPEQCLHCENPPCV-------------PVCPTGASY----------------------QTKDGLVLVDPKKCIACGACI 97 (195)
T ss_dssp EEEEECCCCSSCTTT-------------TTCSSSCEE----------------------ECTTSCEEECTTTCCCCCHHH
T ss_pred ECcccCcCccCcHHH-------------HhcCCCcee----------------------cccccceeecCCCCCCcChhH
Confidence 556899999999998 899998743 011245788999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc---------chhhcCccCceeecccC
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 659 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~~~ 659 (736)
.+||++||.+..... ..+|++|+ .|+.+||++||.+.+..
T Consensus 98 ~~CP~~Ai~~~~~~~----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 98 AACPYDARYLHPAGY----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp HHCTTCCCEECTTSS----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred hhCCCCCeEECCCCC----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 999999998765432 57899999 69999999999997653
No 34
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=99.15 E-value=9.8e-12 Score=129.13 Aligned_cols=85 Identities=16% Similarity=0.368 Sum_probs=69.6
Q ss_pred ccCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 535 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 535 g~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
-|.+..|.+|+.|+|+ .+||+ +.. ....+.+.+|.++|++|+.|
T Consensus 62 ~~~~~~C~~C~~p~C~-------------~~CP~-Ai~----------------------~~~~g~v~id~~~CigC~~C 105 (274)
T 1ti6_B 62 NYRPTPCMHCENAPCV-------------AKGNG-AVY----------------------QREDGIVLIDPEKAKGKKEL 105 (274)
T ss_dssp EEEEECCCCCTTCHHH-------------HHTTT-SEE----------------------ECTTSCEEECTTTTTTCGGG
T ss_pred eEcCCcCCCCCChHHH-------------hhChH-Hhh----------------------hccCCcEEechhhccchHHH
Confidence 3567899999999998 88998 642 01234578999999999999
Q ss_pred HhhCcccccccccccceeecccCccCc----------c---chhhcCccCceeeccc
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGC----------D---LCIKKCPVNCISMIEV 658 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~C----------g---~Cv~~CP~~Ai~~~~~ 658 (736)
+.+||++||.++... ....+|++| | .|+++||++||.+.+.
T Consensus 106 ~~~CP~~Ai~~~~~~---~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~ 159 (274)
T 1ti6_B 106 LDTCPYGVMYWNEEE---NVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKT 159 (274)
T ss_dssp GGGCSSCCCEEETTT---TEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEE
T ss_pred HhhCccCCeEEEccc---CccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCC
Confidence 999999999876433 235789999 8 9999999999999765
No 35
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.13 E-value=2.7e-11 Score=139.02 Aligned_cols=103 Identities=19% Similarity=0.366 Sum_probs=81.3
Q ss_pred HHHHcCcccCccCCCChhHHHHHHHHhcCcCC-ccC-cc---ccCCCCCcccceeccccccCcchhHhhCcc----cccc
Q psy9410 554 EAIANKKANYNQCPTGGRKGIIKLAKYLNKPI-IPL-NT---IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAII 624 (736)
Q Consensus 554 ~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~-~~~-~~---~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~----~ai~ 624 (736)
..+++|+.+|..|..++.|.++.++..+|+.. ..+ .. .. .+...+.+.+|.++|++||.|+++||. ++|.
T Consensus 89 lll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~~~~~~~-~~~~~~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~ 167 (574)
T 3c8y_A 89 QLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEY-VDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMK 167 (574)
T ss_dssp HHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGG-EECCSSSEEEEGGGCCCCCHHHHHHHHHHSCCCSE
T ss_pred HHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCCCccccc-cccCCCcceeCcccCcCCCCccchhCchhcCCcee
Confidence 35667888889999999999999999999866 444 21 11 344556789999999999999999998 8887
Q ss_pred ccccc---------ceeecccCccCccchhhcCccCceeecc
Q psy9410 625 GAAKH---------MHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 625 ~~~~~---------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
+...+ ...++...|++||.|+.+||++||.+..
T Consensus 168 ~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 168 FLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp EEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred eccCCccceecccccceechhhCCcchhHHHhhccCCccccc
Confidence 65432 1345678999999999999999998864
No 36
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.4e-10 Score=123.58 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=126.9
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC-------CCcccccHHHHHHHHHHHHHcCCCCCCCC
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD-------TNPLKENKEYVNSIIKTIKWLNFNWDKVK 88 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD-------td~~r~~~~~~~~i~~dl~wLGi~~d~gp 88 (736)
+-.| +-|. |||.|||||+ .++.++...+..|+++++.|.| +.......++...+..++.++|++|+.
T Consensus 32 ~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k-- 106 (323)
T 2cyb_A 32 KPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESR-- 106 (323)
T ss_dssp CCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTT--
T ss_pred CCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccc--
Confidence 3356 7775 6799999997 6788999888889999999966 323345678889999999999999986
Q ss_pred CccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceEEE
Q psy9410 89 KRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLR 168 (736)
Q Consensus 89 ~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~~R 168 (736)
..+.+||+.... .++++. ...|.|.|+..++....... +.
T Consensus 107 ~~i~~qS~~~~~-~~~~~~----~~~l~~~~t~~~l~~~~~~~--------------------------~~--------- 146 (323)
T 2cyb_A 107 AKFVLGSEYQLS-RDYVLD----VLKMARITTLNRARRSMDEV--------------------------SR--------- 146 (323)
T ss_dssp CEEEEGGGTTTS-HHHHHH----HHHHHHHSBHHHHHHHTTTT--------------------------CS---------
T ss_pred eEEEEcchhccc-hHHHHH----HHHHhCccCHHHHhccchhh--------------------------cc---------
Confidence 126889998632 122222 23367888888776543100 00
Q ss_pred EEeeccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCCcC
Q psy9410 169 VKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFI 248 (736)
Q Consensus 169 ~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~ 248 (736)
. ..+ + +.+ .-+|-+..+.|+...+++|++.|.|...|......+.+.++.
T Consensus 147 -----~-----~~~-~---~~g------------~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~---- 196 (323)
T 2cyb_A 147 -----R-----KED-P---MVS------------QMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY---- 196 (323)
T ss_dssp -----C-----SSS-C---BTH------------HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC----
T ss_pred -----c-----cCC-C---Cch------------hhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCC----
Confidence 0 000 0 111 356777778888899999999999999899999999999886
Q ss_pred CCCCCceEEEEee-ecCCeecchhhhh
Q psy9410 249 KRPFPKQYEFSRL-NLTHTITSKRKLL 274 (736)
Q Consensus 249 ~~~~p~~~~f~~l-~~~g~klSKr~~~ 274 (736)
..|..+....| .++|+|||||.++
T Consensus 197 --~~p~~l~~pll~~l~G~KMSKS~~n 221 (323)
T 2cyb_A 197 --SSPVCLHTPILVGLDGQKMSSSKGN 221 (323)
T ss_dssp --CCCEEEEECCCBCTTSSBCCTTTTC
T ss_pred --CCceEEecCcccCCCCCcccCCcCc
Confidence 45644433333 4589999999643
No 37
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=99.08 E-value=2.6e-11 Score=127.58 Aligned_cols=85 Identities=28% Similarity=0.672 Sum_probs=68.4
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCC-ChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchh
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPT-GGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLC 614 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~-~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C 614 (736)
+.+..|.+|+.|.|+ .+||+ ++.. ....+.+.+|.++|++||.|
T Consensus 95 ~~~~~C~~C~~~~C~-------------~~CP~~gAi~----------------------~~~~g~v~id~~~CigCg~C 139 (294)
T 1kqf_B 95 IRKDGCMHCEDPGCL-------------KACPSAGAII----------------------QYANGIVDFQSENCIGCGYC 139 (294)
T ss_dssp EEEESCCCBSSCHHH-------------HHCCSTTSEE----------------------EETTSCEEECGGGCCCCCHH
T ss_pred ECcccCCCcCChhhh-------------hhCCccCccc----------------------cccccceEeCcccCCCcchh
Confidence 456789999999998 89998 6632 01234578899999999999
Q ss_pred HhhCcccccccccccceeecccCccCcc---------chhhcCccCceeeccc
Q psy9410 615 IQSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 615 ~~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~~ 658 (736)
+.+||+++|.++.... ...+|+.|+ .|+.+||++||.+.+.
T Consensus 140 ~~~CP~~ai~~~~~~~---~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~ 189 (294)
T 1kqf_B 140 IAGCPFNIPRLNKEDN---RVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTK 189 (294)
T ss_dssp HHHCTTCCCEEETTTT---EEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEH
T ss_pred hhcCCCCCcEecCCCC---CeeeCCCccchhhcCccHHHHHhCCcCcEEEecH
Confidence 9999999998754332 235899998 9999999999998754
No 38
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=99.06 E-value=4.9e-11 Score=95.45 Aligned_cols=57 Identities=19% Similarity=0.459 Sum_probs=46.3
Q ss_pred cceeccccccCcchhHhhCcccccccccc-cce-eec--ccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAK-HMH-TIF--SKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~-~~~-~~~--~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.+|.++|++||.|+.+|| +++.++.+ +.. ..+ ...|++|+.|+.+||++||++.+
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP-~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAP-GAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCT-TTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEEccccCCCchHHHHhCC-ccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 35789999999999999999 88876543 322 233 57899999999999999998753
No 39
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=99.05 E-value=3.5e-11 Score=120.70 Aligned_cols=86 Identities=19% Similarity=0.458 Sum_probs=69.1
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCC---CChhHHHHHHHHhcCcCCccCccccCCCCCcccceecccccc--C
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCP---TGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCI--G 610 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~---~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci--~ 610 (736)
|.+..|.+|+.|.|+ .+|| +++.. .....+.+.+|.++|+ +
T Consensus 67 ~~~~~C~~C~~p~C~-------------~~CP~~~~gAi~---------------------~~~~~g~v~id~~~C~~~~ 112 (214)
T 1h0h_B 67 FFPDQCRHCIAPPCK-------------ATADMEDESAII---------------------HDDATGCVLFTPKTKDLED 112 (214)
T ss_dssp EEEECCCCCSSCHHH-------------HHHTTTCTTSEE---------------------ECTTTCCEEECGGGGGCSC
T ss_pred ecCCcCcCcCCchhh-------------ccCCccccccEE---------------------ecCCCCeEEEeHHHCcccc
Confidence 567899999999999 8899 66532 0111345789999999 9
Q ss_pred cchhHhhCcccccccccccceeecccCccCc------c---chhhcCccCceeeccc
Q psy9410 611 CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------D---LCIKKCPVNCISMIEV 658 (736)
Q Consensus 611 Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~C------g---~Cv~~CP~~Ai~~~~~ 658 (736)
|+.|+.+||++||.+.... ....+|++| | .|+.+||++||++.+.
T Consensus 113 C~~C~~~CP~~Ai~~~~~~---~~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~ 166 (214)
T 1h0h_B 113 YESVISACPYDVPRKVAES---NQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDL 166 (214)
T ss_dssp HHHHHHHCTTCCCEECTTS---SCEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEH
T ss_pred ccHHHHhcCCCCeEecCCC---cccCcCCCCcchhhcCCChhHHHhcCcccEEEccH
Confidence 9999999999999876432 245789999 5 9999999999998764
No 40
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=99.04 E-value=9.4e-11 Score=98.95 Aligned_cols=56 Identities=32% Similarity=0.734 Sum_probs=49.0
Q ss_pred eeccccccCcchhHhhCcccccccccccceeecccCccCcc------chhhcCccCceeeccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 658 (736)
.+|.++|++|+.|+.+||+++|.++.. ...++...|++|+ .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGDE-TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECSS-SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCccchHHHCChhheEcCCC-ceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 468899999999999999999987543 4567888999999 9999999999998754
No 41
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.03 E-value=5.3e-10 Score=121.13 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=114.5
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC----CC-ccc------ccHHHHHH-HHHHHHHcCCC
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD----TN-PLK------ENKEYVNS-IIKTIKWLNFN 83 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD----td-~~r------~~~~~~~~-i~~dl~wLGi~ 83 (736)
+-.| +.|. |||.|||||+.+++.++.+.+ .|+++++.|.| |+ +.. ....+.++ +...|.|+|++
T Consensus 35 ~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gld 111 (372)
T 1n3l_A 35 ELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVP 111 (372)
T ss_dssp CCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4467 9999 579999999999999999887 78999999999 74 321 23445555 55567999999
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCC
Q psy9410 84 WDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDG 163 (736)
Q Consensus 84 ~d~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~ 163 (736)
|++ ..+++||+.. ...+++..++. |.|++|..+++..... +.
T Consensus 112 p~k--~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~~------------------------v~------- 153 (372)
T 1n3l_A 112 LEK--LKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGAE------------------------VV------- 153 (372)
T ss_dssp CTT--EEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTTT------------------------TS-------
T ss_pred hhh--cEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchhh------------------------hh-------
Confidence 985 2478999983 23345555554 6777887776542100 00
Q ss_pred ceEEEEEeeccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcc
Q psy9410 164 AHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKID 243 (736)
Q Consensus 164 ~~~~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~ 243 (736)
+ ... +. +.+ .-+|-.-.+.|-.+.+.+|++.|.|...|.....-+.+.+|
T Consensus 154 ----~------~~~----~~----~~g------------~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~ 203 (372)
T 1n3l_A 154 ----K------QVE----HP----LLS------------GLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALG 203 (372)
T ss_dssp ----C------CCS----SC----CHH------------HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGT
T ss_pred ----c------ccC----CC----cce------------eeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcC
Confidence 0 000 00 001 13333334445556789999999999999999999999998
Q ss_pred cCCcCCCCCCceEEEEee-ecCCeecchhhhh
Q psy9410 244 KTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 274 (736)
Q Consensus 244 ~~~~~~~~~p~~~~f~~l-~~~g~klSKr~~~ 274 (736)
+ ..|..+....| .++|+|||||.++
T Consensus 204 ~------~~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 204 Y------SKRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp C------CCCEEEEECCCCCSSCC-------C
T ss_pred C------CCCEEEecCccCCCCcccccCCCCC
Confidence 7 55644332222 4579999999865
No 42
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=99.02 E-value=1.9e-10 Score=90.10 Aligned_cols=54 Identities=26% Similarity=0.595 Sum_probs=44.2
Q ss_pred ceeccccccCcchhHhhCccccccc-cccccee--ecccCccCccchhhcCccCceee
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIG-AAKHMHT--IFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~-~~~~~~~--~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
+.+|.++|++||.|+.+|| +++.+ ..++... ++...|++||.|+.+||++||++
T Consensus 2 i~i~~~~C~~C~~C~~~Cp-~~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCP-EVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp EEESSCCCSSCCGGGGTST-TTEEEEECSSCEEESCTTCCCGGGGTGGGGSTTCCEEE
T ss_pred eEEChhhCcChhHHHHHCC-HHheecCCCCcEEEecChhhhhHHHHHHHhCCHhhEEc
Confidence 4678999999999999999 57766 3333333 36788999999999999999986
No 43
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=99.02 E-value=9.5e-11 Score=103.35 Aligned_cols=58 Identities=24% Similarity=0.523 Sum_probs=47.7
Q ss_pred ccceeccccccCcchhHhhCccccccccccc--------ceeecccCccCccchhhcCccCceeec
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKH--------MHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~--------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..+.+|.++|++||.|+.+||.+++.+.... ...++...|++||.|+.+||++||++.
