Query psy9414
Match_columns 582
No_of_seqs 542 out of 5129
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:34:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05347 glutaminyl-tRNA synth 100.0 3E-104 6E-109 854.6 36.8 363 1-381 163-526 (554)
2 PTZ00437 glutaminyl-tRNA synth 100.0 4E-101 9E-106 828.3 33.9 353 1-381 180-535 (574)
3 PRK14703 glutaminyl-tRNA synth 100.0 6E-100 1E-104 853.1 35.2 365 1-382 165-531 (771)
4 PLN02859 glutamine-tRNA ligase 100.0 4E-100 8E-105 844.7 31.7 358 1-381 393-758 (788)
5 KOG1148|consensus 100.0 1.2E-99 3E-104 793.3 18.2 356 1-381 378-736 (764)
6 TIGR00440 glnS glutaminyl-tRNA 100.0 1.6E-97 4E-102 801.4 33.1 361 1-381 134-496 (522)
7 PLN03233 putative glutamate-tR 100.0 2E-95 4E-100 784.0 31.2 341 1-381 140-485 (523)
8 PTZ00402 glutamyl-tRNA synthet 100.0 5E-94 1.1E-98 779.8 33.7 348 1-381 182-532 (601)
9 PLN02907 glutamate-tRNA ligase 100.0 1.4E-92 3E-97 796.6 33.8 347 1-381 342-692 (722)
10 KOG1147|consensus 100.0 3.8E-88 8.2E-93 701.0 19.8 346 1-380 329-678 (712)
11 PRK04156 gltX glutamyl-tRNA sy 100.0 5.1E-81 1.1E-85 680.2 32.0 315 1-381 232-548 (567)
12 TIGR00463 gltX_arch glutamyl-t 100.0 3.8E-79 8.2E-84 664.7 29.1 318 1-381 222-541 (560)
13 COG0008 GlnS Glutamyl- and glu 100.0 3.6E-46 7.9E-51 400.4 -1.0 310 8-381 148-467 (472)
14 cd00807 GlnRS_core catalytic c 100.0 5E-43 1.1E-47 344.3 13.2 144 38-187 95-238 (238)
15 cd09287 GluRS_non_core catalyt 100.0 6E-42 1.3E-46 338.0 12.9 143 39-187 98-240 (240)
16 PF03950 tRNA-synt_1c_C: tRNA 100.0 6.7E-38 1.4E-42 298.1 14.2 167 185-381 1-169 (174)
17 PRK12410 glutamylglutaminyl-tR 100.0 9.5E-34 2.1E-38 301.7 12.7 148 7-188 132-315 (433)
18 PRK12558 glutamyl-tRNA synthet 100.0 2.3E-32 5.1E-37 292.3 14.9 144 9-186 140-319 (445)
19 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.2E-34 2.6E-39 300.6 -4.6 174 1-181 134-312 (314)
20 PLN02627 glutamyl-tRNA synthet 100.0 8.2E-32 1.8E-36 291.4 14.5 137 15-185 212-372 (535)
21 KOG1149|consensus 100.0 6.4E-30 1.4E-34 262.1 12.5 142 8-183 179-358 (524)
22 PRK06991 ferredoxin; Provision 100.0 1.7E-29 3.6E-34 254.6 15.1 200 378-577 11-225 (270)
23 cd00418 GlxRS_core catalytic c 100.0 5.9E-29 1.3E-33 244.9 10.7 114 48-183 93-230 (230)
24 PRK14895 gltX glutamyl-tRNA sy 100.0 1.8E-28 3.9E-33 265.1 13.5 146 8-187 138-320 (513)
25 PRK01406 gltX glutamyl-tRNA sy 99.9 1.3E-27 2.8E-32 260.3 13.5 144 8-185 149-329 (476)
26 TIGR03838 queuosine_YadB gluta 99.9 9.5E-28 2.1E-32 242.4 8.1 129 6-163 125-259 (272)
27 TIGR00464 gltX_bact glutamyl-t 99.9 2.9E-27 6.4E-32 257.4 12.4 147 7-187 138-322 (470)
28 PRK05710 glutamyl-Q tRNA(Asp) 99.9 3.3E-27 7.3E-32 241.0 11.6 117 10-164 136-267 (299)
29 cd00808 GluRS_core catalytic c 99.9 8.6E-26 1.9E-30 224.1 9.7 113 48-182 102-238 (239)
30 COG2878 Predicted NADH:ubiquin 99.8 8.7E-22 1.9E-26 181.5 5.4 133 374-506 36-169 (198)
31 PRK08764 ferredoxin; Provision 99.8 5E-21 1.1E-25 175.1 8.8 129 373-501 6-134 (135)
32 PRK05113 electron transport co 99.8 1.3E-19 2.9E-24 174.9 9.2 135 370-505 32-167 (191)
33 TIGR01944 rnfB electron transp 99.8 9.1E-19 2E-23 165.7 8.7 128 375-503 35-164 (165)
34 PRK07118 ferredoxin; Validated 99.6 2E-15 4.4E-20 154.2 7.6 135 369-504 31-190 (280)
35 PRK08493 NADH dehydrogenase su 99.3 7.7E-13 1.7E-17 152.1 6.0 128 362-504 64-226 (819)
36 COG3383 Uncharacterized anaero 99.3 1.1E-12 2.4E-17 143.5 4.2 106 397-502 88-212 (978)
37 COG0437 HybA Fe-S-cluster-cont 99.3 1.2E-12 2.5E-17 126.1 3.7 84 385-505 67-159 (203)
38 PF13247 Fer4_11: 4Fe-4S diclu 99.3 4.6E-13 9.9E-18 115.2 0.5 82 385-503 7-97 (98)
39 PF14697 Fer4_21: 4Fe-4S diclu 99.3 1.4E-12 3.1E-17 101.7 2.8 54 448-501 2-59 (59)
40 COG1143 NuoI Formate hydrogenl 99.3 1.3E-12 2.7E-17 123.4 2.9 66 441-506 44-119 (172)
41 PTZ00305 NADH:ubiquinone oxido 99.3 3.7E-12 8E-17 128.0 5.2 129 362-505 134-276 (297)
42 PRK07569 bidirectional hydroge 99.3 7.2E-12 1.6E-16 125.4 6.9 108 397-504 88-212 (234)
43 TIGR01973 NuoG NADH-quinone ox 99.2 1.1E-11 2.4E-16 140.7 6.1 127 362-503 64-203 (603)
44 TIGR01660 narH nitrate reducta 99.2 5.2E-12 1.1E-16 133.3 3.0 123 341-503 138-271 (492)
45 PRK09130 NADH dehydrogenase su 99.2 1.5E-11 3.3E-16 140.7 5.9 128 361-503 66-206 (687)
46 PRK05035 electron transport co 99.2 1.2E-11 2.7E-16 140.2 4.2 124 449-577 367-502 (695)
47 PRK09129 NADH dehydrogenase su 99.2 2E-11 4.4E-16 142.4 5.6 127 362-503 66-205 (776)
48 PRK07860 NADH dehydrogenase su 99.1 3.3E-11 7.2E-16 140.5 5.8 107 397-503 91-211 (797)
49 PRK08166 NADH dehydrogenase su 99.1 5.3E-11 1.1E-15 140.1 6.9 107 397-503 91-210 (847)
50 TIGR03478 DMSO_red_II_bet DMSO 99.1 4.1E-11 9E-16 122.1 3.8 84 385-505 129-221 (321)
51 COG1034 NuoG NADH dehydrogenas 99.1 8.5E-11 1.9E-15 132.1 5.0 124 366-504 70-206 (693)
52 PF13187 Fer4_9: 4Fe-4S diclus 99.1 6.1E-11 1.3E-15 91.1 2.2 47 453-499 1-55 (55)
53 COG1148 HdrA Heterodisulfide r 99.0 1.4E-10 3.1E-15 122.5 5.0 134 352-504 464-609 (622)
54 TIGR03149 cyt_nit_nrfC cytochr 99.0 1.3E-10 2.7E-15 115.7 3.7 84 385-505 92-185 (225)
55 COG1144 Pyruvate:ferredoxin ox 99.0 9.9E-11 2.1E-15 96.6 2.3 59 446-504 29-88 (91)
56 PRK09898 hypothetical protein; 99.0 1.3E-10 2.9E-15 114.2 3.3 83 385-504 121-203 (208)
57 PRK14993 tetrathionate reducta 99.0 1.4E-10 3.1E-15 116.5 3.3 83 385-505 98-189 (244)
58 PRK10882 hydrogenase 2 protein 99.0 3.3E-10 7.2E-15 117.9 4.3 85 385-504 110-207 (328)
59 PRK08348 NADH-plastoquinone ox 99.0 3.5E-10 7.7E-15 101.5 3.7 64 441-504 31-95 (120)
60 COG1142 HycB Fe-S-cluster-cont 99.0 2.3E-10 4.9E-15 106.7 2.5 87 382-504 48-141 (165)
61 TIGR02936 fdxN_nitrog ferredox 99.0 2.3E-10 5E-15 97.4 1.8 58 445-502 14-90 (91)
62 TIGR01582 FDH-beta formate deh 98.9 5.5E-10 1.2E-14 114.1 4.6 83 385-505 91-183 (283)
63 PRK08222 hydrogenase 4 subunit 98.9 5.2E-10 1.1E-14 107.5 4.1 65 440-504 26-95 (181)
64 PRK09624 porD pyuvate ferredox 98.9 4.5E-10 9.7E-15 98.3 3.0 58 446-503 45-102 (105)
65 TIGR02179 PorD_KorD 2-oxoacid: 98.9 6.7E-10 1.5E-14 91.8 3.4 58 446-503 19-76 (78)
66 PRK09623 vorD 2-ketoisovalerat 98.9 7.6E-10 1.6E-14 96.9 3.2 60 445-504 44-103 (105)
67 TIGR00403 ndhI NADH-plastoquin 98.9 1.1E-09 2.5E-14 105.3 4.6 65 441-505 51-125 (183)
68 PRK09625 porD pyruvate flavodo 98.9 7.7E-10 1.7E-14 100.9 3.2 58 446-503 53-110 (133)
69 PRK10330 formate dehydrogenase 98.9 1.3E-09 2.7E-14 105.0 4.1 84 385-504 56-157 (181)
70 PRK09626 oorD 2-oxoglutarate-a 98.9 1.2E-09 2.7E-14 95.3 3.3 62 443-504 7-75 (103)
71 PRK12387 formate hydrogenlyase 98.9 1.5E-09 3.2E-14 104.4 3.9 64 441-504 27-95 (180)
72 KOG3256|consensus 98.9 8.7E-10 1.9E-14 100.4 2.1 61 446-506 105-174 (212)
73 COG1146 Ferredoxin [Energy pro 98.8 1.8E-09 3.9E-14 86.9 3.3 58 447-504 3-63 (68)
74 PF12838 Fer4_7: 4Fe-4S diclus 98.8 8.7E-10 1.9E-14 83.8 1.2 46 453-498 1-52 (52)
75 TIGR02951 DMSO_dmsB DMSO reduc 98.8 1.9E-09 4.1E-14 101.8 3.1 84 384-504 61-153 (161)
76 CHL00065 psaC photosystem I su 98.8 1.9E-09 4.1E-14 89.9 2.5 58 448-505 5-69 (81)
77 PRK05888 NADH dehydrogenase su 98.8 3.7E-09 7.9E-14 100.2 4.7 63 443-505 44-120 (164)
78 PLN00071 photosystem I subunit 98.8 2.7E-09 5.9E-14 88.9 2.9 58 447-504 4-68 (81)
79 PF13237 Fer4_10: 4Fe-4S diclu 98.8 2.3E-09 4.9E-14 81.5 2.0 48 447-495 2-52 (52)
80 COG1145 NapF Ferredoxin [Energ 98.8 2.5E-09 5.3E-14 91.9 2.3 57 448-504 25-85 (99)
81 PRK06273 ferredoxin; Provision 98.8 2.5E-09 5.5E-14 100.9 2.3 56 446-501 43-110 (165)
82 CHL00014 ndhI NADH dehydrogena 98.8 5E-09 1.1E-13 99.5 4.3 64 442-505 49-122 (167)
83 COG1149 MinD superfamily P-loo 98.8 2.7E-09 5.9E-14 106.2 2.1 60 446-505 63-122 (284)
84 TIGR02060 aprB adenosine phosp 98.7 3.9E-09 8.4E-14 95.9 2.6 59 447-505 3-68 (132)
