BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9414
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
pdb|1O0C|A Chain A, Crystal Structure Of L-glutamate And Ampcpp Bound To
Glutamine Aminoacyl Trna Synthetase
Length = 554
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 161 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 220
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 221 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 275
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 276 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 335
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 336 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 390
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 391 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 445 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 501
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 502 GFAEPSLKDAVAGKAFQFER 521
>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed
With Trnagln And Atp At 2.8 Angstroms Resolution
pdb|1GTR|A Chain A, Structural Basis Of Anticodon Loop Recognition By
Glutaminyl-Trna Synthetase
pdb|1GTS|A Chain A, Structural Basis For Transfer Rna Aminoaceylation By
Escherichia Coli Glutaminyl-Trna Synthetase
pdb|1QTQ|A Chain A, Glutaminyl-Trna Synthetase Complexed With Trna And An
Amino Acid Analog
pdb|1ZJW|A Chain A, Glutaminyl-trna Synthetase Complexed To Glutamine And
2'deoxy A76 Glutamine Trna
Length = 553
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 219
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 220 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 274
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 275 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 335 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 389
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 390 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 444 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 500
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 501 GFAEPSLKDAVAGKAFQFER 520
>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With
Glutamine Transfer Rna
Length = 553
Score = 327 bits (837), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 219
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 220 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 274
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 275 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 335 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 389
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 390 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 444 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 500
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 501 GFAEPSLKDAVAGKAFQFER 520
>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed
With A Trna- Gln Mutant And An Active-Site Inhibitor
pdb|1EUY|A Chain A, Glutaminyl-Trna Synthetase Complexed With A Trna Mutant
And An Active Site Inhibitor
pdb|1EXD|A Chain A, Crystal Structure Of A Tight-Binding Glutamine Trna Bound
To Glutamine Aminoacyl Trna Synthetase
Length = 548
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 161 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 220
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 221 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 275
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 276 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 335
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 336 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 390
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 391 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 445 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 501
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 502 GFAEPSLKDAVAGKAFQFER 521
>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase
Length = 539
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 153 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 212
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 213 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 267
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 268 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 327
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 328 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 382
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 383 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 436
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 437 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 493
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 494 GFAEPSLKDAVAGKAFQFER 513
>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With
Glutamine Transfer Rna
Length = 553
Score = 324 bits (831), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 230/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 219
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQ++R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 220 ALEGITHSLCTLEFQNNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 274
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 275 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 335 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 389
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 390 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 444 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 500
