Query psy9411
Match_columns 118
No_of_seqs 130 out of 1031
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:30:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0316 sufA Fe-S cluster asse 100.0 2.1E-41 4.5E-46 222.7 14.1 109 8-116 2-110 (110)
2 PRK13623 iron-sulfur cluster i 100.0 1.3E-40 2.8E-45 221.4 13.9 110 7-116 6-115 (115)
3 PRK09502 iscA iron-sulfur clus 100.0 7.6E-40 1.7E-44 215.3 13.6 107 9-116 1-107 (107)
4 PRK09504 sufA iron-sulfur clus 100.0 1.8E-39 3.8E-44 218.0 14.1 114 2-116 9-122 (122)
5 TIGR02011 IscA iron-sulfur clu 100.0 1.4E-38 3.1E-43 208.6 13.3 105 11-116 1-105 (105)
6 PLN03082 Iron-sulfur cluster a 100.0 1.7E-38 3.7E-43 222.0 13.3 110 8-117 52-163 (163)
7 TIGR01997 sufA_proteo FeS asse 100.0 4.9E-38 1.1E-42 206.7 13.7 106 10-116 2-107 (107)
8 TIGR00049 Iron-sulfur cluster 100.0 4.6E-37 9.9E-42 200.9 13.2 105 12-116 1-105 (105)
9 KOG1120|consensus 100.0 9.3E-33 2E-37 182.8 9.7 108 8-116 27-134 (134)
10 KOG1119|consensus 100.0 6.6E-30 1.4E-34 178.6 10.2 108 7-117 90-198 (199)
11 TIGR01911 HesB_rel_seleno HesB 100.0 1.1E-28 2.4E-33 158.2 11.1 91 9-100 2-92 (92)
12 PRK11190 Fe/S biogenesis prote 100.0 2.5E-28 5.4E-33 174.8 13.0 96 10-106 1-98 (192)
13 TIGR03341 YhgI_GntY IscR-regul 100.0 2.1E-27 4.5E-32 169.9 12.9 95 11-106 1-97 (190)
14 PF01521 Fe-S_biosyn: Iron-sul 99.9 1.5E-26 3.2E-31 152.5 9.5 101 9-112 1-112 (112)
15 COG4841 Uncharacterized protei 99.8 6E-19 1.3E-23 110.3 7.4 88 9-99 1-94 (95)
16 COG4918 Uncharacterized protei 99.3 1.9E-11 4.2E-16 78.5 6.8 92 9-102 1-94 (114)
17 COG3564 Uncharacterized protei 97.9 0.00015 3.3E-09 46.6 8.8 91 7-103 3-99 (116)
18 PF05610 DUF779: Protein of un 97.3 0.0045 9.6E-08 39.7 8.5 78 21-104 3-86 (95)
19 cd01234 PH_CADPS CADPS (Ca2+-d 63.7 5.9 0.00013 26.1 1.9 19 74-92 45-63 (117)
20 COG1395 Predicted transcriptio 57.9 75 0.0016 24.8 7.3 73 12-100 52-124 (313)
21 KOG3348|consensus 54.2 52 0.0011 20.6 4.9 37 17-55 4-40 (85)
22 KOG4777|consensus 54.2 14 0.00031 28.4 2.8 39 66-104 114-152 (361)
23 COG4647 AcxC Acetone carboxyla 52.8 8.1 0.00018 26.4 1.2 20 97-116 61-81 (165)
24 PF10571 UPF0547: Uncharacteri 48.4 11 0.00023 18.3 0.9 14 102-115 11-25 (26)
25 cd03063 TRX_Fd_FDH_beta TRX-li 47.5 37 0.00081 21.5 3.6 26 17-47 19-44 (92)
26 PF04019 DUF359: Protein of un 46.1 36 0.00077 22.7 3.5 27 12-42 45-71 (121)
27 COG1909 Uncharacterized protei 45.2 37 0.00081 24.0 3.6 28 11-42 89-116 (167)
28 KOG0633|consensus 44.0 58 0.0013 25.3 4.7 50 9-63 314-367 (375)
29 COG5216 Uncharacterized conser 43.5 11 0.00025 22.1 0.7 21 96-116 11-33 (67)
30 COG0608 RecJ Single-stranded D 43.1 91 0.002 25.4 6.1 103 9-115 17-157 (491)
31 PRK01160 hypothetical protein; 42.0 43 0.00093 23.9 3.6 30 12-42 95-124 (178)
32 COG3369 Zinc finger domain con 41.8 9.7 0.00021 23.5 0.2 10 106-115 32-41 (78)
33 PRK10178 D-alanyl-D-alanine di 41.6 61 0.0013 23.2 4.3 36 3-38 32-67 (184)
34 PF07610 DUF1573: Protein of u 41.2 19 0.0004 19.4 1.3 7 105-111 18-24 (45)
35 PF11950 DUF3467: Protein of u 41.0 36 0.00077 21.4 2.8 25 4-28 55-79 (92)
36 PF07305 DUF1454: Protein of u 38.9 1.1E+02 0.0024 22.2 5.3 36 15-50 142-183 (200)
37 COG0694 Thioredoxin-like prote 37.4 17 0.00037 23.2 0.9 9 105-113 50-59 (93)
38 PF13913 zf-C2HC_2: zinc-finge 37.2 15 0.00032 17.4 0.4 10 107-116 4-14 (25)
39 PF11146 DUF2905: Protein of u 36.6 50 0.0011 19.6 2.7 21 57-77 29-49 (64)
40 TIGR03831 YgiT_finger YgiT-typ 35.9 61 0.0013 16.8 2.9 30 84-114 12-42 (46)
41 PF00096 zf-C2H2: Zinc finger, 35.6 7.1 0.00015 17.5 -0.9 9 108-116 3-12 (23)
42 PF01402 RHH_1: Ribbon-helix-h 35.0 43 0.00093 16.9 2.1 22 9-30 2-23 (39)
43 COG5134 Uncharacterized conser 33.3 79 0.0017 23.5 3.8 54 20-76 60-114 (272)
44 PF11858 DUF3378: Domain of un 33.1 61 0.0013 20.0 2.8 37 9-45 3-41 (81)
45 PF13709 DUF4159: Domain of un 32.9 70 0.0015 23.1 3.6 35 10-50 64-98 (207)
46 smart00704 ZnF_CDGSH CDGSH-typ 31.9 21 0.00046 18.8 0.5 21 96-116 5-25 (38)
47 KOG1667|consensus 31.9 45 0.00097 25.5 2.4 38 8-45 110-151 (320)
48 PF13177 DNA_pol3_delta2: DNA 31.8 60 0.0013 22.2 3.0 25 12-39 113-137 (162)
49 PF02697 DUF217: Uncharacteriz 31.7 50 0.0011 19.9 2.2 16 10-25 3-18 (71)
50 TIGR02385 RelE_StbE addiction 31.6 53 0.0011 19.3 2.4 18 10-27 1-18 (88)
51 TIGR03829 YokU_near_AblA uncha 30.6 89 0.0019 19.8 3.3 20 95-115 26-46 (89)
52 PRK01194 V-type ATP synthase s 29.5 68 0.0015 22.7 3.0 39 67-105 119-157 (185)
53 PF15643 Tox-PL-2: Papain fold 28.6 1.7E+02 0.0037 19.0 5.8 55 14-74 21-75 (100)
54 PF14135 DUF4302: Domain of un 28.4 1.9E+02 0.0042 21.1 5.3 40 15-55 15-55 (235)
55 PF11850 DUF3370: Protein of u 27.3 1.8E+02 0.0039 23.8 5.2 43 48-93 343-386 (441)
56 KOG2923|consensus 27.1 26 0.00056 20.9 0.4 12 106-117 23-34 (67)
57 COG5014 Predicted Fe-S oxidore 26.9 42 0.0009 24.3 1.5 63 15-83 77-142 (228)
58 COG2026 RelE Cytotoxic transla 26.6 60 0.0013 20.2 2.0 17 7-23 1-17 (90)
59 PF09360 zf-CDGSH: Iron-bindin 26.5 34 0.00074 18.0 0.8 11 106-116 20-30 (38)
60 PF00634 BRCA2: BRCA2 repeat; 25.4 18 0.0004 18.8 -0.4 20 9-28 14-33 (35)
61 COG1117 PstB ABC-type phosphat 25.1 1.3E+02 0.0029 22.6 3.9 43 61-113 5-47 (253)
62 PRK13696 hypothetical protein; 24.8 1E+02 0.0022 18.2 2.6 16 7-22 2-17 (62)
63 PF01106 NifU: NifU-like domai 24.5 1.2E+02 0.0025 17.9 2.9 15 15-29 2-16 (68)
64 KOG1085|consensus 23.7 3.3E+02 0.0073 21.3 5.9 62 9-76 234-295 (392)
65 COG1753 Predicted antotoxin, c 23.3 1.1E+02 0.0023 18.7 2.5 19 8-26 3-21 (74)
66 PF03852 Vsr: DNA mismatch end 23.2 67 0.0014 19.7 1.7 31 46-76 35-65 (75)
67 TIGR00357 methionine-R-sulfoxi 23.1 1.7E+02 0.0038 19.9 3.9 43 33-76 84-126 (134)
68 TIGR01566 ZF_HD_prot_N ZF-HD h 23.0 38 0.00083 19.3 0.6 11 107-117 41-51 (53)
69 PF04770 ZF-HD_dimer: ZF-HD pr 23.0 37 0.00081 19.9 0.5 11 107-117 45-55 (60)
70 KOG4449|consensus 23.0 58 0.0013 18.5 1.3 18 11-28 1-18 (53)
71 PF10346 Con-6: Conidiation pr 22.9 1E+02 0.0022 16.1 2.2 19 11-29 17-35 (36)
72 PF13798 PCYCGC: Protein of un 22.5 39 0.00085 23.7 0.7 12 103-114 75-86 (158)
73 COG0358 DnaG DNA primase (bact 22.1 61 0.0013 27.0 1.8 20 94-113 44-64 (568)
74 PF13894 zf-C2H2_4: C2H2-type 22.1 29 0.00062 15.0 -0.0 9 108-116 3-12 (24)
75 TIGR00053 addiction module tox 22.0 96 0.0021 18.7 2.4 18 9-26 2-19 (89)
76 PF13465 zf-H2C2_2: Zinc-finge 22.0 21 0.00045 16.8 -0.6 10 106-115 15-25 (26)
77 PF02557 VanY: D-alanyl-D-alan 21.4 1.3E+02 0.0028 19.7 3.0 26 12-37 3-28 (132)
78 smart00355 ZnF_C2H2 zinc finge 21.2 45 0.00097 14.4 0.5 9 108-116 3-12 (26)
79 PF09035 Tn916-Xis: Excisionas 21.2 1.7E+02 0.0037 17.4 3.2 25 5-29 8-38 (67)
80 cd00729 rubredoxin_SM Rubredox 21.0 88 0.0019 15.8 1.7 17 96-112 9-26 (34)
81 PF14685 Tricorn_PDZ: Tricorn 20.9 53 0.0012 20.6 1.0 36 57-92 40-80 (88)
82 PF05171 HemS: Haemin-degradin 20.7 2.6E+02 0.0056 18.3 5.2 86 10-100 16-112 (129)
83 KOG0064|consensus 20.6 1.2E+02 0.0026 26.0 3.2 41 64-113 482-522 (728)
84 PF10162 G8: G8 domain; Inter 20.5 1.4E+02 0.0031 19.5 3.1 20 57-76 9-28 (125)
85 PF12141 DUF3589: Protein of u 20.2 45 0.00098 27.6 0.7 9 106-114 355-363 (498)
86 COG1370 Prefoldin, molecular c 20.2 1.9E+02 0.0042 20.2 3.6 54 9-67 60-121 (155)
87 COG1660 Predicted P-loop-conta 20.1 1.8E+02 0.0038 22.4 3.7 37 19-65 149-185 (286)
88 PF09012 FeoC: FeoC like trans 20.0 1.4E+02 0.003 17.3 2.6 30 9-41 22-51 (69)
No 1
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-41 Score=222.69 Aligned_cols=109 Identities=52% Similarity=0.966 Sum_probs=105.3
Q ss_pred CcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411 8 NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID 87 (118)
Q Consensus 8 ~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID 87 (118)
.++|+||++|++++++++++++.++.+|||+|+++||+|++|+|.|++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus 2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID 81 (110)
T COG0316 2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID 81 (110)
T ss_pred CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence 58999999999999999999966678999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 88 YKDDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
|.++..+++|+|+|||++.+||||+||++
T Consensus 82 yv~~~~g~~F~~~NPNA~~~CgCg~Sf~v 110 (110)
T COG0316 82 YVEDLLGSGFTFKNPNAKSSCGCGESFSV 110 (110)
T ss_pred EEEcCcCCceEEECCCCCccccCCCCCCC
Confidence 99999999999999999999999999974
No 2
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=100.00 E-value=1.3e-40 Score=221.38 Aligned_cols=110 Identities=58% Similarity=1.078 Sum_probs=103.6
Q ss_pred CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411 7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI 86 (118)
Q Consensus 7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I 86 (118)
++|+|+||++|+++|+++++.++.++.+|||+++++||+|++|+|.++++++++|++++.+|++|+||+.+++||+|++|
T Consensus 6 ~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I 85 (115)
T PRK13623 6 VPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV 85 (115)
T ss_pred cCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence 46999999999999999998766545679999999999999999999988899999999999999999999999999999
Q ss_pred EEEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 87 DYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 87 Dy~~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
||.++..+++|+|+|||++++||||+||++
T Consensus 86 Dy~~~~~~~~F~f~NPn~~~~CgCg~SF~~ 115 (115)
T PRK13623 86 DYTEGLEGSRFVIKNPNAKTTCGCGSSFSI 115 (115)
T ss_pred EeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence 999999999999999999999999999985
No 3
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=100.00 E-value=7.6e-40 Score=215.27 Aligned_cols=107 Identities=33% Similarity=0.710 Sum_probs=100.9
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY 88 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy 88 (118)
|+|+|||+|+++|+++++.++. ..+|||+++++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus 1 m~i~iT~~A~~~i~~l~~~~~~-~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy 79 (107)
T PRK09502 1 MSITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDF 79 (107)
T ss_pred CeEEECHHHHHHHHHHHhCcCC-CceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEE
Confidence 6799999999999999987653 568999999999999999999987889999999999999999999999999999999
Q ss_pred EeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 89 KDDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 89 ~~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
.+++.+++|+|+|||++++||||+||++
T Consensus 80 ~~~~~~~~F~f~NPna~~~CgCG~Sf~~ 107 (107)
T PRK09502 80 VKEGLNEGFKFTNPNVKDECGCGESFHV 107 (107)
T ss_pred eeCCCCceEEEECCCCCCccCCCCCeeC