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred ceEEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEec
Confidence 3578899999999999999999998754321 123466789999999999999999875
No 44
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=99.01 E-value=1.8e-10 Score=96.20 Aligned_cols=56 Identities=32% Similarity=0.702 Sum_probs=48.5
Q ss_pred eeccccccC--cchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 602 IIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~--Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+|.++|++ ||.|+++||.+||.+.. +...++...|++||.|+.+||++||.+...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~-~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGG-DQFYIHPEECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS-SSEEECTTTCCCCCTHHHHCTTCCEEEGGG
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCC-CEEEECcccCCcHhHHHHhCCccceEeccc
Confidence 468899999 99999999999998764 335678889999999999999999998654
No 45
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=99.00 E-value=2.1e-10 Score=88.84 Aligned_cols=50 Identities=32% Similarity=0.743 Sum_probs=44.2
Q ss_pred cccccCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceee
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
.++|++||.|+++||.++|..+.+ ...++...|++||.|+.+||++||++
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGDD-RYVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCSS-SCEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred cccCcChhhHHHHCCccccCcCCC-EEEeccccCcChhChHHHccccceec
Confidence 688999999999999999987643 34577889999999999999999976
No 46
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=99.00 E-value=2.3e-10 Score=101.54 Aligned_cols=56 Identities=29% Similarity=0.756 Sum_probs=49.0
Q ss_pred eeccccccCcc--hhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 602 IIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+|.++|++|+ .|+.+||+++|..+.+ ...++...|++||.|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~-~~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGPN-FLVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSS-CEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCccCcHHHHHcCccceEcCCC-cEEECcccCCChhhhHHhCCChhhhcccc
Confidence 46889999999 9999999999987644 35678889999999999999999998764
No 47
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=98.99 E-value=1.5e-10 Score=97.19 Aligned_cols=56 Identities=27% Similarity=0.691 Sum_probs=48.2
Q ss_pred eeccccccCcchhHhhCcccccccccccceeecccCccCcc------chhhcCccCceeeccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 658 (736)
.++.++|++||.|+.+||++||.++.+ ...++...|++|+ .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDP-IYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPD 63 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSS-SCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGG
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCC-eeEEcchhCcCCCCcCCccHHHHhcCcccEEecCC
Confidence 357889999999999999999987643 3467788999999 9999999999998654
No 48
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=98.99 E-value=1.5e-10 Score=91.11 Aligned_cols=55 Identities=20% Similarity=0.446 Sum_probs=44.3
Q ss_pred ceeccccccCcchhHhhCcccccccccccceeec--ccCccCccchhhcCccCceeec
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIF--SKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~--~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
+.+|.++|++||.|+.+||. ++..+.++...+. ...|++||.|+.+||++||++.
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~-~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPD-VFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTT-TBCCCSSSCCCBSCSSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEEchhhCCCChHHHHhCcH-HHeECCCCCEeecCchhhHHHHHHHHHhCCHhHEEEe
Confidence 56899999999999999996 6665443333332 6789999999999999999874
No 49
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=98.99 E-value=1.5e-10 Score=90.61 Aligned_cols=53 Identities=17% Similarity=0.461 Sum_probs=43.3
Q ss_pred ceeccccccCcchhHhhCcccccccccccc-eeec--ccCccCccchhhcCccCceee
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHM-HTIF--SKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~-~~~~--~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
+.+| ++|++||.|+++||. ++.++.++. ..++ ...|++||.|+.+||++||++
T Consensus 2 v~id-~~C~~C~~C~~~CP~-~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPD-VFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTT-TEEECSSSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred cEEC-CcCccchHHHHhCCc-cEEECCCCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 4678 999999999999998 666543332 4455 678999999999999999976
No 50
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=98.98 E-value=2.1e-10 Score=96.77 Aligned_cols=56 Identities=34% Similarity=0.824 Sum_probs=48.2
Q ss_pred eeccccccCcchhHhhCcccccccccccceeecccCccCcc------chhhcCccCceeeccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 658 (736)
.++.++|++||.|+.+||++||.++.. ...++...|++|| .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQGEE-IYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDA 63 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEECSS-SEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTT
T ss_pred ceeCCCCCChhhHHHHCChhccCCCCC-eEEEEchhCccCCCcCCCCHhHhhCCcccEEccCC
Confidence 357789999999999999999987643 3567888999999 9999999999998654
No 51
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=98.98 E-value=2e-10 Score=95.63 Aligned_cols=55 Identities=31% Similarity=0.683 Sum_probs=47.8
Q ss_pred eeccccccC--cchhHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 602 IIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 602 ~~d~~~Ci~--Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.++.++|++ ||.|+++||.+||.+.. +...++...|++||.|+.+||++||.+..
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~-~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGE-DQYYIDPDVCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECS-SSEEECTTTCCSCCSHHHHSGGGSSEETT
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCC-CcEEECcccCcCccCCHhhcCccceEecC
Confidence 467899999 89999999999998754 34567888999999999999999999764
No 52
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.98 E-value=1.2e-10 Score=129.57 Aligned_cols=85 Identities=26% Similarity=0.532 Sum_probs=68.6
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhH
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 615 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~ 615 (736)
+.+..|.+|+.+.|. .+||.++.. .....+.+.+|.++|++|+.|+
T Consensus 179 ~~~~~C~~C~~~~Cv-------------~aCP~gAI~---------------------~~~~~g~v~id~~kCigCg~Cv 224 (512)
T 1q16_B 179 YLPRLCEHCLNPACV-------------ATCPSGAIY---------------------KREEDGIVLIDQDKCRGWRMCI 224 (512)
T ss_dssp EEEECCCCCSSCHHH-------------HTCTTCCEE---------------------EETTTCCEEECTTTCCCCCCHH
T ss_pred ecCccCcCCCCchhh-------------hhCCcCcEE---------------------eecCCCeEEECHHHCCCchHHH
Confidence 456799999998998 899987642 0012345788999999999999
Q ss_pred hhCcccccccccccceeecccCccCcc---------chhhcCccCceeecc
Q psy9410 616 QSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIE 657 (736)
Q Consensus 616 ~~CP~~ai~~~~~~~~~~~~~~C~~Cg---------~Cv~~CP~~Ai~~~~ 657 (736)
.+||++||.+..... ...+|++|+ .|+.+||++||.+..
T Consensus 225 ~~CP~~AI~~~~~~~---~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 225 TGCPYKKIYFNWKSG---KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp HHCTTCCEEEETTTT---EEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred hhCCccceecccCCC---CcccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 999999998765432 357899999 999999999998874
No 53
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=98.98 E-value=1.4e-10 Score=97.52 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=46.4
Q ss_pred cceeccccccCcchhHhhCcccccccccccceeec-----------ccCccCccchhhcCccCceeeccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIF-----------SKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~-----------~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+.+|.++|++||.|+.+|| +++.++.++...+. ...|.+|+.|+.+||++||++...
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~~~~~~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTEEECTTSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccChhhHhCc-hheeeCCCCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 46789999999999999999 77766433332222 357999999999999999998764
No 54
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=98.97 E-value=2.1e-10 Score=96.00 Aligned_cols=59 Identities=27% Similarity=0.674 Sum_probs=46.9
Q ss_pred ceeccccccCcchhHhhCccccccccc-cc---c---eeecccCccCccchhhcCccCceeecccC
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA-KH---M---HTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~-~~---~---~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.++.++|++||.|+.+||.+++.... ++ . ...+...|++||.|+.+||++||++....
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 68 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEEC
T ss_pred CcccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeeec
Confidence 456889999999999999999997653 11 1 12345789999999999999999986553
No 55
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=98.93 E-value=3.4e-10 Score=96.21 Aligned_cols=56 Identities=36% Similarity=0.739 Sum_probs=48.3
Q ss_pred eeccccccCcchhHhhCcccccccccccceeecccCccCcc------chhhcCcc-Cceeeccc
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPV-NCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg------~Cv~~CP~-~Ai~~~~~ 658 (736)
.++.++|++||.|+.+||++||.++.. ...++...|++|| .|+.+||+ +||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISMGDH-IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEECCSS-SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred EEeCCcCcChhHHHHHCchhccCcCCC-ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 467899999999999999999987643 3457788999999 99999999 99998654
No 56
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.91 E-value=4.8e-10 Score=107.70 Aligned_cols=59 Identities=31% Similarity=0.656 Sum_probs=50.5
Q ss_pred ceeccccccCcc-----hhHhhCcccccccccccc--eeecccCccCccchhhcCccCceeecccC
Q psy9410 601 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKHM--HTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 601 ~~~d~~~Ci~Cg-----~C~~~CP~~ai~~~~~~~--~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+|.++|++|+ .|+.+||++||.++.++. ..++...|++||.|+.+||++||.+....
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 67 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAITARPYA 67 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEECCCT
T ss_pred CEEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCcccCcccChHhHhCCccceEEeccc
Confidence 468999999999 999999999998765442 34567899999999999999999987654
No 57
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=98.91 E-value=7.8e-10 Score=97.88 Aligned_cols=56 Identities=32% Similarity=0.722 Sum_probs=48.6
Q ss_pred eeccccccCc--chhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 602 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 602 ~~d~~~Ci~C--g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.++.++|++| |.|+.+||.++|.+... ...++...|++||.|+.+||++||.+...
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~-~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 59 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGAR-MLYIHPDECVDCGACEPVCPVEAIYYEDD 59 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSS-CEEECTTTCCCCCCSGGGCTTCCEEEGGG
T ss_pred EEecccCCCCCcChhhhhcCccccCcCCC-cEEEeCCcCcchhhHHHhCCccCEEecCC
Confidence 5788999988 99999999999987643 35678889999999999999999998754
No 58
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=98.90 E-value=5.1e-10 Score=109.22 Aligned_cols=56 Identities=34% Similarity=0.648 Sum_probs=45.7
Q ss_pred ccccccCcchhHhhCccccccccccc---------------ceeecccCccCccchhhcCccCceeecccC
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGAAKH---------------MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~~~~---------------~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
|.++|++|+.|+.+||++++.+.... ...++...|++||.|+.+||++||.+....
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~ 119 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDF 119 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECSCC
T ss_pred CCccCcccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecCcc
Confidence 56799999999999999999754321 224567899999999999999999997643
No 59
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=98.88 E-value=7.3e-10 Score=104.64 Aligned_cols=59 Identities=27% Similarity=0.617 Sum_probs=50.1
Q ss_pred ceeccccccCcc-----hhHhhCcccccccccccc--eeecccCccCccchhhcCccCceeecccC
Q psy9410 601 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKHM--HTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 601 ~~~d~~~Ci~Cg-----~C~~~CP~~ai~~~~~~~--~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
+.+|.++|++|+ .|+.+||.+||.++..+. ..++...|++||.|+.+||++||.+....
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~ 68 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGYV 68 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECCCT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecCcc
Confidence 468899999999 999999999998765432 35677899999999999999999987653
No 60
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=98.84 E-value=1.4e-09 Score=120.00 Aligned_cols=61 Identities=38% Similarity=0.828 Sum_probs=51.6
Q ss_pred CCCcc-cceeccccccCcchhHhhCcccccccccccceee-cccCccCccchhhcCccCceee
Q psy9410 595 EKSRC-CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 595 ~~~~~-~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~-~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
+.+.+ .+.+|.++|++||.|+++||.+||....+....+ +...|++||.|+.+||++||.+
T Consensus 21 d~~~~m~i~~d~~kCi~Cg~C~~~CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 21 DPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp CGGGCCSEEECTTTCCCCCHHHHHCTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCCEEE
T ss_pred CCCCCceEEECcccCCCccHHHHhcCcCceecccccceeecChhhCCchhhHHHhhCcCCccc
Confidence 33445 7899999999999999999999998765433345 7889999999999999999988
No 61
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=98.81 E-value=9.4e-10 Score=88.21 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=44.0
Q ss_pred cceeccccccCcchhHhhCcccccccccccce-eec---cc--CccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMH-TIF---SK--LCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-~~~---~~--~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.+|.++|++||.|+.+||. ++.++.++.. .++ .. .|.+|+.|+.+||++||++.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~-~~~~~~~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPD-VFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTT-TEEECTTSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECcccCcCchHHHHhCCc-eEEECCCCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 367899999999999999995 8876533332 223 23 478999999999999998753
No 62
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.64 E-value=1.7e-08 Score=124.43 Aligned_cols=61 Identities=26% Similarity=0.564 Sum_probs=49.5
Q ss_pred ccceeccccccCcchhHhhCcccccccc---cc--------------------c---ceeecccCccCccchhhcCcc--
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGA---AK--------------------H---MHTIFSKLCTGCDLCIKKCPV-- 650 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~---~~--------------------~---~~~~~~~~C~~Cg~Cv~~CP~-- 650 (736)
..+.+|.++||+||.|+.+||.++|... .. + ...++..+|++||.|+.+||+
T Consensus 679 ~~p~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~ 758 (1231)
T 2c42_A 679 NVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKE 758 (1231)
T ss_dssp EEEEECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSS
T ss_pred cceEEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCc
Confidence 3468899999999999999999998642 10 0 134677899999999999999
Q ss_pred CceeecccC
Q psy9410 651 NCISMIEVT 659 (736)
Q Consensus 651 ~Ai~~~~~~ 659 (736)
+||.+....
T Consensus 759 ~AI~~~~~~ 767 (1231)
T 2c42_A 759 KALVMQPLD 767 (1231)
T ss_dssp CSEEEEEGG
T ss_pred cCeEEecch
Confidence 999998754
No 63
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=98.54 E-value=3e-08 Score=105.90 Aligned_cols=60 Identities=25% Similarity=0.551 Sum_probs=51.7
Q ss_pred ccceeccccccCcc--hhHhhCccccccccc-ccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCT--LCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.++.+.|++|+ .|+.+||++||.... .+...++..+|++|+.|+.+||++||.+...
T Consensus 142 ~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 142 PFFFYLARMCNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp EECEEEEECCCCCSSCHHHHHCTTCCEEECTTTCCEEECTTTCCCCCHHHHHCTTCCEEEETT
T ss_pred eEEEECCCCCcCcCCccccccCCCCceeecCCCCeEEechhhcCCchHHHhhcCccceecccc
Confidence 45678899999999 999999999998653 4556778899999999999999999998653
No 64
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=98.52 E-value=3.3e-08 Score=97.48 Aligned_cols=59 Identities=22% Similarity=0.613 Sum_probs=51.7
Q ss_pred cceeccccccCcc--hhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 600 CAIIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+.++...|++|+ .|+.+||++||.....+...++...|++||.|+.+||++||.+...
T Consensus 50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~~~g~~~id~~~CigC~~C~~~CP~~Ai~~~~~ 110 (195)
T 2vpz_B 50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPA 110 (195)
T ss_dssp EEEEEEEECCCCSSCTTTTTCSSSCEEECTTSCEEECTTTCCCCCHHHHHCTTCCCEECTT
T ss_pred eEEECcccCcCccCcHHHHhcCCCceecccccceeecCCCCCCcChhHhhCCCCCeEECCC
Confidence 4678899999999 7999999999987655566788899999999999999999998654
No 65
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.41 E-value=1e-07 Score=105.94 Aligned_cols=60 Identities=25% Similarity=0.507 Sum_probs=51.4
Q ss_pred ccceeccccccCcc--hhHhhCcccccccc-cccceeecccCccCccchhhcCccCceeeccc
Q psy9410 599 CCAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg--~C~~~CP~~ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
..+.++.+.|++|+ .|+.+||++||... .++...++..+|++||.|+.+||++||.+...
T Consensus 175 ~~i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~~ 237 (512)
T 1q16_B 175 TFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 237 (512)
T ss_dssp CCCEEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEETT
T ss_pred ceEEecCccCcCCCCchhhhhCCcCcEEeecCCCeEEECHHHCCCchHHHhhCCccceecccC
Confidence 45678999999999 79999999999864 34456788899999999999999999998643
No 66
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.33 E-value=1.6e-07 Score=115.13 Aligned_cols=61 Identities=38% Similarity=0.873 Sum_probs=50.8
Q ss_pred cccceeccccccCcchhHhhCcc---ccccccccc-ceeecccCccCccchhhcCcc-CceeecccC
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPV---DAIIGAAKH-MHTIFSKLCTGCDLCIKKCPV-NCISMIEVT 659 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~---~ai~~~~~~-~~~~~~~~C~~Cg~Cv~~CP~-~Ai~~~~~~ 659 (736)
...+.+|.++|++||.|+.+||. ++|.++... ...++ ..|++||.|+.+||+ +||++....
T Consensus 943 ~~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 943 QVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp CEEEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEEC-TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred cceEEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEeC-ccCCChhHHHhhCCCCCCEEEecCc
Confidence 45678999999999999999996 899876543 23455 899999999999999 999997654
No 67
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=98.32 E-value=2.3e-07 Score=97.34 Aligned_cols=58 Identities=33% Similarity=0.756 Sum_probs=50.3
Q ss_pred cceeccccccCcc--hhHhhCcc-cccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCT--LCIQSCPV-DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg--~C~~~CP~-~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
...++.+.|++|+ .|+.+||+ +||.....+...++..+|++||.|+.+||++||.+..
T Consensus 92 ~~~~~~~~C~~C~~~~C~~~CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 92 EWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEEEEESCCCBSSCHHHHHCCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTTCCCEEET
T ss_pred eEEECcccCCCcCChhhhhhCCccCccccccccceEeCcccCCCcchhhhcCCCCCcEecC
Confidence 4567889999999 89999999 9998655566677889999999999999999998764
No 68
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=98.26 E-value=4.4e-07 Score=94.06 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=49.5
Q ss_pred cceeccccccCcch--hHhhCcccccccccccceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
...+....|++|+. |+.+||. ||....++...++..+|++|+.|+.+||++||.+..