85 TIGR01971 NuoI NADH-quinone ox 98.7 6.2E-09 1.3E-13 93.6 3.3 63 443-505 29-105 (122)
86 TIGR00397 mauM_napG MauM/NapG 98.7 8.9E-09 1.9E-13 101.5 4.0 92 386-504 92-199 (213)
87 TIGR03048 PS_I_psaC photosyste 98.7 9.8E-09 2.1E-13 85.3 2.7 57 448-504 4-67 (80)
88 TIGR02494 PFLE_PFLC glycyl-rad 98.7 6.5E-09 1.4E-13 107.7 1.8 61 444-504 40-104 (295)
89 PRK12769 putative oxidoreducta 98.6 1.9E-08 4.1E-13 115.5 4.2 86 384-505 53-148 (654)
90 PRK10194 ferredoxin-type prote 98.6 2.2E-08 4.7E-13 94.8 3.2 50 454-503 106-159 (163)
91 PRK09477 napH quinol dehydroge 98.6 1.8E-08 4E-13 103.1 2.6 56 449-504 205-264 (271)
92 PRK08318 dihydropyrimidine deh 98.6 2.7E-08 5.8E-13 108.3 4.0 75 444-519 334-414 (420)
93 PRK02651 photosystem I subunit 98.6 2.9E-08 6.3E-13 82.6 3.1 58 448-505 5-69 (81)
94 TIGR02163 napH_ ferredoxin-typ 98.6 2.9E-08 6.2E-13 100.8 3.6 53 450-502 199-254 (255)
95 PRK09476 napG quinol dehydroge 98.6 3.3E-08 7.2E-13 100.0 3.9 56 448-503 133-207 (254)
96 PF13247 Fer4_11: 4Fe-4S diclu 98.6 3.3E-08 7.2E-13 85.2 2.7 58 448-505 3-63 (98)
97 PRK12809 putative oxidoreducta 98.5 4E-08 8.7E-13 112.4 3.8 80 384-504 53-139 (639)
98 TIGR00402 napF ferredoxin-type 98.5 3.5E-08 7.6E-13 85.8 2.4 55 448-502 30-86 (101)
99 COG4656 RnfC Predicted NADH:ub 98.5 1.3E-08 2.8E-13 109.2 -1.0 123 452-575 365-499 (529)
100 TIGR01660 narH nitrate reducta 98.5 6.4E-08 1.4E-12 102.8 3.2 59 446-504 175-236 (492)
101 PRK14028 pyruvate ferredoxin o 98.5 4.5E-08 9.6E-13 102.4 2.0 58 446-503 241-310 (312)
102 TIGR02700 flavo_MJ0208 archaeo 98.5 6.4E-08 1.4E-12 97.0 2.7 57 447-504 143-199 (234)
103 COG1142 HycB Fe-S-cluster-cont 98.5 9.5E-08 2.1E-12 89.3 3.1 52 452-504 51-104 (165)
104 COG1140 NarY Nitrate reductase 98.4 4.4E-08 9.6E-13 100.2 -0.0 122 341-503 138-270 (513)
105 TIGR02512 Fe_only_hydrog hydro 98.4 8.5E-08 1.8E-12 102.7 1.7 56 447-502 2-70 (374)
106 TIGR03478 DMSO_red_II_bet DMSO 98.4 1.4E-07 3E-12 96.6 2.8 59 446-504 123-184 (321)
107 PRK10194 ferredoxin-type prote 98.4 1.2E-07 2.6E-12 89.7 1.7 53 450-502 32-86 (163)
108 COG2768 Uncharacterized Fe-S c 98.4 1.5E-07 3.1E-12 94.5 2.2 54 446-501 187-240 (354)
109 TIGR02912 sulfite_red_C sulfit 98.3 1.8E-07 3.9E-12 97.9 2.5 56 447-503 164-222 (314)
110 TIGR03224 benzo_boxA benzoyl-C 98.3 2.1E-07 4.4E-12 100.9 2.7 55 447-502 5-59 (411)
111 cd00671 ArgRS_core catalytic c 98.3 5.8E-07 1.2E-11 88.8 5.6 88 8-118 115-211 (212)
112 TIGR03287 methan_mark_16 putat 98.3 3E-07 6.4E-12 97.1 3.7 57 444-504 294-352 (391)
113 COG2221 DsrA Dissimilatory sul 98.3 1.4E-07 3E-12 96.0 1.0 49 447-496 167-215 (317)
114 PRK07118 ferredoxin; Validated 98.3 3.3E-07 7.1E-12 94.1 3.0 56 449-505 210-265 (280)
115 PRK00783 DNA-directed RNA poly 98.3 3.7E-07 8.1E-12 93.1 3.1 58 447-505 165-222 (263)
116 cd07030 RNAP_D D subunit of Ar 98.3 3.9E-07 8.4E-12 92.8 3.0 55 451-505 168-222 (259)
117 TIGR03149 cyt_nit_nrfC cytochr 98.3 4.4E-07 9.4E-12 90.4 3.1 57 447-503 87-146 (225)
118 TIGR01582 FDH-beta formate deh 98.3 5.2E-07 1.1E-11 92.4 3.2 58 446-503 85-145 (283)
119 TIGR03294 FrhG coenzyme F420 h 98.2 7.4E-07 1.6E-11 88.8 4.1 56 446-502 168-223 (228)
120 PRK13984 putative oxidoreducta 98.2 5.6E-07 1.2E-11 102.5 3.6 65 440-504 33-108 (604)
121 TIGR02176 pyruv_ox_red pyruvat 98.2 4.4E-07 9.4E-12 109.4 2.6 60 446-505 677-764 (1165)
122 PRK14993 tetrathionate reducta 98.2 5.1E-07 1.1E-11 90.9 2.5 56 449-504 95-152 (244)
123 PF12837 Fer4_6: 4Fe-4S bindin 98.2 3.8E-07 8.1E-12 57.7 0.5 23 447-469 2-24 (24)
124 COG0437 HybA Fe-S-cluster-cont 98.2 8.6E-07 1.9E-11 85.7 3.0 58 447-504 62-122 (203)
125 PRK09898 hypothetical protein; 98.1 1.6E-06 3.5E-11 85.4 3.5 59 445-503 114-175 (208)
126 PRK15449 ferredoxin-like prote 98.1 1.6E-06 3.5E-11 73.7 3.0 58 441-499 19-78 (95)
127 PF13484 Fer4_16: 4Fe-4S doubl 98.1 7.8E-07 1.7E-11 71.1 0.7 45 453-497 1-67 (67)
128 PRK13795 hypothetical protein; 98.1 1.4E-06 3E-11 99.3 2.8 56 447-502 576-632 (636)
129 TIGR02951 DMSO_dmsB DMSO reduc 98.1 2.2E-06 4.7E-11 81.0 3.6 56 448-503 58-116 (161)
130 PRK10882 hydrogenase 2 protein 98.1 1.7E-06 3.7E-11 90.3 2.7 56 448-503 106-164 (328)
131 TIGR00397 mauM_napG MauM/NapG 98.1 2.3E-06 4.9E-11 84.5 3.4 56 448-503 87-159 (213)
132 PRK09326 F420H2 dehydrogenase 98.0 1.7E-06 3.6E-11 91.6 2.1 52 448-499 8-70 (341)
133 PRK09476 napG quinol dehydroge 98.0 3.6E-06 7.9E-11 85.2 3.4 54 450-503 95-165 (254)
134 PF00037 Fer4: 4Fe-4S binding 98.0 3.4E-06 7.4E-11 53.4 1.6 22 448-469 2-23 (24)
135 PRK10330 formate dehydrogenase 98.0 4.5E-06 9.7E-11 80.4 3.0 52 451-503 55-108 (181)
136 PRK12771 putative glutamate sy 97.9 3.9E-06 8.5E-11 94.8 2.7 57 447-503 499-562 (564)
137 TIGR02745 ccoG_rdxA_fixG cytoc 97.9 3.8E-06 8.2E-11 91.0 1.8 47 451-504 230-276 (434)
138 COG4231 Indolepyruvate ferredo 97.9 6E-06 1.3E-10 90.9 2.1 57 446-503 571-629 (640)
139 TIGR03315 Se_ygfK putative sel 97.8 7.1E-06 1.5E-10 97.0 2.6 55 450-504 879-943 (1012)
140 PRK09853 putative selenate red 97.8 9E-06 1.9E-10 95.9 2.6 56 448-504 882-948 (1019)
141 TIGR02066 dsrB sulfite reducta 97.8 7.5E-06 1.6E-10 86.4 1.6 47 454-500 183-232 (341)
142 PF00037 Fer4: 4Fe-4S binding 97.8 1.3E-05 2.7E-10 50.8 1.9 23 478-500 2-24 (24)
143 PF04060 FeS: Putative Fe-S cl 97.8 1.5E-05 3.3E-10 55.2 2.4 34 381-414 1-34 (35)
144 PF12837 Fer4_6: 4Fe-4S bindin 97.8 6.3E-06 1.4E-10 52.1 0.4 23 477-499 2-24 (24)
145 TIGR03336 IOR_alpha indolepyru 97.8 1.2E-05 2.5E-10 91.5 2.3 51 445-499 543-595 (595)
146 COG1245 Predicted ATPase, RNas 97.7 1.9E-05 4.1E-10 84.0 2.8 60 446-505 5-73 (591)
147 cd00802 class_I_aaRS_core cata 97.7 1.2E-05 2.7E-10 74.1 0.9 62 52-118 78-143 (143)
148 PRK12809 putative oxidoreducta 97.7 2.2E-05 4.7E-10 90.1 2.6 54 449-503 51-106 (639)
149 PRK12769 putative oxidoreducta 97.6 3.7E-05 8E-10 88.5 3.5 53 450-503 52-106 (654)
150 PF13183 Fer4_8: 4Fe-4S diclus 97.6 5.6E-06 1.2E-10 63.8 -2.3 47 451-497 2-56 (57)
151 PRK13409 putative ATPase RIL; 97.6 3.7E-05 8.1E-10 87.2 3.1 60 446-505 4-72 (590)
152 COG1148 HdrA Heterodisulfide r 97.5 2.8E-05 6.2E-10 83.1 1.3 57 448-505 221-294 (622)
153 PF14697 Fer4_21: 4Fe-4S diclu 97.5 3E-05 6.4E-10 60.5 0.8 25 447-471 34-59 (59)
154 TIGR01945 rnfC electron transp 97.5 4.6E-05 1E-09 83.3 1.8 49 449-497 360-417 (435)
155 PF12797 Fer4_2: 4Fe-4S bindin 97.4 4.8E-05 1E-09 46.6 0.9 20 447-466 3-22 (22)
156 COG1143 NuoI Formate hydrogenl 97.4 7E-05 1.5E-09 71.1 1.6 28 446-473 89-116 (172)
157 PRK00941 acetyl-CoA decarbonyl 97.2 5.9E-05 1.3E-09 86.1 -0.5 53 446-498 398-458 (781)
158 COG2440 FixX Ferredoxin-like p 97.2 0.00024 5.2E-09 60.0 2.6 57 446-502 27-86 (99)
159 TIGR00276 iron-sulfur cluster 97.2 0.00013 2.7E-09 75.1 1.1 49 451-499 158-226 (282)
160 PRK07570 succinate dehydrogena 97.2 0.00017 3.6E-09 72.9 1.9 50 448-497 153-227 (250)
161 PRK13984 putative oxidoreducta 97.2 0.00023 4.9E-09 81.3 3.0 26 447-472 81-106 (604)
162 PF12798 Fer4_3: 4Fe-4S bindin 97.1 0.00014 3.1E-09 40.6 0.6 15 484-498 1-15 (15)
163 PF13534 Fer4_17: 4Fe-4S diclu 97.1 7E-05 1.5E-09 58.6 -1.0 45 453-497 1-59 (61)
164 TIGR00314 cdhA CO dehydrogenas 97.1 0.00011 2.4E-09 83.7 -0.0 50 448-497 395-452 (784)
165 cd01916 ACS_1 Acetyl-CoA synth 97.1 9.1E-05 2E-09 84.5 -1.1 51 448-498 361-419 (731)
166 TIGR03290 CoB_CoM_SS_C CoB--Co 97.1 0.00023 5E-09 65.9 1.7 47 452-498 2-62 (144)
167 COG1141 Fer Ferredoxin [Energy 97.1 0.00027 5.8E-09 56.4 1.7 56 446-502 2-67 (68)
168 TIGR02064 dsrA sulfite reducta 97.1 0.00023 4.9E-09 76.6 1.7 44 458-502 248-291 (402)
169 PF13459 Fer4_15: 4Fe-4S singl 97.1 0.00024 5.1E-09 56.5 1.3 54 447-501 1-65 (65)