Confidence 9999999999999999999999999974
No 4
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=217.97 Aligned_cols=114 Identities=29% Similarity=0.538 Sum_probs=105.9
Q ss_pred CccCCCCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhc
Q psy9411 2 NENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYL 81 (118)
Q Consensus 2 ~~~~~~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l 81 (118)
+++...+|+|+|||+|+++|+++++.++. ..+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||
T Consensus 9 ~~~~~~~~~I~iT~~A~~~i~~l~~~~~~-~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L 87 (122)
T PRK09504 9 NPDDFAWQGLTLTPAAAAHIRELMAKQPG-MKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFI 87 (122)
T ss_pred ccCcCCcCCEEECHHHHHHHHHHHhcCCC-CceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhh
Confidence 44556689999999999999999987653 46899999999999999999998889999999999999999999999999
Q ss_pred cCcEEEEEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 82 IGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 82 ~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
+|++|||.++..+++|+|.|||++++||||+||++
T Consensus 88 ~g~~IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v 122 (122)
T PRK09504 88 DGTEVDYVREGLNQIFKFHNPKAQNECGCGESFGV 122 (122)
T ss_pred CCcEEEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence 99999999999999999999999999999999974
No 5
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=100.00 E-value=1.4e-38 Score=208.57 Aligned_cols=105 Identities=36% Similarity=0.733 Sum_probs=99.4
Q ss_pred eeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEEe
Q psy9411 11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKD 90 (118)
Q Consensus 11 I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~~ 90 (118)
|+|||+|+++|++++++++. +.+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||.+
T Consensus 1 I~iT~~A~~~i~~~~~~~~~-~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~ 79 (105)
T TIGR02011 1 ITLTDSAAARVNTFLANRGK-GFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVK 79 (105)
T ss_pred CEECHHHHHHHHHHHhccCC-CceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEec
Confidence 78999999999999987653 46899999999999999999998778999999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 91 DLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 91 ~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
+..+++|+|+|||++++||||+||++
T Consensus 80 ~~~~~~F~~~nPna~~~CgCg~Sf~~ 105 (105)
T TIGR02011 80 EGLNEGFKFTNPNVKDECGCGESFHV 105 (105)
T ss_pred CCCcceEEEECCCCCccCCCCCCccC
Confidence 99999999999999999999999974
No 6
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=100.00 E-value=1.7e-38 Score=221.96 Aligned_cols=110 Identities=38% Similarity=0.758 Sum_probs=103.1
Q ss_pred CcceeeCHHHHHHHHHHHHhcCC-CCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411 8 NISITLTEVAIKKVSHLIKKKGN-LNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI 86 (118)
Q Consensus 8 ~~~I~IT~~A~~~l~~~~~~~~~-~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I 86 (118)
.+.|+|||+|+++|+++++.++. ++.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++|
T Consensus 52 ~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~I 131 (163)
T PLN03082 52 LDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATV 131 (163)
T ss_pred CCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEE
Confidence 35799999999999999988653 34689999999999999999999988889999999999999999999999999999
Q ss_pred EEEeCCCCceEEE-ecCCCCCCCCCCCCCCcC
Q psy9411 87 DYKDDLDGSKFVI-KNPNAVTTCGCGSSFSTY 117 (118)
Q Consensus 87 Dy~~~~~~~gF~i-~~p~~~~~CgCG~sf~~~ 117 (118)
||.+++.+++|+| .|||++++||||+||++|
T Consensus 132 DYve~l~~~gF~f~~NPna~~~CgCG~SF~vk 163 (163)
T PLN03082 132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK 163 (163)
T ss_pred EeecCCCCCeeEEecCCCCCCCcCCCCCEeCC
Confidence 9999999999999 999999999999999985
No 7
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=100.00 E-value=4.9e-38 Score=206.66 Aligned_cols=106 Identities=27% Similarity=0.608 Sum_probs=100.3
Q ss_pred ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEE
Q psy9411 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYK 89 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~ 89 (118)
+|+|||+|+++|+++++.++. ..+|||+++++||+|++|.|.+.++++++|.+++.+|++|+||+.++.||+|++|||.
T Consensus 2 ~i~iT~~A~~~i~~l~~~~~~-~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~ 80 (107)
T TIGR01997 2 VITLTDAAAIHIRELVAKRPE-AVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFV 80 (107)
T ss_pred eEEECHHHHHHHHHHHhcCCC-CcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEE
Confidence 599999999999999987653 4689999999999999999999878899999999999999999999999999999999
Q ss_pred eCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 90 DDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 90 ~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
++..+++|+|+|||++++||||+||++
T Consensus 81 ~~~~~~~F~~~NPn~~~~CgCG~Sf~~ 107 (107)
T TIGR01997 81 RTTLRQGFKFNNPNATSACGCGESFEL 107 (107)
T ss_pred EcCCcceEEEECCCCCCccCCCCCccC
Confidence 999999999999999999999999974
No 8
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=100.00 E-value=4.6e-37 Score=200.94 Aligned_cols=105 Identities=51% Similarity=0.939 Sum_probs=99.4
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEEeC
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDD 91 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~~~ 91 (118)
+||++|+++|+++++.++.++.+|||+++.+||+|++|+|.++++++++|++++.+|++|+||+.+++||+|++|||.++
T Consensus 1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~ 80 (105)
T TIGR00049 1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE 80 (105)
T ss_pred CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence 69999999999999887654578999999999999999999998789999999999999999999999999999999999
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 92 LDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 92 ~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
..+++|+|+|||+.++||||+||++
T Consensus 81 ~~~~~f~i~nPn~~~~c~cg~sf~~ 105 (105)
T TIGR00049 81 LLGSGFTFTNPNAKGTCGCGKSFSV 105 (105)
T ss_pred CCcceEEEECCCCCccCCCCcCccC
Confidence 9999999999999999999999984
No 9
>KOG1120|consensus
Probab=100.00 E-value=9.3e-33 Score=182.79 Aligned_cols=108 Identities=36% Similarity=0.705 Sum_probs=102.8
Q ss_pred CcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411 8 NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID 87 (118)
Q Consensus 8 ~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID 87 (118)
+.-||+||.|+++|+++++++++ ...|||.|+..||+|++|.|.+.+.+...|++++.+|++|+||++++..+-|+++|
T Consensus 27 k~~ltLTp~Av~~ik~ll~~~~e-~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMD 105 (134)
T KOG1120|consen 27 KAALTLTPSAVNHIKQLLSDKPE-DVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMD 105 (134)
T ss_pred ccccccCHHHHHHHHHHHHhCCc-CceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccceeh
Confidence 57899999999999999998765 57999999999999999999999888899999999999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411 88 YKDDLDGSKFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~ 116 (118)
|+++...++|+|.|||+++.||||+||++
T Consensus 106 yvddkL~Sefvf~npna~gtcGcgeSf~~ 134 (134)
T KOG1120|consen 106 YVDDKLSSEFVFSNPNAKGTCGCGESFSV 134 (134)
T ss_pred hhhhhhcCceEeeCCCccccccccccccC
Confidence 99999999999999999999999999974
No 10
>KOG1119|consensus
Probab=99.96 E-value=6.6e-30 Score=178.56 Aligned_cols=108 Identities=38% Similarity=0.742 Sum_probs=101.5
Q ss_pred CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411 7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI 86 (118)
Q Consensus 7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I 86 (118)
....+.|++.|.++++++.+..+ ..|||.|++|||+|++|.+.+|....++|.+++.+|.+|+||..++.|++|++|
T Consensus 90 ~~~~~~lsds~~krl~EI~~~~p---e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatv 166 (199)
T KOG1119|consen 90 PGFNLHLSDSCSKRLKEIYENSP---EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATV 166 (199)
T ss_pred CCceEEehhHHHHHHHHHHhCCc---ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCcee
Confidence 34679999999999999998764 589999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEE-ecCCCCCCCCCCCCCCcC
Q psy9411 87 DYKDDLDGSKFVI-KNPNAVTTCGCGSSFSTY 117 (118)
Q Consensus 87 Dy~~~~~~~gF~i-~~p~~~~~CgCG~sf~~~ 117 (118)
||.+++.+++|++ .||.++.+|+||+||.+|
T Consensus 167 dy~~ELIrSsF~ivnNP~A~~gCsCgSSF~ik 198 (199)
T KOG1119|consen 167 DYTNELIRSSFRIVNNPSAKQGCSCGSSFDIK 198 (199)
T ss_pred ehHHHHhhhhheeecCcccccCCCCCcccccC
Confidence 9999999999987 579999999999999986
No 11
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.96 E-value=1.1e-28 Score=158.24 Aligned_cols=91 Identities=22% Similarity=0.361 Sum_probs=84.4
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY 88 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy 88 (118)
.+|+|||+|+++|++++++++.+..+|||+|.++||+|++|.|.+++ +.++|.+++.+|++|+||+.++.||.|++|||
T Consensus 2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy 80 (92)
T TIGR01911 2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC 80 (92)
T ss_pred CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence 47999999999999999887654457999999999999999999987 58999999999999999999999999999999
Q ss_pred EeCCCCceEEEe
Q psy9411 89 KDDLDGSKFVIK 100 (118)
Q Consensus 89 ~~~~~~~gF~i~ 100 (118)
.++..+++|+|+
T Consensus 81 ~~~~~g~gF~~~ 92 (92)
T TIGR01911 81 AEENFGAGFSLD 92 (92)
T ss_pred ecCCCCCcEEeC
Confidence 999999999984
No 12
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.96 E-value=2.5e-28 Score=174.84 Aligned_cols=96 Identities=26% Similarity=0.465 Sum_probs=89.8
Q ss_pred ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEE--ccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMF--DEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID 87 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~--~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID 87 (118)
||+||++|+++|++++++++. +.+|||+|+++||+|++|++.| ++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus 1 ~i~iTd~A~~~i~~ll~~~~~-~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~ID 79 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQEE-GTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEID 79 (192)
T ss_pred CcEECHHHHHHHHHHHhcCCC-CceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEE
Confidence 589999999999999987653 4689999999999999999999 6778899999999999999999999999999999
Q ss_pred EEeCCCCceEEEecCCCCC
Q psy9411 88 YKDDLDGSKFVIKNPNAVT 106 (118)
Q Consensus 88 y~~~~~~~gF~i~~p~~~~ 106 (118)
|.++..+++|+|+|||++.