T Consensus 60 ~~~~~~~~C~~C~~p~C~~~CP~-Ai~~~~~g~v~id~~~CigC~~C~~~CP~~Ai~~~~ 118 (274)
T 1ti6_B 60 DINYRPTPCMHCENAPCVAKGNG-AVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNE 118 (274)
T ss_dssp EEEEEEECCCCCTTCHHHHHTTT-SEEECTTSCEEECTTTTTTCGGGGGGCSSCCCEEET
T ss_pred eeeEcCCcCCCCCChHHHhhChH-HhhhccCCcEEechhhccchHHHHhhCccCCeEEEc
Confidence 35677899999998 9999999 997655566778899999999999999999999864
No 69
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.25 E-value=1.1e-06 Score=105.33 Aligned_cols=94 Identities=21% Similarity=0.246 Sum_probs=70.2
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEe---eCCC-------------cccccHHHHHHHHHHHHHcCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRF---DDTN-------------PLKENKEYVNSIIKTIKWLNF 82 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~---eDtd-------------~~r~~~~~~~~i~~dl~wLGi 82 (736)
+=-+|+|||.|||||+|+.++.+.+||. ..|.-++.. |+.+ +.....++++.|.++|+.||+
T Consensus 38 ~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi 117 (878)
T 2v0c_A 38 LVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGI 117 (878)
T ss_dssp EECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3345999999999999999999999984 235545544 4433 333457888999999999998
Q ss_pred CCC--CCCCccccccccHHHHHHHHHHHHHcCCCcc
Q psy9410 83 NWD--KVKKRIYYASDYFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 83 ~~d--~gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~ 116 (736)
..| . +..+..++|....+....+|.++|++|.
T Consensus 118 ~~Dw~~--~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 118 LYDWDR--EVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp CCCGGG--CCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccCcCC--CeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 766 3 0224456677777888899999999994
No 70
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.22 E-value=1.4e-06 Score=103.85 Aligned_cols=91 Identities=24% Similarity=0.338 Sum_probs=67.9
Q ss_pred ECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEe---eCCC-------------cccccHHHHHHHHHHHHHcCCCC
Q psy9410 23 FAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRF---DDTN-------------PLKENKEYVNSIIKTIKWLNFNW 84 (736)
Q Consensus 23 faP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~---eDtd-------------~~r~~~~~~~~i~~dl~wLGi~~ 84 (736)
=+|+|||.|||||+|++++.+.+||. ..|.-++.. |+.. +.....++++.|.++|+.||+..
T Consensus 60 ~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~ 139 (880)
T 4arc_A 60 MLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGY 139 (880)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 36999999999999999999999984 346555554 3332 33334577899999999999876
Q ss_pred C--CCCCccccc--cccHHHHHHHHHHHHHcCCCccc
Q psy9410 85 D--KVKKRIYYA--SDYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 85 d--~gp~~~~~~--Se~~~~~~~~a~~Li~~g~aY~c 117 (736)
| . .+++ .+|....+....+|.++|++|..
T Consensus 140 Dw~~----~~~T~d~~~~~~v~~~f~~L~ekGliY~~ 172 (880)
T 4arc_A 140 DWSR----ELATCTPEYYRWEQKFFTELYKKGLVYKK 172 (880)
T ss_dssp CGGG----CEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCC----CEEcCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 6 3 3333 45556666777899999999943
No 71
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=98.21 E-value=2.5e-07 Score=100.09 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=47.8
Q ss_pred cceeccccc-cCc--chhHhhCccccccccc-ccceeecccCccCccchhhcCccCceeec
Q psy9410 600 CAIIKENKC-IGC--TLCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 600 ~~~~d~~~C-i~C--g~C~~~CP~~ai~~~~-~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.+.+|.+.| .+| +.|+.+||++||..+. ++...++..+|++||.|+.+||++||...
T Consensus 199 ~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~ 259 (366)
T 3mm5_B 199 PPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDP 259 (366)
T ss_dssp CCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCT
T ss_pred ceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccc
Confidence 456788888 467 9999999999998752 45677889999999999999999998654
No 72
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.13 E-value=3.7e-06 Score=89.71 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=69.6
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC----C----CcccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD----T----NPLKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD----t----d~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
+.+...|||.|||||...++.++...+..|.+.++-|.| | ||+. ..+....+..++.++|++++. ...+
T Consensus 15 v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k--~~if 91 (340)
T 2g36_A 15 ILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEK--SVIF 91 (340)
T ss_dssp EEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTT--SEEE
T ss_pred EEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhH--eEEE
Confidence 556667789999999999888888888888999999988 5 6654 556667777888899999874 1378
Q ss_pred cccccHHHHHHHHHHHHHcCCCcccCCCHHHHH
Q psy9410 93 YASDYFDILYKIAEYLIISGDAYVDSQNTEEIY 125 (736)
Q Consensus 93 ~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~ 125 (736)
+||+..+ +.+++- .+-|.++-.++.
T Consensus 92 ~qS~~~~-~~el~~-------~l~~~~~v~~l~ 116 (340)
T 2g36_A 92 VQSGVKE-HAELAL-------LFSMIVSVSRLE 116 (340)
T ss_dssp EGGGCTH-HHHHHH-------HHHTTSCHHHHH
T ss_pred ECCchHH-HHHHHH-------HHHccCCHHHHH
Confidence 8998754 444332 235667766654
No 73
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=98.12 E-value=2.6e-06 Score=101.86 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=68.3
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHH--hcCCEEEEEeeCCC---c---------------------------------
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAY--KYNGLCNLRFDDTN---P--------------------------------- 62 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar--~~~G~~ilR~eDtd---~--------------------------------- 62 (736)
+-=+|+|||.|||||+++.++.+.+|| ...|.-+++.-.+| .
T Consensus 39 ~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~ 118 (810)
T 1wkb_A 39 TVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWT 118 (810)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHG
T ss_pred EeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHH
Confidence 777899999999999999999999999 45677777753222 1
Q ss_pred ----ccccHHHHHHHHHHHHHcCCCCC--CCCCccccccc----cHHHHHHHHHHHHHcCCCcc
Q psy9410 63 ----LKENKEYVNSIIKTIKWLNFNWD--KVKKRIYYASD----YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 63 ----~r~~~~~~~~i~~dl~wLGi~~d--~gp~~~~~~Se----~~~~~~~~a~~Li~~g~aY~ 116 (736)
.....++.+.|.++|++||+..| . .+++++ |.........+|.++|++|.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~----~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 119 FEDPINIVKYFMKAAKETFIRAGFSVDWSR----EFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHTTCCCCGGG----CCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeEEecCC----ceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 11124556889999999998765 4 555555 33344566689999999994
No 74
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.10 E-value=1.2e-07 Score=96.95 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred HcCcccCccCCCChhHHHHHHHHhcCcCCccCcccc--------CCCCCcccceeccccccCcchhHhhCccccccc---
Q psy9410 557 ANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIY--------GNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIG--- 625 (736)
Q Consensus 557 ~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~--- 625 (736)
.-++.+|..|..+..+.++.+...++.....+.... ...........+.++|++||.|+.+||..++..
T Consensus 89 ~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~ 168 (243)
T 1kf6_B 89 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFI 168 (243)
T ss_dssp EEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHCTTSC
T ss_pred EEEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCCccccccCCHHHHHHhhhhhhccccCccccccCCCcccCCCC
Confidence 345556667777777777777766654322111100 000011124478899999999999999876521
Q ss_pred -------------ccc------ccee----ecccCccCccchhhcCccC
Q psy9410 626 -------------AAK------HMHT----IFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 626 -------------~~~------~~~~----~~~~~C~~Cg~Cv~~CP~~ 651 (736)
+.. .... .....|+.||.|+.+||++
T Consensus 169 gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 169 GPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp CHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTC
T ss_pred CHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCcccCCcchhCCCC
Confidence 100 0001 1346899999999999998
No 75
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=98.07 E-value=1.1e-06 Score=87.75 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=49.5
Q ss_pred cceeccccccCcch--hHhhCc---cccccccc-ccceeecccCcc--CccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCIGCTL--CIQSCP---VDAIIGAA-KHMHTIFSKLCT--GCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~--C~~~CP---~~ai~~~~-~~~~~~~~~~C~--~Cg~Cv~~CP~~Ai~~~~ 657 (736)
...++...|++|+. |+.+|| .+||.... .+...++...|+ +|+.|+.+||++||.+..
T Consensus 64 ~~~~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~ 129 (214)
T 1h0h_B 64 DWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVA 129 (214)
T ss_dssp EEEEEEECCCCCSSCHHHHHHTTTCTTSEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEECT
T ss_pred eeeecCCcCcCcCCchhhccCCccccccEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEecC
Confidence 34667899999996 999999 99998654 455677889999 999999999999999864
No 76
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.07 E-value=6.2e-07 Score=91.31 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=39.2
Q ss_pred ccceeccccccCcchhHhhCcccccccc---------------cccc-------e-----eecccCccCccchhhcCccC
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGA---------------AKHM-------H-----TIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~---------------~~~~-------~-----~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.....+.++||+||.|+.+||..++..+ .+.. . ......|+.||.|+.+||++
T Consensus 140 ~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 140 REKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp HHTTTTTTTCCCCCTTGGGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTC
T ss_pred HHHHhccccccccCCchhhCcCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHHHHhccCCCCcCcccchhhhhcCCC
Confidence 3456688999999999999998654210 0000 0 01456899999999999999
Q ss_pred ce
Q psy9410 652 CI 653 (736)
Q Consensus 652 Ai 653 (736)
+.
T Consensus 220 i~ 221 (238)
T 2wdq_B 220 LN 221 (238)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 77
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=98.06 E-value=1.1e-06 Score=95.63 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=46.8
Q ss_pred cceecccccc---CcchhHhhCccccccccc---c----cceeecccCccCccchhhcCccCceeecc
Q psy9410 600 CAIIKENKCI---GCTLCIQSCPVDAIIGAA---K----HMHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 600 ~~~~d~~~Ci---~Cg~C~~~CP~~ai~~~~---~----~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.+.+|.+.|. .|+.|+.+||++||.... + ....++..+|++||.|+.+||++||....
T Consensus 210 ~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~ 277 (386)
T 3or1_B 210 PPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDGT 277 (386)
T ss_dssp CCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCTT
T ss_pred cceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCCC
Confidence 3567888775 349999999999998742 2 23678899999999999999999987644
No 78
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=97.95 E-value=2.2e-06 Score=88.49 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=41.1
Q ss_pred cCcchhHhhCcccccccccccceeecccCccCccchhhcCccCceeeccc
Q psy9410 609 IGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658 (736)
Q Consensus 609 i~Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 658 (736)
.+||.|+++||.++|.++.......+..+|++||.|+.+|| +||.+...
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~~v~~d~~~C~~C~~C~~vCp-~aI~~~~~ 222 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCN-GSIRISFV 222 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTEEEESCGGGCCCCCHHHHHHT-TSEEEEEE
T ss_pred hhHHHHHHhCcccCeEecCCeeEEeccccCCCchHHHHhCC-CceEEEec
Confidence 89999999999999988654433456689999999999999 99987654
No 79
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.91 E-value=1.6e-05 Score=84.49 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC----CCccc--ccHHHHHHHHHHHHHcCCCCCCCCCccccccccHH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD----TNPLK--ENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD 99 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD----td~~r--~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~ 99 (736)
.|||.|||||...++.+|...+. +.+.++-|.| |++.. ...+....+..++-++|++++. ...++||+..+
T Consensus 9 ~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k--~~if~qS~~~~ 85 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQ--ATLFIQSEVPA 85 (328)
T ss_dssp CCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTT--EEEEEGGGCTH
T ss_pred CCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhh--cEEEecCchhh
Confidence 36699999999999988887655 7899999999 74321 3456667788888999999974 13778999864
Q ss_pred HHHHHH
Q psy9410 100 ILYKIA 105 (736)
Q Consensus 100 ~~~~~a 105 (736)
+.+..
T Consensus 86 -~~~l~ 90 (328)
T 1i6k_A 86 -HAQAA 90 (328)
T ss_dssp -HHHHH
T ss_pred -hhHHH
Confidence 44433
No 80
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=97.84 E-value=1.4e-05 Score=85.41 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC-------CCcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD-------TNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD-------td~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
.|||.|||||...++.+|...+. +.++++-|.| .|++ +..+....+..++.++|++++. ...++||+..
T Consensus 12 ~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k--~~if~qS~~~ 87 (348)
T 2yy5_A 12 QASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQK--ACLFLQSDLL 87 (348)
T ss_dssp CCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTT--EEEEEGGGCH
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhH--eEEEECCccc
Confidence 35699999999999999876665 7889999988 5664 4455667778888999999973 1378899987
Q ss_pred HHHHHHHHHHHHcCCCcccCCCHHHHHHh
Q psy9410 99 DILYKIAEYLIISGDAYVDSQNTEEIYIN 127 (736)
Q Consensus 99 ~~~~~~a~~Li~~g~aY~c~~~~e~l~~~ 127 (736)
+ +.++.-.| .|.++..+++..
T Consensus 88 ~-~~el~w~l-------~~~~~~~~l~R~ 108 (348)
T 2yy5_A 88 E-HSMMGYLM-------MVQSNLGELQRM 108 (348)
T ss_dssp H-HHHHHHHH-------HHHSBHHHHHHC
T ss_pred c-hhHHHHHH-------HhhccHHHHhch
Confidence 6 44433222 356666665543
No 81
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.82 E-value=3.3e-05 Score=83.21 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=112.1
Q ss_pred CCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC----Cc-c-c---ccHHHHHHHHHHHHHcCCCCCC
Q psy9410 17 PQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT----NP-L-K---ENKEYVNSIIKTIKWLNFNWDK 86 (736)
Q Consensus 17 ~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt----d~-~-r---~~~~~~~~i~~dl~wLGi~~d~ 86 (736)
+-.| +-|.| ||.||||| ..++.++...+..|.++++-|.|. +. . + ...+....+..++.++|++++.
T Consensus 35 ~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k 111 (364)
T 2cya_A 35 RIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER 111 (364)
T ss_dssp CCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3456 88876 69999999 888998888888889999999882 22 1 2 2445667788899999999875
Q ss_pred CCCccccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhhcCCCCCCCCCCCCCCChhhhHHHHHHhhCCcccCCceE
Q psy9410 87 VKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHV 166 (736)
Q Consensus 87 gp~~~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r~~~~~~g~~~~~r~~~~~~~~~~~~~m~~g~~~~~~~~ 166 (736)
....+||+.... ..+...++. +-|.++-.++......
T Consensus 112 --~~i~~qS~~~~~-~~~~~~~~~----l~~~~t~~~l~r~~~~------------------------------------ 148 (364)
T 2cya_A 112 --VRFVDAEELASD-KDYWGLVIR----VAKRASLARVRRALTI------------------------------------ 148 (364)
T ss_dssp --CEEEEHHHHHTC-HHHHHHHHH----HHHTSCHHHHHTTC--------------------------------------
T ss_pred --eEEEecchhhcc-hHHHHHHHH----HHCcCcHHHHHcCchh------------------------------------
Confidence 136788888654 344444442 3456666555432210
Q ss_pred EEEEeeccCCCCCCCCcEEEEeccCCccccCCccccccccccccchhhhccccceeeccccccCchhHHHHHHhhcccCC
Q psy9410 167 LRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN 246 (736)
Q Consensus 167 ~R~k~~~~~~~~~~~D~Vl~R~~~~~h~~~~~~w~i~PtY~fa~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~ 246 (736)
..+.. .. ++. . .+.-+|-.-.+.|-.+.+.++++.|.|-..|...-.-+.+.++.
T Consensus 149 -k~r~~--~~------------~~i-----~---~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~-- 203 (364)
T 2cya_A 149 -MGRRA--EE------------AEV-----D---ASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR-- 203 (364)
T ss_dssp -----C--CG------------GGS-----C---THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC--
T ss_pred -hhhhc--CC------------CCc-----c---chhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC--
Confidence 00000 00 000 0 00123323334454567899999999888888888888888875
Q ss_pred cCCCCCCceEEEEee-ecC-----------------Ceecchhh
Q psy9410 247 FIKRPFPKQYEFSRL-NLT-----------------HTITSKRK 272 (736)
Q Consensus 247 ~~~~~~p~~~~f~~l-~~~-----------------g~klSKr~ 272 (736)
..|..+....| .++ |+|||||.
