RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9410
(736 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 796 bits (2057), Expect = 0.0
Identities = 253/519 (48%), Positives = 327/519 (63%), Gaps = 21/519 (4%)
Query: 14 NKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSI 73
K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EYV SI
Sbjct: 22 GKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESI 81
Query: 74 IKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG L +
Sbjct: 82 KNDVEWLGFHWSG---NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQ 138
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNH 193
PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+ H
Sbjct: 139 PGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEH 198
Query: 194 YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253
++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ I P
Sbjct: 199 HQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP-----VHP 253
Query: 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 313
+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ FCKRI
Sbjct: 254 RQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRI 313
Query: 314 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQH 373
GV+K D+ I + LE +R+DL+ APR MAV++P+KL+I N+ + T P +
Sbjct: 314 GVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENY-QGEGEMVTMPNHPNKP 372
Query: 374 TQYKEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFK 433
+ R P S +WI+R DF E K+Y RL G VRLR YV++ +
Sbjct: 373 ---EMGSRQVPFSGEIWIDRADFREEANKQYKRLVL------GKEVRLRNAYVIKAERVE 423
Query: 434 KNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPN 493
K+ + ++C Y D+ S + KVKG IHW+S +HAL +E RLYDRLF P P
Sbjct: 424 KDAEGNITTIFCTYDADTLSK-DPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPG 482
Query: 494 IVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFE 532
DF +INP S + + EP+LK K QFE
Sbjct: 483 --AADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFE 519
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 782 bits (2022), Expect = 0.0
Identities = 219/559 (39%), Positives = 315/559 (56%), Gaps = 63/559 (11%)
Query: 14 NKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSI 73
K P+V+TRF P+P+GY H+GH + ++F A +Y G NLR DDTNP +EYV+SI
Sbjct: 62 GKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSI 121
Query: 74 IKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
+KWL +W + YYASDYFD Y AE LI GDAYV+S + EE+ RGN
Sbjct: 122 ADDLKWLGLDWGE---HFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATT 178
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNH 193
PG SP+ +R E+L+L RRM++GEF DG HVLR KI++ + N+ +RDP++YRI + H
Sbjct: 179 PGTPSPYRDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPH 238
Query: 194 YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253
+RT++ W IYP YD+ HP+ DAIE +THS+C+LEF D+R Y+W++ K++ P P
Sbjct: 239 FRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFD-----PRP 293
Query: 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 313
QYEF R L +TITSKRKL +L++ V GWDDPRMPTL RR G TPE+++ F +I
Sbjct: 294 HQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQI 353
Query: 314 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIEC--------- 364
GVS+++ ++I + E A+RDDL+ +APR+MAVL+P+K+ ++N + +
Sbjct: 354 GVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVR 413
Query: 365 ---TAPLFSRQHTQYKEKL--RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRV 419
+ + + R P+++ L+IERDDF P K + RL P G V
Sbjct: 414 DSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTP------GGTV 467
Query: 420 RLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIE 479
RLR ++ F ++ +V + + K G IHW+S AL E
Sbjct: 468 RLRGAGIIRADDFGTDEAGQVTHIRATLLGEDA---------KAAGVIHWVSAERALPAE 518
Query: 480 ARLYDRLFIDPYPN--------------------------IVNNKDFKLLINPNSKKVIS 513
RLYDRLF P+P ++ F + P+S +V+
Sbjct: 519 FRLYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLR 578
Query: 514 AYLEPNLKLIFPKKHAQFE 532
Y+EP++ QFE
Sbjct: 579 GYVEPSVAGDPADTRYQFE 597
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 658 bits (1699), Expect = 0.0
Identities = 124/520 (23%), Positives = 207/520 (39%), Gaps = 80/520 (15%)
Query: 14 NKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSI 73
+V+ RFAP P+G LHIGHA++ +N E A KY+G LR +DT+P + + E + I
Sbjct: 92 GVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMI 151
Query: 74 IKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
++WL WD+ SD + Y+ E LI G AYV + EE +
Sbjct: 152 PADLEWLGVEWDE----TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELK----N 203
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNH 193
G + E+L +R M E K+G+ V+RVK ++ N +RD + RI H
Sbjct: 204 RGEACHCRSLGFRENLQRWREMF--EMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEH 261
Query: 194 YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253
RT + +YPM +++ + D + +TH + + +R E++ + P
Sbjct: 262 PRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGW------EPP 315
Query: 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 313
+ + RL + S + + + GWDDPR+ TL + RRG PE+I+ I
Sbjct: 316 EFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEI 375
Query: 314 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQH 373
GV +DS ++ + + R L+ +A R +P+KL + +E PL H
Sbjct: 376 GVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVGLPGPVRVE--RPL----H 429
Query: 374 TQYKEK-LRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGF 432
+ E R + +++ DD E P +RL V +G
Sbjct: 430 PDHPEIGNRVLELRGEVYLPGDDLGEGP------------------LRLIDAVNVIYSG- 470