170 TIGR00384 dhsB succinate dehyd 97.0 0.00018 4E-09 71.4 0.7 48 450-497 136-209 (220)
171 PF13370 Fer4_13: 4Fe-4S singl 97.0 0.00047 1E-08 53.6 2.8 52 449-501 1-58 (58)
172 PRK12814 putative NADPH-depend 97.0 0.00036 7.8E-09 80.3 3.2 55 412-466 574-630 (652)
173 KOG2282|consensus 97.0 0.00023 5.1E-09 76.1 0.7 116 397-512 117-245 (708)
174 PRK00750 lysK lysyl-tRNA synth 96.9 0.0033 7.1E-08 70.2 8.9 88 61-170 231-321 (510)
175 TIGR02486 RDH reductive dehalo 96.9 0.00045 9.8E-09 72.1 1.8 47 451-497 204-279 (314)
176 PRK06214 sulfite reductase; Pr 96.8 0.0011 2.3E-08 74.1 4.7 55 374-429 79-134 (530)
177 PRK04165 acetyl-CoA decarbonyl 96.8 0.0014 3E-08 71.4 5.1 53 381-433 11-63 (450)
178 PRK08222 hydrogenase 4 subunit 96.8 0.00065 1.4E-08 65.4 2.3 27 447-473 68-94 (181)
179 PF12798 Fer4_3: 4Fe-4S bindin 96.8 0.00043 9.4E-09 38.6 0.6 15 454-468 1-15 (15)
180 PRK12576 succinate dehydrogena 96.8 0.0005 1.1E-08 70.7 1.3 49 449-497 149-221 (279)
181 PRK13030 2-oxoacid ferredoxin 96.8 0.00073 1.6E-08 81.0 2.8 50 446-497 623-678 (1159)
182 TIGR01936 nqrA NADH:ubiquinone 96.7 0.00043 9.3E-09 75.5 0.6 52 450-502 371-433 (447)
183 TIGR00273 iron-sulfur cluster- 96.7 0.00051 1.1E-08 74.7 1.1 49 449-497 290-358 (432)
184 COG1139 Uncharacterized conser 96.7 0.00061 1.3E-08 72.2 1.2 51 451-502 307-377 (459)
185 PRK05352 Na(+)-translocating N 96.7 0.00057 1.2E-08 74.7 0.8 52 450-502 372-434 (448)
186 PRK09193 indolepyruvate ferred 96.6 0.0012 2.5E-08 79.2 2.8 50 446-497 637-692 (1165)
187 PRK12385 fumarate reductase ir 96.5 0.00084 1.8E-08 67.7 1.1 48 450-497 145-218 (244)
188 PRK08348 NADH-plastoquinone ox 96.5 0.0011 2.4E-08 59.4 1.6 27 447-473 68-94 (120)
189 PRK13029 2-oxoacid ferredoxin 96.5 0.0014 3E-08 78.4 2.8 49 446-496 651-705 (1186)
190 COG1144 Pyruvate:ferredoxin ox 96.5 0.0012 2.6E-08 55.1 1.4 25 449-473 63-87 (91)
191 PF12797 Fer4_2: 4Fe-4S bindin 96.5 0.0012 2.6E-08 40.5 1.0 20 477-496 3-22 (22)
192 PRK09625 porD pyruvate flavodo 96.4 0.0011 2.4E-08 60.5 1.1 25 447-471 84-108 (133)
193 PF12800 Fer4_4: 4Fe-4S bindin 96.4 0.0013 2.7E-08 38.1 0.8 15 452-466 2-16 (17)
194 PRK11168 glpC sn-glycerol-3-ph 96.4 0.0013 2.9E-08 71.0 1.7 48 450-497 5-69 (396)
195 COG1600 Uncharacterized Fe-S p 96.3 0.0016 3.4E-08 68.2 1.4 46 452-497 185-249 (337)
196 TIGR00403 ndhI NADH-plastoquin 96.3 0.0019 4.2E-08 62.3 1.8 27 447-473 97-123 (183)
197 PRK08640 sdhB succinate dehydr 96.2 0.0022 4.8E-08 64.8 1.9 48 450-497 150-224 (249)
198 TIGR03379 glycerol3P_GlpC glyc 96.2 0.0018 3.9E-08 70.0 1.2 47 451-497 4-67 (397)
199 TIGR02060 aprB adenosine phosp 96.2 0.0023 5E-08 58.3 1.5 25 448-472 41-65 (132)
200 PRK09624 porD pyuvate ferredox 96.1 0.0021 4.5E-08 56.3 1.1 26 447-472 76-101 (105)
201 PRK05950 sdhB succinate dehydr 96.1 0.0019 4E-08 64.8 0.8 48 450-497 139-213 (232)
202 TIGR02910 sulfite_red_A sulfit 96.1 0.0025 5.5E-08 66.8 1.5 21 481-502 300-320 (334)
203 PF13187 Fer4_9: 4Fe-4S diclus 96.1 0.0024 5.2E-08 48.6 1.0 20 450-469 36-55 (55)
204 PRK01611 argS arginyl-tRNA syn 96.0 0.0044 9.6E-08 69.3 2.9 135 7-178 229-387 (507)
205 PRK12387 formate hydrogenlyase 95.9 0.004 8.7E-08 59.9 2.0 49 455-503 9-59 (180)
206 PRK12386 fumarate reductase ir 95.9 0.0037 7.9E-08 63.2 1.6 48 450-497 140-215 (251)
207 PF10588 NADH-G_4Fe-4S_3: NADH 95.9 0.0079 1.7E-07 43.3 2.9 35 398-432 5-39 (41)
208 PRK15055 anaerobic sulfite red 95.9 0.0035 7.6E-08 66.1 1.5 20 482-502 307-326 (344)
209 PRK12577 succinate dehydrogena 95.9 0.0029 6.2E-08 66.8 0.9 48 451-498 151-225 (329)
210 PRK05888 NADH dehydrogenase su 95.8 0.0054 1.2E-07 58.1 2.5 27 447-473 92-118 (164)
211 KOG0063|consensus 95.8 0.0045 9.7E-08 65.9 2.1 56 446-503 8-71 (592)
212 PF13237 Fer4_10: 4Fe-4S diclu 95.8 0.0035 7.7E-08 47.2 0.9 20 446-465 33-52 (52)
213 PRK09623 vorD 2-ketoisovalerat 95.8 0.0043 9.4E-08 54.3 1.6 27 447-473 76-102 (105)
214 PRK13552 frdB fumarate reducta 95.8 0.0045 9.8E-08 62.2 1.8 49 449-497 146-221 (239)
215 PRK05113 electron transport co 95.8 0.0049 1.1E-07 59.9 1.9 26 447-472 139-164 (191)
216 PRK06273 ferredoxin; Provision 95.7 0.0035 7.6E-08 59.3 0.8 26 446-471 85-110 (165)
217 COG1035 FrhB Coenzyme F420-red 95.7 0.004 8.7E-08 65.0 1.3 47 449-496 2-48 (332)
218 COG1245 Predicted ATPase, RNas 95.7 0.004 8.7E-08 66.8 1.2 29 444-472 42-70 (591)
219 TIGR02179 PorD_KorD 2-oxoacid: 95.7 0.005 1.1E-07 50.5 1.5 27 447-473 50-76 (78)
220 PRK15449 ferredoxin-like prote 95.7 0.0028 6.1E-08 54.1 -0.1 27 443-469 52-78 (95)
221 TIGR02163 napH_ ferredoxin-typ 95.6 0.0056 1.2E-07 62.3 1.9 46 454-499 168-218 (255)
222 PRK06991 ferredoxin; Provision 95.6 0.034 7.3E-07 56.9 7.4 27 477-503 80-106 (270)
223 TIGR01944 rnfB electron transp 95.6 0.0053 1.2E-07 58.2 1.4 26 447-472 138-163 (165)
224 PRK12575 succinate dehydrogena 95.6 0.0055 1.2E-07 61.4 1.5 48 450-497 142-216 (235)
225 PF12800 Fer4_4: 4Fe-4S bindin 95.6 0.0063 1.4E-07 35.2 1.1 16 482-497 2-17 (17)
226 COG1152 CdhA CO dehydrogenase/ 95.5 0.0028 6.1E-08 69.1 -0.7 47 451-497 399-453 (772)
227 CHL00014 ndhI NADH dehydrogena 95.5 0.0063 1.4E-07 57.8 1.4 27 447-473 94-120 (167)
228 PRK05035 electron transport co 95.4 0.012 2.7E-07 67.7 3.9 20 449-468 406-425 (695)
229 PRK11274 glcF glycolate oxidas 95.4 0.0067 1.4E-07 65.8 1.6 47 451-497 22-88 (407)
230 PRK13409 putative ATPase RIL; 95.4 0.0061 1.3E-07 69.4 1.2 29 444-472 41-69 (590)
231 COG0479 FrdB Succinate dehydro 95.4 0.0071 1.5E-07 60.2 1.5 48 450-497 140-213 (234)
232 PRK06259 succinate dehydrogena 95.3 0.007 1.5E-07 67.3 1.4 48 450-497 131-200 (486)
233 TIGR01971 NuoI NADH-quinone ox 95.3 0.0063 1.4E-07 54.5 0.9 26 447-472 77-102 (122)
234 TIGR02936 fdxN_nitrog ferredox 95.3 0.0071 1.5E-07 51.2 1.0 25 448-472 66-90 (91)
235 TIGR03224 benzo_boxA benzoyl-C 95.3 0.01 2.3E-07 64.5 2.5 25 447-471 34-58 (411)
236 TIGR02066 dsrB sulfite reducta 95.3 0.007 1.5E-07 64.0 1.2 28 444-471 206-233 (341)
237 PRK02651 photosystem I subunit 95.2 0.014 3E-07 48.3 2.7 25 448-472 42-66 (81)
238 PRK14028 pyruvate ferredoxin o 95.2 0.0092 2E-07 62.5 1.9 26 448-473 285-310 (312)
239 PF12838 Fer4_7: 4Fe-4S diclus 95.2 0.0081 1.7E-07 45.3 1.0 24 445-468 29-52 (52)
240 PLN00129 succinate dehydrogena 95.1 0.009 1.9E-07 61.1 1.5 46 452-497 187-259 (276)
241 KOG0063|consensus 95.1 0.0056 1.2E-07 65.2 -0.1 55 447-501 45-99 (592)
242 TIGR02484 CitB CitB domain pro 95.1 0.009 1.9E-07 63.1 1.4 48 451-499 13-65 (372)
243 PRK08764 ferredoxin; Provision 95.1 0.011 2.4E-07 54.2 1.7 25 447-471 110-134 (135)
244 PRK09477 napH quinol dehydroge 95.1 0.0073 1.6E-07 62.0 0.6 46 455-500 176-226 (271)
245 KOG3256|consensus 95.0 0.0087 1.9E-07 55.3 0.9 27 447-473 145-171 (212)
246 TIGR03287 methan_mark_16 putat 95.0 0.013 2.7E-07 62.6 2.1 27 448-474 326-352 (391)
247 PRK08318 dihydropyrimidine deh 95.0 0.0065 1.4E-07 66.3 -0.1 27 447-473 372-399 (420)
248 COG1146 Ferredoxin [Energy pro 94.9 0.011 2.4E-07 47.3 1.2 28 446-473 35-62 (68)
249 COG0348 NapH Polyferredoxin [E 94.9 0.013 2.7E-07 63.3 1.9 56 448-503 207-266 (386)
250 COG0247 GlpC Fe-S oxidoreducta 94.9 0.0071 1.5E-07 64.9 -0.1 48 451-498 8-74 (388)
251 TIGR02745 ccoG_rdxA_fixG cytoc 94.9 0.011 2.3E-07 64.5 1.2 47 454-501 178-249 (434)
252 COG1150 HdrC Heterodisulfide r 94.9 0.0094 2E-07 57.1 0.7 47 451-498 38-99 (195)
253 cd00674 LysRS_core_class_I cat 94.8 0.11 2.4E-06 55.2 8.7 88 62-171 225-317 (353)
254 PF13484 Fer4_16: 4Fe-4S doubl 94.8 0.0077 1.7E-07 47.8 -0.1 21 483-503 1-21 (67)
255 PRK15033 tricarballylate utili 94.7 0.0094 2E-07 63.3 0.4 46 450-496 31-81 (389)
256 TIGR02912 sulfite_red_C sulfit 94.5 0.014 3E-07 61.3 0.9 28 446-473 195-222 (314)