T Consensus 204 ----~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~ 243 (364)
T 2cya_A 204 ----KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243 (364)
T ss_dssp ----CCCEEEEECCCBCSSCC----------------CBCCSSS
T ss_pred ----CCceeeccceeeCCCcccccccccccccccccccccCCCC
Confidence 45644332222 345 68999995
No 82
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=97.81 E-value=4.1e-06 Score=91.44 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=43.9
Q ss_pred cceeccccccC-------cchhHhhCcccccccccccceeecccCccCccchhhcCccCcee
Q psy9410 600 CAIIKENKCIG-------CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654 (736)
Q Consensus 600 ~~~~d~~~Ci~-------Cg~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~ 654 (736)
.+.+|++.|.. |+.|+.+||++||..+. +...++...|++||.|+.+||++++.
T Consensus 242 ~~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~-~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 242 DIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDG-KELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp CCEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECS-SCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred cccccHHHHhhhccccccCccccccCCccccccCC-ceeEEChhhcCccChhHHhCcHhhcc
Confidence 35667766543 48999999999999874 45778999999999999999997644
No 83
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.80 E-value=3.1e-05 Score=92.41 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=69.9
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC--------------------ccc------------cc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN--------------------PLK------------EN 66 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd--------------------~~r------------~~ 66 (736)
+==+|+|||.|||||+++.++.+.++|. ..|.-++..-++| +.. ..
T Consensus 39 ~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~ 118 (862)
T 1gax_A 39 FMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118 (862)
T ss_dssp ECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHH
T ss_pred EcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHH
Confidence 4456999999999999999999999985 5688888876665 111 13
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCCccc
Q psy9410 67 KEYVNSIIKTIKWLNFNWDKVKKRIYYAS--DYFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 67 ~~~~~~i~~dl~wLGi~~d~gp~~~~~~S--e~~~~~~~~a~~Li~~g~aY~c 117 (736)
.++.+.|.+.|+.||+..|=. .++++. +|.......-.+|.++|++|.-
T Consensus 119 ~~~~~~~~~q~~rlG~s~Dw~--r~~~T~d~~~~~~v~~~F~~L~~kGliYrg 169 (862)
T 1gax_A 119 EESGGTILKQLKRLGASADWS--REAFTMDEKRSRAVRYAFSRYYHEGLAYRA 169 (862)
T ss_dssp HHHHHHHHHHHHHTTCCCCGG--GCEETTSHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHhCccccCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 577899999999999865410 144443 3444455666899999999943
No 84
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.78 E-value=6.9e-06 Score=98.25 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=65.1
Q ss_pred ECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCCc-----------------c----------------cccH
Q psy9410 23 FAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTNP-----------------L----------------KENK 67 (736)
Q Consensus 23 faP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd~-----------------~----------------r~~~ 67 (736)
=+|+|||.|||||+++.++.+.+||. ..|.-++..-++|. . ....
T Consensus 45 ~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~ 124 (821)
T 1ile_A 45 GPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVF 124 (821)
T ss_dssp CCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHH
Confidence 35899999999999999999999983 45666666655541 0 0123
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 68 EYVNSIIKTIKWLN--FNWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 68 ~~~~~i~~dl~wLG--i~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
++.+.+.+.|++|| ++||. .+++++ |....+....+|.++|++|.
T Consensus 125 ~~~~~~~~~~~~lg~~~dwd~----~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 125 TYEKEWEAFTERIAYWVDLED----AYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTHHHHTTHHHHTTCCCEEEE----EEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCeEccCC----CeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 56677889999999 88986 666655 22233344578999999995
No 85
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.74 E-value=1.1e-05 Score=93.04 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=47.4
Q ss_pred eeccccc------cCcchhHhhCccccccc-c-ccc---ceeecccCccCccchhhcCccCceeecc
Q psy9410 602 IIKENKC------IGCTLCIQSCPVDAIIG-A-AKH---MHTIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 602 ~~d~~~C------i~Cg~C~~~CP~~ai~~-~-~~~---~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
..|.+.| ..|+.|+++||.+++.. + .++ ...++.+.|+.||.|..+||+++|.+..
T Consensus 506 ~~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 506 LKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp ESSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECC
T ss_pred EcCcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCceeEC
Confidence 4477888 78999999999999987 4 244 5678999999999999999999998763
No 86
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.70 E-value=2.9e-05 Score=93.46 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=66.2
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC----------------c------------ccccHHHH
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN----------------P------------LKENKEYV 70 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd----------------~------------~r~~~~~~ 70 (736)
+==+|+|||.|||||+++.++.+.++|. ..|.-++..-++| + .....+++
T Consensus 53 ~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~ 132 (917)
T 1ffy_A 53 HDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQI 132 (917)
T ss_dssp ECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHH
Confidence 3346999999999999999999999984 3455555553333 2 11245678
Q ss_pred HHHHHHHHHcCC--CCCCCCCccccccc--cHHHHHHHHHHHHHcCCCcc
Q psy9410 71 NSIIKTIKWLNF--NWDKVKKRIYYASD--YFDILYKIAEYLIISGDAYV 116 (736)
Q Consensus 71 ~~i~~dl~wLGi--~~d~gp~~~~~~Se--~~~~~~~~a~~Li~~g~aY~ 116 (736)
+.+.++|+.||+ +|+. ++++.+ |....+....+|.++|++|.
T Consensus 133 ~~~~~~~~rlG~~~Dwd~----~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 133 ELQKKDFRRLGVRGDFND----PYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHTTTCCSCTTS----CEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhCeEEccCC----CeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 999999999999 5776 666654 22233445578999999994
No 87
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=97.64 E-value=4.2e-05 Score=81.95 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=62.8
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCCcc------cccHHHHHHHHHHHHHcCCCCCCCCCcc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPL------KENKEYVNSIIKTIKWLNFNWDKVKKRI 91 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd~~------r~~~~~~~~i~~dl~wLGi~~d~gp~~~ 91 (736)
.| +.|.| ||.|||||...++.+|...+.....+++--|.+... ....+....+..++.++|++++. ...
T Consensus 24 ~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k--~~i 99 (351)
T 1yi8_B 24 RVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQK--TTC 99 (351)
T ss_dssp EEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTT--EEE
T ss_pred EEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhh--cEE
Confidence 45 88887 699999999999888865544434455544443211 13456666778888899999874 136
Q ss_pred ccccccHHHHHHHHHHHHHcCCCcccCCCHHHHH
Q psy9410 92 YYASDYFDILYKIAEYLIISGDAYVDSQNTEEIY 125 (736)
Q Consensus 92 ~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~ 125 (736)
++||+..+ +.++.- .|.|.++-.+|.
T Consensus 100 ~~qS~~~~-~~el~~-------~l~~~~~v~~l~ 125 (351)
T 1yi8_B 100 VVQSAVPE-LAELTV-------YFLNLVTVSHLR 125 (351)
T ss_dssp EEGGGCTH-HHHHHH-------HHHTTSBHHHHH
T ss_pred EEcCchhh-HHHHHH-------HHhccCCHHHHH
Confidence 78999865 334322 355777777665
No 88
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=97.61 E-value=1.7e-05 Score=69.76 Aligned_cols=54 Identities=31% Similarity=0.800 Sum_probs=42.1
Q ss_pred cccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhh
Q psy9410 538 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 617 (736)
Q Consensus 538 p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~ 617 (736)
...|.+|+.+.|+ .+||.++.. ...+.+.++.+.|++||.|+.+
T Consensus 5 ~~~C~~C~~~~C~-------------~~CP~~ai~-----------------------~~~~~~~i~~~~C~~Cg~C~~~ 48 (106)
T 7fd1_A 5 TDNCIKCKYTDCV-------------EVCPVDCFY-----------------------EGPNFLVIHPDECIDCALCEPE 48 (106)
T ss_dssp CGGGTTTCCCHHH-------------HHCTTCCEE-----------------------ECSSCEEECTTTCCCCCTTGGG
T ss_pred ccccCCccCcHHH-------------HHcCccceE-----------------------cCCCcEEECcccCCChhhhHHh
Confidence 4679999987898 889987532 0112356888999999999999
Q ss_pred Cccccccccc
Q psy9410 618 CPVDAIIGAA 627 (736)
Q Consensus 618 CP~~ai~~~~ 627 (736)
||++||.+..
T Consensus 49 CP~~ai~~~~ 58 (106)
T 7fd1_A 49 CPAQAIFSED 58 (106)
T ss_dssp CTTCCEEEGG
T ss_pred CCChhhhccc
Confidence 9999998754
No 89
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.57 E-value=5.4e-05 Score=91.95 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=64.9
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHh--cCCEEEEEeeCCC-------------------------------------
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYK--YNGLCNLRFDDTN------------------------------------- 61 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~--~~G~~ilR~eDtd------------------------------------- 61 (736)
+==+|+|||.|||||+++.++.+.+||. ..|.-+++.-+.|
T Consensus 39 ~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~ 118 (967)
T 1wz2_A 39 TVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWT 118 (967)
T ss_dssp EECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHG
T ss_pred EeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHH
Confidence 4456999999999999999999999984 3455555432111
Q ss_pred ---cccccHHHHHHHHHHHHHcCCC--CCCCCCccccccc----cHHHHHHHHHHHHHcCCCccc
Q psy9410 62 ---PLKENKEYVNSIIKTIKWLNFN--WDKVKKRIYYASD----YFDILYKIAEYLIISGDAYVD 117 (736)
Q Consensus 62 ---~~r~~~~~~~~i~~dl~wLGi~--~d~gp~~~~~~Se----~~~~~~~~a~~Li~~g~aY~c 117 (736)
+......|.+.+.++|+.||+. |+. ++.+.+ |....+..-.+|.++|++|.-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r----~~~T~d~np~y~~~v~~~F~~L~~kGliyr~ 179 (967)
T 1wz2_A 119 FEDPINIVKYFMKAAKETFIRAGFSVDWSR----EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKG 179 (967)
T ss_dssp GGSHHHHHHHHHHHHHHHHHTTTCCCCTTS----CCBCSTTSHHHHHHHHHHHHHTTTTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceEecCC----CeEECCCChhHHHHHHHHHHHHHHCCCEEEe
Confidence 2222345668899999999985 555 666666 333334455788899999943
No 90
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=97.56 E-value=0.00012 Score=78.04 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=62.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcC-CEEEEEeeCC----C---ccc-ccHHHHHHHHHHHHHcCCCCCCCCCccccccc
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYN-GLCNLRFDDT----N---PLK-ENKEYVNSIIKTIKWLNFNWDKVKKRIYYASD 96 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~-G~~ilR~eDt----d---~~r-~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se 96 (736)
.|||.|||||...++.+|...+..| .+.++-|.|. . +.. ...+....+..++.++|++++. ...++||+
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k--~~i~~qS~ 86 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEK--VTLFVQSH 86 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTT--SEEEEGGG
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhh--eEEEEcCc
Confidence 3679999999998888888666666 6788888772 2 211 2456667778888889999874 13788999
Q ss_pred cHHHHHHHHHHHHHcCCCcccCCCHHHHH
Q psy9410 97 YFDILYKIAEYLIISGDAYVDSQNTEEIY 125 (736)
Q Consensus 97 ~~~~~~~~a~~Li~~g~aY~c~~~~e~l~ 125 (736)
..+ +.+++.. +.|.++-.++.
T Consensus 87 ~~~-~~el~~~-------l~~~~~~~~l~ 107 (337)
T 2el7_A 87 VPE-HTELSWV-------FTTLTPLGDLT 107 (337)
T ss_dssp STH-HHHHHHH-------HHHTSBHHHHH
T ss_pred chh-hHHHHHH-------HHccCCHHHHH
Confidence 865 4444322 45666666554
No 91
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=97.54 E-value=9.5e-06 Score=71.29 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=54.0
Q ss_pred cccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhh
Q psy9410 538 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 617 (736)
Q Consensus 538 p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~ 617 (736)
...|.+|+...|+ .+||.++.. + ....+.++.+.|++||.|+.+
T Consensus 5 ~~~C~~C~c~~C~-------------~~CP~~ai~--------~---------------~~~~~~~~~~~C~~Cg~C~~~ 48 (105)
T 2v2k_A 5 AEPCVDVKDKACI-------------EECPVDCIY--------E---------------GARMLYIHPDECVDCGACEPV 48 (105)
T ss_dssp CGGGTTTCCCHHH-------------HHCTTCCEE--------E---------------CSSCEEECTTTCCCCCCSGGG
T ss_pred cccCCCCCcChhh-------------hhcCccccC--------c---------------CCCcEEEeCCcCcchhhHHHh
Confidence 3578888545677 789987632 0 012356789999999999999
Q ss_pred CcccccccccccceeecccCccC-ccchhhcCccCceeecccC
Q psy9410 618 CPVDAIIGAAKHMHTIFSKLCTG-CDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 618 CP~~ai~~~~~~~~~~~~~~C~~-Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
||++||.+.......+....... --.....||.+|+.+....
T Consensus 49 CP~~Ai~~~~~~~~~~~~~~~~d~~~~~~~~~~~ga~~~g~~~ 91 (105)
T 2v2k_A 49 CPVEAIYYEDDVPDQWSSYAQANADFFAELGSPGGASKVGQTD 91 (105)
T ss_dssp CTTCCEEEGGGCCGGGTTHHHHHHHTTTTTCCCSCHHHHCSCS
T ss_pred CCccCEEecCCChHHHHHHHHhchHHHhhcCCCcceEEeecCC
Confidence 99999986533211110000000 0012478999999887654
No 92
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.47 E-value=4.3e-05 Score=87.92 Aligned_cols=61 Identities=38% Similarity=0.834 Sum_probs=48.9
Q ss_pred ccceecccccc--Ccc-hhHhhCccc-----ccccc-cccceeecccCccCccchhhcCccCceeecccC
Q psy9410 599 CCAIIKENKCI--GCT-LCIQSCPVD-----AIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659 (736)
Q Consensus 599 ~~~~~d~~~Ci--~Cg-~C~~~CP~~-----ai~~~-~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 659 (736)
.+..+|.++|. .|+ .|.+.||.. +|.++ ..+...+.+..|++||.||..||.+||.+....
T Consensus 7 ~~~~~~~~~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~nl~ 76 (608)
T 3j16_B 7 RIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLP 76 (608)
T ss_dssp EEEEECSSSCCHHHHCSHHHHHCHHHHHTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCEEEEEES
T ss_pred eEEEEeccccCccccccchhhcCCCccCCceEEEEcCCCCceEEehhhccccccccccCCccceEEecCC
Confidence 46788999995 585 799999973 55553 334567888999999999999999999987654
No 93
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.45 E-value=1.7e-05 Score=80.71 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=35.5
Q ss_pred eccccccCcchhHhhCccccccc----------------cc-ccc----------eeecccCccCccchhhcCccC
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIG----------------AA-KHM----------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~----------------~~-~~~----------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
.+...|++||.|+.+||.+++.. +. ... .......|+.||.|+.+||.+
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKN 221 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHHCTTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTC
T ss_pred hhhhhhhccCcCcccCCCCccCCCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCC
Confidence 45689999999999999986521 00 000 012345899999999999998
No 94
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=97.39 E-value=0.0001 Score=56.22 Aligned_cols=25 Identities=40% Similarity=0.937 Sum_probs=22.3
Q ss_pred ceeccccccCcchhHhhCccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..++.+.|++||.|+.+||++||.+
T Consensus 30 ~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 30 YVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred EEeccccCcChhChHHHccccceec
Confidence 4678899999999999999999864
No 95
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=97.35 E-value=3.6e-05 Score=83.99 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=35.6
Q ss_pred chhHhhCcccccccccccceeecccCccCccchhhcCccCce
Q psy9410 612 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653 (736)
Q Consensus 612 g~C~~~CP~~ai~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~Ai 653 (736)
+.|+.+||++||..+. +...++...|+.||+|+.+||+.+.