T Consensus 80 yve~~~g~gF~f~NPNa~~ 98 (192)
T PRK11190 80 FVTDQLGSQLTLKAPNAKM 98 (192)
T ss_pred EeecCCCCceEEECCCCCC
Confidence 9999999999999999974
No 13
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.95 E-value=2.1e-27 Score=169.94 Aligned_cols=95 Identities=27% Similarity=0.425 Sum_probs=88.5
Q ss_pred eeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEE--ccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411 11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMF--DEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY 88 (118)
Q Consensus 11 I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~--~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy 88 (118)
|+||++|+++|+++++.++ ++.+|||+|+++||+|++|+|.+ .++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus 1 I~IT~~A~~~l~~ll~~~~-~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDy 79 (190)
T TIGR03341 1 ITITEAAQAYLAKLLAKQN-EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDF 79 (190)
T ss_pred CEECHHHHHHHHHHHhhCC-CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEE
Confidence 6899999999999998765 45689999999999999999999 56688999999999999999999999999999999
Q ss_pred EeCCCCceEEEecCCCCC
Q psy9411 89 KDDLDGSKFVIKNPNAVT 106 (118)
Q Consensus 89 ~~~~~~~gF~i~~p~~~~ 106 (118)
.++..+++|+|+|||++.
T Consensus 80 ve~~~g~gF~f~NPna~~ 97 (190)
T TIGR03341 80 VTDRMGGQLTLKAPNAKM 97 (190)
T ss_pred eecCCCceeEEeCCccCC
Confidence 999999999999999864
No 14
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.94 E-value=1.5e-26 Score=152.53 Aligned_cols=101 Identities=39% Similarity=0.788 Sum_probs=92.9
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCC--------CC-CeEEEEEEccCC-CCCCeEEEeCCEEEEEcccch
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGG--------CS-GFQYGFMFDEHT-NKDDIIFKKNGIQLLIDSVSY 78 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~G--------C~-G~~~~l~~~~~~-~~~D~v~~~~gi~v~id~~~~ 78 (118)
|.|+||++|+++|++++.+++. . |||+++.+| |+ |++|.|.+++++ .+.|.+++.+|++|+|++.++
T Consensus 1 M~I~iT~~A~~~l~~~~~~~~~--~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~ 77 (112)
T PF01521_consen 1 MKITITDAAAERLKQLLKEDPK--K-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSL 77 (112)
T ss_dssp -EEEE-HHHHHHHHHHHHCTTE--S-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGH
T ss_pred CEEEECHHHHHHHHHHHhcCCC--E-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHh
Confidence 8999999999999999998763 2 999999998 99 999999999877 899999999999999999999
Q ss_pred hhc-cCcEEEEEeCCCCceEEEecCCCCCCCCCCC
Q psy9411 79 QYL-IGSEIDYKDDLDGSKFVIKNPNAVTTCGCGS 112 (118)
Q Consensus 79 ~~l-~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~ 112 (118)
+|| ++++|||.++..+.+|++.||+..+.|+||.
T Consensus 78 ~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~ 112 (112)
T PF01521_consen 78 WYLDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD 112 (112)
T ss_dssp HHH-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred hhhhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence 999 8999999999989999999999999999983
No 15
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=6e-19 Score=110.29 Aligned_cols=88 Identities=25% Similarity=0.448 Sum_probs=75.0
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCC----CeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC-
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCS----GFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG- 83 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~----G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g- 83 (118)
|+|+||++|.+|+++.+...+ +..||++++.|||+ |++.+++.+. |+|--...+.+|++|+|+.+++||+++
T Consensus 1 Mni~vtd~A~~wfk~E~~l~~--g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d~ 77 (95)
T COG4841 1 MNIEVTDQALKWFKEELDLEE--GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDDH 77 (95)
T ss_pred CceEEcHHHHHHHHHhcCCCC--CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcCC
Confidence 889999999999999998876 57899999999998 5555555432 667556668999999999999999998
Q ss_pred -cEEEEEeCCCCceEEE
Q psy9411 84 -SEIDYKDDLDGSKFVI 99 (118)
Q Consensus 84 -~~IDy~~~~~~~gF~i 99 (118)
++|||.++.+...|..
T Consensus 78 d~~v~y~~~~Dei~fs~ 94 (95)
T COG4841 78 DLKVDYSPDTDEISFSY 94 (95)
T ss_pred cEEEeccCCCCcceeec
Confidence 9999999888777764
No 16
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=1.9e-11 Score=78.55 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=72.0
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCC-eEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC-cEE
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSG-FQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG-SEI 86 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G-~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g-~~I 86 (118)
|.|++|++|+++|++...........+|...++.||.+ -.+.+++.++.+..|..++.++.++++-.....||++ ++|
T Consensus 1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti 80 (114)
T COG4918 1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI 80 (114)
T ss_pred CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence 78999999999999887665433456777777777753 2466777666678899999999999999999999987 999
Q ss_pred EEEeCCCCceEEEecC
Q psy9411 87 DYKDDLDGSKFVIKNP 102 (118)
Q Consensus 87 Dy~~~~~~~gF~i~~p 102 (118)
||.+.. ....+++|
T Consensus 81 dyN~~~--ktl~LkS~ 94 (114)
T COG4918 81 DYNPSY--KTLELKST 94 (114)
T ss_pred ecCCcc--ceEEEcCh
Confidence 999875 44555544
No 17
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.00015 Score=46.65 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=64.9
Q ss_pred CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccC---CCCCCeEE-EeCCEEEEEcccchhhcc
Q psy9411 7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEH---TNKDDIIF-KKNGIQLLIDSVSYQYLI 82 (118)
Q Consensus 7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~---~~~~D~v~-~~~gi~v~id~~~~~~l~ 82 (118)
+...++.|++|++-|.++..+.+ .| +|-..+||+.-+--|.+... ..++|+.+ +.+|++|||......+-+
T Consensus 3 ~~~~V~aT~aAl~Li~~l~~~hg----pv-mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWK 77 (116)
T COG3564 3 MPARVLATPAALDLIAELQAEHG----PV-MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWK 77 (116)
T ss_pred CCcceecCHHHHHHHHHHHHhcC----CE-EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhh
Confidence 56778999999999999988875 23 44456888622333444221 24666655 689999999998887776
Q ss_pred C--cEEEEEeCCCCceEEEecCC
Q psy9411 83 G--SEIDYKDDLDGSKFVIKNPN 103 (118)
Q Consensus 83 g--~~IDy~~~~~~~gF~i~~p~ 103 (118)
. ++||-++.. |+.|.+.|-.
T Consensus 78 HTqLIIDVVpGR-GGmFSLdng~ 99 (116)
T COG3564 78 HTQLIIDVVPGR-GGMFSLDNGR 99 (116)
T ss_pred ccEEEEEEecCC-CceeEccCCc
Confidence 4 899999876 5679888643
No 18
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=97.27 E-value=0.0045 Score=39.67 Aligned_cols=78 Identities=22% Similarity=0.468 Sum_probs=55.0
Q ss_pred HHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccC---CCCCCeEE-EeCCEEEEEcccchhhccC--cEEEEEeCCCC
Q psy9411 21 VSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEH---TNKDDIIF-KKNGIQLLIDSVSYQYLIG--SEIDYKDDLDG 94 (118)
Q Consensus 21 l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~---~~~~D~v~-~~~gi~v~id~~~~~~l~g--~~IDy~~~~~~ 94 (118)
|+++.++.+ .| ++-..+||+.-+-=+.+... ..+.|+.+ +..|++|||.++...|.+. ++||-++.. +
T Consensus 3 i~~L~~~HG----~l-mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~Gr-G 76 (95)
T PF05610_consen 3 IRRLKAKHG----PL-MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPGR-G 76 (95)
T ss_pred HHHHHHhcC----CE-EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEecC-C
Confidence 455555554 23 34456888733444555421 44677655 7899999999999999997 899998855 5
Q ss_pred ceEEEecCCC
Q psy9411 95 SKFVIKNPNA 104 (118)
Q Consensus 95 ~gF~i~~p~~ 104 (118)
.+|.+.+|..