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 501 GFAEPSLKDAVAGKAFQFER 520
>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With
Glutamine Transfer Rna
Length = 553
Score = 324 bits (830), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 229/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 219
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+CTLEFQ +R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 220 ALEGITHSLCTLEFQGNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 274
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 275 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 335 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 389
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 390 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 444 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 500
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 501 GFAEPSLKDAVAGKAFQFER 520
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 322 bits (824), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/380 (45%), Positives = 229/380 (60%), Gaps = 20/380 (5%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 161 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 220
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
A+E ITHS+ TLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ S
Sbjct: 221 ALEGITHSLRTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 275
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 276 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 335
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKE-KLRYFPISKILWIER 239
L+ APR MAV++P+KL+I N+ E+ T P H E R P S +WI+R
Sbjct: 336 LNENAPRAMAVIDPVKLVIENYQGEGEM-VTMP----NHPNKPEMGSRQVPFSGEIWIDR 390
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 391 ADFREEANKQYKRLV------LGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
+ KVKG IHW+S +HAL +E RLYDRLF P P + DF +INP S +
Sbjct: 445 KDP-ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAAD--DFLSVINPESLVIKQ 501
Query: 360 AYLEPNLKLIFPKKHAQFEQ 379
+ EP+LK K QFE+
Sbjct: 502 GFAEPSLKDAVAGKAFQFER 521
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/421 (36%), Positives = 227/421 (53%), Gaps = 62/421 (14%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
M++GEF DG HVLR KI++ + N+ +RDP++YRI + H+RT++ W IYP YD+ HP+ D
Sbjct: 200 MKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQD 259
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSXXXXX 120
AIE +THS+C+LEF D+R Y+W++ K+ NF P P QYEF R L +TITS
Sbjct: 260 AIEGVTHSMCSLEFVDNRAIYDWLMEKL---NF--DPRPHQYEFGRRGLEYTITSKRKLR 314
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
V GWDDPRMPTL RR G TPE+++ F +IGVS+++ ++I + E A+RDD
Sbjct: 315 ELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDD 374
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEI---------------ECTAPLFSRQHTQYKEK 225
L+ +APR+MAVL+P+K+ ++N LD ++ + + +E
Sbjct: 375 LNHRAPRVMAVLDPVKVTLTN-LDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEA 433
Query: 226 LRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNE 285
+R P+++ L+IERDDF P K + RL P G VRLR ++ F ++ +
Sbjct: 434 VRDVPLTRELYIERDDFSPAPPKGFKRLTP------GGTVRLRGAGIIRADDFGTDEAGQ 487
Query: 286 VVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVN--- 342
V + T L + K G IHW+S AL E RLYDRLF P+P N
Sbjct: 488 VTHIRA---------TLLGEDAKAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADV 538
Query: 343 -----------------------NKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQ 379
++ F + P+S +V+ Y+EP++ QFE+
Sbjct: 539 EDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFER 598
Query: 380 N 380
Sbjct: 599 Q 599
>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
Length = 553
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 14/202 (6%)
Query: 5 EFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIEN 64
E K+G+ V+RVK ++ N +RD + RI H RT + +YPM +++ + D +
Sbjct: 227 EMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLG 286
Query: 65 ITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPF----PKQYEFSRLNLTHTITSXXXXX 120
+TH L +DH L +K ++ R P+ + RL + S
Sbjct: 287 VTH---VLRGKDH-------LANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAR 336
Query: 121 XXXXXXIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
GWDDPR+ TL + RRG PE+I+ IGV +DS ++ + + R
Sbjct: 337 EGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSI 396
Query: 181 LDIKAPRIMAVLNPIKLIISNF 202
L+ +A R +P+KL +
Sbjct: 397 LEEEARRYFFAADPVKLEVVGL 418
>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
Desulfovibrio Desulfuricans
Length = 421
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCI 499
I E KCIGC C Q CP AI G H+I + C C C+ CP N I
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 81
>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
Complex Combining Nmr And Soft-Docking
pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
Cytochrome C3 And [fe]-Hydrogenase
Length = 371
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCI 499
I E KCIGC C Q CP AI G H+I + C C C+ CP N I
Sbjct: 4 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 55
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 447 AIIKENKC----IGCTLCIQSCPVDAIIGAA------KHMHTIFSKLCTGCDLCIKKCPV 496
A+I +KC G LC + CPV+ + G A + I CTGC +C+ KCP
Sbjct: 22 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81
Query: 497 NCISMI 502
N IS++
Sbjct: 82 NAISIV 87
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 447 AIIKENKC----IGCTLCIQSCPVDAIIGAA------KHMHTIFSKLCTGCDLCIKKCPV 496
A+I +KC G LC + CPV+ + G A + I CTGC +C+ KCP