T Consensus 278 ~~vv~~CPt~ai~~~~-~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 278 AEVVGLCPTGCMTYES-GTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHTTTTCTTCCEEEET-TEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhhccCcHHheeecC-CEEEEccccCCchhhhHhhCcHhhc
Confidence 5799999999999874 4567899999999999999999654
No 96
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.26 E-value=5.6e-05 Score=77.43 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=35.3
Q ss_pred eeccccccCcchhHhhCccccccc----c-----------cccc---------ee---ecccCccCccchhhcCccC
Q psy9410 602 IIKENKCIGCTLCIQSCPVDAIIG----A-----------AKHM---------HT---IFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 602 ~~d~~~Ci~Cg~C~~~CP~~ai~~----~-----------~~~~---------~~---~~~~~C~~Cg~Cv~~CP~~ 651 (736)
..+...||+||.|+.+||..++.. . .+.. .. .....|+.||.|+.+||.+
T Consensus 152 ~~~~~~Ci~CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 152 LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp TTTTTTCCCCCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTC
T ss_pred hHhHHhchhhCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCccccchhhhcCCC
Confidence 346789999999999999865310 0 0100 01 1236899999999999999
No 97
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=97.23 E-value=0.0002 Score=58.84 Aligned_cols=27 Identities=37% Similarity=0.727 Sum_probs=23.9
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+.++.+.|++||.|+.+||.+||.+.
T Consensus 31 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 57 (77)
T 1bc6_A 31 QYYIDPDVCIDCGACEAVCPVSAIYHE 57 (77)
T ss_dssp SEEECTTTCCSCCSHHHHSGGGSSEET
T ss_pred cEEECcccCcCccCCHhhcCccceEec
Confidence 356789999999999999999999864
No 98
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.14 E-value=0.0003 Score=58.21 Aligned_cols=27 Identities=33% Similarity=0.738 Sum_probs=23.9
Q ss_pred ceeccccccCcc------hhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCT------LCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg------~C~~~CP~~ai~~~~ 627 (736)
+.++.++|++|+ .|+.+||++||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 30 YVIDPTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp CEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred eEEcchhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 567899999999 999999999998753
No 99
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=97.12 E-value=0.00018 Score=69.55 Aligned_cols=28 Identities=36% Similarity=0.673 Sum_probs=24.4
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
...++..+|++||.|+.+||++||.+..
T Consensus 90 ~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 90 VYEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp EEEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred eeecCCCcCcChhChhhhCCccceEecC
Confidence 4567889999999999999999998753
No 100
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=97.09 E-value=4.6e-05 Score=90.02 Aligned_cols=55 Identities=24% Similarity=0.552 Sum_probs=39.4
Q ss_pred ceeccccccCcchhHhhCcccccccc-----ccc---ceeecccCccCccchhhcCccCceee
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA-----AKH---MHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~-----~~~---~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
+..+.++|++||.|+.+||.++.... ..+ ........|+.||.|+.+||++++..
T Consensus 410 i~~~~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 410 LVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHHHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTCCCHH
T ss_pred HHHhHHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCCCChH
Confidence 34577899999999999999753211 011 01123467999999999999998754
No 101
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.09 E-value=0.00032 Score=58.30 Aligned_cols=27 Identities=41% Similarity=0.765 Sum_probs=23.9
Q ss_pred ceeccccccCcc------hhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCT------LCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg------~C~~~CP~~ai~~~~ 627 (736)
+.++.++|++|+ .|+.+||++||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 30 YVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp EEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred EEEEchhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 567899999999 999999999998753
No 102
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.08 E-value=0.00073 Score=71.23 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=72.8
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeC-C---C---cccccHHHHHHHHHHHHHcCCCCCCCCCc
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDD-T---N---PLKENKEYVNSIIKTIKWLNFNWDKVKKR 90 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eD-t---d---~~r~~~~~~~~i~~dl~wLGi~~d~gp~~ 90 (736)
.| +.|.| ||.||||| ..++.++...+..|.++++.|.| | . ......++...+..++.++|++ ..
T Consensus 30 ~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d-~~---- 101 (314)
T 2zp1_A 30 SAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK-AK---- 101 (314)
T ss_dssp EEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC-CE----
T ss_pred EEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC-eE----
Confidence 46 89988 58999999 99999999988888999999955 2 1 2244567778899999999998 54
Q ss_pred cccccccHHHHHHHHHHHHHcCCCcccCCCHHHHHHhh
Q psy9410 91 IYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINR 128 (736)
Q Consensus 91 ~~~~Se~~~~~~~~a~~Li~~g~aY~c~~~~e~l~~~r 128 (736)
..+||+.... ..+...|+ .+-|.++..++....
T Consensus 102 ~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~ 134 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSM 134 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHT
T ss_pred EEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccc
Confidence 7789998754 34455454 345677777776544
No 103
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.07 E-value=0.00027 Score=58.90 Aligned_cols=28 Identities=39% Similarity=0.901 Sum_probs=24.5
Q ss_pred cceeccccccCcc------hhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCT------LCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg------~C~~~CP~~ai~~~~ 627 (736)
.+.++.++|++|+ .|+.+||++||.+..
T Consensus 29 ~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 3eun_A 29 TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDP 62 (82)
T ss_dssp SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECG
T ss_pred ceEEchhhcCCCCCCCCccHHHHhCCccceEEcC
Confidence 3568889999999 999999999998754
No 104
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=97.05 E-value=0.00016 Score=69.13 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.5
Q ss_pred cceeccccccCcchhHhhCcccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.+.+|.++|++||.|+.+||++||.+.
T Consensus 38 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 64 (166)
T 3gyx_B 38 AFNQEPEACWECYSCIKICPQGAITAR 64 (166)
T ss_dssp EEESCGGGCCCCCHHHHHCSSCCEEEC
T ss_pred eEecCcccCcccChHhHhCCccceEEe
Confidence 346788999999999999999999754
No 105
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=97.02 E-value=0.00018 Score=67.44 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.3
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++||.|+.+||++||.+.
T Consensus 40 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (150)
T 1jnr_B 40 YNREPDMCWECYSCVKMCPQGAIDVR 65 (150)
T ss_dssp EESCGGGCCCCCHHHHHCTTCCEEEC
T ss_pred eeeCcccCcCHhHHHHhCCccceEec
Confidence 46788999999999999999999764
No 106
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=96.99 E-value=0.00024 Score=58.48 Aligned_cols=27 Identities=37% Similarity=0.892 Sum_probs=23.8
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
+.++.+.|++||.|+.+||.+||.+..
T Consensus 32 ~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 32 FYIHPEECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp EEECTTTCCCCCTHHHHCTTCCEEEGG
T ss_pred EEECcccCCcHhHHHHhCCccceEecc
Confidence 567899999999999999999998643
No 107
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=96.89 E-value=0.00059 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.826 Sum_probs=23.8
Q ss_pred ceeccccccCcc------hhHhhCcc-ccccccc
Q psy9410 601 AIIKENKCIGCT------LCIQSCPV-DAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg------~C~~~CP~-~ai~~~~ 627 (736)
..++.++|++|| .|+.+||+ +||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~ 63 (85)
T 2zvs_A 30 YEINSDKCTECVGHYETPTCQKVCPIPNTIVKDP 63 (85)
T ss_dssp CEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTT
T ss_pred eEEeChhccCCCCcCCccHhhHhCcCCCCEEecC
Confidence 567889999999 99999999 9998753
No 108
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.83 E-value=0.00051 Score=79.10 Aligned_cols=59 Identities=42% Similarity=0.847 Sum_probs=47.8
Q ss_pred Ccccceecccccc--Ccc--hhHhhCccc-----ccccccc-cceeecccCccCccchhhcCccCceee
Q psy9410 597 SRCCAIIKENKCI--GCT--LCIQSCPVD-----AIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISM 655 (736)
Q Consensus 597 ~~~~~~~d~~~Ci--~Cg--~C~~~CP~~-----ai~~~~~-~~~~~~~~~C~~Cg~Cv~~CP~~Ai~~ 655 (736)
...+.++|.++|. .|+ .|.+.||.. +|.++.. +...+....|++||.|+..||..||.+
T Consensus 18 ~~~~~~~~~~~c~p~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 18 KMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp CEEEEECCGGGCCTTTSSSCHHHHHCHHHHTTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred cceEEEeeccccCCCCCChhhHhhhCCCCcCCceEEEEcCCCCcceeeecccCccccccCCCCcceEEE
Confidence 3456788999995 696 899999973 4555444 556778889999999999999999888
No 109
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=96.77 E-value=0.00045 Score=60.03 Aligned_cols=26 Identities=38% Similarity=0.773 Sum_probs=22.9
Q ss_pred ceeccccccCcchhHhhCcccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
..++.+.|++||.|+.+||++||.+.
T Consensus 76 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 76 DPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp ECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred eecCcccccChhhHHHhccccceEec
Confidence 45688999999999999999999764
No 110
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=96.67 E-value=0.0011 Score=71.97 Aligned_cols=51 Identities=31% Similarity=0.620 Sum_probs=46.4
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCc
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII 586 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~ 586 (736)
+|..+|+.||+|+|+.+|+++++|....+.||.++......++..+.-+..
T Consensus 12 LP~~nCg~CG~~~C~~fA~ai~~G~a~~~~Cp~~~~~~~~~la~~lappI~ 62 (446)
T 4djd_C 12 LPKKNCGECGTPTCLAFAMNLASGKASLDSCPYVSDAAREALDAAAAPPIA 62 (446)
T ss_dssp SCCCCCCTTSSSSHHHHHHHHHHTCSCGGGCSCSCHHHHHHHHHTTSCSSC
T ss_pred CCCCCCCCCCccCHHHHHHHHHcCCCCcccCCCCcHHHHHHHHhhccCCce
Confidence 688999999999999999999999999999999999988888888876543
No 111
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=96.63 E-value=0.00028 Score=76.09 Aligned_cols=51 Identities=25% Similarity=0.585 Sum_probs=39.3
Q ss_pred CCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCCcccceeccccccCcchhHhhCccc
Q psy9410 542 TKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVD 621 (736)
Q Consensus 542 ~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~~~Ci~Cg~C~~~CP~~ 621 (736)
..|+.+.|. .+||+++.. .....+.+.+|.++|++||.|+.+||.+
T Consensus 209 ~~Ce~~~Cv-------------~~CP~~AI~---------------------~~~~~~~~~id~~~C~~Cg~C~~~CP~~ 254 (366)
T 3mm5_B 209 KTCEIPSTV-------------AACPTGALK---------------------PDMKNKTIKVDVEKCMYCGNCYTMCPGM 254 (366)
T ss_dssp HHCCHHHHH-------------HTCTTCCEE---------------------EETTTTEEEECGGGCCCCCHHHHHCTTC
T ss_pred ccccccchh-------------ccCCccceE---------------------ecCCCCeEEEehhhCCCcchHHHhCCHh
Confidence 567766777 899998853 0112346889999999999999999999
Q ss_pred ccccc
Q psy9410 622 AIIGA 626 (736)
Q Consensus 622 ai~~~ 626 (736)
||...
T Consensus 255 Ai~~~ 259 (366)
T 3mm5_B 255 PLFDP 259 (366)
T ss_dssp CCCCT
T ss_pred hcccc
Confidence 99654
No 112
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=96.41 E-value=0.00087 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.4
Q ss_pred ceec--cccccCcchhHhhCccccccc
Q psy9410 601 AIIK--ENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 601 ~~~d--~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..++ .+.|++|+.|+.+||.+||.+
T Consensus 31 ~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 31 AVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp EEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred EEeCCCccchHHHHHHHhhCChhhEEe
Confidence 3455 789999999999999999875
No 113
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=96.40 E-value=0.0017 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred eccccccCcchhHhhCccccccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
++.+.|++|+.|+.+||.+||.+
T Consensus 36 ~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred cChhhhhHHHHHHHhCCHhhEEc
Confidence 58889999999999999999864
No 114
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.35 E-value=0.0022 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred ccccccCcchhHhhCcccccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+.|++|+.|+.+||.+||.+.
T Consensus 37 ~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 37 PETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SSCCSTTHHHHHHHCTTCCEECC
T ss_pred chhhHHHHHHHHHhCCHhHEEEe
Confidence 37889999999999999999763
No 115
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=96.35 E-value=0.00075 Score=52.99 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred ccccccCcchhHhhCcccccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+.|++|+.|+.+||.+||.+.
T Consensus 40 ~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 40 EGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp GGSCHHHHHHHHHHSSSCCEECC
T ss_pred CCcchhHHHHHHHhCCHhhEeee
Confidence 47899999999999999999864
No 116
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=96.23 E-value=0.002 Score=76.86 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=51.7
Q ss_pred CceE-EEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHH
Q psy9410 253 PKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 331 (736)
Q Consensus 253 p~~~-~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~ 331 (736)
|+.+ ..+++..+|+|||||+++.+ ++.++.++ |.++++|.|++..+....+..|+.+.+....
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GNvv---------------~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 698 (810)
T 1wkb_A 635 PKGIAVNGFGTLEGQKMSKSKGNVL---------------NFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698 (810)
T ss_dssp CCEEEEECCEEETTBCCCTTTTCCC---------------BHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHHH
T ss_pred ccEEEEEeEEEeCCeehhhcCCCcC---------------CHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHHH
Confidence 4433 56678889999999998654 78888887 9999999999888888888889988776654
Q ss_pred h
Q psy9410 332 R 332 (736)
Q Consensus 332 ~ 332 (736)
+
T Consensus 699 ~ 699 (810)
T 1wkb_A 699 K 699 (810)
T ss_dssp H
T ss_pred H
Confidence 3
No 117
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=96.22 E-value=0.0013 Score=72.28 Aligned_cols=22 Identities=36% Similarity=0.931 Sum_probs=21.0
Q ss_pred ccccccCcchhHhhCccccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
+.+.|++||.|+.+||++||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp CGGGCCCCCTTGGGCTTCCEEE
T ss_pred ChhhCCchhhHHHhhCcCCccc
Confidence 8899999999999999999986
No 118
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=96.16 E-value=0.0007 Score=73.47 Aligned_cols=28 Identities=21% Similarity=0.649 Sum_probs=25.0
Q ss_pred cceeccccccCcchhHhhCccccccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
.+.+|.++|++||.|+.+||.+||....
T Consensus 250 ~v~id~~~Ci~Cg~C~~~CP~~Ai~~~~ 277 (386)
T 3or1_B 250 SVAINNDRCMYCGNCYTMCPALPLSDGT 277 (386)
T ss_dssp EEEECTTTCCCCCHHHHHCTTCCCCCTT
T ss_pred ccccCCCcCCccccHHHhCcHhhCcCCC
Confidence 4789999999999999999999997643
No 119
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=95.97 E-value=0.0035 Score=76.12 Aligned_cols=61 Identities=15% Similarity=0.015 Sum_probs=50.7
Q ss_pred EEEEeeecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 256 YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 256 ~~f~~l~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
+..+++..+|+|||||++|.+ ++.++.++ |.++++|.|++..+....+..|+.+.+....+
T Consensus 639 ~~~G~v~~~G~KMSKS~GNvv---------------~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~ 699 (967)
T 1wz2_A 639 AVNGFGTLEGQKMSKSKGNVL---------------NFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKLRK 699 (967)
T ss_dssp EEECCEEESSSCCCTTTCCCC---------------BHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHHHH
T ss_pred EEeeEEeeCCEEccccccCCC---------------CHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHHHH
Confidence 356677789999999998654 78888887 99999999998888888888898887776544
No 120
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=95.86 E-value=0.0016 Score=71.51 Aligned_cols=50 Identities=32% Similarity=0.636 Sum_probs=1.4
Q ss_pred cCcccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCC
Q psy9410 536 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPI 585 (736)
Q Consensus 536 ~~p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~ 585 (736)
+|.++|+.||+|+|+.||++++.|....+.||.++.....+++..++.+.
T Consensus 12 LP~~nCg~CG~p~C~~~A~ai~~g~a~i~~Cp~g~ee~~ekLaellap~i 61 (445)
T 2h9a_A 12 LPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPV 61 (445)
T ss_dssp -----------------------------------------------CCS
T ss_pred CCCCCCccCCcccHHHHHHHHHcCCCCCCCCCcCcHHHHHHHHhcccccc
Confidence 68899999999999999999999999999999999887777777776543
No 121
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=95.77 E-value=0.0018 Score=66.80 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=32.0
Q ss_pred cccccCcchhHhhCccccccc-----------------ccccc----------eeecccCccCccchhhcCccC
Q psy9410 605 ENKCIGCTLCIQSCPVDAIIG-----------------AAKHM----------HTIFSKLCTGCDLCIKKCPVN 651 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~ai~~-----------------~~~~~----------~~~~~~~C~~Cg~Cv~~CP~~ 651 (736)
...||.||.|..+||...... +.... .......|..||.|..+||.+
T Consensus 179 ~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 179 LYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKH 252 (282)
T ss_pred hhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccChhhCCccccCcCC
Confidence 357999999999999753210 00000 001235799999999999998
No 122
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=95.57 E-value=0.0031 Score=68.73 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=24.1
Q ss_pred ccceeccccccCcchhHhhCcccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
+.+.+|.+.|++||.|+.+||.+++...