T Consensus 77 ~~FSLE~~~G 86 (95)
T PF05610_consen 77 GGFSLEAPEG 86 (95)
T ss_pred CeeeccCCCC
Confidence 8899998875
No 19
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.72 E-value=5.9 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=13.6
Q ss_pred cccchhhccCcEEEEEeCC
Q psy9411 74 DSVSYQYLIGSEIDYKDDL 92 (118)
Q Consensus 74 d~~~~~~l~g~~IDy~~~~ 92 (118)
+|.....|+|-||||.+..
T Consensus 45 ~P~e~~qldGyTvDy~~~~ 63 (117)
T cd01234 45 EPTEFIQLDGYTVDYMPES 63 (117)
T ss_pred CchhheeecceEEeccCCC
Confidence 4555677888888888654
No 20
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=57.87 E-value=75 Score=24.75 Aligned_cols=73 Identities=15% Similarity=0.234 Sum_probs=53.4
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEEeC
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDD 91 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~~~ 91 (118)
+|++.+++.|+++...-. +..|-+..+.. .++-++.+|+.-.|++++-......|+.|-..=...+
T Consensus 52 ~l~~e~a~eLkkla~~l~--aspivVg~r~~------------~~~LE~GVVY~R~gV~~vs~~Tf~~~~~Ge~P~v~a~ 117 (313)
T COG1395 52 GLSRETAEELKKLAKSLL--ASPIVVGLRTK------------NEPLEDGVVYERYGVPAVSPETFYDYVEGEPPYVYAA 117 (313)
T ss_pred ccCHHHHHHHHHHHHHhC--CCceEEEEecC------------CCccccceEEEecCceeeCHHHHHHHhCCCCceEEec
Confidence 578999999999987655 35566655543 2356888999999999999999899999855544444
Q ss_pred CCCceEEEe
Q psy9411 92 LDGSKFVIK 100 (118)
Q Consensus 92 ~~~~gF~i~ 100 (118)
. +||.++
T Consensus 118 r--GG~yV~ 124 (313)
T COG1395 118 R--GGFYVK 124 (313)
T ss_pred C--CeEEEE
Confidence 3 466553
No 21
>KOG3348|consensus
Probab=54.22 E-value=52 Score=20.64 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEcc
Q psy9411 17 AIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDE 55 (118)
Q Consensus 17 A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~ 55 (118)
+.++|.+++.+.=. ...|++.=..+||++ .|.+.+..
T Consensus 4 ~e~~l~~~L~~~l~-p~~v~V~D~SgGCG~-~F~v~IvS 40 (85)
T KOG3348|consen 4 TEERLEELLTEALE-PEHVEVQDVSGGCGS-MFDVVIVS 40 (85)
T ss_pred hHHHHHHHHHhhcC-ceEEEEEEcCCCccc-eEEEEEEc
Confidence 56778888877643 356777667799976 58777754
No 22
>KOG4777|consensus
Probab=54.16 E-value=14 Score=28.40 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=35.0
Q ss_pred eCCEEEEEcccchhhccCcEEEEEeCCCCceEEEecCCC
Q psy9411 66 KNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNA 104 (118)
Q Consensus 66 ~~gi~v~id~~~~~~l~g~~IDy~~~~~~~gF~i~~p~~ 104 (118)
.+|++++|+.---..|+++.+-.++...+.||.|.|||-
T Consensus 114 e~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNC 152 (361)
T KOG4777|consen 114 EDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNC 152 (361)
T ss_pred CCCCceEecccCHHHhhhheeccccCCCCCceEEecCCC
Confidence 468999999998899999998888888999999999985
No 23
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.84 E-value=8.1 Score=26.40 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=13.9
Q ss_pred EEEecCCC-CCCCCCCCCCCc
Q psy9411 97 FVIKNPNA-VTTCGCGSSFST 116 (118)
Q Consensus 97 F~i~~p~~-~~~CgCG~sf~~ 116 (118)
|+..+|.. -..|.||.||.-
T Consensus 61 fi~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEEecccccEEEEeccccccC
Confidence 55555544 248999999974
No 24
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.38 E-value=11 Score=18.27 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=10.0
Q ss_pred CCCCCCCC-CCCCCC
Q psy9411 102 PNAVTTCG-CGSSFS 115 (118)
Q Consensus 102 p~~~~~Cg-CG~sf~ 115 (118)
|.....|. ||.+|.
T Consensus 11 ~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 11 PESAKFCPHCGYDFE 25 (26)
T ss_pred hhhcCcCCCCCCCCc
Confidence 34446887 999986
No 25
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=47.47 E-value=37 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEeCCCCCCe
Q psy9411 17 AIKKVSHLIKKKGNLNLKLRVFIQGGGCSGF 47 (118)
Q Consensus 17 A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~ 47 (118)
-.+.|++.+++++ |++.+...||-|+
T Consensus 19 V~~al~~ei~~~g-----l~v~v~~tGC~G~ 44 (92)
T cd03063 19 VAEAIEAEAAARG-----LAATIVRNGSRGM 44 (92)
T ss_pred HHHHHHHHHHHcC-----CeEEEEEecCcee
Confidence 3455666665543 3788888999886
No 26
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=46.12 E-value=36 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.0
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEEEEeCC
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGG 42 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~ 42 (118)
+||+++.+.|++.+... ...+|.|++.
T Consensus 45 ~It~el~~ai~~a~~~~----~~~~I~V~GE 71 (121)
T PF04019_consen 45 TITEELIEAIKKALESG----KPVVIFVDGE 71 (121)
T ss_pred cccHHHHHHHHHHHhCC----CCEEEEEeCh
Confidence 79999999999997663 4688998864
No 27
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.21 E-value=37 Score=24.00 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=22.8
Q ss_pred eeeCHHHHHHHHHHHHhcCCCCccEEEEEeCC
Q psy9411 11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGG 42 (118)
Q Consensus 11 I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~ 42 (118)
=+||..|.+.|++.+.. +..+||+|++.
T Consensus 89 GtIt~el~~ai~~a~~~----~k~~~I~V~GE 116 (167)
T COG1909 89 GTITFELIKAIEKALED----GKRVRIFVDGE 116 (167)
T ss_pred cEeEHHHHHHHHHHHhc----CCcEEEEEeCh
Confidence 37999999999999655 35789999864
No 28
>KOG0633|consensus
Probab=43.97 E-value=58 Score=25.26 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=35.3
Q ss_pred cceeeC----HHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeE
Q psy9411 9 ISITLT----EVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDII 63 (118)
Q Consensus 9 ~~I~IT----~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v 63 (118)
.-|.|| ..|++.+++++...+ ..+|+.-...||.|. ..+.... +.++++.
T Consensus 314 iLi~v~~~~n~~akkly~q~at~~g---VvVRfrgse~~c~G~-lRitvGt-~EentvL 367 (375)
T KOG0633|consen 314 ILIEVTGGDNGMAKKLYKQDATKMG---VVVRFRGSEEGCKGY-LRITVGT-PEENTVL 367 (375)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhcc---eEEEEcCCcccccee-EEEEcCC-cccchHH
Confidence 456776 566777777777664 789999988999996 5566654 4566654
No 29
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=43.51 E-value=11 Score=22.09 Aligned_cols=21 Identities=24% Similarity=0.667 Sum_probs=13.1
Q ss_pred eEEEecCCC--CCCCCCCCCCCc
Q psy9411 96 KFVIKNPNA--VTTCGCGSSFST 116 (118)
Q Consensus 96 gF~i~~p~~--~~~CgCG~sf~~ 116 (118)
.|+|..-+. .-.|.||-.|.+
T Consensus 11 dftf~~e~~~ftyPCPCGDRFeI 33 (67)
T COG5216 11 DFTFSREEKTFTYPCPCGDRFEI 33 (67)
T ss_pred eeEEcCCCceEEecCCCCCEeEE
Confidence 355543222 347999999875
No 30
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=43.09 E-value=91 Score=25.37 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=58.1
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCC--------------CeEEEEEEccCCCCCC-----eEEEeCCE
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCS--------------GFQYGFMFDEHTNKDD-----IIFKKNGI 69 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~--------------G~~~~l~~~~~~~~~D-----~v~~~~gi 69 (118)
..+.=-+.|++++.+.+.+++ .|+|+.....-+ |+.+.+.+.....++- ...+..++
T Consensus 17 ~~l~~~~~a~~~i~~ai~~~~----~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~l 92 (491)
T COG0608 17 FLLKDMEKAAARIAEAIEKGE----KILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADL 92 (491)
T ss_pred HHHhhHHHHHHHHHHHHHcCC----EEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCE
Confidence 334444678888888887653 588887643222 5567777765444432 12233456
Q ss_pred EEEEcccc-----hhh-----ccCcEEEEEeCCC--CceEEEecCCCC-------CCCCCCCCCC
Q psy9411 70 QLLIDSVS-----YQY-----LIGSEIDYKDDLD--GSKFVIKNPNAV-------TTCGCGSSFS 115 (118)
Q Consensus 70 ~v~id~~~-----~~~-----l~g~~IDy~~~~~--~~gF~i~~p~~~-------~~CgCG~sf~ 115 (118)
-+++|--+ ..+ ++=+++|+..... .....+.||+.. ..||||.+|-
T Consensus 93 iItvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~~p~~~~ivNP~~~~~~~~~~~lag~gv~f~ 157 (491)
T COG0608 93 IITVDNGSGSLEEIARAKELGIDVIVTDHHPPGEELPDAVAIVNPNLPGCDYPFKELAGVGVAFK 157 (491)
T ss_pred EEEECCCcccHHHHHHHHhCCCcEEEECCCCCCCCCCCceEEECCCCCCCCCCchhhhhhhHHHH
Confidence 66666432 233 2227778872221 124688899874 3566776663
No 31
>PRK01160 hypothetical protein; Provisional
Probab=42.04 E-value=43 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=22.1
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEEEEeCC
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGG 42 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~ 42 (118)
+||+++.+.|++.++.... +..++|.|++.