Query: 433 KKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYP 492
+ + + +++ IHW+ AL E + D +
Sbjct: 471 ------GELRYHSEGIEEARE--------LGASMIHWVPAESALEAEVIMPDASRVR--- 513
Query: 493 NIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFE 532
+E + + Q E
Sbjct: 514 ---------------------GVIEADASELEVDDVVQLE 532
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Length = 446
Score = 96.2 bits (239), Expect = 3e-21
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 534 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG 593
LP+ C +CG P C +A +A+ KA+ + CP L PI + G
Sbjct: 10 KQLPKKNCGECGTPTCLAFAMNLASGKASLDSCPYVSDAAREALDAAAAPPIAKVVLGAG 69
Query: 594 NEK----SRCCAIIKENKCIGCTLCIQSCPVD----AIIGAAKHMHTIFSKLCTGCDLCI 645
+ + T + + + ++ + G I
Sbjct: 70 PTAVEMGDETELFRHDKRFYHETAIAIQVSDNLSSEELKAKVEAING-LNFDRVGQHYTI 128
Query: 646 KKCPVNCIS 654
+ + +
Sbjct: 129 QAIAIRHDA 137
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B
AARS, ATP-dependen charging, protein synthesis,
structural genomics; HET: GLU; 2.05A {Burkholderia
thailandensis}
Length = 490
Score = 86.9 bits (216), Expect = 4e-18
Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
V TRFAP P G++H+G+ +S + A K G LR +DT+ + ++E V++I++ +
Sbjct: 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGM 84
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
WL ++D + YY D ++ + G Y +TEE+ R G
Sbjct: 85 AWLGLDYD---EGPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGE- 140
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKI--------------NMKSKNINMRDP 183
P Y+ ++ A VLR + ++ N + D
Sbjct: 141 KPRYDG---TWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDL 197
Query: 184 IIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSI 223
++ R + PMY++ + D ITH I
Sbjct: 198 VV--------ARPDG----TPMYNFCVVVDDLDMGITHVI 225
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 78.0 bits (192), Expect = 5e-18
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAII-------GAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
+ + CIGCT C+++CP D + A + + ++ C GC C CP + +
Sbjct: 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Query: 654 SMIEVTPCRT 663
S+ T
Sbjct: 63 SIRVYLGAET 72
Score = 42.9 bits (101), Expect = 1e-05
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 585 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
++ + G + + + + C+GC C +CP D +
Sbjct: 24 VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 637 LCTGCDLCIKKCPVNCISMIEVTPCRTG 664
C GC C++ CP + + M+ C+ G
Sbjct: 9 TCIGCTQCVRACPTDVLEMVPWDGCKAG 36
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
ATP-binding, nucleotide-B; HET: GLU; 2.45A
{Synechococcus elongatus}
Length = 492
Score = 82.6 bits (205), Expect = 1e-16
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 34/223 (15%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V R AP P G LHIG A++ N+ A G LR +DT+ + EY +I++ ++
Sbjct: 2 VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
WL WD + Y+ SD D+ + + L+ G AY EE+ R G+ +
Sbjct: 62 WLGLTWD---EGPYFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQ-A 117
Query: 139 PFYNR----LPSESLNLFR--------RMR---SGE--FKDGAHVLRVKINMKSKNINMR 181
P Y+ L E F R + + ++D ++R +++ + ++
Sbjct: 118 PRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQD---LVRGRVSWQGADLG-G 173
Query: 182 DPIIYRIRHVNHYRTNNNWCI-YPMYDYAHPISDAIENITHSI 223
D +I R I YP+Y+ + D IT I
Sbjct: 174 DMVI--------ARAAPRGEIGYPLYNLVVVVDDIAMGITDVI 208
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 78.3 bits (194), Expect = 6e-16
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 17 PQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKT 76
Q I RFAP P+G LH G + ++ A G +R +D +P +E +I++
Sbjct: 4 TQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQ 63
Query: 77 IKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAY 115
++ +WD + + S D + +L G +Y
Sbjct: 64 LEHYGLHWD---GDVLWQSQRHDAYREALAWLHEQGLSY 99
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase
1, glurs 1, structural genomics, joint center for ST
genomics, JCSG; 2.34A {Thermotoga maritima}
Length = 481
Score = 78.8 bits (195), Expect = 2e-15
Identities = 62/224 (27%), Positives = 94/224 (41%), Gaps = 31/224 (13%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
V RFAP P G+LH+G A++ NF A K G LR +DT+ + +EY +++++
Sbjct: 13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72
Query: 78 KWLNFNWD-----KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLH 132
+WL WD Y S+ +I + AE L+ G AY EEI R L
Sbjct: 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLL 132
Query: 133 EPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKI-------------NMKSKNIN 179
G+ P Y++ E + R R E K + K+ + K
Sbjct: 133 SEGKA-PHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGA 191
Query: 180 MRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSI 223
+ D +I R+N P Y++A + D + ITH I
Sbjct: 192 IGDFVI--------MRSNG----LPTYNFACVVDDMLMEITHVI 223
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase; HET: GLU ATP; 1.80A {Thermus
thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
1g59_A 1gln_A
Length = 468
Score = 74.9 bits (185), Expect = 3e-14
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V+TR AP P G H+G A N+ A + G +R +DT+ + I+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 79 WLNFNWD-----KVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL ++D Y S+ + K AE L+ G AY + EE+ R E
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK---E 118
Query: 134 PGRNSPFYNR----LPSESLNLFRRMRSGEFKDGAHVLRVKI--------------NMKS 175