257 COG1145 NapF Ferredoxin [Energ 94.5 0.013 2.7E-07 49.9 0.5 25 478-502 25-49 (99)
258 COG1453 Predicted oxidoreducta 94.4 0.019 4.1E-07 60.2 1.7 47 453-501 294-369 (391)
259 PRK12771 putative glutamate sy 94.3 0.018 3.9E-07 65.3 1.5 26 447-472 536-561 (564)
260 COG4231 Indolepyruvate ferredo 94.3 0.016 3.4E-07 64.6 1.0 28 446-473 602-629 (640)
261 PRK12418 cysteinyl-tRNA synthe 94.2 0.08 1.7E-06 56.9 5.9 133 26-184 172-315 (384)
262 COG2768 Uncharacterized Fe-S c 94.1 0.02 4.4E-07 58.3 1.1 27 446-472 215-241 (354)
263 PRK09626 oorD 2-oxoglutarate-a 94.1 0.025 5.5E-07 49.2 1.5 29 475-503 9-37 (103)
264 COG2221 DsrA Dissimilatory sul 94.0 0.019 4.2E-07 59.1 0.7 27 477-503 167-193 (317)
265 COG1149 MinD superfamily P-loo 94.0 0.019 4.2E-07 58.0 0.7 27 446-472 93-119 (284)
266 TIGR02700 flavo_MJ0208 archaeo 93.9 0.027 5.8E-07 56.6 1.5 26 447-472 172-197 (234)
267 COG1140 NarY Nitrate reductase 93.9 0.034 7.5E-07 57.9 2.3 55 448-502 177-234 (513)
268 PF13746 Fer4_18: 4Fe-4S diclu 93.7 0.027 5.9E-07 45.3 0.9 18 450-467 48-65 (69)
269 TIGR03447 mycothiol_MshC cyste 93.6 0.082 1.8E-06 57.2 4.6 135 25-183 198-341 (411)
270 PLN00071 photosystem I subunit 93.6 0.036 7.8E-07 45.8 1.5 26 478-503 5-30 (81)
271 TIGR02494 PFLE_PFLC glycyl-rad 93.5 0.04 8.6E-07 57.1 2.1 28 474-501 40-67 (295)
272 PRK14534 cysS cysteinyl-tRNA s 93.5 0.17 3.8E-06 55.8 7.1 128 23-177 185-327 (481)
273 TIGR02176 pyruv_ox_red pyruvat 93.5 0.031 6.7E-07 68.3 1.4 27 446-472 733-761 (1165)
274 TIGR00435 cysS cysteinyl-tRNA 93.5 0.27 5.9E-06 54.4 8.7 130 27-184 178-318 (465)
275 CHL00065 psaC photosystem I su 93.4 0.033 7.1E-07 46.2 1.0 25 448-472 42-66 (81)
276 COG1941 FrhG Coenzyme F420-red 93.4 0.03 6.6E-07 55.2 0.9 47 448-497 185-232 (247)
277 PF13746 Fer4_18: 4Fe-4S diclu 93.3 0.032 7E-07 44.9 0.8 17 483-500 51-67 (69)
278 PF09334 tRNA-synt_1g: tRNA sy 93.3 0.1 2.2E-06 56.5 4.8 101 59-182 278-380 (391)
279 PRK13795 hypothetical protein; 93.2 0.026 5.7E-07 64.7 0.2 26 446-471 606-631 (636)
280 TIGR02512 Fe_only_hydrog hydro 93.2 0.026 5.7E-07 60.6 0.2 26 447-472 45-70 (374)
281 cd07030 RNAP_D D subunit of Ar 93.2 0.13 2.9E-06 52.3 5.3 27 447-473 194-220 (259)
282 PRK11893 methionyl-tRNA synthe 93.2 0.26 5.7E-06 55.0 8.1 74 83-178 274-348 (511)
283 PRK09853 putative selenate red 93.1 0.05 1.1E-06 65.0 2.3 25 446-471 921-945 (1019)
284 COG2878 Predicted NADH:ubiquin 93.0 0.024 5.2E-07 53.6 -0.5 27 447-473 140-166 (198)
285 PRK00783 DNA-directed RNA poly 92.8 0.18 3.8E-06 51.5 5.5 26 448-473 195-220 (263)
286 PRK00260 cysS cysteinyl-tRNA s 92.8 0.33 7.1E-06 53.8 8.0 134 26-184 178-319 (463)
287 PRK14494 putative molybdopteri 92.7 0.057 1.2E-06 53.9 1.8 43 373-416 135-181 (229)
288 PRK14536 cysS cysteinyl-tRNA s 92.7 0.39 8.5E-06 53.3 8.4 126 26-178 188-328 (490)
289 TIGR03048 PS_I_psaC photosyste 92.7 0.046 1E-06 45.1 0.9 25 448-472 41-65 (80)
290 TIGR03315 Se_ygfK putative sel 92.2 0.075 1.6E-06 63.7 2.2 21 453-473 922-942 (1012)
291 PLN02946 cysteine-tRNA ligase 91.9 0.18 3.9E-06 56.7 4.6 126 25-177 234-370 (557)
292 COG3383 Uncharacterized anaero 91.9 0.043 9.2E-07 62.1 -0.4 22 449-470 189-210 (978)
293 TIGR03336 IOR_alpha indolepyru 90.9 0.13 2.9E-06 58.7 2.3 22 447-469 574-595 (595)
294 PLN02610 probable methionyl-tR 90.7 0.75 1.6E-05 54.3 8.3 98 66-183 304-404 (801)
295 TIGR00402 napF ferredoxin-type 90.6 0.16 3.5E-06 44.0 2.1 26 447-472 61-86 (101)
296 PRK08493 NADH dehydrogenase su 90.5 0.14 3.1E-06 60.1 2.1 22 451-472 203-224 (819)
297 PRK12451 arginyl-tRNA syntheta 90.1 0.37 8.1E-06 54.6 5.0 95 7-119 280-377 (562)
298 TIGR00398 metG methionyl-tRNA 90.0 0.84 1.8E-05 51.4 7.8 73 83-177 302-375 (530)
299 COG1456 CdhE CO dehydrogenase/ 89.8 0.32 6.9E-06 50.7 3.7 50 380-429 11-64 (467)
300 TIGR00467 lysS_arch lysyl-tRNA 89.5 1.5 3.2E-05 49.2 8.9 89 62-173 223-317 (515)
301 PF01406 tRNA-synt_1e: tRNA sy 89.0 0.43 9.3E-06 49.4 4.0 124 25-175 163-297 (300)
302 PRK09326 F420H2 dehydrogenase 88.9 0.17 3.7E-06 53.7 1.1 27 477-503 7-33 (341)
303 PTZ00399 cysteinyl-tRNA-synthe 88.5 0.78 1.7E-05 52.9 6.1 63 100-179 302-364 (651)
304 TIGR00456 argS arginyl-tRNA sy 88.0 0.52 1.1E-05 53.6 4.3 94 7-119 282-378 (566)
305 TIGR00395 leuS_arch leucyl-tRN 87.9 1.4 3E-05 53.1 8.0 68 100-184 607-674 (938)
306 COG0215 CysS Cysteinyl-tRNA sy 87.2 2 4.3E-05 47.0 7.9 135 14-176 169-314 (464)
307 COG4871 Uncharacterized protei 87.2 0.25 5.5E-06 45.7 0.9 35 381-415 133-167 (193)
308 PRK00133 metG methionyl-tRNA s 87.0 1.7 3.7E-05 50.4 7.9 76 83-180 304-382 (673)
309 PF06902 Fer4_19: Divergent 4F 86.8 0.45 9.8E-06 37.7 2.0 58 445-503 6-63 (64)
310 PRK07569 bidirectional hydroge 86.6 0.31 6.7E-06 48.9 1.3 24 449-472 187-210 (234)
311 PRK12267 methionyl-tRNA synthe 86.3 1.9 4.2E-05 49.8 7.8 78 83-182 274-353 (648)
312 PRK12268 methionyl-tRNA synthe 85.8 2.5 5.3E-05 47.9 8.2 60 100-175 321-380 (556)
313 TIGR00384 dhsB succinate dehyd 85.5 0.81 1.8E-05 45.4 3.6 18 451-468 193-210 (220)
314 PRK14535 cysS cysteinyl-tRNA s 85.5 1.5 3.3E-05 50.2 6.1 128 27-176 405-554 (699)
315 TIGR03294 FrhG coenzyme F420 h 85.1 0.38 8.3E-06 48.1 1.1 26 478-503 170-195 (228)
316 TIGR01945 rnfC electron transp 85.1 0.65 1.4E-05 51.0 2.9 21 448-468 398-418 (435)
317 PLN02286 arginine-tRNA ligase 84.9 3 6.5E-05 47.5 8.2 84 27-119 297-384 (576)
318 COG1453 Predicted oxidoreducta 84.7 0.53 1.1E-05 49.7 1.9 19 450-468 349-367 (391)
319 TIGR00314 cdhA CO dehydrogenas 84.4 0.65 1.4E-05 53.8 2.6 19 450-468 435-453 (784)
320 TIGR03290 CoB_CoM_SS_C CoB--Co 84.3 1.2 2.6E-05 41.1 3.9 18 452-469 46-63 (144)
321 PF13459 Fer4_15: 4Fe-4S singl 84.1 0.47 1E-05 37.5 1.0 24 478-502 2-25 (65)
322 TIGR02486 RDH reductive dehalo 83.8 0.41 8.9E-06 50.2 0.7 24 482-505 205-228 (314)
323 PLN02224 methionine-tRNA ligas 83.8 3.6 7.9E-05 47.2 8.3 96 66-184 324-422 (616)
324 cd02156 nt_trans nucleotidyl t 83.5 0.67 1.5E-05 40.2 1.8 47 67-118 59-105 (105)
325 COG2000 Predicted Fe-S protein 83.0 0.82 1.8E-05 43.6 2.2 38 378-415 11-48 (226)
326 COG1152 CdhA CO dehydrogenase/ 82.9 0.65 1.4E-05 51.4 1.8 34 138-171 154-188 (772)
327 cd01916 ACS_1 Acetyl-CoA synth 81.8 0.91 2E-05 52.6 2.5 18 451-468 402-419 (731)
328 TIGR00276 iron-sulfur cluster 81.7 0.51 1.1E-05 48.7 0.4 21 481-501 158-178 (282)
329 PF13370 Fer4_13: 4Fe-4S singl 81.5 0.59 1.3E-05 36.2 0.6 24 479-503 1-24 (58)
330 PRK00941 acetyl-CoA decarbonyl 80.8 1 2.2E-05 52.3 2.4 19 450-468 440-458 (781)
331 PF13183 Fer4_8: 4Fe-4S diclus 80.5 0.59 1.3E-05 35.5 0.3 16 452-467 41-56 (57)
332 cd00812 LeuRS_core catalytic c 80.4 1.7 3.6E-05 45.6 3.7 53 100-170 262-314 (314)
333 TIGR01973 NuoG NADH-quinone ox 80.2 0.84 1.8E-05 52.3 1.5 20 453-472 183-202 (603)
334 cd00668 Ile_Leu_Val_MetRS_core 80.2 2.9 6.3E-05 43.6 5.5 50 100-165 259-309 (312)
335 COG1141 Fer Ferredoxin [Energy 79.9 0.81 1.8E-05 36.7 0.9 20 478-497 4-23 (68)
336 PRK12576 succinate dehydrogena 79.2 1.5 3.2E-05 45.3 2.8 17 452-468 206-222 (279)
337 PRK11168 glpC sn-glycerol-3-ph 79.1 1.4 2.9E-05 47.6 2.7 18 451-468 53-70 (396)
338 PRK12575 succinate dehydrogena 78.9 1.7 3.8E-05 43.6 3.2 18 452-469 201-218 (235)
339 COG1150 HdrC Heterodisulfide r 78.5 1.4 2.9E-05 42.6 2.1 20 451-470 82-101 (195)
340 TIGR00273 iron-sulfur cluster- 78.4 1.9 4.1E-05 47.2 3.5 18 452-469 343-360 (432)
341 COG0143 MetG Methionyl-tRNA sy 78.4 5.4 0.00012 45.1 7.1 96 64-182 289-386 (558)
342 COG1600 Uncharacterized Fe-S p 78.1 0.81 1.8E-05 48.2 0.5 26 482-507 185-210 (337)
343 PRK12300 leuS leucyl-tRNA synt 77.4 6.6 0.00014 47.2 8.0 63 100-178 564-626 (897)