T Consensus 95 tIt~el~~ai~~a~~~~~~-~~~~~I~VdGE 124 (178)
T PRK01160 95 TITLALLRAIKKAFSLIER-GKKVRIEVNGE 124 (178)
T ss_pred cccHHHHHHHHHHHHhhhc-CCeEEEEEcCh
Confidence 7999999999998653221 35688998754
No 32
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=41.76 E-value=9.7 Score=23.49 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q psy9411 106 TTCGCGSSFS 115 (118)
Q Consensus 106 ~~CgCG~sf~ 115 (118)
.-|+||.|=+
T Consensus 32 ~LCrCG~S~N 41 (78)
T COG3369 32 ALCRCGHSEN 41 (78)
T ss_pred EEEeccCcCC
Confidence 4699999855
No 33
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=41.63 E-value=61 Score=23.22 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=23.9
Q ss_pred ccCCCCcceeeCHHHHHHHHHHHHhcCCCCccEEEE
Q psy9411 3 ENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVF 38 (118)
Q Consensus 3 ~~~~~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~ 38 (118)
+.|......-+++.|+++|++....-..++..|+|+
T Consensus 32 ~~iY~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~ 67 (184)
T PRK10178 32 KPIYREARCLLHKDAEAALRKAVSIAQLAGLTLRIY 67 (184)
T ss_pred CccccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 345556778899999999988776643323444443
No 34
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=41.22 E-value=19 Score=19.43 Aligned_cols=7 Identities=57% Similarity=1.474 Sum_probs=5.1
Q ss_pred CCCCCCC
Q psy9411 105 VTTCGCG 111 (118)
Q Consensus 105 ~~~CgCG 111 (118)
..+|||=
T Consensus 18 ~tsCgCt 24 (45)
T PF07610_consen 18 QTSCGCT 24 (45)
T ss_pred eEccCCE
Confidence 4689983
No 35
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=41.03 E-value=36 Score=21.37 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=19.9
Q ss_pred cCCCCcceeeCHHHHHHHHHHHHhc
Q psy9411 4 NVKNNISITLTEVAIKKVSHLIKKK 28 (118)
Q Consensus 4 ~~~~~~~I~IT~~A~~~l~~~~~~~ 28 (118)
.+.....|.+||.++++|...|.+.
T Consensus 55 ~~~v~sRVimsP~~AKrL~~aL~~~ 79 (92)
T PF11950_consen 55 EAKVSSRVIMSPQHAKRLLKALQQN 79 (92)
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHH
Confidence 3445567999999999999998753
No 36
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=38.93 E-value=1.1e+02 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcCC------CCccEEEEEeCCCCCCeEEE
Q psy9411 15 EVAIKKVSHLIKKKGN------LNLKLRVFIQGGGCSGFQYG 50 (118)
Q Consensus 15 ~~A~~~l~~~~~~~~~------~~~~lRi~v~~~GC~G~~~~ 50 (118)
++..+++.+++..... ..+.||..|...|--|+.|.
T Consensus 142 eQs~~kl~~lL~~gk~~~yy~q~~GAiRYVvad~gekglTFA 183 (200)
T PF07305_consen 142 EQSQEKLQKLLTKGKGSRYYSQTEGAIRYVVADNGEKGLTFA 183 (200)
T ss_pred HHHHHHHHHHHHcCCCCcceeeccCceEEEEecCCCceeEEE
Confidence 4667788888866432 12345555555555554443
No 37
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=17 Score=23.19 Aligned_cols=9 Identities=56% Similarity=1.058 Sum_probs=5.8
Q ss_pred CCCC-CCCCC
Q psy9411 105 VTTC-GCGSS 113 (118)
Q Consensus 105 ~~~C-gCG~s 113 (118)
.++| ||++|
T Consensus 50 ~GaC~gC~sS 59 (93)
T COG0694 50 GGACSGCPSS 59 (93)
T ss_pred CCcCCCCccc
Confidence 4677 47776
No 38
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=37.20 E-value=15 Score=17.42 Aligned_cols=10 Identities=40% Similarity=1.198 Sum_probs=7.4
Q ss_pred CCC-CCCCCCc
Q psy9411 107 TCG-CGSSFST 116 (118)
Q Consensus 107 ~Cg-CG~sf~~ 116 (118)
.|. ||.+|..
T Consensus 4 ~C~~CgR~F~~ 14 (25)
T PF13913_consen 4 PCPICGRKFNP 14 (25)
T ss_pred cCCCCCCEECH
Confidence 464 9999974
No 39
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=36.56 E-value=50 Score=19.58 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.5
Q ss_pred CCCCCeEEEeCCEEEEEcccc
Q psy9411 57 TNKDDIIFKKNGIQLLIDSVS 77 (118)
Q Consensus 57 ~~~~D~v~~~~gi~v~id~~~ 77 (118)
.-|+|..++.+|.++|.+=.+
T Consensus 29 rLPGDi~i~~~~~~fyfPi~s 49 (64)
T PF11146_consen 29 RLPGDIRIRRGNFTFYFPITS 49 (64)
T ss_pred CCCccEEEEECCEEEEEehHH
Confidence 469999999999999987543
No 40
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=35.92 E-value=61 Score=16.78 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCceEEEecCCCCCCCC-CCCCC
Q psy9411 84 SEIDYKDDLDGSKFVIKNPNAVTTCG-CGSSF 114 (118)
Q Consensus 84 ~~IDy~~~~~~~gF~i~~p~~~~~Cg-CG~sf 114 (118)
.+.++.-...+.-+++.|-.+ -.|. ||+.+
T Consensus 12 ~~~~~~~~~~~~~~~i~~vp~-~~C~~CGE~~ 42 (46)
T TIGR03831 12 KTTTETYEYGGELIVIENVPA-LVCPQCGEEY 42 (46)
T ss_pred eEEEEEEEeCCEEEEEeCCCc-cccccCCCEe
Confidence 333444444344556655222 3675 88875
No 41
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=35.57 E-value=7.1 Score=17.49 Aligned_cols=9 Identities=67% Similarity=1.516 Sum_probs=6.4
Q ss_pred CC-CCCCCCc
Q psy9411 108 CG-CGSSFST 116 (118)
Q Consensus 108 Cg-CG~sf~~ 116 (118)
|. ||.+|..
T Consensus 3 C~~C~~~f~~ 12 (23)
T PF00096_consen 3 CPICGKSFSS 12 (23)
T ss_dssp ETTTTEEESS
T ss_pred CCCCCCccCC
Confidence 54 8888874
No 42
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=35.00 E-value=43 Score=16.94 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.0
Q ss_pred cceeeCHHHHHHHHHHHHhcCC
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGN 30 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~ 30 (118)
+.|+|++.-.++|.++....+.
T Consensus 2 iti~l~~~~~~~l~~~a~~~g~ 23 (39)
T PF01402_consen 2 ITIRLPDELYERLDELAKELGR 23 (39)
T ss_dssp EEEEEEHHHHHHHHHHHHHHTS
T ss_pred eEEEeCHHHHHHHHHHHHHHCc
Confidence 5789999999999999988764
No 43
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=79 Score=23.54 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCC-ccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEccc
Q psy9411 20 KVSHLIKKKGNLN-LKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSV 76 (118)
Q Consensus 20 ~l~~~~~~~~~~~-~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~ 76 (118)
..++++.++.-.+ ..-|+.+.-.||+-. +.+-.+|..+|.|++.+|++=+.+..
T Consensus 60 avkE~~~dK~y~~~kiYRf~I~C~~C~n~---i~~RTDPkN~~YV~EsGg~R~i~pq~ 114 (272)
T COG5134 60 AVKEEIGDKSYYTTKIYRFSIKCHLCSNP---IDVRTDPKNTEYVVESGGRRKIEPQD 114 (272)
T ss_pred HHHHHhcccccceeEEEEEEEEccCCCCc---eeeecCCCCceEEEecCceeecCccc
Confidence 3455565543211 345888888888754 44545578999999999998665543
No 44
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=33.10 E-value=61 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=25.2
Q ss_pred cceeeCHHHHHHHHHHHHhcCC--CCccEEEEEeCCCCC
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGN--LNLKLRVFIQGGGCS 45 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~--~~~~lRi~v~~~GC~ 45 (118)
.-|++|+...++|+..+..... ...+.++..+..||.
T Consensus 3 ~vlkl~~~~i~~l~~~y~~~~~~~~~p~~~f~aK~~~~t 41 (81)
T PF11858_consen 3 IVLKLTSEQIEKLKKYYKPYLTSSKPPYAVFQAKYNGVT 41 (81)
T ss_dssp EEEE--HHHHHHHHHHSTT-B-SS--TTEEEEEEETTEE
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCCCEEEEEeCCCeE
Confidence 4588999999999999854322 235789999988875
No 45
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=32.86 E-value=70 Score=23.06 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=24.3
Q ss_pred ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEE
Q psy9411 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYG 50 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~ 50 (118)
.+.+|+++++.|++.|... .. |.++...|++..+.
T Consensus 64 ~~~~s~~e~~~Lr~Yl~~G----Gf--l~~D~~~~~~~~~~ 98 (207)
T PF13709_consen 64 DFPLSDEEIANLRRYLENG----GF--LLFDDRDCGSAGFD 98 (207)
T ss_pred CCCCCHHHHHHHHHHHHcC----CE--EEEECCCccccccc
Confidence 4589999999999999763 23 34445557655443
No 46
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=31.92 E-value=21 Score=18.84 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=12.7
Q ss_pred eEEEecCCCCCCCCCCCCCCc
Q psy9411 96 KFVIKNPNAVTTCGCGSSFST 116 (118)
Q Consensus 96 gF~i~~p~~~~~CgCG~sf~~ 116 (118)
.|.+.....---|+||.|=+.
T Consensus 5 ~~~~e~~~~~~lC~C~~S~~~ 25 (38)
T smart00704 5 EVEVEKREKYALCRCGRSKNF 25 (38)
T ss_pred EEEecCCCEEEEeeCCCCCCC
Confidence 345544333458999998653
No 47
>KOG1667|consensus
Probab=31.92 E-value=45 Score=25.48 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=25.3
Q ss_pred CcceeeCHHHHHHHHHHHHhcCC--CCccEEEEE--eCCCCC
Q psy9411 8 NISITLTEVAIKKVSHLIKKKGN--LNLKLRVFI--QGGGCS 45 (118)
Q Consensus 8 ~~~I~IT~~A~~~l~~~~~~~~~--~~~~lRi~v--~~~GC~ 45 (118)
...+.|||.+...|++.+.++.. +...|||.. +..||+
T Consensus 110 ~~~~~~tp~isaale~~l~~kkea~q~~~I~iGtsCkN~GCs 151 (320)
T KOG1667|consen 110 NLNVEVTPGISAALEKALKEKKEAAQSADIQIGTSCKNNGCS 151 (320)
T ss_pred ccCcccCcchhHHHHHHHHhcchhhcCcCceeCCcccCCCcc
Confidence 34455999999999988874332 123488865 457776
No 48
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.79 E-value=60 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=18.3
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEEEE
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRVFI 39 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v 39 (118)
.+|++|++.|++.+++.+. ..++.+
T Consensus 113 ~l~~~a~NaLLK~LEepp~---~~~fiL 137 (162)
T PF13177_consen 113 KLTEEAQNALLKTLEEPPE---NTYFIL 137 (162)
T ss_dssp GS-HHHHHHHHHHHHSTTT---TEEEEE
T ss_pred hhhHHHHHHHHHHhcCCCC---CEEEEE
Confidence 3589999999999999863 445544
No 49
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.68 E-value=50 Score=19.88 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=14.6
Q ss_pred ceeeCHHHHHHHHHHH
Q psy9411 10 SITLTEVAIKKVSHLI 25 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~ 25 (118)
.|+|++.|.++|+.+-
T Consensus 3 tIsIsdevY~rL~~~K 18 (71)
T PF02697_consen 3 TISISDEVYERLKKLK 18 (71)
T ss_pred eEEecHHHHHHHHHHh
Confidence 5899999999999887
No 50
>TIGR02385 RelE_StbE addiction module toxin, RelE/StbE family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all are found adjacent to RelB/DinJ family antitoxin genes (TIGR02384), as are most genes found by the resulting model. StbE from Morganella morganii plasmid R485 shows typical behaviour for an addiction module toxin. It cannot be cloned without its partner (the antitoxin), whereas its partner cannot confer plasmid stability without StbE.