G Y+ +P E R R GE HV+R+K+ +
Sbjct: 119 KGG----YDGRARNIPPEEAE--ERARRGE----PHVIRLKVPRPGTTEVKDELRGVVVY 168
Query: 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSI 223
N + D ++ +++ YP Y A+ + D + +T I
Sbjct: 169 DNQEIPDVVL--------LKSDG----YPTYHLANVVDDHLMGVTDVI 204
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 73.8 bits (181), Expect = 6e-14
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 534 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG 593
LP+ C +CG P C +A IA KA + CP + L P+ I
Sbjct: 10 KHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPV---ALIKV 66
Query: 594 NEKSRCCAIIKEN 606
+ + I E
Sbjct: 67 GKGEKVLEIGHET 79
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
2; protein-RNA complex, ligase-RNA complex; HET: GSU;
3.37A {Thermotoga maritima}
Length = 592
Score = 71.5 bits (176), Expect = 4e-13
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
V RFAP P G+LH+G A++ N+ A K G LR +DT+ + ++EY I++++
Sbjct: 129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 188
Query: 78 KWLNFNWD---KVKKRI--YYASDYFDILYKIAEYLIISGDAY 115
+W +WD + Y S+ +I + AE L+ AY
Sbjct: 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 231
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
aminoacyl-tRNA synthetase, ATP-binding, ligase,
nucleotide-binding; HET: GSU; 2.00A {Thermotoga
maritima} PDB: 3akz_B*
Length = 488
Score = 71.4 bits (176), Expect = 4e-13
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
V RFAP P G+LH+G A++ N+ A K G LR +DT+ + ++EY I++++
Sbjct: 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESL 84
Query: 78 KWLNFNWD---KVKKRI--YYASDYFDILYKIAEYLIISGDAY 115
+W +WD + Y S+ +I + AE L+ AY
Sbjct: 85 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
aminoacylation, protein biosynthesis, aminoacyl-tRNA
synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
PDB: 3pny_A 3pnv_A
Length = 498
Score = 70.3 bits (173), Expect = 9e-13
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
V RF P P G H+G ++ N+ A G R +DT+ ++++E +++ +
Sbjct: 6 TVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDAL 65
Query: 78 KWLNFNWDKVKKRI-----YYASDYFDILYKIAEYLIISGDAY 115
+WL +WD+ + Y S +I + L+ +G+AY
Sbjct: 66 RWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 3e-11
Identities = 99/630 (15%), Positives = 181/630 (28%), Gaps = 186/630 (29%)
Query: 35 HAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYA 94
K I FE A+ N C D + +E ++ II +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMS--------KDAVSGTLR- 66
Query: 95 SDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRR 154
F L E ++ +V+ E + IN L P + R PS ++
Sbjct: 67 --LFWTLLSKQEEMV---QKFVE----EVLRINYKFLMSPIKTEQ---RQPSMMTRMYIE 114
Query: 155 MRSGEFKDGA-----HVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYA 209
R + D +V R++ +K + + +R N I +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQ------ALLELRP------AKNVLIDGV---- 158
Query: 210 HP-------ISDAIENITHSICTLEFQDHRPF--YEWI-----------LNKIDKTNFIK 249
D + + Q F + W+ L + K +
Sbjct: 159 -LGSGKTWVALDVCLS-------YKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQI 209
Query: 250 RPFPKQYEFSRLNLTHTITS-KRKLLKLLEKK-------IVDG-WD-------DPRMPTL 293
P N+ I S + +L +LL+ K ++ + + L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 294 IGMR---------------------RRGYTP-ESIKLFCKRIGVSKSD-----SWIN--- 323
+ R TP E L K + D N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 324 IEILEQALRDDLDIKAPRI----MAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKEK 379
+ I+ +++RD L + + II + L+ E P R+ +
Sbjct: 330 LSIIAESIRDGLA----TWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKM--FDR- 377
Query: 380 LRYFP----IS----KILW--IERDDFMEIPTKKYFRLYPPIGKNS-GNRVRLRYGYVVE 428
L FP I ++W + + D M + K Y + K + + + +E
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISI-PSIYLE 434
Query: 429 CTGFKKNKNNE------VVEVY---CKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIE 479
K NE +V+ Y + D L Y + H +IE
Sbjct: 435 ---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQY-----FYSHIGHHLKNIE 485
Query: 480 ARLYDRLFIDPYPNI--VNNKDFKLLINPNSKKVISAYLEPNLK-LIFPKKH-----AQF 531
LF + + + K + + ++ S + L+ L F K + ++
Sbjct: 486 HPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 532 EQ------NLLPQ--TQCTKCGYPGCRQYA 553
E+ + LP+ Y + A
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 64.1 bits (155), Expect = 1e-10
Identities = 70/425 (16%), Positives = 138/425 (32%), Gaps = 123/425 (28%)
Query: 26 EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNWD 85
+PN H+ +I + LR L ++K Y N ++ + L +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAE-----LRR-----LLKSKPYENCLL--V--LLNVQN 255
Query: 86 KVKKRIYYASDYFDILYKIAEYLIISGDA----YVDSQNTEEIYINRGNLHEPGRNSPFY 141
+ + + F++ KI L+ + ++ + T I ++ +
Sbjct: 256 A---KAW---NAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDH-------HSMTLT 299
Query: 142 NRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDP-----IIYRIRHVNHYRT 196
P E +L L + + + +P I IR + T
Sbjct: 300 ---PDEVKSLL-----------LKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLAT 343
Query: 197 NNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYE-------------------W 237
+NW + D ++ IE+ S+ LE ++R ++ W
Sbjct: 344 WDNW-KHVNCD---KLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 238 ----------ILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDD 287
++NK+ K + +++ PK+ S ++ + K + L + IVD ++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 288 PR---MPTLIGMRRRGYTPESIKLFCKRIG-----VSKSDSW-------INIEILEQALR 332
P+ LI Y F IG + + ++ LEQ +R