344 PRK11274 glcF glycolate oxidas 76.9 2.5 5.3E-05 45.9 3.9 18 451-468 72-89 (407)
345 PRK12577 succinate dehydrogena 76.7 1.9 4.2E-05 45.5 2.9 17 452-468 209-225 (329)
346 cd00814 MetRS_core catalytic c 76.5 5.3 0.00011 41.9 6.1 81 65-167 237-318 (319)
347 PF13534 Fer4_17: 4Fe-4S diclu 76.4 1 2.2E-05 34.8 0.5 20 449-468 41-60 (61)
348 PRK05950 sdhB succinate dehydr 76.3 2.2 4.8E-05 42.6 3.1 17 452-468 198-214 (232)
349 TIGR02064 dsrA sulfite reducta 76.0 1.7 3.6E-05 47.2 2.2 25 446-471 266-290 (402)
350 cd07032 RNAP_I_II_AC40 AC40 su 74.3 2.1 4.6E-05 44.3 2.4 48 456-503 201-253 (291)
351 TIGR02910 sulfite_red_A sulfit 73.9 1.4 3.1E-05 46.5 1.0 20 449-468 298-317 (334)
352 PRK15033 tricarballylate utili 72.9 1.9 4.1E-05 46.1 1.7 16 451-466 66-81 (389)
353 PRK13208 valS valyl-tRNA synth 72.4 7.6 0.00016 46.1 6.7 67 100-184 519-586 (800)
354 PRK13030 2-oxoacid ferredoxin 72.3 1.7 3.6E-05 53.1 1.2 21 446-466 656-677 (1159)
355 PRK12385 fumarate reductase ir 70.8 1.8 3.9E-05 43.8 0.9 17 452-468 203-219 (244)
356 PRK08166 NADH dehydrogenase su 70.8 2 4.4E-05 51.2 1.5 20 453-472 190-209 (847)
357 COG1139 Uncharacterized conser 70.6 1 2.3E-05 48.4 -0.9 19 450-468 356-374 (459)
358 PRK09193 indolepyruvate ferred 70.3 2 4.3E-05 52.3 1.2 21 446-466 670-691 (1165)
359 PRK15055 anaerobic sulfite red 69.3 1.9 4E-05 45.8 0.6 19 450-468 305-323 (344)
360 PRK07860 NADH dehydrogenase su 69.0 2.4 5.1E-05 50.3 1.5 19 453-471 191-209 (797)
361 PRK09130 NADH dehydrogenase su 69.0 2.8 6.1E-05 48.8 2.1 19 453-471 186-204 (687)
362 cd00672 CysRS_core catalytic c 68.7 7.9 0.00017 38.3 4.9 84 51-162 122-207 (213)
363 PRK07570 succinate dehydrogena 68.6 2.3 4.9E-05 43.2 1.0 21 479-499 154-174 (250)
364 PRK13029 2-oxoacid ferredoxin 68.4 2.3 4.9E-05 51.8 1.2 21 446-466 684-705 (1186)
365 PRK09129 NADH dehydrogenase su 68.3 2.6 5.7E-05 49.8 1.7 19 454-472 186-204 (776)
366 COG4656 RnfC Predicted NADH:ub 68.2 1.6 3.5E-05 48.0 -0.1 20 449-468 401-420 (529)
367 TIGR00422 valS valyl-tRNA synt 67.9 14 0.00031 44.3 7.7 68 100-184 511-579 (861)
368 COG1035 FrhB Coenzyme F420-red 66.6 2.8 6E-05 44.2 1.2 26 479-505 2-27 (332)
369 TIGR02484 CitB CitB domain pro 65.6 2.3 5E-05 45.3 0.5 18 451-468 47-64 (372)
370 PF00749 tRNA-synt_1c: tRNA sy 65.3 4.2 9E-05 42.7 2.3 46 138-184 254-300 (314)
371 COG0247 GlpC Fe-S oxidoreducta 63.6 5.3 0.00011 42.7 2.8 19 451-469 57-75 (388)
372 PRK06039 ileS isoleucyl-tRNA s 63.5 12 0.00026 45.4 6.1 69 100-184 578-647 (975)
373 PLN02943 aminoacyl-tRNA ligase 63.0 14 0.0003 44.9 6.3 67 101-185 570-637 (958)
374 PRK06259 succinate dehydrogena 60.5 2.2 4.8E-05 47.5 -0.9 18 451-468 184-201 (486)
375 PRK08640 sdhB succinate dehydr 59.2 3.7 8.1E-05 41.6 0.6 19 480-498 150-168 (249)
376 cd00817 ValRS_core catalytic c 58.9 21 0.00045 38.5 6.3 76 70-166 302-380 (382)
377 COG0008 GlnS Glutamyl- and glu 56.7 6.7 0.00014 43.5 2.1 66 136-201 257-322 (472)
378 PRK12386 fumarate reductase ir 56.3 4.4 9.5E-05 41.1 0.5 19 480-498 140-158 (251)
379 COG0018 ArgS Arginyl-tRNA synt 55.6 34 0.00073 39.0 7.5 96 8-120 288-390 (577)
380 PLN02959 aminoacyl-tRNA ligase 55.3 26 0.00057 43.1 7.0 62 101-178 706-767 (1084)
381 PRK12814 putative NADPH-depend 54.1 6.9 0.00015 45.3 1.7 19 477-495 611-629 (652)
382 PRK13552 frdB fumarate reducta 53.6 5.1 0.00011 40.3 0.5 19 480-498 147-165 (239)
383 PRK05729 valS valyl-tRNA synth 53.4 37 0.00079 40.9 7.7 67 100-183 506-573 (874)
384 PLN00129 succinate dehydrogena 52.1 5.7 0.00012 40.9 0.5 18 481-498 186-203 (276)
385 COG0479 FrdB Succinate dehydro 50.8 6 0.00013 39.6 0.5 19 480-498 140-158 (234)
386 PF01921 tRNA-synt_1f: tRNA sy 50.8 13 0.00027 39.7 2.9 75 62-158 232-311 (360)
387 PF00750 tRNA-synt_1d: tRNA sy 47.6 9 0.0002 40.9 1.3 93 8-120 194-295 (354)
388 COG1941 FrhG Coenzyme F420-red 46.8 9.3 0.0002 38.1 1.1 21 483-503 191-211 (247)
389 TIGR00392 ileS isoleucyl-tRNA 46.6 30 0.00064 41.6 5.5 67 100-183 597-664 (861)
390 PTZ00305 NADH:ubiquinone oxido 46.0 7.4 0.00016 40.1 0.3 27 478-504 208-238 (297)
391 PF04147 Nop14: Nop14-like fam 45.0 3 6.6E-05 49.6 -3.1 40 23-90 537-576 (840)
392 PRK05743 ileS isoleucyl-tRNA s 44.5 57 0.0012 39.5 7.5 87 68-175 549-637 (912)
393 COG2440 FixX Ferredoxin-like p 43.2 11 0.00025 32.2 0.9 28 444-471 57-85 (99)
394 PRK14900 valS valyl-tRNA synth 42.4 38 0.00083 41.6 5.6 68 100-184 524-592 (1052)
395 TIGR01936 nqrA NADH:ubiquinone 42.4 9.5 0.00021 42.0 0.5 19 480-498 371-389 (447)
396 TIGR03379 glycerol3P_GlpC glyc 42.4 10 0.00022 40.9 0.7 16 482-497 5-20 (397)
397 cd00818 IleRS_core catalytic c 41.4 35 0.00075 36.1 4.5 51 100-166 285-336 (338)
398 smart00422 HTH_MERR helix_turn 38.7 33 0.00072 26.7 3.0 23 136-158 47-69 (70)
399 COG4624 Iron only hydrogenase 37.3 12 0.00026 40.0 0.2 53 452-505 2-57 (411)
400 KOG2007|consensus 35.5 90 0.0019 34.7 6.4 118 18-163 210-339 (586)
401 PRK05352 Na(+)-translocating N 35.0 21 0.00046 39.3 1.7 20 449-468 410-431 (448)
402 COG3592 Uncharacterized conser 33.4 15 0.00032 29.4 0.1 54 446-502 17-72 (74)
403 PF13720 Acetyltransf_11: Udp 32.9 38 0.00082 28.2 2.5 20 135-154 16-35 (83)
404 COG1034 NuoG NADH dehydrogenas 32.8 15 0.00033 42.6 0.1 18 455-472 187-204 (693)
405 PRK12285 tryptophanyl-tRNA syn 32.7 27 0.00059 37.5 2.0 51 63-119 202-257 (368)
406 PHA02591 hypothetical protein; 30.7 46 0.00099 27.4 2.5 45 114-163 24-73 (83)
407 PRK13354 tyrosyl-tRNA syntheta 30.5 1.4E+02 0.003 32.7 7.0 61 51-119 175-236 (410)
408 COG0348 NapH Polyferredoxin [E 27.7 20 0.00044 38.7 0.0 18 453-470 246-263 (386)
409 PRK12810 gltD glutamate syntha 27.6 13 0.00028 41.2 -1.5 22 448-469 40-63 (471)
410 PRK15367 type III secretion sy 26.5 36 0.00078 36.7 1.6 77 125-202 154-233 (395)
411 PLN02882 aminoacyl-tRNA ligase 25.8 1E+02 0.0022 38.4 5.5 69 100-184 600-670 (1159)
412 PF08671 SinI: Anti-repressor 25.7 99 0.0021 20.7 3.0 20 139-158 9-28 (30)
413 KOG1799|consensus 24.8 26 0.00055 37.0 0.1 54 443-496 202-259 (471)
414 cd00395 Tyr_Trp_RS_core cataly 24.8 69 0.0015 32.9 3.3 51 63-119 152-204 (273)
415 PRK13804 ileS isoleucyl-tRNA s 24.6 2E+02 0.0044 35.1 7.7 59 100-175 616-675 (961)
416 cd00805 TyrRS_core catalytic c 23.5 38 0.00083 34.6 1.2 82 63-160 150-235 (269)
417 KOG0436|consensus 23.3 70 0.0015 34.8 3.0 71 97-183 327-398 (578)
418 PF12554 MOZART1: Mitotic-spin 23.2 83 0.0018 23.5 2.5 20 140-159 28-47 (48)
419 PF00133 tRNA-synt_1: tRNA syn 22.7 1.8E+02 0.0039 33.4 6.5 86 64-168 514-600 (601)
420 cd00806 TrpRS_core catalytic c 22.7 62 0.0013 33.3 2.5 52 62-119 135-197 (280)
421 PF07750 GcrA: GcrA cell cycle 22.7 48 0.001 31.3 1.5 34 129-165 1-35 (162)
422 PRK00390 leuS leucyl-tRNA synt 22.5 1.9E+02 0.0041 34.6 6.8 61 101-183 563-623 (805)
423 KOG4258|consensus 22.0 22 0.00047 41.7 -1.1 18 450-467 248-271 (1025)
424 KOG4258|consensus 21.4 56 0.0012 38.5 2.0 23 480-502 248-276 (1025)
425 PF04885 Stig1: Stigma-specifi 20.9 68 0.0015 29.4 2.1 40 456-498 86-126 (136)
426 KOG1247|consensus 20.8 1.2E+02 0.0025 33.1 4.0 91 77-184 291-400 (567)
427 PTZ00427 isoleucine-tRNA ligas 20.4 1.5E+02 0.0032 37.1 5.4 68 101-184 707-776 (1205)
No 1
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-104 Score=854.63 Aligned_cols=363 Identities=56% Similarity=0.995 Sum_probs=348.7
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|++|++|||+|+||.++|++|||||+||++.++|||||+||+||||||||||||||+|||||||||+||++||++
T Consensus 163 m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~ 242 (554)
T PRK05347 163 MRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPL 242 (554)
T ss_pred HHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.|||++||| ...|.+++|+|||++|++||||++.+||++|.|+|||||||+||+|||||||+|+||++|+..+|