Probab=31.63 E-value=53 Score=19.25 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=13.9
Q ss_pred ceeeCHHHHHHHHHHHHh
Q psy9411 10 SITLTEVAIKKVSHLIKK 27 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~~~ 27 (118)
+|.+|+.|.+.|+++...
T Consensus 1 ~i~~t~~A~~dl~~i~~~ 18 (88)
T TIGR02385 1 KIVYTEQFKKDLKKIKKY 18 (88)
T ss_pred CceECHHHHHHHHHHHhh
Confidence 367889998888887654
No 51
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=30.63 E-value=89 Score=19.79 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=13.5
Q ss_pred ceEEEecCCCCCCCC-CCCCCC
Q psy9411 95 SKFVIKNPNAVTTCG-CGSSFS 115 (118)
Q Consensus 95 ~gF~i~~p~~~~~Cg-CG~sf~ 115 (118)
.-.+|+|-.+ -.|. ||.+|-
T Consensus 26 ~~IvIknVPa-~~C~~CGe~y~ 46 (89)
T TIGR03829 26 KAIEIKETPS-ISCSHCGMEYQ 46 (89)
T ss_pred eEEEEecCCc-ccccCCCcEee
Confidence 4466777444 4885 999874
No 52
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=29.54 E-value=68 Score=22.70 Aligned_cols=39 Identities=5% Similarity=0.033 Sum_probs=26.6
Q ss_pred CCEEEEEcccchhhccCcEEEEEeCCCCceEEEecCCCC
Q psy9411 67 NGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAV 105 (118)
Q Consensus 67 ~gi~v~id~~~~~~l~g~~IDy~~~~~~~gF~i~~p~~~ 105 (118)
++..|++.+.+...+....|-|.+...-+||++.+++.+
T Consensus 119 ~~~~v~~~~~D~~~i~~~~l~~~~~~~~GGvil~s~dG~ 157 (185)
T PRK01194 119 EDCIIKVSESDKKKINNAKIKFADIDPYGGILAYSRDGK 157 (185)
T ss_pred CCeEEEEcHHhHHHHHhCceeeCCccccccEEEEeCCCc
Confidence 455677777777777766666665445688999877653
No 53
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=28.55 E-value=1.7e+02 Score=18.95 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEc
Q psy9411 14 TEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLID 74 (118)
Q Consensus 14 T~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id 74 (118)
=.+-+++|++.|.+++.++..|||+.... - |+ | -+.+ .-..+..+..||...-|.
T Consensus 21 C~~cA~Al~~~L~~~gI~Gk~i~l~T~~~-~-~~-~--I~sd-~~~~~~sIt~NG~H~gI~ 75 (100)
T PF15643_consen 21 CVECASALKQFLKQAGIPGKIIRLYTGYH-E-GP-F--IYSD-RLGPQESITTNGRHYGIE 75 (100)
T ss_pred hHHHHHHHHHHHHHCCCCceEEEEEecCC-C-Cc-e--ehhh-hhcCCcceeeCCEEEEEE
Confidence 35667889999999998889999987521 2 22 2 2222 333345566677655544
No 54
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=28.38 E-value=1.9e+02 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEEEeCCC-CCCeEEEEEEcc
Q psy9411 15 EVAIKKVSHLIKKKGNLNLKLRVFIQGGG-CSGFQYGFMFDE 55 (118)
Q Consensus 15 ~~A~~~l~~~~~~~~~~~~~lRi~v~~~G-C~G~~~~l~~~~ 55 (118)
.++.++++++|...+. |..+-++..... =+|+.|-|.|.+
T Consensus 15 ~e~~~~~k~~L~~a~~-GW~~~yyp~~~~~~GGy~f~~kF~~ 55 (235)
T PF14135_consen 15 NEALAEYKKILTSAPN-GWKLEYYPKTDQSYGGYTFLMKFDD 55 (235)
T ss_pred HHHHHHHHHHHhcCCC-ceEEEEECCCCccCCcEEEEEEECC
Confidence 4566777778866553 566666665421 258899899865
No 55
>PF11850 DUF3370: Protein of unknown function (DUF3370); InterPro: IPR021801 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 452 to 532 amino acids in length.
Probab=27.28 E-value=1.8e+02 Score=23.78 Aligned_cols=43 Identities=21% Similarity=0.482 Sum_probs=32.4
Q ss_pred EEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC-cEEEEEeCCC
Q psy9411 48 QYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG-SEIDYKDDLD 93 (118)
Q Consensus 48 ~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g-~~IDy~~~~~ 93 (118)
...|.+.. |-..|. ..+|+.|+-.+....|+.| +.|.|.++..
T Consensus 343 tv~l~lqt-PiK~d~--~~~~L~F~~~p~~~vfFRGtVrv~y~d~~g 386 (441)
T PF11850_consen 343 TVTLTLQT-PIKEDK--SQDGLRFLEPPAGFVFFRGTVRVRYKDDQG 386 (441)
T ss_pred eEEEEEec-ccccCC--cCcceeeccCCCCceeEeeeEEEEeccCCC
Confidence 34555544 333444 4689999999999999999 9999998864
No 56
>KOG2923|consensus
Probab=27.13 E-value=26 Score=20.91 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.7
Q ss_pred CCCCCCCCCCcC
Q psy9411 106 TTCGCGSSFSTY 117 (118)
Q Consensus 106 ~~CgCG~sf~~~ 117 (118)
-.|.||-.|.+.
T Consensus 23 yPCpCGDrf~It 34 (67)
T KOG2923|consen 23 YPCPCGDRFQIT 34 (67)
T ss_pred cCCCCCCeeeec
Confidence 479999999865
No 57
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=26.90 E-value=42 Score=24.35 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEEEeCCCCC---CeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC
Q psy9411 15 EVAIKKVSHLIKKKGNLNLKLRVFIQGGGCS---GFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG 83 (118)
Q Consensus 15 ~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~---G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g 83 (118)
...+++|+++.+..+ ...+|| +||- +...-+.+-+--.+.-.|++.||+-+=.|+.....|-+
T Consensus 77 ~eVaeRL~ei~K~~g--~d~vRi----SG~EP~l~~EHvlevIeLl~~~tFvlETNG~~~g~drslv~el~n 142 (228)
T COG5014 77 EEVAERLLEISKKRG--CDLVRI----SGAEPILGREHVLEVIELLVNNTFVLETNGLMFGFDRSLVDELVN 142 (228)
T ss_pred HHHHHHHHHHHHhcC--CcEEEe----eCCCccccHHHHHHHHHhccCceEEEEeCCeEEecCHHHHHHHhc
Confidence 467788999988876 457888 4553 22222222232246667889999999999998888865
No 58
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=26.56 E-value=60 Score=20.15 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.6
Q ss_pred CCcceeeCHHHHHHHHH
Q psy9411 7 NNISITLTEVAIKKVSH 23 (118)
Q Consensus 7 ~~~~I~IT~~A~~~l~~ 23 (118)
|...|.++++|.+.+++
T Consensus 1 m~y~v~~~~~a~k~lkk 17 (90)
T COG2026 1 MMYKVEIHPKALKELKK 17 (90)
T ss_pred CcEEEEECHHHHHHHHH
Confidence 34568899999988887
No 59
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=26.45 E-value=34 Score=17.97 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=5.5
Q ss_pred CCCCCCCCCCc
Q psy9411 106 TTCGCGSSFST 116 (118)
Q Consensus 106 ~~CgCG~sf~~ 116 (118)
.-|.||.|=+.
T Consensus 20 ~lC~Cg~S~~~ 30 (38)
T PF09360_consen 20 ALCRCGKSKNK 30 (38)
T ss_dssp EE-SSS--TTT
T ss_pred EEecCCCCCCC
Confidence 47999988653
No 60
>PF00634 BRCA2: BRCA2 repeat; InterPro: IPR002093 The breast cancer type 2 susceptibility protein has a number of 39 amino acid repeats [] that are critical for binding to RAD51 (a key protein in DNA recombinational repair) and resistance to methyl methanesulphonate treatment [, , ]. BRCA2 is a breast tumour suppressor with a potential function in the cellular response to DNA damage. At the cellular level, expression is regulated in a cell-cycle dependent manner and peak expression of BRCA2 mRNA is found in S phase, suggesting BRCA2 may participate in regulating cell proliferation. There are eight repeats in BRCA2 designated as BRC1 to BRC8. BRC1, BRC2, BRC3, BRC4, BRC7, and BRC8 are highly conserved and bind to Rad51, whereas BRC5 and BRC6 are less well conserved and do not bind to Rad51 []. It has been suggested that BRCA2 plays a role in positioning Rad51 at the site of DNA repair or in removing Rad51 from DNA once repair has been completed. ; GO: 0005515 protein binding, 0006302 double-strand break repair; PDB: 1N0W_B.
Probab=25.44 E-value=18 Score=18.80 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=10.8
Q ss_pred cceeeCHHHHHHHHHHHHhc
Q psy9411 9 ISITLTEVAIKKVSHLIKKK 28 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~ 28 (118)
-.|.|+++|.++.+.++++.
T Consensus 14 k~v~VS~~sl~Kak~lf~d~ 33 (35)
T PF00634_consen 14 KKVSVSEESLQKAKKLFSDI 33 (35)
T ss_dssp -B----HHHHHHTTTTT---
T ss_pred CEEEEcHHHHHHHHHHhccc
Confidence 46889999999998888664
No 61
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.07 E-value=1.3e+02 Score=22.60 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred CeEEEeCCEEEEEcccchhhccCcEEEEEeCCCCceEEEecCCCCCCCCCCCC
Q psy9411 61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSS 113 (118)
Q Consensus 61 D~v~~~~gi~v~id~~~~~~l~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~s 113 (118)
..+++..++.+|.. ...-|+++.+|..+.. =..|-.|. |||+|
T Consensus 5 ~~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~---VTAlIGPS-----GcGKS 47 (253)
T COG1117 5 IPAIEVRDLNLYYG--DKHALKDINLDIPKNK---VTALIGPS-----GCGKS 47 (253)
T ss_pred cceeEecceeEEEC--chhhhccCceeccCCc---eEEEECCC-----CcCHH
Confidence 35677888999998 4567889999887653 23444554 56765
No 62
>PRK13696 hypothetical protein; Provisional
Probab=24.80 E-value=1e+02 Score=18.18 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.7
Q ss_pred CCcceeeCHHHHHHHH
Q psy9411 7 NNISITLTEVAIKKVS 22 (118)
Q Consensus 7 ~~~~I~IT~~A~~~l~ 22 (118)
+.-.|||++.|-+.|.