Sbjct: 456 PKTFDSDDLIPPYLDQY-------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 333 -DDLDIKAP-RIMAVLNPIKL----IISNFLDNQEIECTAPLFSRQHTQYKEKLRYFPIS 386
D A I+ L +K I N + + F + +E L +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLICSKYT 565
Query: 387 KILWI 391
+L I
Sbjct: 566 DLLRI 570
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 57.7 bits (140), Expect = 4e-11
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654
A + CI C C CPV+AI + + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNAIS-SGDDRYVIDADTCIDCGACAGVCPVDAPV 53
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGA 626
P+N I + +I + CI C C CPVDA + A
Sbjct: 19 PVNAISSGDDR---YVIDADTCIDCGACAGVCPVDAPVQA 55
Score = 36.1 bits (84), Expect = 0.002
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 638 CTGCDLCIKKCPVNCISM 655
C C C +CPVN IS
Sbjct: 8 CISCGACEPECPVNAISS 25
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 64.7 bits (158), Expect = 4e-11
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 571 RKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHM 630
R + ++ ++ P + I E KCIGC C Q CP AI G
Sbjct: 3 RTVMERIEYEMHTPDPKAD-----PDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEP 57
Query: 631 H-TIFSKLCTGCDLCIKKCPVNCIS 654
H + C C C+ CP N I
Sbjct: 58 HSIPHIEACINCGQCLTHCPENAIY 82
Score = 41.2 bits (97), Expect = 0.001
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 594 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTG 640
E +I CI C C+ CP +AI A + + KL G
Sbjct: 52 GEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDG 98
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 58.8 bits (142), Expect = 6e-11
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII--------GAAKHMHTIFSKLC 638
P+ + + CI CI +CPV+ + K + + C
Sbjct: 24 PVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQAC 83
Query: 639 TGCDLCIKKCPVNCISM 655
C C+ CPV I +
Sbjct: 84 IFCMACVNVCPVAAIDV 100
Score = 36.4 bits (84), Expect = 0.005
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 619 PVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEV 658
PV+ H + + LC CI CPVN +
Sbjct: 24 PVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDT 65
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 57.0 bits (138), Expect = 2e-10
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 653
A++ ++CI C +C CP A I + I LCT C C++ CPV+ I
Sbjct: 1 ALMITDECINCDVCEPECPNGA-ISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAI 58
Score = 37.4 bits (87), Expect = 0.001
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 638 CTGCDLCIKKCPVNCISM 655
C CD+C +CP IS
Sbjct: 8 CINCDVCEPECPNGAISQ 25
Score = 31.2 bits (71), Expect = 0.16
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCT------LCIQSCPVDAII 624
P I +++ +I+ + C C C++ CPVDAII
Sbjct: 19 PNGAISQGDETY---VIEPSLCTECVGHYETSQCVEVCPVDAII 59
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 62.1 bits (151), Expect = 5e-10
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 550 RQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEKSRCCAIIKENK 607
+ + + P +K I + + K + +G + + A+I E
Sbjct: 894 KMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGK-ALQYLGTFGELSNIEQVVAVIDEEM 952
Query: 608 CIGCTLCIQSCP---VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISMIEVT---P 660
CI C C +C AI + + CTGC LC+ CP+ +CI M+ T
Sbjct: 953 CINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYE 1012
Query: 661 CRTG 664
+ G
Sbjct: 1013 PKRG 1016
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 57.4 bits (138), Expect = 6e-10
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 601 AIIKENKCIGC-----TLCIQSCPVDAII--GAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
+ + KC GC T C CP D + + +C C C+K CP I
Sbjct: 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAI 62
Query: 654 SM 655
+
Sbjct: 63 DV 64
Score = 41.3 bits (96), Expect = 2e-04
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
P + + +++ + + C C C++ CP AI
Sbjct: 26 PNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAI 62
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 57.2 bits (137), Expect = 1e-09
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 601 AIIKENKCIGC-----TLCIQSCPVDAIIGAAKHM--HTIFSKLCTGCDLCIKKCPVNCI 653
+ +KC GC T C+ CP D +I + M + C C CIK CP I
Sbjct: 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61
Query: 654 SM-IEVTPCRTGWDAWSQKKADDARKRYYLRKKRL----FHEKKENYAKLKKATIQFKKN 708
+ G + ++D R + F + +K + +
Sbjct: 62 TARPYADFAPMGGTCIPLRGSEDIMWTIKFRNGSVKRFKFPIRTTPEGSIKPFEGKPEAG 121
Query: 709 NRETQKSLIEMAVKRIKELKNKENK 733
+ E + E A+ + ++ +
Sbjct: 122 DLENELLFTETALTVPQVALGQKAQ 146
Score = 41.4 bits (96), Expect = 2e-04
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
P + + + + + C C CI+ CP AI
Sbjct: 25 PNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 58.2 bits (141), Expect = 6e-09
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 20/110 (18%)
Query: 566 CPTGGRKG---IIKLAKYLN----KPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 618
C R+ +KL KP +P + ++ + KC+ C C+ +C
Sbjct: 98 CGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNAC 157
Query: 619 PVDAIIGA-------------AKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ A A+ C C CI CPV +S
Sbjct: 158 GKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSE 207
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 51.6 bits (124), Expect = 1e-08
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 653
++ + CI C +C CP AI + + I LCT C C + CPV+CI
Sbjct: 1 SLKITDDCINCDVCEPECPNGAISQGEEI-YVIDPNLCTECVGHYDEPQCQQVCPVDCI 58