T Consensus 277 ~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~ 304 (418)
T 3mm5_A 277 KELTIDNRECVRCMHCINKMPKALKPGD 304 (418)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTTEECCS
T ss_pred ceeEEChhhcCccChhHHhCcHhhccCC
Confidence 4678999999999999999999876543
No 123
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.57 E-value=0.011 Score=70.69 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=49.0
Q ss_pred ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHhcccCC
Q psy9410 262 NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDI 337 (736)
Q Consensus 262 ~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~~~l~~ 337 (736)
..+|+|||||+++.+ ++.++.++ |.++++|.|++..+...++..|+++.+...++..+++
T Consensus 586 ~~~G~KMSKS~GNvV---------------~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~k 645 (821)
T 1ile_A 586 DEKGQKMSKSKGNVV---------------DPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLT 645 (821)
T ss_dssp CTTSSCCCTTTTCCC---------------CHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHH
T ss_pred CCCCCCCCccCCCCC---------------CHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHH
Confidence 458999999998654 78888887 9999999999998877789999999998854444443
No 124
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=95.18 E-value=0.021 Score=61.59 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=54.1
Q ss_pred EEECCCCCCcCchhHHHHH-HHHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 21 TRFAPEPNGYLHIGHAKSI-FINFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~a-l~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
+-..=.|||.|||||.-.+ +++| +.+.++..+++=|.|.. ......+....+..++-.+|++++. ....
T Consensus 85 vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k--t~i~ 161 (386)
T 3hzr_A 85 IFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK--TFIY 161 (386)
T ss_dssp EEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG--EEEE
T ss_pred EEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc--eEEE
Confidence 3334567899999999999 7777 66667777777788732 1122344445566667778999864 1356
Q ss_pred cccccHHHHHHHH
Q psy9410 93 YASDYFDILYKIA 105 (736)
Q Consensus 93 ~~Se~~~~~~~~a 105 (736)
.||+....++..+
T Consensus 162 ~qS~~~~~~~~~~ 174 (386)
T 3hzr_A 162 TDYQYFGKMYRTI 174 (386)
T ss_dssp EHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHH
Confidence 7888876444433
No 125
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=94.98 E-value=0.0085 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.919 Sum_probs=22.5
Q ss_pred eecccCccCccchhhcCccCceeecc
Q psy9410 632 TIFSKLCTGCDLCIKKCPVNCISMIE 657 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~Ai~~~~ 657 (736)
.++...|++||.|+.+||++||.+.+
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred cccCCcCcChhHHHHHCCcccccccc
Confidence 45667899999999999999998764
No 126
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=94.97 E-value=0.0062 Score=75.33 Aligned_cols=26 Identities=31% Similarity=0.740 Sum_probs=23.1
Q ss_pred cceeccccccCcchhHhhCcc--ccccc
Q psy9410 600 CAIIKENKCIGCTLCIQSCPV--DAIIG 625 (736)
Q Consensus 600 ~~~~d~~~Ci~Cg~C~~~CP~--~ai~~ 625 (736)
.+.++.+.|++||.|+.+||. +||.+
T Consensus 736 ~~~v~~~~C~gCG~Cv~vCP~~~~AI~~ 763 (1231)
T 2c42_A 736 RIQINTLDCMGCGNCADICPPKEKALVM 763 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSSSCSEEE
T ss_pred ceeechhhCCChhHHHhhCCCCccCeEE
Confidence 457889999999999999999 99865
No 127
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.01 Score=68.21 Aligned_cols=30 Identities=43% Similarity=0.871 Sum_probs=26.3
Q ss_pred CCcccceeccccccCcchhHhhCccccccc
Q psy9410 596 KSRCCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 596 ~~~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
...+.+.|.++.|||||.|++-||++||.+
T Consensus 43 ~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i 72 (608)
T 3j16_B 43 PTSKIAFISEILCIGCGICVKKCPFDAIQI 72 (608)
T ss_dssp TTTTEEEECTTTCCCCCHHHHHCSSCCEEE
T ss_pred CCCCceEEehhhccccccccccCCccceEE
Confidence 345678899999999999999999999975
No 128
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.59 E-value=0.039 Score=60.38 Aligned_cols=59 Identities=7% Similarity=-0.126 Sum_probs=37.6
Q ss_pred cchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEee-ecCCe-ecchhhhh
Q psy9410 210 HPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHT-ITSKRKLL 274 (736)
Q Consensus 210 ~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l-~~~g~-klSKr~~~ 274 (736)
.+.|-...+.++++-|.|-..|...-.-+.+.+|. .++..+....| .++|+ |||||.++
T Consensus 179 QaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~------~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 179 QAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ------SPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTC------CCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCC------CCceEeecccccCCCCccccCcCCCC
Confidence 34444455688999998877777766667777774 33322221112 35786 99999864
No 129
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=94.46 E-value=0.0056 Score=70.30 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=41.5
Q ss_pred cccCCCCCCCCchhHHHHHHcCcccCccCCCChhHHHHHHHHhcCcCCccCccccCCCCC-cccceeccccccCcchhHh
Q psy9410 538 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKS-RCCAIIKENKCIGCTLCIQ 616 (736)
Q Consensus 538 p~~C~~C~~~~C~~~a~~i~~~~~~~~~C~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~d~~~Ci~Cg~C~~ 616 (736)
...|.+|...+|. ..||.+.-. .. ...+. ...+.+|.+.|+.||.|..
T Consensus 513 ~~~~~~~~~~~c~-------------~~CPa~~~~-----------------~~-~~~~~~~~~~~i~~~~Ci~C~~C~~ 561 (584)
T 2gmh_A 513 VNRNLSIYDGPEQ-------------RFCPAGVYE-----------------FV-PLEQGDGFRLQINAQNCVHCKTCDI 561 (584)
T ss_dssp HHTHHHHHCCTHH-------------HHCTTCCEE-----------------EE-ECSSTTCEEEEECGGGCCCCCHHHH
T ss_pred hhhchhhhcchhh-------------hcCChhhEE-----------------Ee-ecCCCCceEEEEeCCCCcCCCCchh
Confidence 3566777777887 889988632 00 00111 1168899999999999999
Q ss_pred hCcccccccc
Q psy9410 617 SCPVDAIIGA 626 (736)
Q Consensus 617 ~CP~~ai~~~ 626 (736)
+||+++|...
T Consensus 562 ~cp~~~i~~~ 571 (584)
T 2gmh_A 562 KDPSQNINWV 571 (584)
T ss_dssp HCTTCCEEEC
T ss_pred hCCCCCceeE
Confidence 9999999654
No 130
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=94.43 E-value=0.033 Score=66.99 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=43.2
Q ss_pred Eeeec-CCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHH
Q psy9410 259 SRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 330 (736)
Q Consensus 259 ~~l~~-~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~ 330 (736)
+++.. +|.|||||++|.+ ++.++.++ |.++++|.|++. +....+..|+++.+...
T Consensus 586 G~V~d~~G~KMSKSlGNvV---------------~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 586 GFVMDGEGKKMSKSLGNVI---------------VPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp CCEECTTSCCCCSSSSCCC---------------CHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred eeEEcCCCcCcccccCCcC---------------ChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 45553 8999999998654 78888876 999999988887 66677888888766543
No 131
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=94.22 E-value=0.018 Score=47.34 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=21.3
Q ss_pred eeecccCccCccchhhcCccCceeec
Q psy9410 631 HTIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 631 ~~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
..++..+|++||.|+.+|| +++.+.
T Consensus 4 v~vd~~~CigCg~C~~~CP-~~~~~~ 28 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAP-DIYDYD 28 (81)
T ss_dssp EEECTTTCCCCSHHHHHCT-TTEEEC
T ss_pred EEEecccCcccChhhHhCc-hheeeC
Confidence 3567889999999999999 788764
No 132
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=94.13 E-value=0.0065 Score=69.48 Aligned_cols=27 Identities=30% Similarity=0.776 Sum_probs=23.7
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
..++.+.|++||.|+.+||++||....
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred ceechhhCCcchhHHHhhccCCccccc
Confidence 457889999999999999999998653
No 133
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=93.69 E-value=0.012 Score=72.06 Aligned_cols=26 Identities=38% Similarity=1.036 Sum_probs=22.4
Q ss_pred ceeccccccCcchhHhhCcc-ccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPV-DAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~-~ai~~~~ 627 (736)
..++ +.|++||.|+.+||. +||.+..
T Consensus 980 ~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~ 1006 (1025)
T 1gte_A 980 PTVT-DTCTGCTLCLSVCPIIDCIRMVS 1006 (1025)
T ss_dssp EEEC-TTCCCCCHHHHHCSSTTTEEEEE
T ss_pred EEeC-ccCCChhHHHhhCCCCCCEEEec
Confidence 4566 899999999999999 9998753
No 134
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.67 E-value=0.072 Score=56.06 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=56.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-----Ccc-cccHHHHHHHHHHHHHcCCCCCCCCCccccccccHH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-----NPL-KENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD 99 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-----d~~-r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~ 99 (736)
.|||.|||||.-.++.++..-.. |.+.++-|.|. ++. ....+....+..++..+|++++. ...++||+..+
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k--~~i~~qS~~~~ 87 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQK--SVFWLQSDVKE 87 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTT--SEEEEGGGCTH
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccc--eEEEECCcchh
Confidence 47799999999988887655444 55666656553 221 12345566677777789999874 24778998865
Q ss_pred HHHHHHHHHHHcCCCcccCCCHHHHH
Q psy9410 100 ILYKIAEYLIISGDAYVDSQNTEEIY 125 (736)
Q Consensus 100 ~~~~~a~~Li~~g~aY~c~~~~e~l~ 125 (736)
+.+++-.| -|.++-.++.
T Consensus 88 -~~el~~~l-------~~~~~~~~l~ 105 (322)
T 3tzl_A 88 -VMELYWIL-------SQFTPMGLLE 105 (322)
T ss_dssp -HHHHHHHH-------GGGCBHHHHH
T ss_pred -HHHHHHHH-------hccCcHHHHH
Confidence 44444322 4666665554
No 135
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=93.46 E-value=0.089 Score=62.76 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=45.8
Q ss_pred ecCCeecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 262 NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 262 ~~~g~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
..+|.|||||++|.+ +..++.++ |.++++|.|++..+....+..|+++.++...+
T Consensus 523 d~~G~KMSKSlGNvI---------------dP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~ 577 (862)
T 1gax_A 523 DEKGQKMSKSKGNVI---------------DPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMARN 577 (862)
T ss_dssp CTTSCBCCTTTTCCC---------------CHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHHHH
T ss_pred cCCCCCccccCCCCC---------------CHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHHHH
Confidence 358999999998654 77888876 99999999999988888888899988877544
No 136
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=93.33 E-value=0.025 Score=67.06 Aligned_cols=20 Identities=20% Similarity=0.213 Sum_probs=18.4
Q ss_pred cccCcchhHhhCcccccccc
Q psy9410 607 KCIGCTLCIQSCPVDAIIGA 626 (736)
Q Consensus 607 ~Ci~Cg~C~~~CP~~ai~~~ 626 (736)
.|+.||.|+.+||++||...
T Consensus 219 ~C~~CG~Cv~vCP~gAl~~~ 238 (783)
T 3i9v_3 219 PSGFSGNITDICPVGALLDL 238 (783)
T ss_dssp CSTTTTTHHHHCSSSSEEEG
T ss_pred CCccchhHHhhcccCceecc
Confidence 79999999999999999754
No 137
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=93.11 E-value=0.11 Score=55.66 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=61.3
Q ss_pred eeehhccCCCCCCcE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCCC----cccc----cHHHHHHHHHH
Q psy9410 6 CFIYDKYGNKLPQVI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTN----PLKE----NKEYVNSIIKT 76 (736)
Q Consensus 6 ~~~~~~~~~~~~~~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDtd----~~r~----~~~~~~~i~~d 76 (736)
+-|.+.+..-.|-.| +=+. |||.|||||.-.++.++.+. ..+...++=|.|.- .... .......+..+
T Consensus 59 d~il~~~e~gk~~~v~sG~~--PTG~lHLGhyv~~~~~~~lq-~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 59 DKILEAKARGERVAVLTGFM--PSGKFHFGHKLTVDQLIYLQ-KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp HHHHHHHHTTCCCEEEEEEC--CCSCCBHHHHHHHHHHHHHH-HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCCCCEEEeCcC--CCcHhHHHHHHHHHHHHHHH-hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHH
Confidence 345555556566566 5555 47999999999666555444 45677777776642 1111 23344455666
Q ss_pred HHHcCCCCCCCCCccccccccHHHHHHHHHH
Q psy9410 77 IKWLNFNWDKVKKRIYYASDYFDILYKIAEY 107 (736)
Q Consensus 77 l~wLGi~~d~gp~~~~~~Se~~~~~~~~a~~ 107 (736)
+-.+|++++. ...++||++...+++.+..
T Consensus 136 ~lA~GlDP~k--t~if~qS~~~~~~~~l~~~ 164 (372)
T 3a04_A 136 MIALGLDPKD--TEFYFQTNRGTPYFRLIQL 164 (372)
T ss_dssp HHHHTCCTTT--CEEEEGGGSCHHHHHHHHH
T ss_pred HHHcCCChHH--cchhhhccchHHHHHHHHH
Confidence 7778999975 2377899877666665543
No 138
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=92.95 E-value=0.098 Score=57.26 Aligned_cols=75 Identities=27% Similarity=0.423 Sum_probs=49.7
Q ss_pred EEECCCCC-CcCchhHHHHHH-HHHHHHHhcCCEEEEEeeCC-----C---cccccHHHHHHHHHHHHHcCCCCCCCCCc
Q psy9410 21 TRFAPEPN-GYLHIGHAKSIF-INFELAYKYNGLCNLRFDDT-----N---PLKENKEYVNSIIKTIKWLNFNWDKVKKR 90 (736)
Q Consensus 21 ~RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilR~eDt-----d---~~r~~~~~~~~i~~dl~wLGi~~d~gp~~ 90 (736)
+-..=.|| |.|||||.-.++ ++| +.+.++..+++-|.|- . ......+....+..++-.+|++++. ..
T Consensus 94 vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpek--t~ 170 (451)
T 3foc_A 94 IYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDK--TF 170 (451)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG--EE
T ss_pred EEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCc--eE
Confidence 33334567 889999999888 777 6666778888888874 1 1122345555666666667988754 13
Q ss_pred cccccccH
Q psy9410 91 IYYASDYF 98 (736)
Q Consensus 91 ~~~~Se~~ 98 (736)
++.||+.+
T Consensus 171 i~~nSd~~ 178 (451)
T 3foc_A 171 IFINSQYL 178 (451)
T ss_dssp EEEHHHHT
T ss_pred EEeCchhh
Confidence 56777765
No 139
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=92.91 E-value=0.042 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=20.6
Q ss_pred eecccCccCccchhhcCccCceeec
Q psy9410 632 TIFSKLCTGCDLCIKKCPVNCISMI 656 (736)
Q Consensus 632 ~~~~~~C~~Cg~Cv~~CP~~Ai~~~ 656 (736)
.++..+|++||.|+.+||. +|.+.