T Consensus 243 ~~~i~~alg~-----~~~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG 317 (554)
T PRK05347 243 YDWVLDNLPI-----PPHPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIG 317 (554)
T ss_pred HHHHHHHcCC-----CCCCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhC
Confidence 9999999996 15899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|++++.|+|++||++||++||+.|+|+|||++|++|+|+|++++..+.+++|+ ||++ ++|+|++.|+++||||+
T Consensus 318 ~s~~~~~i~~~~L~~~nRk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~----hP~~~~~G~r~i~~~~~iyIe~ 393 (554)
T PRK05347 318 VTKQDSVIDMSMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPN----HPEDPEMGTREVPFSRELYIER 393 (554)
T ss_pred CCCCCCeecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecC----CCCCCcCceEEEEEcCeEEEEh
Confidence 999999999999999999999999999999999999999999877777899999 9999 99999999999999999
Q ss_pred CcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecCC
Q psy9414 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKS 319 (582)
Q Consensus 240 ~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~~ 319 (582)
+||++.++++|+||++ |++||||++++|+|+++.+|++|.|++++|+|+++++++. .+.++|+|++|||||+.
T Consensus 394 ~D~~~~~~~~~~rl~~------g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~-~~~~kk~k~~IhWv~~~ 466 (554)
T PRK05347 394 EDFMEEPPKKYFRLVP------GKEVRLRNAYVIKCEEVVKDADGNITEIHCTYDPDTLSGN-PADGRKVKGTIHWVSAA 466 (554)
T ss_pred HHhhccccccccccCC------CCEEEecCEEEEEEEEEEEcCCCCEEEEEEEEccccccCC-CccCcccCCEEEeeecC
Confidence 9999999999999999 9999999999999999999999999999999999887653 23446888999999988
Q ss_pred CCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 320 HALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 320 ~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
++++++|++||+||++++|+. +++|+++|||+|+.+..+++||++..+..++.+||||.|
T Consensus 467 ~~v~~~v~~yd~Lf~~~~p~~--~~~~~~~iN~~s~~~~~~~~E~~~~~~~~~~~~QfeR~G 526 (554)
T PRK05347 467 HAVPAEVRLYDRLFTVPNPAA--GKDFLDFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREG 526 (554)
T ss_pred CCEeEEEEEeccccCCCCCCc--cccHhHhcCCCceEEEeEEEcHHHhhCCCCCEEEEEEee
Confidence 899999999999999999986 589999999999988899999999999999999999994
No 2
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4e-101 Score=828.32 Aligned_cols=353 Identities=38% Similarity=0.662 Sum_probs=340.1
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|++|++|||+|+||.++|++|||||+|||...+||+|||+|+|||||||||+||||||||||||||.||.++++.
T Consensus 180 M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~ 259 (574)
T PTZ00437 180 MRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRES 259 (574)
T ss_pred HhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.||+++|+| .+|.+|||||||++|++||||++.+||++|+|+|||||||+||+|||||||+||||++|+..+|
T Consensus 260 y~wl~~~l~l------~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G 333 (574)
T PTZ00437 260 YFWLLEELNL------WRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVG 333 (574)
T ss_pred HHHHHHHhCC------cccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|++++.++|++||++||++||+.|+|+|||++|++|+|+|++.. +.+++|+ ||++ ++|+|++.|++.||||+
T Consensus 334 ~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~----hP~~~~~G~R~i~~~~~iyIe~ 407 (574)
T PTZ00437 334 ITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPN----HPRKPELGSRKVMFTDTFYVDR 407 (574)
T ss_pred CCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccC----CCCCCcCceEEEEEcCeEEEEH
Confidence 999999999999999999999999999999999999999998753 5789999 9999 99999999999999999
Q ss_pred Cccc-ccccccccccCCCCCCCCCc-eEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeec
Q psy9414 240 DDFM-EIPTKKYFRLYPPIGKNSGN-RVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWIS 317 (582)
Q Consensus 240 ~D~~-~~~~~~f~~l~~~~~~~~g~-~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~ 317 (582)
+||. +.++++|+||+| |+ .||||++++|+|+++++|++|.|+++++.+++++ .+|+|++|||||
T Consensus 408 ~D~~~~~~~~~f~rL~~------g~~~vrL~~~~~i~~~~~~~d~~g~v~~~~~~~d~~~--------~~k~k~~IhWvs 473 (574)
T PTZ00437 408 SDFRTEDNNSKFYGLAP------GPRVVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFER--------KDKPKTNISWVS 473 (574)
T ss_pred HHhhcccccccceecCC------CCeEEEeccEEEEEEEEEEECCCCCEEEEEEEecccc--------cccCCCeEEEee
Confidence 9998 678899999999 97 8999999999999999999999999999998652 237888999999
Q ss_pred CCCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 318 KSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 318 ~~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
+.++++++||+||+||++++|+. +++|+++|||+|+.+..+++|+++...+.++.|||||.|
T Consensus 474 ~~~~v~~evr~Yd~Lf~~~~p~~--~~~~~~~iNp~s~~~~~g~~E~~~~~~~~~~~~QfeR~G 535 (574)
T PTZ00437 474 ATACTPVEVRLYNALLKDDRAAI--DPEFLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFG 535 (574)
T ss_pred cCCceeEEEEeccccccCCCCCc--cccHhhhCCCCceEEEEEEEchhhhhCCCCCeEEEEEeE
Confidence 88899999999999999999986 589999999999999999999999999999999999994
No 3
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=5.8e-100 Score=853.08 Aligned_cols=365 Identities=50% Similarity=0.896 Sum_probs=347.7
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|++|++|||+|+||.++|++|||||+||+++++||||||+|+||||||||||||||+|||||||||+||++||++
T Consensus 165 m~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~ 244 (771)
T PRK14703 165 MRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAI 244 (771)
T ss_pred HhCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.|||++||+. ..+|++|+|+|||+.|++||||+|.+||++|.|+||||||||||+|||||||+|+||++|+..+|
T Consensus 245 ~~~l~~~l~~~----~~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG 320 (771)
T PRK14703 245 YDWVLDHLGPW----PPRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIG 320 (771)
T ss_pred HHHHHHHhCCC----CCCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhC
Confidence 99999999640 12599999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc--CCCceEEeecceEEEe
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY--KEKLRYFPISKILWIE 238 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~--~~G~r~i~~~~~i~i~ 238 (582)
+|++++.++|++||++||++||+.|+|+|||++|++|+|+|++++..+++++|+ ||++ ++|+|+|+|+++||||
T Consensus 321 ~s~~~~~i~~~~L~~~~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~----hp~~~~~~G~r~v~~~~~iyIe 396 (771)
T PRK14703 321 VAKTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPY----WPHDVPKEGSRKVPFTRELYIE 396 (771)
T ss_pred CCccCceecHHHHHHHHHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccC----CCCCCccCceEEEEEcCeEEEE
Confidence 999999999999999999999999999999999999999999877778899999 9996 8999999999999999
Q ss_pred cCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 239 RDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 239 ~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
++||++.++++|+||+| |++||||++|+|+|+++.+|++|.|++++|+|++++.++.+. .+|++++|||||+
T Consensus 397 ~~D~~~~~~~~~~~l~~------g~~vrL~~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~--~~k~k~~ihWv~~ 468 (771)
T PRK14703 397 RDDFSEDPPKGFKRLTP------GREVRLRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDT--GRKAAGVIHWVSA 468 (771)
T ss_pred hhHhhccccccccccCC------CCEEEecceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCcc--CCcCCcEEEEeec
Confidence 99999999999999999 999999999999999999999999999999999988754422 3488899999998
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEcccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLL 382 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~gl 382 (582)
.++++++||+||+||++++|+++ +++|+++|||+|+.+..+++||++.....+++|||||.|.