Score = 35.0 bits (81), Expect = 0.008
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 638 CTGCDLCIKKCPVNCISM 655
C CD+C +CP IS
Sbjct: 8 CINCDVCEPECPNGAISQ 25
Score = 30.8 bits (70), Expect = 0.30
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 602 IIKENKCIGCT------LCIQSCPVDAIIGAAKHMHT 632
+I N C C C Q CPVD I ++ +
Sbjct: 31 VIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVES 67
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP:
d.58.1.1
Length = 80
Score = 51.3 bits (123), Expect = 1e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 653
A+ + C C C++ CP +AI ++ I C+ C C CP +CI
Sbjct: 1 ALYINDDCTACDACVEECPNEAIT-PGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCI 58
Score = 32.8 bits (75), Expect = 0.057
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 638 CTGCDLCIKKCPVNCISMIE 657
CT CD C+++CP I+ +
Sbjct: 8 CTACDACVEECPNEAITPGD 27
Score = 30.5 bits (69), Expect = 0.33
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 602 IIKENKCIGCT------LCIQSCPVDAIIGAAKHMHT 632
+I KC C C CP D I + T
Sbjct: 31 VIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRET 67
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9*
3m9s_9*
Length = 182
Score = 49.8 bits (119), Expect = 4e-07
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 605 ENKCIGCTLCIQSCPVDAI-IGAAKHMHTIFSK--------------LCTGCDLCIKKCP 649
KCIGC+LC +CP AI + A++ C C LC + CP
Sbjct: 50 LEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACP 109
Query: 650 VNCISM 655
I +
Sbjct: 110 TGAIVL 115
Score = 34.4 bits (79), Expect = 0.065
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 638 CTGCDLCIKKCPVNCISMI 656
C GC LC CP I +
Sbjct: 53 CIGCSLCAAACPAYAIYVE 71
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 46.3 bits (110), Expect = 9e-07
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPV-NCI 653
A++ KCI C +C CP +AI I S CT C C K CP+ N I
Sbjct: 1 ALLITKKCINCDMCEPECPNEAISMGDHIYE-INSDKCTECVGHYETPTCQKVCPIPNTI 59
Score = 31.7 bits (72), Expect = 0.15
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 638 CTGCDLCIKKCPVNCISMIE 657
C CD+C +CP ISM +
Sbjct: 8 CINCDMCEPECPNEAISMGD 27
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 9e-07
Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 122/309 (39%)
Query: 372 QHTQYK----EKLRYFPISKILWIERDDFM---------EI----PTKK--YFRLYPPIG 412
Q +Q + + + ++ +W D+ +I P +F G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF------G 1677
Query: 413 KNSGNRVRLRYG---YVVECTGFKKNKN--NEVVEVYCKY-FPDSKSGTKLSSN------ 460
G R+R Y + G K + E+ E Y F K +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 461 ------YKV---KGNIHWISKS--H------ALSIEARLYDRLFIDPYPNIVNNKDFKLL 503
++ KG I + H AL+ A
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD---------------------- 1775
Query: 504 INPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQCTKCGY------PG--------- 548
V+S +E ++++F Q +P+ + + Y PG
Sbjct: 1776 -------VMS--IESLVEVVF--YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 549 -CRQYAEAIANKK------ANYNQCPT------GGRKGIIKLAKYLNK------PIIPLN 589
+ E + + NYN G + + + LN II L
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 590 TIYGNEKSR 598
E+
Sbjct: 1884 KSLSLEEVE 1892
Score = 44.7 bits (105), Expect = 1e-04
Identities = 59/373 (15%), Positives = 103/373 (27%), Gaps = 156/373 (41%)
Query: 10 DKYGNKLPQVITRFAP--EPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENK 67
+++ LP+ FA EP + EL K+ G + + + +
Sbjct: 35 EQFNKILPEPTEGFAADDEP---------TTPA---ELVGKFLGYVSSLVEPS----KVG 78
Query: 68 EYVNSIIKTIKWLN-FNWDKVKKRIYYASDYF---DILYKIAEYLIISGDAYVDSQNTEE 123
++ + ++ L F + Y DI A+ L + V ++ +
Sbjct: 79 QF-DQVLNLC--LTEFE-----------NCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 124 IYIN-RGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFK-------DGAHVLRVKINMKS 175
YI R P S S LFR + G + G
Sbjct: 125 NYITARIMAKRPFDK-------KSNSA-LFRAVGEGNAQLVAIFGGQG------------ 164
Query: 176 KNIN-----MRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTL--EF 228
N + +RD +Y+ Y + D I+ ++ L
Sbjct: 165 -NTDDYFEELRD--LYQT-------------------YHVLVGDLIKFSAETLSELIRTT 202
Query: 229 QDHRPFY-------EWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKI 281
D + EW+ N + P K Y L S
Sbjct: 203 LDAEKVFTQGLNILEWLENPSN------TP-DKDY------LLSIPIS------------ 237
Query: 282 VDGWDDPRMPTLIGM----------RRRGYTPESI-KLFCKRIGVSK----------SDS 320
P LIG+ + G+TP + G S+ +DS
Sbjct: 238 --------CP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 321 WIN-IEILEQALR 332
W + + +A+
Sbjct: 289 WESFFVSVRKAIT 301
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 45.5 bits (108), Expect = 1e-06
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 605 ENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 657
+++CI C C++ P +D I A + + + CPV CI +
Sbjct: 8 QDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEE-VEEAMDTCPVQCIHWED 63
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 48.8 bits (117), Expect = 5e-06
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 601 AIIKENKCI----GCTLCIQSCPV-----DAI-IGAAKHMHTIFSKLCTGCDLCIKKCPV 650
A+I +KC G LC + CPV +AI I + I CTGC +C+ KCP
Sbjct: 22 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81
Query: 651 NCISMI 656
N IS++
Sbjct: 82 NAISIV 87
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Length = 59
Score = 43.1 bits (102), Expect = 7e-06
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 603 IKENKCIGCTLCIQSCP-VDAIIGAAKHMHTIFSKLCTGC-DLCIKKCPVNCIS 654
I +CIGC C++ CP V A+I + C I CPV IS
Sbjct: 4 IDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 48.1 bits (115), Expect = 9e-06