T Consensus 2 m~K~ItI~dd~Y~~L~ 17 (62)
T PRK13696 2 MMKTITISDDVYEKLL 17 (62)
T ss_pred CcceEEeCHHHHHHHH
Confidence 3457999999999998
No 63
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=24.47 E-value=1.2e+02 Score=17.86 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcC
Q psy9411 15 EVAIKKVSHLIKKKG 29 (118)
Q Consensus 15 ~~A~~~l~~~~~~~~ 29 (118)
++|.++++-.+...+
T Consensus 2 ~~~l~~IrP~L~~dG 16 (68)
T PF01106_consen 2 EEVLEEIRPYLQSDG 16 (68)
T ss_dssp HHHHHHCHHHHHHTT
T ss_pred HHHHHHhChHHHhcC
Confidence 356777888887765
No 64
>KOG1085|consensus
Probab=23.70 E-value=3.3e+02 Score=21.34 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=38.2
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEccc
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSV 76 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~ 76 (118)
..-.|.+++...|.+.+...-.++..+++ +.+-|- |. .-+....-+|.|+|+.|--+-|...
T Consensus 234 tk~~i~~E~~~~l~~~vl~g~~egl~~~~-~dgKGR-Gv----~a~~~F~rgdFVVEY~Gdliei~eA 295 (392)
T KOG1085|consen 234 TKKQISDEAKHALRDTVLKGTNEGLLEVY-KDGKGR-GV----RAKVNFERGDFVVEYRGDLIEISEA 295 (392)
T ss_pred hHHHhhHHHHHHHHHHHHhccccceeEEe-eccccc-ee----EeecccccCceEEEEecceeeechH
Confidence 34467899999999988766543333332 233332 32 2333456799999998866666443
No 65
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=23.27 E-value=1.1e+02 Score=18.72 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.0
Q ss_pred CcceeeCHHHHHHHHHHHH
Q psy9411 8 NISITLTEVAIKKVSHLIK 26 (118)
Q Consensus 8 ~~~I~IT~~A~~~l~~~~~ 26 (118)
.-.|+|++.|.++|.++-.
T Consensus 3 ~kTItI~ddvYe~L~kmK~ 21 (74)
T COG1753 3 TKTITISDDVYEKLVKMKR 21 (74)
T ss_pred cceeeecHHHHHHHHHHHc
Confidence 3579999999999998874
No 66
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=23.20 E-value=67 Score=19.70 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=18.3
Q ss_pred CeEEEEEEccCCCCCCeEEEeCCEEEEEccc
Q psy9411 46 GFQYGFMFDEHTNKDDIIFKKNGIQLLIDSV 76 (118)
Q Consensus 46 G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~ 76 (118)
|+.|-+....-+...|+++..-.+-|+||-.
T Consensus 35 G~RyR~~~~~lpG~PDiv~~~~k~aIFVdGC 65 (75)
T PF03852_consen 35 GLRYRLNRKDLPGKPDIVFPKYKIAIFVDGC 65 (75)
T ss_dssp T--EEES-TTSTT--SEEEGGGTEEEEEE-T
T ss_pred CCEEEEccCcCCCCCCEEECCCCEEEEEecc
Confidence 5556665555566788888888888888754
No 67
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=23.15 E-value=1.7e+02 Score=19.87 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=31.0
Q ss_pred ccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEccc
Q psy9411 33 LKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSV 76 (118)
Q Consensus 33 ~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~ 76 (118)
...|+-|.-..|++ .+|-.|.+.|++...-+-+|++-+...+.
T Consensus 84 gm~RtEv~C~~Cg~-HLGHVF~DGP~ptg~RyCINs~sL~F~p~ 126 (134)
T TIGR00357 84 GMIRTEVRCRNCDA-HLGHVFDDGPEPTGLRYCINSAALKFIPL 126 (134)
T ss_pred CcEEEEEEecCCCC-ccCcccCCCCCCCCceEeecceeEecccc
Confidence 46899998888876 68878877777777767677766555443
No 68
>TIGR01566 ZF_HD_prot_N ZF-HD homeobox protein Cys/His-rich dimerization domain. This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.
Probab=23.03 E-value=38 Score=19.27 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=9.0
Q ss_pred CCCCCCCCCcC
Q psy9411 107 TCGCGSSFSTY 117 (118)
Q Consensus 107 ~CgCG~sf~~~ 117 (118)
+|||=.+|+.+
T Consensus 41 ACgCHRnFHRr 51 (53)
T TIGR01566 41 ACGCHRNFHRK 51 (53)
T ss_pred ecCcccccccC
Confidence 78899999865
No 69
>PF04770 ZF-HD_dimer: ZF-HD protein dimerisation region; InterPro: IPR006456 The homeodomain (HD) is a 60-amino acid DNA-binding domain found in many transcription factors. HD-containing proteins are found in diverse organisms such as humans, Drosophila, nematode worms, and plants, where they play important roles in development. Zinc-finger-homeodomain (ZF- HD) subfamily proteins have only been identified in plants, and likely play plant specific roles. ZF-HD proteins are expressed predominantly or exclusively in floral tissue, indicating a likely regulatory role during floral development []. The ZF-HD class of homeodomain proteins may also be involved in the photosynthesis-related mesophyll-specific gene expression of phosphoenolpyruvate carboxylase in C4 species [] and in pathogen signaling and plant defense mechanisms []. These proteins share three domains of high sequence similarity: the homeodomain (II) located at the carboxy-terminus, and two other segments (Ia and Ib) located in the amino-terminal part. These N-terminal domains contain five conserved cysteine residues and at least three conserved histidine residues whose spacing ressembles zinc-binding domains involved in dimerization of transcription factors. Although the two domains contain at least eight potential zinc-binding amino-acids, the unique spacing of the conserved cysteine and histidine residues within domain Ib suggests that both domains form one rather than two zinc finger structures. The two conserved motifs Ia and Ib constitute a dimerization domain which is sufficient for the formation of homo- and heterodimers []. This entry represents the N-terminal Cysteine/Histidine-rich dimerization domain. The companion ZF-HD homeobox domain is described in IPR006455 from INTERPRO.
Probab=23.01 E-value=37 Score=19.91 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=9.1
Q ss_pred CCCCCCCCCcC
Q psy9411 107 TCGCGSSFSTY 117 (118)
Q Consensus 107 ~CgCG~sf~~~ 117 (118)
.|||=.+|+.|
T Consensus 45 ACgCHRnFHRr 55 (60)
T PF04770_consen 45 ACGCHRNFHRR 55 (60)
T ss_pred ccCcchhcccC
Confidence 78999999865
No 70
>KOG4449|consensus
Probab=22.98 E-value=58 Score=18.51 Aligned_cols=18 Identities=11% Similarity=0.292 Sum_probs=14.7
Q ss_pred eeeCHHHHHHHHHHHHhc
Q psy9411 11 ITLTEVAIKKVSHLIKKK 28 (118)
Q Consensus 11 I~IT~~A~~~l~~~~~~~ 28 (118)
++++++++++|.+++.-.
T Consensus 1 mklS~esKerl~k~~~is 18 (53)
T KOG4449|consen 1 MKLSEESKERLVKVFNIS 18 (53)
T ss_pred CccCHHHHHHHHHHeech
Confidence 368999999999988554
No 71
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=22.87 E-value=1e+02 Score=16.13 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.5
Q ss_pred eeeCHHHHHHHHHHHHhcC
Q psy9411 11 ITLTEVAIKKVSHLIKKKG 29 (118)
Q Consensus 11 I~IT~~A~~~l~~~~~~~~ 29 (118)
-.+|++|.+.-++.|++.+
T Consensus 17 PnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 17 PNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred CCcCHHHHHHHHHHHHHcc
Confidence 3679999999999987753
No 72
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=22.53 E-value=39 Score=23.69 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCC
Q psy9411 103 NAVTTCGCGSSF 114 (118)
Q Consensus 103 ~~~~~CgCG~sf 114 (118)
..+--||||.|-
T Consensus 75 ~iPCYCGCges~ 86 (158)
T PF13798_consen 75 YIPCYCGCGESA 86 (158)
T ss_pred cCCcccCCCCCC
Confidence 346689999753
No 73
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=22.14 E-value=61 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.752 Sum_probs=16.8
Q ss_pred CceEEEecCCCCCCC-CCCCC
Q psy9411 94 GSKFVIKNPNAVTTC-GCGSS 113 (118)
Q Consensus 94 ~~gF~i~~p~~~~~C-gCG~s 113 (118)
...|++..+.+-..| |||.+
T Consensus 44 tPSf~V~~~k~~yhCFGCg~~ 64 (568)
T COG0358 44 TPSFTVSPEKGFYHCFGCGAG 64 (568)
T ss_pred CCCceEeCCCCeEecCCCCCC
Confidence 467999888888888 89988
No 74
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.06 E-value=29 Score=14.97 Aligned_cols=9 Identities=56% Similarity=1.427 Sum_probs=4.6
Q ss_pred CC-CCCCCCc
Q psy9411 108 CG-CGSSFST 116 (118)
Q Consensus 108 Cg-CG~sf~~ 116 (118)
|. ||.+|..
T Consensus 3 C~~C~~~~~~ 12 (24)
T PF13894_consen 3 CPICGKSFRS 12 (24)
T ss_dssp -SSTS-EESS
T ss_pred CcCCCCcCCc
Confidence 54 8887763
No 75
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=22.02 E-value=96 Score=18.73 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.9
Q ss_pred cceeeCHHHHHHHHHHHH
Q psy9411 9 ISITLTEVAIKKVSHLIK 26 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~ 26 (118)
..|.+|+.|.+.++++-.
T Consensus 2 y~i~~~~~a~k~lkkl~~ 19 (89)
T TIGR00053 2 LKIEYSKQFDKDLKKLSK 19 (89)
T ss_pred cceEECHHHHHHHHHHHH
Confidence 568999999988888765
No 76
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=21.96 E-value=21 Score=16.83 Aligned_cols=10 Identities=60% Similarity=1.255 Sum_probs=6.7
Q ss_pred CCCC-CCCCCC
Q psy9411 106 TTCG-CGSSFS 115 (118)
Q Consensus 106 ~~Cg-CG~sf~ 115 (118)
-.|. |+.+|.
T Consensus 15 ~~C~~C~k~F~ 25 (26)
T PF13465_consen 15 YKCPYCGKSFS 25 (26)
T ss_dssp EEESSSSEEES
T ss_pred CCCCCCcCeeC
Confidence 4565 887775
No 77
>PF02557 VanY: D-alanyl-D-alanine carboxypeptidase; InterPro: IPR003709 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These proteins are metallopeptidases belonging to MEROPS peptidase family M15 (clan MD), subfamily M15B (vanY D-Ala-D-Ala carboxypeptidase) and M15C (Ply, L-alanyl-D-glutamate peptidase). Acquired VanA- and VanB-type glycopeptide resistance in enterococci is due to synthesis of modified peptidoglycan precursors terminating in D-lactate. As opposed to VanA-type strains which are resistant to both vancomycin and teicoplanin, VanB-type strains remain teicoplanin susceptible []. The vanY gene was necessary for synthesis of the vancomycin-inducible D,D-carboxypeptidase 3.4.16.4 from EC activity previously proposed to be responsible for glycopeptide resistance. However, this activity was not required for peptidoglycan synthesis in the presence of glycopeptides []. Bacteriophage lysins (Ply) or endolysins are phage-encoded cell wall lytic enzymes which are synthesised late during virus multiplication and mediate the release of progeny virions. Bacteriophages of the pathogen Listeria monocytogenes encode endolysin enzymes which specifically hydrolyse the cross-linking peptide bridges in Listeria peptidoglycan. Ply118 is a 30.8kDa L-alanoyl-D-glutamate peptidase and Ply511 (36.5 kDa) acts as N-acetylmuramoyl-L-alanine amidase (IPR002502 from INTERPRO). ; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4F78_A 2VO9_C.
