RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9412
(118 letters)
>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
aeolicus [TaxId: 63363]}
Length = 101
Score = 95.2 bits (236), Expect = 2e-27
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 1 MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
M E + I +T+ A++++ + ++ N LR+ + GGCSGFQY FD+ +
Sbjct: 1 MQEQAQQFI-FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEG 59
Query: 61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNP 102
D +F+ +G++++ID S Y+ G+E+DY D G F I+NP
Sbjct: 60 DHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101
>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 92.7 bits (230), Expect = 1e-26
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
SITL++ A +V+ + +G LR+ ++ GCSG Y F + +DI+F+ G+
Sbjct: 1 SITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV 59
Query: 70 QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNA 104
++++D S Q+L G+++D+ + F NPN
Sbjct: 60 KVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNV 94
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 261
Score = 25.7 bits (56), Expect = 1.4
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 26 KKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIF 64
KK+ ++ V++ C+G + D++I
Sbjct: 1 KKRPSV-----VYLHNAECTGCSESVLRTVDPYVDELIL 34
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 267
Score = 24.9 bits (54), Expect = 2.9
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 37 VFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
V++ C+G + D +I + + L
Sbjct: 10 VYLHNAECTGCSESVLRAFEPYIDTLIL--DTLSLD 43
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 25.0 bits (54), Expect = 3.0
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 37 VFIQGGGCSGFQYGFMFDEHTNKDDIIF 64
+++QG GC+G + H +I+
Sbjct: 6 IWVQGQGCTGCSVSLLNAVHPRIKEILL 33
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 24.8 bits (53), Expect = 3.6
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 37 VFIQGG-GCSGFQYGFMFDEH----TNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDD 91
+++ GG GCS G M E + + N Y + + I + +
Sbjct: 55 LWLNGGPGCSSIGLGAMQ-ELGAFRVHTNGESLLLN---------EYAWNKAANILFAES 104
Query: 92 LDGSKFVIKNPNAVTTCG 109
G F N ++ + G
Sbjct: 105 PAGVGFSYSNTSSDLSMG 122
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 24.2 bits (52), Expect = 3.8
Identities = 5/55 (9%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 18 IKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
+++ ++K+ + + ++ + + IF +LL
Sbjct: 29 CSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAI-AKELL 82
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 261
Score = 24.5 bits (53), Expect = 4.0
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 26 KKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIF 64
K + ++ V++ C+G + D +I
Sbjct: 1 KHRPSV-----VWLHNAECTGCTEAAIRTIKPYIDALIL 34
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 117
Score = 23.9 bits (51), Expect = 4.2
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 18 IKKVSHLIKKKGNLNLKL--RVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLID 74
+K + + I N+K ++ I G G + + I + N I D
Sbjct: 4 VKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFD 62
>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
562]}
Length = 720
Score = 24.5 bits (53), Expect = 4.2
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 19 KKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLI 73
+ V L ++L+ + + Q+ + I+ K NG+ + +
Sbjct: 184 QDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIEL 238
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 24.0 bits (51), Expect = 7.1
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 80 YLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
+ ++D + + ++ + CG+S+
Sbjct: 28 RISHGQVDLSELGPNADELLSKVEHIQILACGTSY 62
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 300
Score = 23.3 bits (49), Expect = 8.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 85 EIDYKDDLDGSKFVIKNPNAVTTCGCGSS 113
+ ++G I+ + G G S
Sbjct: 19 DFPTSYVVEGEVVRIEAMPRLYISGMGGS 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.398
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,005
Number of extensions: 20368
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 19
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)