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 601 AIIKENKCIG--CTL-CIQSCPV-----DAI-IGAAKHMHTIFSKLCTGCDLCIKKCPVN 651
AI+ +KC C C +SCPV I + + I LC GC +C+KKCP +
Sbjct: 9 AIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFD 68
Query: 652 CISMI 656
I +I
Sbjct: 69 AIQII 73
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
{Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Length = 58
Score = 41.0 bits (96), Expect = 4e-05
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 14/61 (22%)
Query: 602 IIKENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKLCTGCDLCIKK----CPVNCI 653
I + C+ C C++ CP ++ A ++ C+++ CP I
Sbjct: 2 IEVNDDCMACEACVEICPDVFEMNEEGDKAVVINP------DSDLDCVEEAIDSCPAEAI 55
Query: 654 S 654
Sbjct: 56 V 56
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium
tuberculosis, Fe cluster, metal-binding, electron
transfer, transport; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 42.0 bits (99), Expect = 5e-05
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 602 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659
+I E C+ CI+ CPVD I M I C C C CPV I +
Sbjct: 3 VIAEP-CVDVKDKACIEECPVDCIY-EGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60
Query: 660 PCRTGWDAWSQKKAD 674
P W +++Q AD
Sbjct: 61 P--DQWSSYAQANAD 73
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Length = 77
Score = 41.1 bits (97), Expect = 6e-05
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 602 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659
+I E CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 3 VITEP-CIGTKDASCVEVCPVDCIH-EGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60
Query: 660 PCRTGWDAWSQKKADDARK 678
P W ++ QK D +K
Sbjct: 61 P--EEWKSYIQKNRDFFKK 77
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 41.5 bits (98), Expect = 6e-05
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 602 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659
++ +N CI C T C++ CPVD + I C C LC +CP I +
Sbjct: 3 VVTDN-CIKCKYTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60
Query: 660 PCRTGWDAWSQKKADDARK 678
P + Q A+ A
Sbjct: 61 P--EDMQEFIQLNAELAEV 77
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
azotobacter, hydrogen bonds, stability, high resolution;
1.64A {Thermus aquaticus} SCOP: d.58.1.2
Length = 78
Score = 40.7 bits (96), Expect = 7e-05
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 602 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 659
+I E CIG C++ CPV+ I I + C C C+ CPVN I E
Sbjct: 3 VICEP-CIGVKDQSCVEVCPVECIY-DGGDQFYIHPEECIDCGACVPACPVNAIYPEEDV 60
Query: 660 PCRTGWDAWSQKKAD 674
P W ++ +K
Sbjct: 61 P--EQWKSYIEKNRK 73
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 42.1 bits (99), Expect = 3e-04
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 602 IIKENKCIGCTLCIQSCPVDA--IIGAAKHMHTIFSKLCTGC-DL--------CIKKCPV 650
+ CIGC CI CP + + ++ K CT C D C+K CP
Sbjct: 127 DFQSENCIGCGYCIAGCPFNIPRLNKEDNRVY----K-CTLCVDRVSVGQEPACVKTCPT 181
Query: 651 NCI 653
I
Sbjct: 182 GAI 184
Score = 32.1 bits (73), Expect = 0.63
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 614 CIQSCPVDAII-----GAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 660
C+++CP I G + C GC CI CP N + +
Sbjct: 108 CLKACPSAGAIIQYANGIVDFQS----ENCIGCGYCIAGCPFNIPRLNKEDN 155
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 41.2 bits (97), Expect = 4e-04
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 602 IIKENKCIGCTLCIQSCPVDAI-IGAAKHMHTIFSKLCTGC-DL--------CIKKCPVN 651
++ KCI C CI +CP DA + A ++ SK CT C C++ CP
Sbjct: 84 LVDPKKCIACGACIAACPYDARYLHPAGYV----SK-CTFCAHRLEKGKVPACVETCPTY 138
Query: 652 CI 653
C
Sbjct: 139 CR 140
Score = 29.6 bits (67), Expect = 2.4
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 17/67 (25%)
Query: 602 IIKENKCIGCTLCIQSC------PVDAI--------IGAAKHMHTIF-SKLCTGCD--LC 644
I + C+GC C +C P +G ++ F + C C+ C
Sbjct: 7 AIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPC 66
Query: 645 IKKCPVN 651
+ CP
Sbjct: 67 VPVCPTG 73
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 614 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCP 649
C+ CP A + + K C C CI CP
Sbjct: 66 CVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACP 101
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
cobalt(III), electron transport; HET: NCO; 1.50A
{Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
3pni_A
Length = 66
Score = 36.6 bits (85), Expect = 0.002
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 601 AIIKENKCIGCTLCIQSCP-----VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
+ ++ CIG +C CP D K +L ++ CPV+ I++
Sbjct: 4 VSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63
Query: 656 IE 657
E
Sbjct: 64 EE 65
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 38.9 bits (91), Expect = 0.003
Identities = 21/126 (16%), Positives = 30/126 (23%), Gaps = 47/126 (37%)
Query: 540 QCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRC 599
QC C P C K II ++ + C
Sbjct: 71 QCRHCIAPPC---------KAT----ADMEDESAIIH-----------------DDATGC 100
Query: 600 CAIIKEN-KCIGCTLCIQSCPVDA--IIGAAKHMHTIFSKLCTGC-DL--------CIKK 647
+ I +CP D + + M K C C D C+
Sbjct: 101 VLFTPKTKDLEDYESVISACPYDVPRKVAESNQMA----K-CDMCIDRITNGLRPACVTS 155
Query: 648 CPVNCI 653
CP +
Sbjct: 156 CPTGAM 161
Score = 33.5 bits (77), Expect = 0.16
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 614 CIQSCPVDAIIGAAKH------MHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 660
C + ++ + T +K + I CP + + +
Sbjct: 80 CKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESN 132