Sbjct: 8 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 67
Query: 497 NCISMI 502
N IS++
Sbjct: 68 NAISIV 73
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 447 AIIKENKCIGCTLCIQSC---PVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCP-VNCISM 501
A+I E CI C C +C AI H+ T+ + CTGC LC+ CP ++CI M
Sbjct: 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIIDCIRM 1004
Query: 502 IEVT 505
+ T
Sbjct: 1005 VSRT 1008
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 447 AIIKENKCIGCTLCIQSC---PVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCP-VNCISM 501
A+I E CI C C +C AI H+ T+ + CTGC LC+ CP ++CI M
Sbjct: 946 AVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-TDTCTGCTLCLSVCPIIDCIRM 1004
Query: 502 IEVT 505
+ T
Sbjct: 1005 VSRT 1008
>pdb|1K0T|A Chain A, Nmr Solution Structure Of Unbound, Oxidized Photosystem I
Subunit Psac, Containing [4fe-4s] Clusters Fa And Fb
Length = 80
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 452 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ CIGCT C+++CP+D + A + + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 64
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 520
C GC C++ CP++ + M+ C+ G A S + D
Sbjct: 10 CIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTED 46
>pdb|1JB0|C Chain C, Crystal Structure Of Photosystem I: A Photosynthetic
Reaction Center And Core Antenna System From
Cyanobacteria
pdb|3PCQ|C Chain C, Femtosecond X-Ray Protein Nanocrystallography
pdb|4FE1|C Chain C, Improving The Accuracy Of Macromolecular Structure
Refinement At 7 A Resolution
Length = 80
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 452 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ CIGCT C+++CP D + A + + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSI 64
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 520
C GC C++ CP + + M+ C+ G A S + D
Sbjct: 10 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTED 46
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 440 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
E R C ++K K LCI+ P I I LC GC +C+KKCP + I
Sbjct: 23 QECKRSCPVVKTGK-----LCIEVTPTSKI-------AFISEILCIGCGICVKKCPFDAI 70
Query: 500 SMIEV 504
+I +
Sbjct: 71 QIINL 75
>pdb|1BLU|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Chromatium
Vinosum
Length = 82
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 499
A++ ++CI C +C CP + I + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDVCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCI 58
>pdb|2WSC|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSE|C Chain C, Improved Model Of Plant Photosystem I
pdb|2WSF|C Chain C, Improved Model Of Plant Photosystem I
pdb|3LW5|C Chain C, Improved Model Of Plant Photosystem I
Length = 81
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 452 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ CIGCT C+++CP D + A + ++ C GC C CP + +S+
Sbjct: 9 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSV 65
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 520
C GC C++ CP + + MI C+ A + + D
Sbjct: 11 CIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTED 47
>pdb|2O01|C Chain C, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 80
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 452 NKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ CIGCT C+++CP D + A + ++ C GC C CP + +S+
Sbjct: 8 DTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLSV 64
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 520
C GC C++ CP + + MI C+ A + + D
Sbjct: 10 CIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTED 46
>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
Schlegelii Fe7s8 Ferredoxin
Length = 77
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 447 AIIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504
A + CIG C C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKCASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 505 TPCRTGWDAWSQKKAD 520
P W ++ QK D
Sbjct: 60 VP--EEWKSYIQKNRD 73
>pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
Model At 1.8 Angstroms Resolution
Length = 55
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 497
A + CI C C CPVDAI + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVDAISQGGSR-YVIDADTCIDCGACAGVCPVD 50
>pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g Variant
From Allochromatium Vinosum
Length = 82
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 499
A++ ++CI C C CP + I + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDGCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCI 58
>pdb|4DJD|C Chain C, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJD|E Chain E, Crystal Structure Of Folate-Free Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr)
pdb|4DJE|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJE|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate
pdb|4DJF|C Chain C, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
pdb|4DJF|E Chain E, Crystal Structure Of Folate-Bound Corrinoid Iron-Sulfur
Protein (Cfesp) In Complex With Its Methyltransferase
(Metr), Co-Crystallized With Folate And Ti(Iii) Citrate
Reductant
Length = 446
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 382 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCP 413
LP+ C +CG P C +A +A+ KA+ + CP
Sbjct: 12 LPKKNCGECGTPTCLAFAMNLASGKASLDSCP 43
>pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
Mycobacterium Smegmatis
Length = 105
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 460 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKA 519