T Consensus 5 ~id~~~C~~C~~C~~~Cp~-~~~~~ 28 (66)
T 1sj1_A 5 SVDQDTCIGDAICASLCPD-VFEMN 28 (66)
T ss_dssp EECTTTCCCCCHHHHHCTT-TEEEC
T ss_pred EECcccCcCchHHHHhCCc-eEEEC
Confidence 4677899999999999995 88874
No 140
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=92.67 E-value=0.14 Score=55.27 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=49.8
Q ss_pred CCCC-CcCchhHHHHHH-HHHHHHHhcCCEEEEEeeCCC--------cccccHHHHHHHHHHHHHcCCCCCCCCCccccc
Q psy9410 25 PEPN-GYLHIGHAKSIF-INFELAYKYNGLCNLRFDDTN--------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94 (736)
Q Consensus 25 P~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilR~eDtd--------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~ 94 (736)
=.|| |.|||||.-.++ ++| +.+.++..+++-|.|-. ......++...+..++..+|++++. ..++.|
T Consensus 81 ~~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~k--t~i~~n 157 (393)
T 3hv0_A 81 RGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPEL--TFIFTN 157 (393)
T ss_dssp ECCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTT--EEEEEH
T ss_pred CCCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcc--eEEEEC
Confidence 3467 689999999998 666 66666777888887742 1112345555677777778998764 135567
Q ss_pred cccHHHH
Q psy9410 95 SDYFDIL 101 (736)
Q Consensus 95 Se~~~~~ 101 (736)
|+....|
T Consensus 158 s~~~~~~ 164 (393)
T 3hv0_A 158 LEYIAEL 164 (393)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7776544
No 141
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=92.21 E-value=0.29 Score=52.73 Aligned_cols=87 Identities=24% Similarity=0.397 Sum_probs=57.0
Q ss_pred CCCcE-EEECCCCCCcCchhHHHHHH-HHHHHHHhcCCEEEEEeeCC-----Cc---ccccHHHHHHHHHHHHHcCCCCC
Q psy9410 16 LPQVI-TRFAPEPNGYLHIGHAKSIF-INFELAYKYNGLCNLRFDDT-----NP---LKENKEYVNSIIKTIKWLNFNWD 85 (736)
Q Consensus 16 ~~~~v-~RfaP~PtG~lHiGhar~al-~n~~~Ar~~~G~~ilR~eDt-----d~---~r~~~~~~~~i~~dl~wLGi~~d 85 (736)
.|-.| +=|.| ||.|||||.-.++ .+| +...+|...++=|.|. ++ .....+....+..++..+|++++
T Consensus 72 ~p~~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 72 RGFFLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp CCCEEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 34345 56665 5999999999886 677 5555777666656553 11 12234555666777778899987
Q ss_pred CCCCccccccccHHHHHHHHHHH
Q psy9410 86 KVKKRIYYASDYFDILYKIAEYL 108 (736)
Q Consensus 86 ~gp~~~~~~Se~~~~~~~~a~~L 108 (736)
. ..+++||+..+ |.+.+-.|
T Consensus 149 k--t~i~~qS~~~~-~~~~~~~l 168 (392)
T 3jxe_A 149 K--TFIFQNSEFTK-IYEMAIPI 168 (392)
T ss_dssp S--EEEEETTTSTH-HHHHHHHH
T ss_pred c--eEEEECchhHH-HHHHHHHH
Confidence 4 23678999887 66655555
No 142
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=91.02 E-value=0.081 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=23.2
Q ss_pred ccceeccccccCcchhHhhCccccccc
Q psy9410 599 CCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 599 ~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
..+.+|.+.|++||.|+.+||..+...
T Consensus 294 ~~l~Id~~~C~~Cg~Ci~~CP~al~~~ 320 (437)
T 3or1_A 294 GTLSIDNKNCTRCMHCINTMPRALKIG 320 (437)
T ss_dssp TEEEECGGGCCCCSHHHHHCTTTEECC
T ss_pred CEEEEccccCCchhhhHhhCcHhhccC
Confidence 358899999999999999999976643
No 143
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=90.99 E-value=0.31 Score=58.10 Aligned_cols=50 Identities=22% Similarity=0.108 Sum_probs=42.7
Q ss_pred ecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 267 ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 267 klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
|||||++|.+ ++.++.++ |.++++|.|++..+...++..++.+.++...+
T Consensus 639 KMSKSkGNvV---------------dP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a~r 688 (880)
T 4arc_A 639 KMSKSKNNGI---------------DPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGANR 688 (880)
T ss_dssp ECCTTTTCCC---------------CHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH
T ss_pred cccCcCCCCC---------------CHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHHHH
Confidence 9999998754 78888887 99999999999998888888888888776554
No 144
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=90.87 E-value=0.31 Score=52.42 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-------CcccccHHHHHHHHHHHHHcCCCCCCCCCcccccccc
Q psy9410 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-------NPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDY 97 (736)
Q Consensus 25 P~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-------d~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~ 97 (736)
=.|||.|||||.-.++.++..-. .+...++=|.|. +++ ...+....+..++..+|++++. ..+++||+.
T Consensus 42 ~~PTG~lHLGhyvGal~~~~~LQ-~~~~~~~~IaD~hAlt~~~~~~-~lr~~~~~~aa~~lA~GlDp~k--t~if~qS~v 117 (388)
T 3prh_A 42 IQPSGSVTLGNYIGAMKQFVELQ-HDYNSYFCIVDQHAITVPQDRL-ELRKNIRNLAALYLAVGLDPEK--ATLFIQSEV 117 (388)
T ss_dssp ECCCSCCBHHHHHHTHHHHHHTT-TTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTT--EEEEEGGGS
T ss_pred eCCCCcchHHHHHHHHHHHHHHH-ccCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHhCCChhH--eEEEecccc
Confidence 35779999999998888775433 355666656553 222 2345556667777778999875 236789997
Q ss_pred HHHHHHH
Q psy9410 98 FDILYKI 104 (736)
Q Consensus 98 ~~~~~~~ 104 (736)
.+ +.++
T Consensus 118 ~~-~~el 123 (388)
T 3prh_A 118 PA-HAQA 123 (388)
T ss_dssp TH-HHHH
T ss_pred cc-hHHH
Confidence 64 3443
No 145
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=90.25 E-value=0.54 Score=56.24 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=43.1
Q ss_pred eecchhhhhhhhhccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHcCcccCCccccHHHHHHHHh
Q psy9410 266 TITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 332 (736)
Q Consensus 266 ~klSKr~~~~~v~~~~~~gwddpr~~tl~~l~~~G~~peai~~~~~~~g~s~~~~~~~~~~l~~~~~ 332 (736)
.|||||++|.+ +..++.++ |.++++|.|++..+....+..++.+.+....+
T Consensus 636 ~KMSKSkGNvV---------------dP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~ 686 (878)
T 2v0c_A 636 AVMSKSKGNGV---------------MVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGAWR 686 (878)
T ss_dssp EECSGGGTCCC---------------BHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred HHhhccCCCcc---------------cHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHHHH
Confidence 89999998654 78888887 99999999999888888888898888766543
No 146
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=90.01 E-value=0.23 Score=53.73 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred EECCCCCC-cCchhHHHHH-HHHHHHHHhcCCEEEEEeeCCC-----c--ccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 22 RFAPEPNG-YLHIGHAKSI-FINFELAYKYNGLCNLRFDDTN-----P--LKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 22 RfaP~PtG-~lHiGhar~a-l~n~~~Ar~~~G~~ilR~eDtd-----~--~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
-..=.||| .|||||.-.+ +++| +.+.+|..+++-|.|.. + .....++...+..++-.+|++++. ..++
T Consensus 105 y~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k--~~i~ 181 (406)
T 3tze_A 105 YTGRGPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKL--TYIF 181 (406)
T ss_dssp EEEECCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG--EEEE
T ss_pred EEeeCCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccc--eEEE
Confidence 33446788 7999999998 6677 66667888888787742 1 122345556667777778998764 1244
Q ss_pred cccccHH
Q psy9410 93 YASDYFD 99 (736)
Q Consensus 93 ~~Se~~~ 99 (736)
.||+..+
T Consensus 182 ~qs~~~~ 188 (406)
T 3tze_A 182 SNVEASH 188 (406)
T ss_dssp EHHHHGG
T ss_pred eccHhHH
Confidence 5555443
No 147
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=89.84 E-value=0.39 Score=50.82 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC----Ccc--cccHHHHHHHHHHHHHcCCCCCCCCCccccccccHH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT----NPL--KENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFD 99 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt----d~~--r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~~ 99 (736)
.|||.|||||.-.++-+|..-.. +.+.++=|.|. ++. ....+....+..++-.+|++++. ..+++||+..+
T Consensus 14 ~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k--~~i~~qS~v~~ 90 (341)
T 3sz3_A 14 QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKK--STLFVQSHVPE 90 (341)
T ss_dssp CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTT--SEEEEGGGCTH
T ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhh--cEEEeccchhh
Confidence 46799999999988866642222 24555555443 111 22345566677777788999875 24778999764
No 148
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=89.41 E-value=0.2 Score=54.12 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=48.3
Q ss_pred EEECCCCCC-cCchhHHHHH-HHHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCcc
Q psy9410 21 TRFAPEPNG-YLHIGHAKSI-FINFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRI 91 (736)
Q Consensus 21 ~RfaP~PtG-~lHiGhar~a-l~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~ 91 (736)
+-..=.||| .|||||.-.+ +++| +.+.++..+++-|.|-. ......++...+..++-.+|++++. ..+
T Consensus 81 vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k--t~i 157 (395)
T 3i05_A 81 LYTGRGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPEL--TFI 157 (395)
T ss_dssp EEEEECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTS--EEE
T ss_pred EEEeecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCc--eEE
Confidence 333446788 7999999988 5666 66666777777776641 2222445556677777778998865 124
Q ss_pred ccccccH
Q psy9410 92 YYASDYF 98 (736)
Q Consensus 92 ~~~Se~~ 98 (736)
..+|+..
T Consensus 158 ~~ns~~~ 164 (395)
T 3i05_A 158 FRDFDYM 164 (395)
T ss_dssp EEHHHHT
T ss_pred EEcCHHH
Confidence 4555543
No 149
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=88.60 E-value=0.46 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-------CcccccHHHHHHHHHHHHHcCCCCCCCCCccccccccH
Q psy9410 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-------NPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYF 98 (736)
Q Consensus 26 ~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-------d~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~Se~~ 98 (736)
.|||.|||||.-.++-+|.- -+.+.+.++=|.|. |++ ...+....+..++..+|++++. ..+++||+..
T Consensus 23 ~PTG~lHLGh~vg~l~~~~~-lQ~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k--~~if~qS~v~ 98 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQWVQ-MQDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKK--STIFVQSHVP 98 (346)
T ss_dssp CSCSCCBHHHHHHTHHHHHT-TTTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTT--SEEEEGGGCT
T ss_pred CCCCcccHHHHHHHHHHHHH-HHhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccc--eEEEeccccc
Confidence 56799999999888876642 22345555555543 222 2345556667777778999875 2377899876
Q ss_pred H
Q psy9410 99 D 99 (736)
Q Consensus 99 ~ 99 (736)
+
T Consensus 99 ~ 99 (346)
T 3n9i_A 99 E 99 (346)
T ss_dssp H
T ss_pred c
Confidence 5
No 150
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=88.34 E-value=0.074 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceeccccccCcchhHhhCccccccccc
Q psy9410 601 AIIKENKCIGCTLCIQSCPVDAIIGAA 627 (736)
Q Consensus 601 ~~~d~~~Ci~Cg~C~~~CP~~ai~~~~ 627 (736)
+..+..+|++||.|+.+|| +++....
T Consensus 196 v~~d~~~C~~C~~C~~vCp-~aI~~~~ 221 (265)
T 2pa8_D 196 SVKNELSCTLCEECLRYCN-GSIRISF 221 (265)
T ss_dssp EESCGGGCCCCCHHHHHHT-TSEEEEE
T ss_pred EEeccccCCCchHHHHhCC-CceEEEe
Confidence 4557889999999999999 8887643
No 151
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.98 E-value=0.17 Score=58.08 Aligned_cols=28 Identities=39% Similarity=0.931 Sum_probs=24.9
Q ss_pred cccceeccccccCcchhHhhCccccccc
Q psy9410 598 RCCAIIKENKCIGCTLCIQSCPVDAIIG 625 (736)
Q Consensus 598 ~~~~~~d~~~Ci~Cg~C~~~CP~~ai~~ 625 (736)
.+...+.++.|+|||.|++.||+.+|.+
T Consensus 59 ~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 59 NYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred CCcceeeecccCccccccCCCCcceEEE
Confidence 4667889999999999999999998875
No 152
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=87.91 E-value=0.54 Score=51.34 Aligned_cols=78 Identities=17% Similarity=0.338 Sum_probs=49.3
Q ss_pred CCCC-CcCchhHHHHHH-HHHHHHHhcCCEEEEEeeC----C-Cc---ccccHHHHHHHHHHHHHcCCCCCCCCCccccc
Q psy9410 25 PEPN-GYLHIGHAKSIF-INFELAYKYNGLCNLRFDD----T-NP---LKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94 (736)
Q Consensus 25 P~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilR~eD----t-d~---~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~~ 94 (736)
=-|| |.|||||.-.++ +++ +...+|...++=|.| + |+ .....+....+..++-.+|++++. ..+++|
T Consensus 109 ~dPTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k--~~i~~n 185 (432)
T 2ip1_A 109 RGPSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKN--TFIFSD 185 (432)
T ss_dssp ECCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG--EEEEEH
T ss_pred ecCCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEeC
Confidence 3567 789999999877 565 455577776666766 2 12 122345555666677777988763 136788
Q ss_pred cccH-HHHHHHH
Q psy9410 95 SDYF-DILYKIA 105 (736)
Q Consensus 95 Se~~-~~~~~~a 105 (736)
|+.. ..+.+.+
T Consensus 186 Sd~~~~~~~~~~ 197 (432)
T 2ip1_A 186 LQYMGGAFYETV 197 (432)
T ss_dssp HHHCSHHHHHHH
T ss_pred chhhhhhHHHHH
Confidence 8875 2344433
No 153
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=87.60 E-value=0.68 Score=49.12 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=48.0
Q ss_pred EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-----Cc----ccccHHHHHHHHHHHHHcCCCCCCCCCcc
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-----NP----LKENKEYVNSIIKTIKWLNFNWDKVKKRI 91 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-----d~----~r~~~~~~~~i~~dl~wLGi~~d~gp~~~ 91 (736)
+=|- |||.|||||.-.++.++..-...|.+.+.=+.|. |+ .....+....+..++-.+|++++. ...
T Consensus 45 ~G~~--PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k--~~i 120 (348)
T 2j5b_A 45 NGFE--PSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG--TRF 120 (348)
T ss_dssp EEEC--CCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG--EEE
T ss_pred eccC--CCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc--eEE
Confidence 5554 5599999996666666665555667777777552 23 122345556677777778999864 126
Q ss_pred ccccccH
Q psy9410 92 YYASDYF 98 (736)
Q Consensus 92 ~~~Se~~ 98 (736)
.+||+.+
T Consensus 121 ~~qs~~~ 127 (348)
T 2j5b_A 121 IWASEFI 127 (348)
T ss_dssp EEHHHHH
T ss_pred EECCHhh
Confidence 7788853
No 154
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=87.43 E-value=0.54 Score=50.42 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=52.7
Q ss_pred cE-EEECCCCCCcCchhHHHHHHHHHHHHHhcCCEEEEEeeCC-----Ccc-cc---cHHHH-HHHH----HHHHHcCCC
Q psy9410 19 VI-TRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDT-----NPL-KE---NKEYV-NSII----KTIKWLNFN 83 (736)
Q Consensus 19 ~v-~RfaP~PtG~lHiGhar~al~n~~~Ar~~~G~~ilR~eDt-----d~~-r~---~~~~~-~~i~----~dl~wLGi~ 83 (736)
.| +=|- |||.|||||.-.++.++..-...|.+.++=|.|. |+. +. ..+.. ..+. .++..+|++
T Consensus 35 ~vy~G~~--PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 35 QHYIGFE--ISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp BEEEEEC--CCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred EEEeCCC--CCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45 5555 5589999996667777776666677777767652 221 11 12222 3333 778889998
Q ss_pred CCCCCCccccccccHHHHHHHHHHHHH
Q psy9410 84 WDKVKKRIYYASDYFDILYKIAEYLII 110 (736)
Q Consensus 84 ~d~gp~~~~~~Se~~~~~~~~a~~Li~ 110 (736)
++. ....+||+..... .+...++.
T Consensus 113 p~k--~~i~~qS~~~~~~-~~~~~~~~ 136 (375)
T 2cyc_A 113 PKK--VEFVLASEILEKG-DYWQTVID 136 (375)
T ss_dssp GGG--SEEEETHHHHTBH-HHHHHHHH
T ss_pred ccc--eEEEEcchhhhhh-HHHHHHHH
Confidence 864 1377888876543 33333343
No 155
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=85.73 E-value=2.5 Score=48.85 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=54.4
Q ss_pred EEECCCCCCcCchhHHHHHHH--HHHHHHhcCCEEEEEeeCCC-----c----ccccHHHHHHHHHHHHHcCCCCCCCCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFI--NFELAYKYNGLCNLRFDDTN-----P----LKENKEYVNSIIKTIKWLNFNWDKVKK 89 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~--n~~~Ar~~~G~~ilR~eDtd-----~----~r~~~~~~~~i~~dl~wLGi~~d~gp~ 89 (736)
+-|-| +||.|||||+-..+. +.+.-...|+..++=|.|.- + ......+......++..||++...