T Consensus 469 ~~~v~~~vr~Yd~Lf~~~~p~~~-~~~~~~~lN~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gy 531 (771)
T PRK14703 469 KHALPAEVRLYDRLFKVPQPEAA-DEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGY 531 (771)
T ss_pred CCCeeEEEEecccccCCCCCCcc-ccchHhhcCCCCceeEccEEcHhHhhCCCCCEEEEEEeEE
Confidence 88999999999999999999843 6899999999999999999999999999999999999953
No 4
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=3.9e-100 Score=844.67 Aligned_cols=358 Identities=43% Similarity=0.769 Sum_probs=339.5
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|++++|++|||+|+||.++|++|||||+|||...+|||||++|+||||||||||||||+|||||||||+||++|+++
T Consensus 393 m~~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~ 472 (788)
T PLN02859 393 MRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRAS 472 (788)
T ss_pred HHhchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.|||++||| .+|.|+||||||++|++||||++.+||++|+|+|||||||+||+|||||||+|+||++|+..+|
T Consensus 473 y~wl~~aLg~------~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG 546 (788)
T PLN02859 473 YYWLLDSLGL------YQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIG 546 (788)
T ss_pred HHHHHHHcCC------CCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-cccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEe
Q psy9414 161 VSKSDS-WINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIE 238 (582)
Q Consensus 161 ~s~~~~-~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~ 238 (582)
+|++++ .|+|+.|+++||++|++.++|+|||++|++|+|+|+|++..+.+++|+ .-.||++ ++|+|+|+|++.||||
T Consensus 547 ~s~~~~e~i~~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~-~P~~p~~~~~g~r~v~f~~~iyIe 625 (788)
T PLN02859 547 ITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKR-WPDAQNDDPSAFYKVPFSRVVYIE 625 (788)
T ss_pred CCCCCCceecHHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeeccccc-CCCCCCCccCceEEEEECCeEEEE
Confidence 999998 999999999999999999999999999999999999987777777744 0006667 8999999999999999
Q ss_pred cCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEE-ecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeec
Q psy9414 239 RDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFK-KNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWIS 317 (582)
Q Consensus 239 ~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~-~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~ 317 (582)
++||++.++++|+||+| |++|||+++++|+|++++ +|++|.|++|+|+|++++. .|+|++|||||
T Consensus 626 ~~D~~~~~~~~~~rL~p------g~~V~L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~--------~K~k~~ihWvs 691 (788)
T PLN02859 626 RSDFRLKDSKDYYGLAP------GKSVLLRYAFPIKCTDVVLADDNETVVEIRAEYDPEKK--------TKPKGVLHWVA 691 (788)
T ss_pred hHHhhccccccceecCC------CCEEEEcceeEEEEEEEEEeCCCCCEEEEEEEEccCCC--------CccCceEEeee
Confidence 99999999999999999 999999999999999998 8999999999999997543 28899999999
Q ss_pred CC----CCeeeEEEeccccccCCCCCccCCCcccccccCCceEEE-EEEEccccccccccccccccccc
Q psy9414 318 KS----HALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVI-SAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 318 ~~----~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~-~~~vep~l~~~~~~d~~QfeR~g 381 (582)
+. +++++|+|+||+||++++|++ .++|+++|||+|+.+. .+++++++....++++|||||.|
T Consensus 692 ~~~~~~~~~~~e~r~yd~Lf~~~~p~~--~~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~G 758 (788)
T PLN02859 692 EPSPGVEPLKVEVRLFDKLFLSENPAE--LEDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLG 758 (788)
T ss_pred cCCCCCCceeEEEEeehhhcCCCCCcc--cccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeee
Confidence 73 579999999999999999987 4789999999999998 49999999999999999999994
No 5
>KOG1148|consensus
Probab=100.00 E-value=1.2e-99 Score=793.34 Aligned_cols=356 Identities=42% Similarity=0.730 Sum_probs=342.3
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|+||+++||||+||+++||.|+|+|+|||.+.||||||+|||||||||||||++||+|+|||||||.||..++..
T Consensus 378 Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~S 457 (764)
T KOG1148|consen 378 MRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSS 457 (764)
T ss_pred HhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.||+.+|+. +.|.||||||||++||+||||||.+||.+|+|.|||||||+||.+|||||++|+||++|+..+|
T Consensus 458 Y~WLcnaL~i------Y~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lG 531 (764)
T KOG1148|consen 458 YYWLCNALEI------YCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLG 531 (764)
T ss_pred HHHHHhhhhc------ccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|.+...++...|++..|++|+..+||.|+|++|+||+|+|++++..+.+++|+ .|++ .+|+|+++|++.||||+
T Consensus 532 vT~a~~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd----~P~dp~~g~~~Vpft~vIYIEr 607 (764)
T KOG1148|consen 532 VTTAQTTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPD----FPGDPTSGFHKVPFTRVIYIER 607 (764)
T ss_pred cceeeceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCC----CCCCCccccccccccceEEEEc
Confidence 999999999999999999999999999999999999999999998888899999 9999 99999999999999999
Q ss_pred CcccccccccccccCCCCCCCCCceEEEee-cEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRY-GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 240 ~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~-~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
+||+++++|+|+||+| |+.|+|++ +++|....+.+|.+|.|++|+++|++-++ + +|||++|||||.
T Consensus 608 SDFkee~dK~f~RLtp------gQpVGLr~~~~vi~~~~vvkD~~g~v~ei~v~yd~~s~-----~--~KPK~fIhWVse 674 (764)
T KOG1148|consen 608 SDFKEEDDKDFFRLTP------GQPVGLRYAGYVIRVVKVVKDDEGTVIEIHVEYDPASK-----K--KKPKAFIHWVSE 674 (764)
T ss_pred ccccccCCcchhccCC------CCcceeEeecceEEEEEEeeCCCCceEEEEEEeccccc-----c--cCCceeEEeccC
Confidence 9999999999999999 99999988 68888888999999999999999997332 2 399999999997
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEE-EEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS-AYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~-~~vep~l~~~~~~d~~QfeR~g 381 (582)
+++.||+|+|++||+.++|++. .+.|+.+|||+|+.|+. ++++..+....+.++|||+|.|
T Consensus 675 -~Pv~vEvRlye~LFks~NP~d~-~e~fLsDiNp~S~~V~~~a~~D~~~~~a~v~DrFQfeRiG 736 (764)
T KOG1148|consen 675 -SPVKVEVRLYEQLFKSENPADL-NEVFLSDINPDSLVVVKGALADKSISDAKVYDRFQFERIG 736 (764)
T ss_pred -CCeEeehhHHHHHhccCCccch-hHHHHHhcCccchhhhhhhhhhhhhcccchhhhHhhhhcc
Confidence 7899999999999999999985 45599999999999995 7999888889999999999995
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=1.6e-97 Score=801.35 Aligned_cols=361 Identities=47% Similarity=0.817 Sum_probs=346.4
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|++|++|||+|+||.++|++|||||+|||+..+||+||++|+||||||||||||||+|||||||||+||++||++
T Consensus 134 m~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~ 213 (522)
T TIGR00440 134 MRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRL 213 (522)
T ss_pred HhcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC-CCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRP-FPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~-~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.||+++|+| . .|.|++|+|||++|++||||++.++|++|+|+|||||||+||++||||||+|+||++|+..+
T Consensus 214 Y~~~~~~l~~------~~~P~~~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~l 287 (522)
T TIGR00440 214 YDWVLDNIHI------FPRPAQYEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRI 287 (522)
T ss_pred HHHHHHhcCc------cCCCceEEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHh
Confidence 9999999999 5 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEe
Q psy9414 160 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIE 238 (582)
Q Consensus 160 G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~ 238 (582)
|+|++++.++|..|+++||+.+++.++|+|||+||++|+|+|++... +..++|+ ||++ ++|+|.++|++.||||
T Consensus 288 G~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~d~~kl~i~~~~~~~-~~~~~p~----~p~~~~~g~r~v~~~~~i~Ie 362 (522)
T TIGR00440 288 GVTKQDNNIEVVRLESCIREDLNENAPRAMAVIDPVEVVIENLSDEY-ELATIPN----HPNTPEFGERQVPFTNEFYID 362 (522)
T ss_pred CCCCCCCceehhhHHHHHHHhhhhcCcccccccccceEEEecCCCCc-eEEeccC----CCCChhHeeEEEEecceeEEE
Confidence 99999999999999999999999999999999999999999997643 3678999 9999 9999999999999999
Q ss_pred cCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 239 RDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 239 ~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
++||++.++++|+||+| |++||||++++|+|+++++|++|.|++++|+|+++++++. .++++|+|++|||||+
T Consensus 363 ~~D~~~~~~~~f~~l~~------g~~vrL~~~~~i~~~~~~~d~~G~v~~~~~~~~~~~~~~~-~~~~kk~k~~IhWv~~ 435 (522)
T TIGR00440 363 RADFREEANKQYKRLVL------GKEVRLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGKE-PADGRKVKGVIHWVSA 435 (522)
T ss_pred HHHhhccccccccccCC------CCEEEeCCEEEEEEEEEEecCCCCEEEEEEEEccccccCC-ccccccCCcEEEeeec
Confidence 99999999999999999 9999999999999999999999999999999999887544 2345688899999998
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
.+++++++|+||+||++++|+. +++|++++||+|+.+..+++|+++..+..++++||||.|
T Consensus 436 ~~~~~~evr~yd~Lf~~~~p~~--~d~~~~~~np~s~~~~~~~~E~~~~~~~~~~~~QfeR~G 496 (522)
T TIGR00440 436 SSKYPTETRLYDRLFKVPNPGA--PDDFLSVINPESLVIKQGFMEHSLGDAVANKRFQFEREG 496 (522)
T ss_pred CCCeeEEEEecccccCCCCCCc--cccHhhhCCCCceEEEEEEEchhHhhCCCCCEEEEEEeE
Confidence 8899999999999999999997 589999999999999999999999999999999999994
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=2e-95 Score=783.96 Aligned_cols=341 Identities=28% Similarity=0.447 Sum_probs=321.7
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|++++|++|||+|+||.++|++|+|||+||+++++||||||+|++|||||||||||||+|||||||||+||++||++
T Consensus 140 m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~ 219 (523)
T PLN03233 140 MCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQ 219 (523)
T ss_pred HhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.||+++||| ..|.|+||+|||+.|++||||++++||++|.|+||||||||||+|||||||+|+||++|+..+|
T Consensus 220 q~~l~~aLg~------~~P~~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G 293 (523)
T PLN03233 220 FFWIQKALGL------RRPRIHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQG 293 (523)
T ss_pred HHHHHHHhCC------CCCeeeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeee--cceEEEEEccCCCce-EEEEccCCcCCCCcc-CCCceEEeecceEE
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVL--NPIKLIISNFLDNQE-IECTAPLFSRQHTQY-KEKLRYFPISKILW 236 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~--~p~~~~i~n~~~~~~-~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~ 236 (582)
+|++++.++|++||++||+.||+.|+|+|||+ +|++|+|+|+|.+.. +.+++|+ ||++ ++|+|+|+|+++||
T Consensus 294 ~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~~~pv~v~i~n~~~~~~~~~~~~p~----hP~~~~~G~r~v~~~~~iy 369 (523)
