RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9410
(736 letters)
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 277 bits (708), Expect = 1e-87
Identities = 181/327 (55%), Positives = 228/327 (69%), Gaps = 8/327 (2%)
Query: 10 DKYGNKLPQVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEY 69
D K V TRF PEPNGYLHIGHAKSI +NF +A Y G CNLRFDDTNP+KE+ EY
Sbjct: 11 DLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEY 70
Query: 70 VNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRG 129
V SI ++WL F+W + Y+SDYFD L+ A LI G AYVD E+I RG
Sbjct: 71 VESIKNDVEWLGFHWSG---NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 127
Query: 130 NLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIR 189
L +PG+NSP+ +R E+L LF +MR+G F++G LR KI+M S I MRDP++YRI+
Sbjct: 128 TLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIK 187
Query: 190 HVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 249
H++T N WCIYPMYD+ H ISDA+E ITHS+CTLEFQD+R Y+W+L+ N
Sbjct: 188 FAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLD-----NITI 242
Query: 250 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 309
P+QYEFSRLNL +T+ SKRKL L+ K V+GWDDPRMPT+ G+RRRGYT SI+ F
Sbjct: 243 PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREF 302
Query: 310 CKRIGVSKSDSWINIEILEQALRDDLD 336
CKRIGV+K D+ I + LE +R+DL+
Sbjct: 303 CKRIGVTKQDNTIEMASLESCIREDLN 329
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 188 bits (479), Expect = 6e-55
Identities = 65/319 (20%), Positives = 110/319 (34%), Gaps = 34/319 (10%)
Query: 19 VITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIK 78
V+TR AP P G H+G A N+ A + G +R +DT+ + I+ +K
Sbjct: 2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 79 WLNFNWDKVKK-----RIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
WL ++D+ Y S+ + K AE L+ G AY + EE+ R
Sbjct: 62 WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNH 193
+ +E R R G + + +R ++Y + +
Sbjct: 122 YDGRARNIPPEEAE-----ERARRG-EPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD 175
Query: 194 YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFP 253
YP Y A+ + D + +T I E+ P + + P
Sbjct: 176 -VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMP 234
Query: 254 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 313
N T SKRK +L + G+ PE+++ + +
Sbjct: 235 LLR-----NPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLM 273
Query: 314 GVSKSDSWINIEILEQALR 332
G S D I LE+ ++
Sbjct: 274 GFSMPDGR-EIFTLEEFIQ 291
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 160 bits (404), Expect = 9e-45
Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 32/290 (11%)
Query: 18 QVITRFAPEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTI 77
Q I RFAP P+G LH G + ++ A G +R +D +P +E +I++ +
Sbjct: 2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61
Query: 78 KWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRN 137
+ +WD + + S D + +L G +Y + I G R
Sbjct: 62 EHYGLHWD---GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRV 118
Query: 138 SPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTN 197
+ A +R + + +R I +
Sbjct: 119 LHHGPD------------------NAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 160
Query: 198 NNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYE 257
+ Y+ A + D + +T + + + + + +
Sbjct: 161 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG-----WKVPDYIHL 215
Query: 258 FSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 307
LN SK+ L DPR + ++ G E+
Sbjct: 216 PLALNPQGAKLSKQNHAPALP------KGDPRPVLIAALQFLGQQAEAHW 259
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 135 bits (341), Expect = 6e-37
Identities = 75/195 (38%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 339 APRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKEK-LRYFPISKILWIERDDFM 397
APR MAV++P+KL+I N+ + T P H E R P S +WI+R DF
Sbjct: 1 APRAMAVIDPVKLVIENY-QGEGEMVTMPN----HPNKPEMGSRQVPFSGEIWIDRADFR 55
Query: 398 EIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKL 457