T Consensus 385 ~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~--- 460 (690)
T 3p0j_A 385 CMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSV--- 460 (690)
T ss_dssp EEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTS---
T ss_pred EEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCe---
Confidence 77889 999999999998875 55555556889888887762 2 122345556667778899997533
Q ss_pred ccccccccHH
Q psy9410 90 RIYYASDYFD 99 (736)
Q Consensus 90 ~~~~~Se~~~ 99 (736)
..+++|+...
T Consensus 461 ~fv~~S~~~~ 470 (690)
T 3p0j_A 461 KIVTENEVIL 470 (690)
T ss_dssp EEEEHHHHHH
T ss_pred EEEECCchhc
Confidence 4888888653
No 156
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=85.37 E-value=0.21 Score=58.92 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=18.9
Q ss_pred eccccccCcchhHhhCcccccc
Q psy9410 603 IKENKCIGCTLCIQSCPVDAII 624 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~~ai~ 624 (736)
.+.+.|+.||.|+.+||.++..
T Consensus 450 ~~~~~Ci~Cg~C~~vCP~ga~~ 471 (807)
T 3cf4_A 450 EIHDTCIGCRRCEQVCKKEIPI 471 (807)
T ss_dssp HHHHHCCCCCHHHHHCTTCCCH
T ss_pred hchhhccchhhHHHhCCCCCCh
Confidence 3457899999999999998774
No 157
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=84.58 E-value=0.75 Score=50.87 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=47.3
Q ss_pred ECCCCC-CcCchhHHHHHH-HHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCcccc
Q psy9410 23 FAPEPN-GYLHIGHAKSIF-INFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIYY 93 (736)
Q Consensus 23 faP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~~ 93 (736)
..=-|| |.|||||.-.++ ++| +.+.+|...++=|.|.. ......++...+..++-.+|++++. ..++.
T Consensus 160 ~G~dPTag~LHLGh~v~~~~~~~-lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k--~~i~~ 236 (477)
T 1r6t_A 160 TGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK--TFIFS 236 (477)
T ss_dssp EEECCCTTCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS--EEEEE
T ss_pred EcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEe
Confidence 334567 889999999987 565 55557776666564421 1223445555666777778998764 13667
Q ss_pred ccccHH
Q psy9410 94 ASDYFD 99 (736)
Q Consensus 94 ~Se~~~ 99 (736)
||+...
T Consensus 237 nsd~~~ 242 (477)
T 1r6t_A 237 DLDYMG 242 (477)
T ss_dssp HHHHGG
T ss_pred chhhhc
Confidence 787654
No 158
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=82.93 E-value=0.86 Score=49.76 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=47.3
Q ss_pred EECCCCC-CcCchhHHHHHH-HHHHHHHhcCCEEEEEeeCCC-------cccccHHHHHHHHHHHHHcCCCCCCCCCccc
Q psy9410 22 RFAPEPN-GYLHIGHAKSIF-INFELAYKYNGLCNLRFDDTN-------PLKENKEYVNSIIKTIKWLNFNWDKVKKRIY 92 (736)
Q Consensus 22 RfaP~Pt-G~lHiGhar~al-~n~~~Ar~~~G~~ilR~eDtd-------~~r~~~~~~~~i~~dl~wLGi~~d~gp~~~~ 92 (736)
-..=-|| |.|||||.-.++ +++ +...+|...++=|.|-. ......+....+..++-.+|++++. ..++
T Consensus 112 y~G~dPTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k--t~i~ 188 (437)
T 1r6u_A 112 YTGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK--TFIF 188 (437)
T ss_dssp EEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG--EEEE
T ss_pred EEcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc--eEEE
Confidence 3334567 889999999987 454 55547777666665421 1223445555566676678988764 1366
Q ss_pred cccccHH
Q psy9410 93 YASDYFD 99 (736)
Q Consensus 93 ~~Se~~~ 99 (736)
.||+...
T Consensus 189 ~nSd~~~ 195 (437)
T 1r6u_A 189 SDLDYMG 195 (437)
T ss_dssp EHHHHGG
T ss_pred echhhhh
Confidence 7788654
No 159
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=80.26 E-value=3.4 Score=44.13 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=41.7
Q ss_pred EEECCCCCCcCchhHHHHHHHH--HHHHHhcCCEEEEEeeCC-----Ccc-c---ccHHHHHHHHHHHHHcCCCCCCCCC
Q psy9410 21 TRFAPEPNGYLHIGHAKSIFIN--FELAYKYNGLCNLRFDDT-----NPL-K---ENKEYVNSIIKTIKWLNFNWDKVKK 89 (736)
Q Consensus 21 ~RfaP~PtG~lHiGhar~al~n--~~~Ar~~~G~~ilR~eDt-----d~~-r---~~~~~~~~i~~dl~wLGi~~d~gp~ 89 (736)
+=|. |||.|||||. ++.+ +..-...|...++=|-|. |+. + ........+..++..+|++++. .
T Consensus 61 ~G~~--PTg~lHlG~g--vl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k--~ 134 (373)
T 3vgj_A 61 DGFE--PSGRMHIAQG--LLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN--V 134 (373)
T ss_dssp EEEC--CCSSCBHHHH--HHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT--E
T ss_pred eCCC--CCCCceehhh--HHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh--e
Confidence 4454 5689999993 3332 222234566766666552 221 1 1234445566778889999864 1
Q ss_pred ccccccccH
Q psy9410 90 RIYYASDYF 98 (736)
Q Consensus 90 ~~~~~Se~~ 98 (736)
...+||+..
T Consensus 135 ~i~~~S~~~ 143 (373)
T 3vgj_A 135 QFLWASEEI 143 (373)
T ss_dssp EEEEHHHHH
T ss_pred EEEeChhHH
Confidence 366788876
No 160
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=78.01 E-value=0.68 Score=47.52 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.7
Q ss_pred cccccCcchhHhhCcccc
Q psy9410 605 ENKCIGCTLCIQSCPVDA 622 (736)
Q Consensus 605 ~~~Ci~Cg~C~~~CP~~a 622 (736)
-..|..||.|..+||.+.
T Consensus 236 l~~C~~Cg~C~~vCP~gI 253 (282)
T 3vr8_B 236 AFKCHTIMNCTKTCPKHL 253 (282)
T ss_pred cccChhhCCccccCcCCC
Confidence 357999999999999864
No 161
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=74.36 E-value=1 Score=44.95 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.1
Q ss_pred ccccccCcchhHhhCcccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAII 624 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai~ 624 (736)
+...|+.||.|+.+||.++..
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~ 222 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNP 222 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCcCcccchhhhhcCCCCCH
Confidence 567899999999999998654
No 162
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=72.42 E-value=1.1 Score=44.70 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.1
Q ss_pred ccccccCcchhHhhCccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai 623 (736)
+...|+.||.|+.+||.++.
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi~ 219 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHVD 219 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCCC
T ss_pred CcccCcccCCcchhCCCCCC
Confidence 45789999999999999743
No 163
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=70.86 E-value=7 Score=42.40 Aligned_cols=51 Identities=4% Similarity=-0.135 Sum_probs=31.3
Q ss_pred ccceeeccccccCchhHHHHHHhhc-ccCCcCCCCCCceEEEEee-ecCCeecchhhhh
Q psy9410 218 NITHSICTLEFQDHRPFYEWILNKI-DKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 274 (736)
Q Consensus 218 githvirg~e~~~~~~~~~~l~~~l-~~~~~~~~~~p~~~~f~~l-~~~g~klSKr~~~ 274 (736)
+.++++-|.|-..|...=.-+.+.+ +. .+|..+....| .++|+||||+.++
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------~~~~~l~~pll~~ldG~KMSKS~~n 238 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYGQ------TDAYGLTIPLVTKSDGKKFGKSESG 238 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCC------CCCEEEEECCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCC------CCeeEeecccccCCccccccCCCCC
Confidence 6777888877666665555566666 53 23322222222 4589999999854
No 164
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=67.23 E-value=2.6 Score=44.17 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=24.8
Q ss_pred CCCCCCc-CchhHHHHHHHHHHHHHhcCCEEEEEeeC
Q psy9410 24 APEPNGY-LHIGHAKSIFINFELAYKYNGLCNLRFDD 59 (736)
Q Consensus 24 aP~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilR~eD 59 (736)
.=.|||. |||||.- ++.++..-...|.+.+.=+-|
T Consensus 39 G~~PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D 74 (322)
T 2yxn_A 39 GFDPTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGG 74 (322)
T ss_dssp EECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECT
T ss_pred eecCCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEcc
Confidence 3456799 9999988 677666666666766666655
No 165
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=66.25 E-value=9 Score=44.27 Aligned_cols=59 Identities=12% Similarity=-0.039 Sum_probs=35.7
Q ss_pred cchhhhccccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEee-ec-CCe-ecchhhh
Q psy9410 210 HPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NL-THT-ITSKRKL 273 (736)
Q Consensus 210 ~~vdD~~~githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l-~~-~g~-klSKr~~ 273 (736)
.+.|-.+.+.+++.-|.|-..|...-.-+.+.++. ...|.......| .+ +|+ |||||..
T Consensus 175 QAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~-----~~~p~~l~~~~l~gL~dG~~KMSKS~~ 236 (690)
T 3p0j_A 175 QCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGR-----KLKPVILSHHMLAGLKQGQAKMSKSDP 236 (690)
T ss_dssp HHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTC-----CCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred HHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCC-----CCCceEeecCeeecCCCCCcCCCCCCC
Confidence 34444456788898897766666555666667764 112433322223 34 675 9999986
No 166
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=63.23 E-value=2.4 Score=42.65 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=16.8
Q ss_pred ccccccCcchhHhhCccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai 623 (736)
....|+.||.|+.+||.++-
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i~ 230 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGLN 230 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCCC
T ss_pred CCCcCccccchhhhcCCCCC
Confidence 34689999999999998743
No 167
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=63.22 E-value=8.4 Score=41.87 Aligned_cols=51 Identities=8% Similarity=-0.195 Sum_probs=31.9
Q ss_pred ccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEee-ecCCeecchhhhh
Q psy9410 218 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 274 (736)
Q Consensus 218 githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l-~~~g~klSKr~~~ 274 (736)
+.++++-|.|-..|...=.-+.+.++. .+|..+....| .++|+||||+.++
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------ATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------CCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------CCccccccccccCCCcCcCCCCCCC
Confidence 788888887766666655556666663 22322211112 4589999999865
No 168
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=62.24 E-value=2.5 Score=42.09 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=17.0
Q ss_pred ccccccCcchhHhhCccccc
Q psy9410 604 KENKCIGCTLCIQSCPVDAI 623 (736)
Q Consensus 604 d~~~Ci~Cg~C~~~CP~~ai 623 (736)
....|+.||.|+.+||.+.-
T Consensus 204 ~~~~C~~Cg~C~~vCP~~i~ 223 (241)
T 2bs2_B 204 GVFGCMTLLACHDVCPKNLP 223 (241)
T ss_dssp TGGGCCCCCHHHHHCTTCCC
T ss_pred CcccCcccChhhHhcCCCCC
Confidence 45689999999999998743
No 169
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=47.10 E-value=14 Score=39.52 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=24.3
Q ss_pred EECCCCCCc-CchhHHHHHHHHHHHHHhcCCEEEEEeeC
Q psy9410 22 RFAPEPNGY-LHIGHAKSIFINFELAYKYNGLCNLRFDD 59 (736)
Q Consensus 22 RfaP~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilR~eD 59 (736)
-..=-|||. |||||.- ++.++..-...|.+.+.=|-|
T Consensus 68 y~G~dPTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 68 YVGIDPTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp EEEECCCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred EEeecCCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 333457799 9999998 566665555556666555544
No 170
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=46.01 E-value=17 Score=39.37 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=25.0
Q ss_pred ECCCCCCc-CchhHHHHHHHHHHHHHhcCCEEEEEeeC
Q psy9410 23 FAPEPNGY-LHIGHAKSIFINFELAYKYNGLCNLRFDD 59 (736)
Q Consensus 23 faP~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilR~eD 59 (736)
..=-|||. |||||.- ++.++..-+..|.+.+.=|-|
T Consensus 35 ~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgd 71 (419)
T 2ts1_A 35 CGFDPTADSLHIGHLA-TILTMRRFQQAGHRPIALVGG 71 (419)
T ss_dssp EEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECT
T ss_pred EeeCCCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcC
Confidence 33457798 9999988 566666555566676666655
No 171
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=45.18 E-value=18 Score=38.13 Aligned_cols=51 Identities=8% Similarity=-0.184 Sum_probs=23.2
Q ss_pred ccceeeccccccCchhHHHHHHhhcccCCcCCCCCCceEEEEee-ecCCeecchhhhh
Q psy9410 218 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 274 (736)
Q Consensus 218 githvirg~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~f~~l-~~~g~klSKr~~~ 274 (736)
+.++++-|.|-..|...=.-+.+.++. .+|..+....| .++|+|||||.++
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~------~~~~~l~~pll~~ldG~KMSKS~~n 261 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTG------EDVFGITVPLITSTTGAKLGKSAGN 261 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSS------CCCEEEEECCCC-------------
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------CCccccccccccCCCcccccCCCCC
Confidence 788888898877776666666677764 33433222222 4579999999754
No 172
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=23.56 E-value=13 Score=44.56 Aligned_cols=18 Identities=33% Similarity=1.032 Sum_probs=13.6
Q ss_pred cccCc------chhHhhCcccccc
Q psy9410 607 KCIGC------TLCIQSCPVDAII 624 (736)
Q Consensus 607 ~Ci~C------g~C~~~CP~~ai~ 624 (736)
.|..| |.|+..||.+-..
T Consensus 224 ~C~~C~~~~~~~~Cv~~Cp~~~y~ 247 (897)
T 2dtg_E 224 KCVACRNFYLDGRCVETCPPPYYH 247 (897)
T ss_dssp GEECCSSCBBTTBCCSSCCSSCCC
T ss_pred ceeECccCccCCcchhhcCCceeE
Confidence 48888 7899999976443
No 173
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=23.18 E-value=15 Score=40.46 Aligned_cols=17 Identities=29% Similarity=1.210 Sum_probs=11.6
Q ss_pred cccCc------chhHhhCccccc
Q psy9410 607 KCIGC------TLCIQSCPVDAI 623 (736)
Q Consensus 607 ~Ci~C------g~C~~~CP~~ai 623 (736)
.|..| |.|+..||.+..
T Consensus 217 ~C~aC~~~~~~g~Cv~~CP~~~y 239 (478)
T 1igr_A 217 ACVACRHYYYAGVCVPACPPNTY 239 (478)
T ss_dssp SEEEESSEECSSSEESSCCTTCE
T ss_pred ceeeeeeeccCCcCcccCCCcee
Confidence 37766 678888886543
No 174
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=21.89 E-value=64 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=25.6
Q ss_pred EEECCCCCCc-CchhHHHHHHHHHHHHHhcCCEEEEEeeC
Q psy9410 21 TRFAPEPNGY-LHIGHAKSIFINFELAYKYNGLCNLRFDD 59 (736)
Q Consensus 21 ~RfaP~PtG~-lHiGhar~al~n~~~Ar~~~G~~ilR~eD 59 (736)
+-..=-|||. |||||+- ++.++..-...|.+.++=|-|
T Consensus 49 vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD 87 (356)
T 2pid_A 49 IYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGG 87 (356)
T ss_dssp EEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECT
T ss_pred EEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEcc
Confidence 3344467796 9999944 777766666666676666655
No 175
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=20.19 E-value=28 Score=32.46 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=14.4
Q ss_pred eccccccCcchhHhhCcc
Q psy9410 603 IKENKCIGCTLCIQSCPV 620 (736)
Q Consensus 603 ~d~~~Ci~Cg~C~~~CP~ 620 (736)
.+-.+|++|+.|+++|-.
T Consensus 139 gnlcRCt~y~~~v~A~~~ 156 (168)
T 1t3q_A 139 GNLCRCTGYETIIDAITD 156 (168)
T ss_dssp GSCCSSSCSHHHHHHHTC
T ss_pred CCcccCCCchHHHHHHHH
Confidence 456689999999999864
Done!