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 39.6 bits (92), Expect = 0.004
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNC 652
+I ++KC G +CI CP I + + S+ C C +C + C
Sbjct: 211 LIDQDKCRGWRMCITGCPYKKIY---FNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRI 267
Query: 653 I 653
Sbjct: 268 R 268
Score = 31.1 bits (70), Expect = 1.2
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 614 CIQSCPVDAIIGAAKHMHT----IFSKLCTGCDLCIKKCPVNCISMIEVT 659
C+ +CP AI K I C G +CI CP I +
Sbjct: 192 CVATCPSGAIY---KREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKS 238
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/134 (14%), Positives = 32/134 (23%), Gaps = 34/134 (25%)
Query: 604 KENKCIGCTLCIQSCPVDAII-----------GAAKHMHTIFSKL--------------- 637
CI C C CP + I GA + + +K
Sbjct: 684 VPENCIQCNQCAFVCP-HSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTL 742
Query: 638 -CTGCDLCIKKCPVN--CISMIEVTPC----RTGWDAWSQKKADDARKRYYLRKKRLFHE 690
C GC C CP + M + + ++ K F E
Sbjct: 743 DCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYAARIPVKSEVLPRDSLKGSQFQE 802
Query: 691 KKENYAKLKKATIQ 704
++ +
Sbjct: 803 PLMEFSGACSGCGE 816
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 37.5 bits (86), Expect = 0.017
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 25/215 (11%)
Query: 530 QFEQNLLPQTQCTKCGYPG-----CRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKP 584
+ + ++ G P + E + + K + G + + +
Sbjct: 334 KLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVMLDYDKLGELCVRLTMEMA 393
Query: 585 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPV-----DAIIGAAKHMHTIFSKL-- 637
I + + KC C C+ +CP +A+ A K + F ++
Sbjct: 394 PIRDAAGITALPTDEELVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHD 453
Query: 638 -CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEKKENYA 696
C GC C + C I + ++ A++ R + E +
Sbjct: 454 TCIGCRRCEQVCK----KEIPILNVIE--KIAQKQIAEEKGLMRAGRGQVSDAEIRAEGL 507
Query: 697 KLKKATIQFKK------NNRETQKSLIEMAVKRIK 725
L T N K + +A + +K
Sbjct: 508 NLVMGTTPGIIAIIGCPNYAGGTKDVYYIAEEFLK 542
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 37.3 bits (86), Expect = 0.017
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 602 IIKENKCIGCTLCIQSCPVDAII--GAAKHMHTIFSKLCTGCD---------LCIKKCPV 650
++ + +C G C+++CP AI ++ K C C C ++CP
Sbjct: 178 LVDQERCKGHRHCVEACPYKAIYFNPVSQTS----EK-CILCYPRIEKGIANACNRQCPG 232
Query: 651 NCI 653
Sbjct: 233 RVR 235
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 36.8 bits (85), Expect = 0.020
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 602 IIKENKCIGCTLCIQSCPVDAI 623
+I K G + +CP +
Sbjct: 93 LIDPEKAKGKKELLDTCPYGVM 114
Score = 29.4 bits (66), Expect = 3.7
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 602 IIKENKCIGCTLCIQSC 618
+I KC C C C
Sbjct: 7 VIDVAKCQDCNNCFMGC 23
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
geometry of [4Fe-4S] cluster, electron transport; 0.92A
{Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
1ir0_A 1wtf_A*
Length = 81
Score = 33.3 bits (76), Expect = 0.037
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 601 AIIKENKCIGCTLCIQSCP----------VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650
I+ + CI C C + P + + + + L + CP
Sbjct: 4 TIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPT 63
Query: 651 NCISMIE 657
+ I + +
Sbjct: 64 DSIKVAD 70
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 35.6 bits (83), Expect = 0.052
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 324 IEILEQALRDDLDIKAPRIMAV--LNP 348
I IL+ L+ I P+I V LNP
Sbjct: 189 ITILDNDLKTKFGITQPQI-YVCGLNP 214
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 35.2 bits (82), Expect = 0.071
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 324 IEILEQALRDDLDIKAPRIMAV--LNP 348
IL LRD I PRI V LNP
Sbjct: 184 ARILHADLRDKFGIAHPRI-LVCGLNP 209
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.083
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 683 RKKRLFHEKKENYAKLKKATI-QFKKNNRETQKSLIEMAVKRIKELKNKENKKIK 736
++KRL E +++ + KK+ E + E K + + +
Sbjct: 94 QRKRL-QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 31.1 bits (71), Expect = 0.11
Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 37/72 (51%)
Query: 605 ENKCIGCTLCIQSCP-------------------VDAIIGAAKHMHTIFSKLCTGCDLCI 645
+ CIGC +C CP + AA
Sbjct: 7 ADACIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADS---------------- 50
Query: 646 KKCPVNCISMIE 657
CP IS+ E
Sbjct: 51 --CPTGAISVEE 60
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 33.0 bits (75), Expect = 0.41
Identities = 1/23 (4%), Positives = 5/23 (21%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAI 623
++ P+ +
Sbjct: 6 HHHHHSQDPNSAAPAAEAPLSHV 28
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 32.3 bits (73), Expect = 0.50
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 17/122 (13%)
Query: 1 MRRIFCF-------IYDKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLC 53
+ R D K P I P + + ++ L +N
Sbjct: 59 LSRGVFLAEKSLDKFLDDVEAKKPTFIFI-QKYPQKEVALEEYITLEFARYLQDAFNIQV 117
Query: 54 NL-------RFDDTNPLKENKEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAE 106
+ + + E + N ++K I FN DK IY YF +Y+
Sbjct: 118 IIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTF--IYTDYQYFGKMYRTIS 175
Query: 107 YL 108
+
Sbjct: 176 LV 177
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor
methylation; HET: SAH; 2.00A {Salmonella typhimurium}
SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Length = 274