E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 56 EEANKQYKRLVL------GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDP- 108
Query: 458 SSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLE 517
+ KVKG IHW+S +HAL +E RLYDRLF P P DF +INP S + + E
Sbjct: 109 ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPG--AADDFLSVINPESLVIKQGFAE 166
Query: 518 PNLKLIFPKKHAQFE 532
P+LK K QFE
Sbjct: 167 PSLKDAVAGKAFQFE 181
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 73.2 bits (179), Expect = 1e-15
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 592 YGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII---GAAKHMHTIFSKLCTGCDLCIKKC 648
+ + A+I E CI C C +C + + CTGC LC+ C
Sbjct: 93 ELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVC 152
Query: 649 PV-NCISMIEVTP 660
P+ +CI M+ T
Sbjct: 153 PIIDCIRMVSRTT 165
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 63.8 bits (155), Expect = 9e-14
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
A + CI C C CPV+AI + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNAISS-GDDRYVIDADTCIDCGACAGVCPVDAP 52
Score = 40.3 bits (94), Expect = 2e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGA 626
P+N I + +I + CI C C CPVDA + A
Sbjct: 19 PVNAISSGD---DRYVIDADTCIDCGACAGVCPVDAPVQA 55
Score = 34.9 bits (80), Expect = 0.002
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTP 660
C C C +CPVN IS +
Sbjct: 8 CISCGACEPECPVNAISSGDDRY 30
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId:
879]}
Length = 58
Score = 63.1 bits (153), Expect = 2e-13
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 605 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK--LCTGCDLCIKKCPVNCISM 655
+ C+ C C++ CP + + + + I CP I
Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57
Score = 39.6 bits (92), Expect = 4e-05
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 585 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII 624
I P E + I ++ I SCP +AI+
Sbjct: 17 ICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIV 56
Score = 28.8 bits (64), Expect = 0.27
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 638 CTGCDLCIKKCPVNCISMIE 657
C C+ C++ CP E
Sbjct: 8 CMACEACVEICPDVFEMNEE 27
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus
asaccharolyticus [TaxId: 1258]}
Length = 55
Score = 62.3 bits (151), Expect = 4e-13
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 655
A + + CI C C CPV+ I ++ I + C C C CPV +
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQ--EGSIYAIDADSCIDCGSCASVCPVGAPNP 53
Score = 37.7 bits (87), Expect = 2e-04
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 599 CCAIIKENKCIGCTLCIQSCPVDAI 623
I + CI C C CPV A
Sbjct: 27 SIYAIDADSCIDCGSCASVCPVGAP 51
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 62.8 bits (152), Expect = 5e-13
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFS-KLCTGCDLCIKKCPVNCISMIE 657
I E KCIGC C Q CP AI G H+I + C C C+ CP N I +
Sbjct: 29 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQ 84
Score = 35.8 bits (82), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
P I+G +I CI C C+ CP +AI
Sbjct: 45 PTAAIFGEMG-EPHSIPHIEACINCGQCLTHCPENAI 80
Score = 34.3 bits (78), Expect = 0.007
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 629 HMHTIFSKLCTGCDLCIKKCPVNCISMIE 657
H I C GCD C + CP I
Sbjct: 25 HFVQIDEAKCIGCDTCSQYCPTAAIFGEM 53
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 61.3 bits (148), Expect = 2e-12
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 653
+ + CIGCT C+++CP D + A + + ++ C GC C CP + +
Sbjct: 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Query: 654 SM 655
S+
Sbjct: 63 SI 64
Score = 39.0 bits (90), Expect = 1e-04
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 586 IPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
+ + G + + + + C+GC C +CP D +
Sbjct: 25 LEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Score = 35.9 bits (82), Expect = 0.001