CI+ CPVD I A+ ++ I C C CPV I + P + W +++Q A
Sbjct: 16 CIEECPVDCIYEGARMLY-IHPDECVDXGACEPVCPVEAIYYEDDVPDQ--WSSYAQANA 72
Query: 520 D 520
D
Sbjct: 73 D 73
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 382 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCP 413
LP+ C +CG P C +A IA KA + CP
Sbjct: 12 LPKKNCKECGQPTCLAFAMQIAAGKAGLDACP 43
>pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
Azotobacter Vinelandii Ferredoxin
Length = 106
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVDA + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Clostridium Acidurici At 1.84 Angstroms Resolution
pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
Length = 55
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 497
A + CI C C CPV+A I + + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNA-ISSGDDRYVIDADTCIDCGACAGVCPVD 50
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 429 KPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGA 472
+P P+N I + +I + CI C C CPVDA + A
Sbjct: 15 EPECPVNAISSGDDRY---VIDADTCIDCGACAGVCPVDAPVQA 55
>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
Ferredoxins: High Resolution Crystal Structure Of The
Seven-Iron Ferredoxin From Thermus Thermophilus
Length = 78
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 454 CIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW 511
CIG C++ CPV+ I + I + C C C+ CPVN I E P + W
Sbjct: 8 CIGVKDQSCVEVCPVECIYDGGDQFY-IHPEECIDCGACVPACPVNAIYPEEDVPEQ--W 64
Query: 512 DAWSQK 517
++ +K
Sbjct: 65 KSYIEK 70
>pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD I + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|8 Chain 8, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 182
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 453 KCIGCTLCIQSCPVDAI------------IGAAKHMHTIFS---KLCTGCDLCIKKCPVN 497
KCIGC+LC +CP AI + A + ++ C C LC + CP
Sbjct: 52 KCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTG 111
Query: 498 CISM 501
I +
Sbjct: 112 AIVL 115
>pdb|3EUN|A Chain A, Crystal Structure Of The 2[4fe-4s] C57a Ferredoxin Variant
From Allochromatium Vinosum
Length = 82
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCI 499
A++ ++CI C +C CP + I + I LCT C C++ CPV+ I
Sbjct: 1 ALMITDECINCDVCEPECP-NGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAI 58
>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
Structures
Length = 77
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504
A + CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKDASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 505 TPCRTGWDAWSQKKAD 520
P W ++ QK D
Sbjct: 60 VP--EEWKSYIQKNRD 73
>pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCAPECPAQAI 54
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 448 IIKENKCIGCT--LCIQSCP-VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 497
+I+++ C+ C C+++CP AII A + S+ C GC CI CP N
Sbjct: 94 LIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFN 146
>pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
Length = 55
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 452 NKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496
+ C+ C C CPV+A I + I + C C C CPV
Sbjct: 6 DSCVSCGACASECPVNA-ISQGDSIFVIDADTCIDCGNCANVCPV 49
>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
Average Structure
Length = 77
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 454 CIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW 511
CIG C++ CPVD I + + I +C C C CPV+ I + P W
Sbjct: 8 CIGTKDASCVEVCPVDC-IHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP--EEW 64
Query: 512 DAWSQKKAD 520
++ QK D
Sbjct: 65 KSYIQKNRD 73
>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
Length = 106
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
Length = 106
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
Length = 106
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCESECPAQAI 54
>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
Azotobacter Vinelandii At 1.7 Angstrom Resolution
Length = 106
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECNDCALCEPECPAQAI 54
>pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDSCIDCALCEPECPAQAI 54
>pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
Facilitates Proton Transfer To The Reduced [3fe-4s]
Cluster
Length = 106
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
And Docking Simulation
Length = 59
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 448 IIKENKCIGCTLCIQSCP-VDAII-GAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500
+I +CIGC C++ CP V A+I G K M T I CPV IS
Sbjct: 3 VIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57
>pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
Vinelandii At 2.3 Angstroms Resolution
pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
Vinelandii Ferredoxin At Ph 8 And Ph 6
pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
Temperature, 1.35 A
pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
K, 1.35 A
pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
Reduced, Ph 8.5, 1.4a Resolution, 100 K
pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
Dithionite Reduced At Ph 8.5, Resolution 1.4 A
Length = 106
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AYVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIDPDECIDCALCEPECPAQAI 54
>pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
Length = 106
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGCTLC--IQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C C ++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