Score = 31.0 bits (71), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 4 IFC---FIY-DKYGNKLPQVITRFAP--EPNGYLHIGHAKSIF 40
IFC IY DK + ++ RF P +P+G L GH+++
Sbjct: 217 IFCRNVMIYFDKTTQE--DILRRFVPLLKPDGLLFAGHSENFS 257
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 31.3 bits (71), Expect = 1.1
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 280 KIVDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 310
DG D P LI + RG++ +
Sbjct: 326 FTPDGLGDVSGYPNLIAELLDRGWSQSDLAKLT 358
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 31.3 bits (71), Expect = 1.2
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 282 VDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 310
+DG++D +P + ++ GY+ I+
Sbjct: 367 MDGFEDITDLPKITARLKAEGYSDADIEAIW 397
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 30.7 bits (67), Expect = 1.6
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
S + + V+ IN +S + + DP+I+ + H+
Sbjct: 282 STENATVKLAGEAGTGGPGGASLVVNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHF 341
Query: 198 NNWCIYPMYDYAHPISD--------AIENITHSIC 224
N C + Y + N TH+ C
Sbjct: 342 NANCSFWNYSERSMLGYWSTQGCRLVESNKTHTTC 376
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 30.6 bits (69), Expect = 2.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 282 VDGWDDPR-MPTLI-GMRRRGYTPESIK 307
VDGW D + + + RGY+ I
Sbjct: 366 VDGWKDVSEIRNVTAELITRGYSDADIA 393
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 2.5
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 669 SQKKADDARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIE 718
+ A R+K + +E + + + K NNR K+ +
Sbjct: 114 QELDAASKVMEQEWREK-AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 162
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 30.1 bits (68), Expect = 2.5
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 293 LIGMRRRGYTPESIKLF---CKRIGVSKSDSWINIEILEQALRDDLDIKA-PRIMAVLNP 348
L G+RR G+T +K ++I +S ++ E L D ++ + P + A+L
Sbjct: 223 LEGLRRNGFTMSEMKSLRAAYRKIFMSTETVSLSFEERLTELEQDQELYSVPAVSAMLQS 282
Query: 349 IKLIISN 355
I+ +
Sbjct: 283 IRDSFTE 289
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 29.6 bits (66), Expect = 2.7
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 637 LCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEKKENYA 696
L +G + P+ ++ V T + Y+ ++K EKKE
Sbjct: 64 LISG-PFKVNGVPLRRVNARYVIATSTKVSV-EGVNVEKFNVEYFAKEKLTKKEKKEANL 121
Query: 697 KLKKATIQFKKNNRETQKSL---IEMAVKRIKELK 728
++ + K E QK + + +K+ LK
Sbjct: 122 FPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLK 156
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 29.0 bits (65), Expect = 3.3
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 303 PESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEI 362
P + F + G+S S + ++ A+R + ++++ + LD+ +
Sbjct: 48 PSAQNKFPQMAGMSASQLRSSRQMQAHAIR---------VSSIMS---EYVEE-LDSDIL 94
Query: 363 ECTAPLFSRQHTQYKEKLRYFPI 385
+R H K ++ +
Sbjct: 95 PELLATLARTHDLNKVGADHYNL 117
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 29.5 bits (67), Expect = 4.0
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 293 LIGMRRRGYTPESIK 307
+ G++RRG++ E+I
Sbjct: 199 IEGLKRRGFSREAIT 213
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 29.2 bits (66), Expect = 4.2
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 293 LIGMRRRGYTPESIK 307
+ G+RRRG++P++I
Sbjct: 216 VEGLRRRGFSPDAIS 230
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 29.1 bits (66), Expect = 4.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 293 LIGMRRRGYTPESIK 307
+GM+R G++PE
Sbjct: 194 SVGMKRAGFSPEVRN 208
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 29.3 bits (66), Expect = 4.7
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 282 VDGWDDPR-MPTLI-GMRRRGYTPESIK 307
G P L + +RG ++
Sbjct: 281 PLGIRTVGEFPNLTETLLKRGMPERVVR 308
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 28.5 bits (64), Expect = 8.0
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 280 KIVDGWDDP-RMPTLI-GMRRRGYTPESIKLFC 310
++ +G +D + P LI + RR +T +K
Sbjct: 294 RVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 326
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.7 bits (62), Expect = 8.2
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 678 KRYYLRKKRLFHEKKENYAK--LKKATIQFKKNNRETQKSLIEMAVKRIKELKNKENKKI 735
K + R K K + A+ LK ++ +++ +R E K
Sbjct: 98 KALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAASVVAREMKIVTERRAEKKADSRVTY 156
Query: 736 K 736
Sbjct: 157 S 157
>2g09_A Cytosolic 5'-nucleotidase III; uniprot Q9D020, UMPH-1, pyrim
nucleotidase 1, P5N-1, NT5C3 protein, AAH38029,
BC038029, M LEAD poisoning; HET: PIN; 2.10A {Mus
musculus} PDB: 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A*
2g07_A* 2jga_A 2vkq_A 2cn1_A
Length = 297
Score = 28.4 bits (63), Expect = 9.2
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 416 GNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHA 475
G R + + C +++++ +Y+ L+ K + W +KSH
Sbjct: 61 GKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPV-LTVEEKFPYMVEWYTKSHG 119
Query: 476 LSIEARL 482
L IE +
Sbjct: 120 LLIEQGI 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,633,916
Number of extensions: 720754
Number of successful extensions: 1970
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1855
Number of HSP's successfully gapped: 137
Length of query: 736
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 635
Effective length of database: 3,881,772
Effective search space: 2464925220
Effective search space used: 2464925220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)