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 629 HMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 674
H I+ C GC C++ CP + + M+ C+ G A S + D
Sbjct: 2 HTVKIYDT-CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTED 46
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 59.8 bits (144), Expect = 9e-12
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 603 IKENKCIGCTLCIQSCPVDAI--------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654
+ + CI CI +CPV+ + K + + C C C+ CPV I
Sbjct: 40 VDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAID 99
Query: 655 M 655
+
Sbjct: 100 V 100
Score = 37.5 bits (86), Expect = 6e-04
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 585 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
+T + + E CI C C+ CPV AI
Sbjct: 60 FQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAI 98
Score = 37.1 bits (85), Expect = 0.001
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 624 IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 666
+G + + LC CI CPVN +
Sbjct: 31 LGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEK 73
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria
(Desulfovibrio africanus) [TaxId: 873]}
Length = 64
Score = 57.1 bits (137), Expect = 3e-11
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMH---TIFSKLCTGCDLCIKKCPVNCISMIE 657
+ +++CI C C++ P + + + + CPV CI +
Sbjct: 6 VDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63
Score = 35.9 bits (82), Expect = 9e-04
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 589 NTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
+ + ++ + +CPV I
Sbjct: 25 FAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCI 59
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 57.1 bits (137), Expect = 3e-11
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK-----LCTGCDLCIKKCPVNCISMIE 657
+ ++ CIG +C CP + L ++ CPV+ I++ E
Sbjct: 6 VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65
Score = 32.4 bits (73), Expect = 0.016
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 592 YGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
G + + I E +++CPV AI
Sbjct: 30 EGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 55.5 bits (133), Expect = 2e-10
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCIS 654
A++ ++CI C +C CP AI + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDVCEPECPNGAISQ-GDETYVIEPSLCTECVGHYETSQCVEVCPVDCII 59
Query: 655 MIE 657
Sbjct: 60 KDP 62
Score = 35.5 bits (81), Expect = 0.002
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 599 CCAIIKENKCIGCT------LCIQSCPVDAII 624
+I+ + C C C++ CPVD II
Sbjct: 28 ETYVIEPSLCTECVGHYETSQCVEVCPVDCII 59
Score = 29.3 bits (65), Expect = 0.35
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 633 IFSKLCTGCDLCIKKCPVNCISMIEVTP 660
+ + C CD+C +CP IS + T
Sbjct: 3 MITDECINCDVCEPECPNGAISQGDETY 30
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 55.1 bits (132), Expect = 2e-10
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 601 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658
A + CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKDASCVEVCPVDCIHEG-EDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 659 TPCRTGWDAWSQKKADDARK 678
P W ++ QK D +K
Sbjct: 60 VP--EEWKSYIQKNRDFFKK 77
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId:
2336]}
Length = 59
Score = 53.0 bits (126), Expect = 8e-10
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 602 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK-LCTGCDLCIKKCPVNCISM 655
+ + CIGC +C CP +G + + CP IS+
Sbjct: 4 RVDADACIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISV 58
Score = 31.4 bits (70), Expect = 0.041
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 594 NEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
+ + + E SCP AI
Sbjct: 27 GDDGKAKVLQPETDLPCAKDAADSCPTGAI 56
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 81
Score = 52.8 bits (126), Expect = 2e-09