Probab=21.45 E-value=1.3e+02 Score=19.71 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=15.8
Q ss_pred eeCHHHHHHHHHHHHhcCCCCccEEE
Q psy9411 12 TLTEVAIKKVSHLIKKKGNLNLKLRV 37 (118)
Q Consensus 12 ~IT~~A~~~l~~~~~~~~~~~~~lRi 37 (118)
.+.+.|++.+.+|+......+..|+|
T Consensus 3 ~l~~~~~~~~~~l~~aa~~~G~~l~i 28 (132)
T PF02557_consen 3 QLRPEAAKALNALVAAAKAEGINLKI 28 (132)
T ss_dssp CCEHHHHHHHHHHHHHCCTTTTSEEE
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 45677777777777665543444443
No 78
>smart00355 ZnF_C2H2 zinc finger.
Probab=21.23 E-value=45 Score=14.39 Aligned_cols=9 Identities=44% Similarity=1.320 Sum_probs=6.1
Q ss_pred CC-CCCCCCc
Q psy9411 108 CG-CGSSFST 116 (118)
Q Consensus 108 Cg-CG~sf~~ 116 (118)
|. |+.+|..
T Consensus 3 C~~C~~~f~~ 12 (26)
T smart00355 3 CPECGKVFKS 12 (26)
T ss_pred CCCCcchhCC
Confidence 53 8888863
No 79
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=21.20 E-value=1.7e+02 Score=17.38 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=17.4
Q ss_pred CCCCcceeeCHHHH------HHHHHHHHhcC
Q psy9411 5 VKNNISITLTEVAI------KKVSHLIKKKG 29 (118)
Q Consensus 5 ~~~~~~I~IT~~A~------~~l~~~~~~~~ 29 (118)
|..+..+||.++|+ ++|++++.+..
T Consensus 8 iweK~~LTi~EAa~Y~gIG~~klr~l~~~~~ 38 (67)
T PF09035_consen 8 IWEKYTLTIEEAAEYFGIGEKKLRELAEENP 38 (67)
T ss_dssp TTTSSEEEHHHHHHHT-S-HHHHHHHHHH-T
T ss_pred hhHhhccCHHHHHHHhCccHHHHHHHHHhCC
Confidence 44568888877774 68888885443
No 80
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.98 E-value=88 Score=15.83 Aligned_cols=17 Identities=24% Similarity=0.718 Sum_probs=9.5
Q ss_pred eEEEecCCCCCCCC-CCC
Q psy9411 96 KFVIKNPNAVTTCG-CGS 112 (118)
Q Consensus 96 gF~i~~p~~~~~Cg-CG~ 112 (118)
|++.........|. ||.
T Consensus 9 G~i~~g~~~p~~CP~Cg~ 26 (34)
T cd00729 9 GYIHEGEEAPEKCPICGA 26 (34)
T ss_pred CCEeECCcCCCcCcCCCC
Confidence 45555444455775 776
No 81
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=20.91 E-value=53 Score=20.56 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCCCCeEEEeCCEEEEEcccchhhccC-----cEEEEEeCC
Q psy9411 57 TNKDDIIFKKNGIQLLIDSVSYQYLIG-----SEIDYKDDL 92 (118)
Q Consensus 57 ~~~~D~v~~~~gi~v~id~~~~~~l~g-----~~IDy~~~~ 92 (118)
.+++|.+..+||.+|--+..-..+|.+ +.|.+....
T Consensus 40 v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 40 VREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp --TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-ST
T ss_pred CCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEEecCC
Confidence 458999999999999999888888876 555555443
No 82
>PF05171 HemS: Haemin-degrading HemS.ChuX domain; InterPro: IPR007845 The Yersinia enterocolitica O:8 periplasmic binding protein-dependent transport system consisted of four proteins: the periplasmic haemin-binding protein HemT, the haemin permease protein HemU, the ATP-binding hydrophilic protein HemV and the haemin-degrading protein HemS. The structure for HemS has been solved and consists of a tandem repeat of the domain represented in this entry[].; GO: 0006826 iron ion transport; PDB: 2HQ2_A 2J0R_A 2J0P_A 1U9T_A.
Probab=20.74 E-value=2.6e+02 Score=18.31 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=44.3
Q ss_pred ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeE-EEeCCEEEEEcccchhhc-------
Q psy9411 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDII-FKKNGIQLLIDSVSYQYL------- 81 (118)
Q Consensus 10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v-~~~~gi~v~id~~~~~~l------- 81 (118)
-..|. .+...|.+.+.+.+ ..|++++.+.||-.-.-|. +..-...+... +-.+++.+.++.......
T Consensus 16 a~rl~-~~~~~lL~~l~~~g---~~vm~~vrN~g~vq~~~G~-~~~~~~~g~~~~vl~~~~~L~l~~~~~~~~w~v~~~~ 90 (129)
T PF05171_consen 16 ARRLD-ADFPALLEALAELG---LPVMAFVRNPGAVQEHTGP-YENLRRMGPWLNVLDPGFDLRLFFSHWASAWAVREPT 90 (129)
T ss_dssp EEEE--THHHHHHHHHHHHT----SEEEEEEESSEEEEEEE----SEEECTTEEEEE-TTEEEEEEGGGEEEEEEEEEEE
T ss_pred EEEhh-HhHHHHHHHHHHcC---CcEEEEECCCceeEEEecc-ccCeeccCCEEEEECCCceEEEehhheeEEEEEEecC
Confidence 34555 55566666666654 5799999999996432221 22211123333 334568888887765432
Q ss_pred -cC--cEEEEEeCCCCceEEEe
Q psy9411 82 -IG--SEIDYKDDLDGSKFVIK 100 (118)
Q Consensus 82 -~g--~~IDy~~~~~~~gF~i~ 100 (118)
+| ..|.+.+.....=++|.
T Consensus 91 ~~g~~~Slq~fD~~G~~i~ki~ 112 (129)
T PF05171_consen 91 RDGVRTSLQFFDAQGEAIHKIF 112 (129)
T ss_dssp TTSEEEEEEEEETTS-EEEEEE
T ss_pred CCCcEEEEEEECCCCCEEEEEE
Confidence 12 45666555443334443
No 83
>KOG0064|consensus
Probab=20.60 E-value=1.2e+02 Score=25.96 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=27.1
Q ss_pred EEeCCEEEEEcccchhhccCcEEEEEeCCCCceEEEecCCCCCCCCCCCC
Q psy9411 64 FKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSS 113 (118)
Q Consensus 64 ~~~~gi~v~id~~~~~~l~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~s 113 (118)
+..+.++++.+.... ....++++-.+ |...-|..|| |||+|
T Consensus 482 I~lenIpvItP~~~v-vv~~Ltf~i~~---G~hLLItGPN-----GCGKS 522 (728)
T KOG0064|consen 482 IILENIPVITPAGDV-LVPKLTFQIEP---GMHLLITGPN-----GCGKS 522 (728)
T ss_pred eEEecCceeccCcce-eecceeEEecC---CceEEEECCC-----CccHH
Confidence 345567776665543 56667776643 5688899999 57766
No 84
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=20.49 E-value=1.4e+02 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.6
Q ss_pred CCCCCeEEEeCCEEEEEccc
Q psy9411 57 TNKDDIIFKKNGIQLLIDSV 76 (118)
Q Consensus 57 ~~~~D~v~~~~gi~v~id~~ 76 (118)
|.++|.|+--.|..|++|..
T Consensus 9 P~~g~~V~I~~g~~v~lD~~ 28 (125)
T PF10162_consen 9 PGAGDNVVIPAGQTVLLDVS 28 (125)
T ss_pred CCCCCEEEECCCCEEEEcCC
Confidence 66788888888888888887
No 85
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=20.19 E-value=45 Score=27.59 Aligned_cols=9 Identities=56% Similarity=1.505 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q psy9411 106 TTCGCGSSF 114 (118)
Q Consensus 106 ~~CgCG~sf 114 (118)
..||||+++
T Consensus 355 ~~CGCg~~m 363 (498)
T PF12141_consen 355 KNCGCGKSM 363 (498)
T ss_pred cCCCCCCee
Confidence 468887775
No 86
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=1.9e+02 Score=20.19 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=36.7
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCC-------CC-eEEEEEEccCCCCCCeEEEeC
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGC-------SG-FQYGFMFDEHTNKDDIIFKKN 67 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC-------~G-~~~~l~~~~~~~~~D~v~~~~ 67 (118)
--+++|...+..|.+.+... .+|+.|...-- +- .+|-+..+++..++|+++..|
T Consensus 60 G~~tL~~~Ga~~L~~~l~~P-----~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVVn 121 (155)
T COG1370 60 GLFTLTIEGARRLHRALPFP-----RMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVVN 121 (155)
T ss_pred ceEEechhhhHHHHhcCCCC-----ceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEEC
Confidence 45899999999999877543 47888754321 11 256677777788888776543
No 87
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=20.07 E-value=1.8e+02 Score=22.42 Aligned_cols=37 Identities=24% Similarity=0.491 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEE
Q psy9411 19 KKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFK 65 (118)
Q Consensus 19 ~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~ 65 (118)
++|++.+.... ...++|.+... ||+||+ |.+.|.|+.
T Consensus 149 ~~i~~~f~~~~--~~~~~v~v~SF---GFKyGi-----P~DADlVFD 185 (286)
T COG1660 149 ERIRTRFLGKE--ERTLTVTVESF---GFKYGI-----PIDADLVFD 185 (286)
T ss_pred HHHHHHHccCC--CcceEEEEEec---ccccCC-----CCCcceEEE
Confidence 34444444433 46789999876 566665 456677764
No 88
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=20.05 E-value=1.4e+02 Score=17.26 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=19.1
Q ss_pred cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeC
Q psy9411 9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQG 41 (118)
Q Consensus 9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~ 41 (118)
..+.+++.+.+.+.+.+...+ ..-|+....
T Consensus 22 ~~~~~s~~~ve~mL~~l~~kG---~I~~~~~~~ 51 (69)
T PF09012_consen 22 REFGISPEAVEAMLEQLIRKG---YIRKVDMSS 51 (69)
T ss_dssp HHTT--HHHHHHHHHHHHCCT---SCEEEEEE-
T ss_pred HHHCcCHHHHHHHHHHHHHCC---cEEEecCCC
Confidence 356789999999999998875 333444443
Done!