Peptostreptococcus Asaccharolyticus
Length = 55
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496
A + + CI C C CPV+ I + ++ I + C C C CPV
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQEGS--IYAIDADSCIDCGSCASVCPV 48
>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
Azotobacter Vinelandii At 1.75 Angstrom Resolution
Length = 106
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPVD + I C C LC +CP I
Sbjct: 1 AHVVTDNCIKCKYTDCVEVCPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
Individual Surface Charges And The [4fe-4s] Cluster
Reduction Potential
Length = 106
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ CPV+ + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 17/79 (21%)
Query: 430 PIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGC- 487
P+ P Y + ++ KCI C CI +CP D A+++H + CT C
Sbjct: 68 PVCPTGASYQTKDGL--VLVDPKKCIACGACIAACPYD-----ARYLHPAGYVSKCTFCA 120
Query: 488 --------DLCIKKCPVNC 498
C++ CP C
Sbjct: 121 HRLEKGKVPACVETCPTYC 139
>pdb|2ZVS|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|B Chain B, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
pdb|2ZVS|C Chain C, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
Escherichia Coli
Length = 85
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPV 496
A++ KCI C +C CP +A I H++ I S CT C C K CP+
Sbjct: 1 ALLITKKCINCDMCEPECPNEA-ISMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55
>pdb|2FGO|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Pseudomonas
Aeruginosa
Length = 82
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 452 NKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGC------DLCIKKCPVNCISM 501
+ CI C +C CP + I + ++ I LCT C C + CPV+CI +
Sbjct: 6 DDCINCDVCEPECP-NGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPL 60
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 418 KGIIKLAKYLNKPIIPLN-TIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHM 476
K +IK +KP +P + T Y +E+S+ + + KC+ C C+ +C + A K +
Sbjct: 111 KLVIKYKARASKPFLPKDKTEYVDERSKSLTVDR-TKCLLCGRCVNACGKNTETYAMKFL 169
Query: 477 H----TIFSKL---------CTGCDLCIKKCPVNCIS 500
+ TI C C CI CPV +S
Sbjct: 170 NKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALS 206
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 425 KYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKL 483
K+LNK TI G E +C + C+ C CI +CPV A + HM + + L
Sbjct: 167 KFLNKN---GKTIIGAEDEKC---FDDTNCLLCGQCIIACPV-AALSEKSHMDRVKNAL 218
>pdb|3GYX|B Chain B, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|D Chain D, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|F Chain F, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|H Chain H, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|J Chain J, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|L Chain L, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 166
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 449 IKENKCIGC-----TLCIQSCPVDAIIGAAKHMHTIFSK--LCTGCDLCIKKCPVNCIS 500
+ +KC GC T C+ CP D +I + M + C C CIK CP I+
Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAIT 62
>pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
Ferredoxin I. (Fe-S) Cluster-Driven Protein
Rearrangement
Length = 106
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ PVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
Length = 106
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + + CI C T C++ PVD + I C C LC +CP I
Sbjct: 1 AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFL-VIHPDECIDCALCEPECPAQAI 54
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 39 HYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80
+YR +W Y Y YA ISD I+ I +I EF +PF
Sbjct: 528 YYRGCPSWSWYYRYHYAPRISDVIKGIDQNI---EFHKGQPF 566
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 167 WINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECT--APLFSRQHTQYK- 223
W N + +E + + P + N + L+ + + ++ PL + Y
Sbjct: 296 WPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTF 355
Query: 224 -EKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKN 281
+ YF + +++D +++ K Y P+ N R+R G +V TGF N
Sbjct: 356 MPNMSYFEFIPMDGGDKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNN 414
>pdb|2VKR|A Chain A, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|B Chain B, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|C Chain C, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|D Chain D, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|E Chain E, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|F Chain F, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
pdb|2VKR|G Chain G, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
Length = 103
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 454 CIGCTLCIQSCPVDAII--------GAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
CI CI +CPV+ + K I + C C C+ CPV + I+V
Sbjct: 45 CIADGSCITACPVNVFQWYDTPGHPASEKKADPINEQACIFCMACVNVCPV---AAIDVK 101
Query: 506 P 506
P
Sbjct: 102 P 102
>pdb|1XER|A Chain A, Structure Of Ferredoxin
Length = 103
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 454 CIGCTLCIQSCPVDAII--------GAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
CI CI +CPV+ + K + + C C C+ CPV + I+V
Sbjct: 45 CIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV---AAIDVK 101
Query: 506 P 506
P
Sbjct: 102 P 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,364,034
Number of Sequences: 62578
Number of extensions: 732501
Number of successful extensions: 1685
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 132
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)