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 601 AIIKENKCIGCTLCIQSCP----------VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 650
I+ + CI C C + P + + + + L + CP
Sbjct: 4 TIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPT 63
Query: 651 NCISMIE 657
+ I + +
Sbjct: 64 DSIKVAD 70
Score = 30.1 bits (67), Expect = 0.16
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 595 EKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
+ ++ + + + CP D+I
Sbjct: 38 DDNQGIVEVPDILIDDMMDAFEGCPTDSI 66
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 52.1 bits (124), Expect = 3e-09
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCIS 654
A+ + C C C++ CP +AI +K C+ C C CP +CI
Sbjct: 1 ALYINDDCTACDACVEECPNEAITPGDPIYVIDPTK-CSECVGAFDEPQCRLVCPADCIP 59
Query: 655 MIE 657
Sbjct: 60 DNP 62
Score = 31.3 bits (70), Expect = 0.074
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 599 CCAIIKENKCIGCT------LCIQSCPVDAIIGAAKHMHTI 633
+I KC C C CP D I + T
Sbjct: 28 PIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETR 68
Score = 26.7 bits (58), Expect = 2.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTPC 661
CT CD C+++CP I+ +
Sbjct: 8 CTACDACVEECPNEAITPGDPIYV 31
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 149
Score = 51.0 bits (121), Expect = 3e-08
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 603 IKENKCIGC-----TLCIQSCPVDAIIGAAKHMHT--IFSKLCTGCDLCIKKCPVNCISM 655
+ KC GC T C CP D + + M +C C C+K CP I +
Sbjct: 4 VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDV 63
Score = 37.1 bits (85), Expect = 0.002
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCP 619
P + + +++ + + C C C++ CP
Sbjct: 25 PNDLMTLDKEKMKAYNREPDMCWECYSCVKMCP 57
Score = 29.8 bits (66), Expect = 0.63
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 638 CTGC-----DLCIKKCPVNCISMIEVTPC 661
C GC C CP + +++ +
Sbjct: 9 CDGCKALERTACEYICPNDLMTLDKEKMK 37
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 51.0 bits (121), Expect = 4e-08
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 603 IKENKCIGCTLCIQSCPVDAIIGAAKHM---------------HTIFSKLCTGCDLCIKK 647
KCIGC+LC +CP AI + I C C LC +
Sbjct: 23 NGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEA 82
Query: 648 CPVNCISM 655
CP I +
Sbjct: 83 CPTGAIVL 90
Score = 32.9 bits (74), Expect = 0.053
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 595 EKSRCCAIIKENKCIGCTLCIQSCPVDAII 624
E+ I +CI C LC ++CP AI+
Sbjct: 60 ERYAKVYEINMLRCIFCGLCEEACPTGAIV 89
Score = 31.0 bits (69), Expect = 0.26
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTPCR 662
C GC LC CP I +
Sbjct: 28 CIGCSLCAAACPAYAIYVEPAENDP 52
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId:
274]}
Length = 77
Score = 48.5 bits (115), Expect = 5e-08
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 603 IKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 660
+ CIG C++ CPV+ I I + C C C+ CPVN I E P
Sbjct: 3 VICEPCIGVKDQSCVEVCPVECIYDG-GDQFYIHPEECIDCGACVPACPVNAIYPEEDVP 61
Query: 661 CRTGWDAWSQKKAD 674
W ++ +K
Sbjct: 62 --EQWKSYIEKNRK 73
Score = 32.0 bits (72), Expect = 0.035
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 587 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 623
P+ IY I +CI C C+ +CPV+AI
Sbjct: 21 PVECIYDGGDQ---FYIHPEECIDCGACVPACPVNAI 54
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 48.3 bits (114), Expect = 6e-08
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 602 IIKENKCIGCTLCIQSCPVDAIIG-------------AAKHMHTIFSKLCTGCDLCIKKC 648
+ KC+ C C+ +C + A+ C C CI C
Sbjct: 15 TVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIAC 74
Query: 649 PVNCISM 655
PV +S
Sbjct: 75 PVAALSE 81
Score = 31.0 bits (69), Expect = 0.079
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 599 CCAIIKENKCIGCTLCIQSCPVDAI 623
+ C+ C CI +CPV A+
Sbjct: 55 DEKCFDDTNCLLCGQCIIACPVAAL 79
Score = 27.5 bits (60), Expect = 1.7
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 638 CTGCDLCIKKCPVNCISMIEVTPCRTGW 665
C C C+ C N + + G
Sbjct: 21 CLLCGRCVNACGKNTETYAMKFLNKNGK 48
