RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9412
(118 letters)
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein
structure initiative, NESG, reduced dimensionality PSI;
NMR {Aquifex aeolicus} SCOP: b.124.1.1
Length = 124
Score = 182 bits (463), Expect = 4e-61
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 1 MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
M E + I +T+ A++++ + ++ N LR+ + GGCSGFQY FD+ +
Sbjct: 1 MQEQAQQFI-FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEG 59
Query: 61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
D +F+ +G++++ID S Y+ G+E+DY D G F I+NPNA +CGCGSSFS
Sbjct: 60 DHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics,
structure 2 function project, S2F, unknown function; NMR
{Haemophilus influenzae}
Length = 114
Score = 179 bits (457), Expect = 2e-60
Identities = 62/115 (53%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 1 MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
M +++ + +T T+ A KV LI ++ N +LKLRV+I GGGCSGFQYGF FDE N
Sbjct: 1 MIDDM--AVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDG 58
Query: 61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
D+ +K+G+QL+ID +S QYLIG +DY + L+GS+F + NPNA +TCGCGSSFS
Sbjct: 59 DLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S
cluster, iron, iron-sulfur cluster protein, scaffold,
sulfur; 2.50A {Thermosynechococcus elongatus}
Length = 112
Score = 158 bits (403), Expect = 3e-52
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 11 ITLTEVAIKKVSHLIKKKG--NLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
+ LT AI+++ L LR+ +Q C ++Y D++ + G
Sbjct: 2 VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61
Query: 69 IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
+ I + + + L G +DY +DL G F NPNA TCGCG +F
Sbjct: 62 WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal
transport; 2.70A {Escherichia coli}
Length = 145
Score = 140 bits (355), Expect = 2e-44
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
+TLT A + L+ K+ + +R+ ++ GC+GF Y +KDD++F+ +G +
Sbjct: 41 LTLTPAAAIHIRELVAKQPG-MVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAK 99
Query: 71 LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
L + + ++ G+E+D+ + F NP A CGCG SF
Sbjct: 100 LFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFG 144
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein,
pseudo-symmetric motifs, metal transport; 2.30A
{Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Length = 118
Score = 137 bits (347), Expect = 1e-43
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
SITL++ A +V+ + +G LR+ ++ GCSG Y F + +DI+F+ G+
Sbjct: 2 SITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV 60
Query: 70 QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
++++D S Q+L G+++D+ + F NPN CGCG SF
Sbjct: 61 KVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Allochromatium vinosum}
Length = 125
Score = 130 bits (330), Expect = 6e-41
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
LT A ++V K+ G + LR+ Y FD+ +DDI G++
Sbjct: 23 FKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDD-LTEDDIRLTSEGVE 81
Query: 71 LLIDSVSYQYLIGSEIDYKDDLDGSK-FVIKNPNA 104
++I L + +DY + G F+ NP
Sbjct: 82 IVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRD 116
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 27.1 bits (60), Expect = 1.3
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 9 ISITLTEVAIKKVS-HLIKKKGNLNLKLRVFIQGGGCSGFQYG 50
+ +++ + + L G R+ I C
Sbjct: 128 VFCSISGIDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAM 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 3.8
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 2 NENVKNN-ISITLTEVAIKKVSHLIK--KKGNLNL-KLRV 37
N NV+N A+ V++++ K +++ +L+
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural
genomics, JOI for structural genomics, JCSG; 2.26A
{Shewanella baltica OS155}
Length = 243
Score = 25.7 bits (56), Expect = 4.2
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 14/109 (12%)
Query: 1 MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQY-----GFMFDE 55
M K N + + + I + + + + G F
Sbjct: 55 MATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGY 114
Query: 56 HTNKDDIIFKKNGIQLLID-SVSYQYLIGSEIDYKDDLDGSKFVIKNPN 103
H D+ I + D S + + ++ G + VI++
Sbjct: 115 HI--DNAIRSTPDGMIRTDLSATLF------LSEPENYQGGELVIQDTY 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.398
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,769,393
Number of extensions: 97928
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 13
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)