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId:
354]}
Length = 106
Score = 47.4 bits (112), Expect = 2e-07
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 601 AIIKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 658
A + + CI C C++ CPVD + I C C LC +CP I +
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEG-PNFLVIHPDECIDCALCEPECPAQAIFSED- 58
Query: 659 TPCRTGWDAWSQKKADDARKRY 680
+ Q A+ A
Sbjct: 59 -EVPEDMQEFIQLNAELAEVWP 79
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 47.6 bits (112), Expect = 3e-07
Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 28/88 (31%)
Query: 601 AIIKENKCIGCTLCIQSCPVDAIIGAA--------------------------KHMHTIF 634
CI C C CP AI+ K I
Sbjct: 14 PQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQIN 73
Query: 635 SKLCTGCDLCIKKCPVN--CISMIEVTP 660
+ C GC C CP + M +
Sbjct: 74 TLDCMGCGNCADICPPKEKALVMQPLDT 101
Score = 32.9 bits (74), Expect = 0.033
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 637 LCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKR 686
C C+ C CP + I + A + A +A+ + K
Sbjct: 20 NCIQCNQCAFVCPHSAILPVLAKEEELV-GAPANFTALEAKGKELKGYKF 68
Score = 32.2 bits (72), Expect = 0.058
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 566 CPTGGRKGIIKLAKYLNKPIIPLNTIY----GNEKSRCCAIIKENKCIGCTLCIQSCPVD 621
CP ++ + L + + + I C+GC C CP
Sbjct: 31 CPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPK 90
Query: 622 AI 623
Sbjct: 91 EK 92
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 45.1 bits (105), Expect = 2e-05
Identities = 29/278 (10%), Positives = 62/278 (22%), Gaps = 18/278 (6%)
Query: 8 IYDKYGNKLPQVITRFAPEPNGYLHIGHAKS-----IFINFELAYKYNGLCNLRFDDTNP 62
I + G K + + P+GY+H+G+ + I + Y +DD +
Sbjct: 10 IIRERGEK-EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDR 68
Query: 63 LKENKEYVNSII-----KTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVD 117
++ V I + W + + F+ + + A
Sbjct: 69 FRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASEL 128
Query: 118 SQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKN 177
+ E R + + N+ + R + + +
Sbjct: 129 YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWD 188
Query: 178 INMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEW 237
+ H + +DH
Sbjct: 189 GGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFE----PAGKDHLVAGSS 244
Query: 238 ILNKIDKTNFIKRPFPK---QYEFSRLNLTHTITSKRK 272
+ + YEF + S K
Sbjct: 245 YDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSK 282
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 40.5 bits (94), Expect = 1e-04
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 602 IIKENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKL-----CTGCDLCIKKCPVNC 652
I+ +CI C C++ + + + +HT + CPV
Sbjct: 80 ILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGA 139
Query: 653 I 653
+
Sbjct: 140 L 140
Score = 27.0 bits (59), Expect = 5.0
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 588 LNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII 624
L+ I + + CPV A++
Sbjct: 105 LDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALL 141
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 38.0 bits (88), Expect = 2e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 605 ENKCIGCT--LCIQSCPVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 654
E C + +CP A+ + + C C C CP +
Sbjct: 9 EAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 61
Score = 33.0 bits (75), Expect = 0.012
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 603 IKENKCIGCTLCIQSCPVDAII 624
+ KC+ C C CP +
Sbjct: 40 VDVEKCMYCGNCYTMCPGMPLF 61
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 38.9 bits (90), Expect = 0.002
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 606 NKCIGCTL--CIQSCPVDAIIGAAKHMHTIF-SKLCTGCDLCIKKCPVNCISMIEVTPCR 662
C C C+ +CP AI + + C G +CI CP I +
Sbjct: 182 RLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKS 241
Query: 663 TGWDAWSQKKAD 674
+
Sbjct: 242 EKCIFCYPRIEA 253
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 602 IIKENKCIGCTLCIQSCPVDAII-----GAAKHMHTIFSKLCTG-CDLCIKKCPVNCI 653
+I ++KC G +CI CP I G ++ + ++ G +C + C
Sbjct: 211 LIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIR 268
Score = 32.0 bits (72), Expect = 0.26
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 602 IIKENKCIGCTLCIQSCPVDAI 623
++ +KCIGC C +C
Sbjct: 10 VLNLDKCIGCHTCSVTCKNVWT 31
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 35.3 bits (80), Expect = 0.023
Identities = 32/282 (11%), Positives = 68/282 (24%), Gaps = 35/282 (12%)
Query: 25 PEPNGYLHIGHA-----KSIFINFELAYKYNGLCNLRFDD-------------TNPLKEN 66
P P+G LH+GH + F Y L + +D +P
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWT 101
Query: 67 KEYVNSIIKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNT----- 121
+ ++++ + +D ++ +Y+ I + G AY
Sbjct: 102 YANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK 161
Query: 122 -----EEIYINRGNLHEPGRNSPFYNRLPS--ESLNLFRRMRSGEFKDGAHVLRVKINMK 174
+ G L + + + + +VK +
Sbjct: 162 CQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQR 221
Query: 175 SKNINMRDPIIYRIRHVNH-----YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQ 229
+ +RD +I R R+ + P + + D +
Sbjct: 222 AWIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPL 281
Query: 230 DHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKR 271
+ P + + F T
Sbjct: 282 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPH 323
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 31.8 bits (71), Expect = 0.24
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 600 CAIIKENKCIGCTLCIQSCPVDAII---GAAKHMHTIFSKLCTGCDL---CIKKCPVNCI 653
+ CIGC CI CP + + C+K CP I
Sbjct: 124 IVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAI 183
Score = 29.1 bits (64), Expect = 1.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 593 GNEKSRCCAIIKENKCIGCTLCIQSC 618
+ K+ +I + CIGC C +C
Sbjct: 23 RDYKAEVAKLIDVSTCIGCKACQVAC 48
Score = 27.5 bits (60), Expect = 4.7
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 6/112 (5%)
Query: 561 ANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPV 620
+ +N + + + +E + + + GC C +
Sbjct: 49 SEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCL 108
Query: 621 DAIIGAAKHMHT------IFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 666
A A + S+ C GC CI CP N + +
Sbjct: 109 KACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCT 160
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 31.9 bits (71), Expect = 0.26
Identities = 24/225 (10%), Positives = 60/225 (26%), Gaps = 16/225 (7%)
Query: 3 RIFCFIYDKYGNKLPQVITRFAPEPNGYLHIGHA-----KSIFINFELAYKYNGLCNLRF 57
+ +K ++ P NG LH+GHA K + ++ + +
Sbjct: 35 DQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94
Query: 58 DDTNPLKENKEYVNSIIK----TIKWLNFNWDKVKKRIYYASDYFDIL----YKIAEYLI 109
D E + + T ++ + ++I F L Y+
Sbjct: 95 DTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYIT 154
Query: 110 ISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRV 169
+ + ++G +++ + PS +L +
Sbjct: 155 LKPEYEAAQIRIFGEMADKGLIYKGKK---PVYWSPSSESSLAEAEIEYPHDWRTKKPVI 211
Query: 170 KINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 214
++ + + + NW +Y+ +
Sbjct: 212 FRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGE 256
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 31.8 bits (71), Expect = 0.28
Identities = 48/354 (13%), Positives = 91/354 (25%), Gaps = 27/354 (7%)
Query: 3 RIFCFIYDKYGNKLPQVITRFAPEPNGYLHIGHA-----KSIFINFELAYKYNGLCNLRF 57
+IF + + P NG H+GHA K +F ++ Y +
Sbjct: 25 KIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84
Query: 58 DDT-NPLKENKEYVNSIIKTIKWLNFNWDKVKKRI-YYASDYFDILYKIAEYLIISGDAY 115
D P++ E + + + ++ + Y E + D
Sbjct: 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE 144
Query: 116 VDSQNTEEIYINRGNLHEPGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKS 175
E YI L R + + K + R + S
Sbjct: 145 DAYATLEPTYIESIWW--------SLKNLF------DRGLLYRDHKVVPYCPRCGTPLSS 190
Query: 176 KNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFY 235
+ + P +R Y +W I + + I N +
Sbjct: 191 HEVALGYPHCWRCSTPLMYYATESWFIK-NTLFKDEL---IRNNQEIHWVPPHIKEGRYG 246
Query: 236 EWILNKIDKTNFIKRPF--PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTL 293
EW+ N +D R + P + + LK K + DP P +
Sbjct: 247 EWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYV 306
Query: 294 IGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLN 347
+ +++ I V + L + + +
Sbjct: 307 DQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIA 360
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 31.8 bits (71), Expect = 0.31
Identities = 25/250 (10%), Positives = 59/250 (23%), Gaps = 26/250 (10%)
Query: 24 APEPNGYLHIGHAKSIFINFELAYKYNGLCN-LRFDDTNPLKENKEYVN----SIIKTIK 78
+P H GH +S I L N ++ N Y+
Sbjct: 16 SPNIAKPFHAGHLRSTIIG-------GFLANLYEKLGWEVIRMN--YLGDWGKQFGLLAV 66
Query: 79 WLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNS 138
++ FD+ +I + + GD+ Q+T E G
Sbjct: 67 GFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD-- 124
Query: 139 PFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNN 198
++ + V + I + +
Sbjct: 125 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDK 184
Query: 199 NWCIYPMYDYAHPISDAIENITHS--------ICTLEFQDHRPFYEWILNKID--KTNFI 248
+ + + + AI + + + + ++ ++ I +
Sbjct: 185 GAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA 244
Query: 249 KRPFPKQYEF 258
+ F +
Sbjct: 245 AQFFEILKQM 254
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/107 (13%), Positives = 27/107 (25%), Gaps = 11/107 (10%)
Query: 151 LFRRMRSGEFKD-----GAHVLRVKINMKSKNINMRDPIIYRIRHVNHYR------TNNN 199
LF R+ +G+++D K+N N +
Sbjct: 16 LFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 75
Query: 200 WCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTN 246
+ + + D E + + + P NK D
Sbjct: 76 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
562]}
Length = 416
Score = 28.8 bits (64), Expect = 2.5
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 475 ALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 534
S D ++D + IV + + N+ +++ A +E + FE
Sbjct: 134 QWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAV------HFEDQ 187
Query: 535 LLPQTQCTKCGYPGCRQYAEAIANKKA 561
L +C G EAI A
Sbjct: 188 LASVKKCGHMGGKVLVPTQEAIQKLVA 214
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 28.1 bits (61), Expect = 2.9
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 11/78 (14%)
Query: 602 IIKENKCIGCTLCIQSC------PVDAIIGAAKHMHTIFSKL-----CTGCDLCIKKCPV 650
+I KC C C C A+ + + T I P
Sbjct: 7 VIDVAKCQDCNNCFMGCMDEHELNEWPGYTASMQRGHRWMNIERRERGTYPRNDINYRPT 66
Query: 651 NCISMIEVTPCRTGWDAW 668
C+ G A
Sbjct: 67 PCMHCENAPCVAKGNGAV 84
Score = 28.1 bits (61), Expect = 3.1
Identities = 6/54 (11%), Positives = 12/54 (22%)
Query: 614 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDA 667
+ A+ + I + G + CP + E
Sbjct: 75 PCVAKGNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKCTM 128
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 28.4 bits (62), Expect = 3.1
Identities = 23/232 (9%), Positives = 56/232 (24%), Gaps = 7/232 (3%)
Query: 25 PEPNGYLHIGHAKSIFINFELAYKYNGLCNLRFDDTNPLKENKEYVNSIIKTIKWLNFNW 84
HIGH ++ F+ F++ +Y LRF + K IK N N
Sbjct: 30 ITVYDLCHIGHGRT-FVAFDVVARY-----LRFLGYKLKYVR-NITDIDDKIIKRANENG 82
Query: 85 DKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHEPGRNSPFYNRL 144
+ + + L + E I + + + +
Sbjct: 83 ESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDV 142
Query: 145 PSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYP 204
+ ++++ N D +++++ + W
Sbjct: 143 MFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGR 202
Query: 205 MYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQY 256
+ + + + + F T + +
Sbjct: 203 PGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYW 254
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 27.5 bits (60), Expect = 4.3
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 133 EPGRNSPFYNRLPSESLNLFRRMRSG----EFKDGAHVLRVKINMKSKNINMRDPIIYRI 188
E + L E+ R +G ++ G + L +KI + I +I
Sbjct: 20 EETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI 79
Query: 189 RHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTL 226
H N C+ + D + + + S+ L
Sbjct: 80 WHPNISSVTGAICLDILKDQWAA-AMTLRTVLLSLQAL 116
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 28.1 bits (61), Expect = 4.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 25 PEPNGYLHIGHAKSIFINFELAYKY 49
P NG +H GH ++ ++ +Y
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRY 35
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (57), Expect = 4.9
Identities = 9/57 (15%), Positives = 29/57 (50%)
Query: 677 RKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELKNKENK 733
R+ + + +++ +E K ++ L+ + + N + + +++ A I ++ +E K
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 369
Score = 27.8 bits (61), Expect = 5.4
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 280 KIVDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 310
++ +G +D P LI + RR +T +K
Sbjct: 294 RVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 326
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase
(ValRS) {Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 27.6 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 7 FIYDKYGNKLPQVITRFAPEPNGYLHIGHA 36
F+ + K P VI P G LH+GHA
Sbjct: 25 FVANPKSGKPPFVIFMPPPNVTGSLHMGHA 54
>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
small subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 214
Score = 27.2 bits (59), Expect = 6.3
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 602 IIKENKCIGCTLCIQSC 618
+ +C C C +C
Sbjct: 5 FVDTTRCTACRGCQVAC 21
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 27.2 bits (59), Expect = 7.8
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query: 24 APEPNGYLHIGHAKSIFINFELAYKYNGLCN-LRFDDTNPLKENKEYVN-------SIIK 75
+ PN LH+GH ++I + + + L + L N Y++ +
Sbjct: 15 SVNPNKELHVGHLRNIALG-------DAIARILAYAGREVLVLN--YIDDTGRQAAETLF 65
Query: 76 TIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYI 126
++ WD +K ++A + L++ EY + E +
Sbjct: 66 ALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL 116
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 26.9 bits (58), Expect = 8.2
Identities = 24/234 (10%), Positives = 50/234 (21%), Gaps = 6/234 (2%)
Query: 20 ITRFAPEPNGYLHIGHAKS-----IFINFELAYKYNGLCNLRFDDTNPLKENK-EYVNSI 73
+T N H+GHA + + Y D+ +
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGED 66
Query: 74 IKTIKWLNFNWDKVKKRIYYASDYFDILYKIAEYLIISGDAYVDSQNTEEIYINRGNLHE 133
K K + + I + + +IY
Sbjct: 67 PKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLY 126
Query: 134 PGRNSPFYNRLPSESLNLFRRMRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNH 193
FY R E + + + IR +
Sbjct: 127 CVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGY 186
Query: 194 YRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 247
P+ D + + + E +++ +LN + ++
Sbjct: 187 RNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY 240
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 26.6 bits (58), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 422 RYGYVVECTGFKKNKNNEVVEVYCKYFPDSK 452
Y V + KK NE+VE + KYF +SK
Sbjct: 105 WYKIYVPYSSVKKKNRNELVEEFMKYFFESK 135
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 25.7 bits (56), Expect = 9.7
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 523 IFPKKHAQFEQNLLPQTQ-CTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYL 581
+ P++H Q +LP Q + G LA
Sbjct: 28 LCPREHTQ---RILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGA 84
Query: 582 NKPIIPLNTI 591
P+I ++T+
Sbjct: 85 ELPMIGVSTL 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,994,279
Number of extensions: 155088
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 110
Length of query: 736
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 644
Effective length of database: 1,144,436
Effective search space: 737016784
Effective search space used: 737016784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)