T PLN03233 294 ASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDKADHTALTVTNADEEADFAFSETDC----HPKDPGFGKRAMRICDEVL 369 (523)
T ss_pred CCCCCceecHHHHHHHHHHHhcccCCceEEEccCCcEEEEecCCCCccceecccccc----CCCCCCCceEEEEECCcEE
Confidence 99999999999999999999999999999998 599999999987542 2348999 9999 99999999999999
Q ss_pred EecCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEee
Q psy9414 237 IERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWI 316 (582)
Q Consensus 237 i~~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv 316 (582)
||++||+ +|.+ |++||||++++|+|+++++|.+|+++ ++ ++.+|+|++||||
T Consensus 370 Ie~~D~~--------~l~~------g~~vrL~~~~~i~~~~~~~d~~~~~~-------~~-------~d~~~~k~~I~Wv 421 (523)
T PLN03233 370 LEKADTE--------DIQL------GEDIVLLRWGVIEISKIDGDLEGHFI-------PD-------GDFKAAKKKISWI 421 (523)
T ss_pred EEHhHHh--------hcCC------CCEEEeCceeeEEEEEEEecCceEEe-------eC-------CCCcccccEEEEc
Confidence 9999997 5888 99999999999999999988776543 21 1234888899999
Q ss_pred cC-CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 317 SK-SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 317 ~~-~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
|. .+++++++++||+||++++|++ +++|+++|||+|+.+..+++||++..++.++.|||||.|
T Consensus 422 ~~~~~~~~~~~~~yd~L~~~~~~~~--~~~~~~~~n~~S~~~~~~~~e~~~~~~~~~~~~QfeR~G 485 (523)
T PLN03233 422 ADVSDNIPVVLSEFDNLIIKEKLEE--DDKFEDFINPDTLAETDVIGDAGLKTLKEHDIIQLERRG 485 (523)
T ss_pred CCCCCccceEEEecccccCCCCCCc--ccChhhhcCCCceEEEeEEEchhHhhCCCCCeEEEEEee
Confidence 84 6789999999999999999986 689999999999999999999999999999999999994
No 8
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-94 Score=779.80 Aligned_cols=348 Identities=28% Similarity=0.451 Sum_probs=329.4
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|.+++|++|||+|+||.++|++|||||+||++..+|||||++|++|||||||||||||+|||||||||+||++|||+
T Consensus 182 m~~g~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~ 261 (601)
T PTZ00402 182 MKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQ 261 (601)
T ss_pred ccccccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.||+++||| .+|.|+||++||++|++||||++.++|++|+|.||||||||||+|||||||+|+||++|+..+|
T Consensus 262 q~~L~~aLg~------~~P~~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~G 335 (601)
T PTZ00402 262 YYWFCDALGI------RKPIVEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQG 335 (601)
T ss_pred HHHHHHHhCC------CCceEEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|++++.|||++|+++||++|++.|+|+|||++|++|+|+|++.+..+.+++|+ ||++ ++|+|+++|+++||||+
T Consensus 336 vsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~~p~kv~i~~~~~~~~~~~~~p~----hP~~~~~G~r~i~~~~~iyIe~ 411 (601)
T PTZ00402 336 MSKTVNFMEWSKLWYFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLEACEKLL----HKKVPDMGEKTYYKSDVIFLDA 411 (601)
T ss_pred CCCCCcccCHHHHHHHHHHHHhhcCCceEEEcCCCEEEEEECCCCcceEeeccC----CCCCcccCceEEEECCeEEEEh
Confidence 999999999999999999999999999999999999999999876667889999 9999 99999999999999999
Q ss_pred CcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEe-cCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKK-NKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 240 ~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~-d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
+||+ +|.| |++||||+++++.+.++.+ |++|.|+++++.++++ ++.+|+|++|||||+
T Consensus 412 ~D~~--------~l~~------g~~vrL~~~gn~~i~~~~~~~~~g~v~~~~~~~~~~-------~~~kk~k~~IhWv~~ 470 (601)
T PTZ00402 412 EDVA--------LLKE------GDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLE-------GDVKKTKFKLTWVPE 470 (601)
T ss_pred hhHh--------hcCC------CCEEEEeccCCEEEEEEEeeCCCCcEEEEEEEECCC-------CCCCcCCCeEEEecC
Confidence 9997 6888 9999999877777666653 5789999999998853 234588899999998
Q ss_pred C-CCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 S-HALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~-~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
. +.+++++|+||+||++++|++ +++|+++|||+|+.+..+++||++..++.+++|||||.|
T Consensus 471 ~~~~~~~~~r~yd~Lf~~~~p~~--~~~~~~~ln~~s~~~~~~~~E~~~~~~~~~~~~QfeR~G 532 (601)
T PTZ00402 471 SPKAEVMELNEYDHLLTKKKPDP--EESIDDIIAPVTKYTQEVYGEEALSVLKKGDIIQLERRG 532 (601)
T ss_pred CCCcceEEEEecccccCCCCCCc--cccHHHhcCCCChheEEEEEchhHhhCCCCCEEeEEEeE
Confidence 5 778999999999999999987 579999999999999999999999999999999999993
No 9
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=1.4e-92 Score=796.61 Aligned_cols=347 Identities=27% Similarity=0.417 Sum_probs=332.5
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|++++|++|||+|+||.++|++|||||+||+++.+||||||+|++|||||||||||||+|||||||||+||++||++
T Consensus 342 m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~ 421 (722)
T PLN02907 342 MIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQ 421 (722)
T ss_pred HhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.|||++||| +.|.++||+|||++|++||||+|.+||++|+|.|||||||||++|||||||+|+||++|+..+|
T Consensus 422 q~~l~~~lg~------~~p~~~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g 495 (722)
T PLN02907 422 YYRILEDMGL------RKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQG 495 (722)
T ss_pred HHHHHHHcCC------CCCeeEEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecc--eEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEE
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNP--IKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWI 237 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p--~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i 237 (582)
+|++++.|||++|+++||++||+.++|+|||++| ++|+|+|+++. .+.+++|+ ||+| ++|+|+++|+++|||
T Consensus 496 ~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~~v~~~i~~~~~~-~~~~~~p~----hp~~~~~g~r~~~~~~~i~i 570 (722)
T PLN02907 496 ASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLTLTDGPET-PFVRIIPR----HKKYEGAGKKATTFTNRIWL 570 (722)
T ss_pred CCcCCccccHHHHHHHHHHHhccCCCceeEEecCCEEEEEEcCCCCC-ceeeeccC----CCCCCccceEEEEECCcEEE
Confidence 9999999999999999999999999999999999 88899998863 46789999 9999 999999999999999
Q ss_pred ecCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeec
Q psy9414 238 ERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWIS 317 (582)
Q Consensus 238 ~~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~ 317 (582)
|++||+ +|.+ |++||||+++++.|+++.+|++|.|++++|+|+++ ++++|+|++|||||
T Consensus 571 ~~~D~~--------~l~~------g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~-------~~~~k~k~~i~Wv~ 629 (722)
T PLN02907 571 DYADAE--------AISE------GEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLE-------GSVKTTKLKLTWLP 629 (722)
T ss_pred EcchHh--------hcCC------CCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccc-------cCCCcCCCeEEEec
Confidence 999997 4777 99999999999999999999999999999999864 23458888999999
Q ss_pred CC-CCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 318 KS-HALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 318 ~~-~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
+. +.+++++++||+||++++|++ +++|+++|||+|+.+..+++||++...+.++.+||||.|
T Consensus 630 ~~~~~~~~~~~~~d~l~~~~~~~~--~~~~~~~~n~~s~~~~~~~~e~~~~~~~~~~~~QfeR~G 692 (722)
T PLN02907 630 DTNELVPLSLVEFDYLITKKKLEE--DDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKG 692 (722)
T ss_pred CCCCceEEEEEccccccccCCCcc--ccchhHhcCCCceeEEEEEEcHhHhhCCCCCeEEEEEeE
Confidence 86 589999999999999999987 589999999999999999999999999999999999994
No 10
>KOG1147|consensus
Probab=100.00 E-value=3.8e-88 Score=701.00 Aligned_cols=346 Identities=31% Similarity=0.464 Sum_probs=326.2
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|..|...+-.+|||+||||+++|.+||||||||++..||||||+||+|||||||||+|.|++|||||+||+.|+.++.++
T Consensus 329 M~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Q 408 (712)
T KOG1147|consen 329 MKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQ 408 (712)
T ss_pred HhccchhhhhhheeeeecccCCCccccCCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|+|++++||+ ++|++|+|+|||+..|+||||||.|+|++|+|+||||||+||++|.+|||++.|+|++|+..+|
T Consensus 409 yyw~i~al~L------Rkp~iwefsRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG 482 (712)
T KOG1147|consen 409 YYWFIDALGL------RKPHIWEFSRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQG 482 (712)
T ss_pred HHHHHHHhcC------CccceeehhhhhhHhhhhhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhC
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEE--EEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEE
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLI--ISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWI 237 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~--i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i 237 (582)
.|++...++|+++|++|++.|||+||||+||..+..|. |+|.|... ..-..|. |||| ++|++.+.|++.|||
T Consensus 483 ~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~~~~V~v~i~~~~~~~-~~~~~Pk----HkKn~~lG~K~v~~~~~I~l 557 (712)
T KOG1147|consen 483 PSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVKEDRVEVTITNGPQEE-YIEVSPK----HKKNPELGEKKVIYSKKILL 557 (712)
T ss_pred CccceeeeehHhhhhhcccccCCCCccceeeccCceEEEecCCCCCcc-hhhcccc----CCCCcccCccceeeccceeE
Confidence 99999999999999999999999999999999765554 44555432 2335789 9999 999999999999999
Q ss_pred ecCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeec
Q psy9414 238 ERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWIS 317 (582)
Q Consensus 238 ~~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~ 317 (582)
|++|++. |.. |++|+||+|+|+.++++.+|.+|+|+.+.+++. ++|++||+|.+++|++
T Consensus 558 e~~Da~~--------l~~------gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~Ln-------ldgDfKkTk~KlTWLa 616 (712)
T KOG1147|consen 558 EQADAEA--------LKE------GEEVTLMNWGNAIIKKINKDASGKVTSLSAKLN-------LDGDFKKTKLKLTWLA 616 (712)
T ss_pred eccchhh--------hcC------CcEEEEEeccceeeEEeeccCCceEEEEEEEec-------cCCccccccceeEEec
Confidence 9999973 445 999999999999999999999999999999986 5677889999999999
Q ss_pred CC-CCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEcccccccccccccccccc
Q psy9414 318 KS-HALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 380 (582)
Q Consensus 318 ~~-~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~ 380 (582)
.. ..+|+++..||+|++++..++ ++||.+++||+|.....++.++++.+++.++.+|+||.
T Consensus 617 dt~~~vpv~lv~fd~lItK~~le~--dEd~k~f~n~~t~~~~~~~gd~~ikn~KkGDIIQ~eRk 678 (712)
T KOG1147|consen 617 DTNDSVPVDLVDFDHLITKDKLEK--DEDFKDFVNPNTVKETLMLGDPAIKNLKKGDIIQLERK 678 (712)
T ss_pred cCCCccceEEeechhhcchhhccc--chhHHHhcCCCccccchhccChhhhccccCceEEEecc
Confidence 85 789999999999999999887 69999999999999999999999999999999999999
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-81 Score=680.21 Aligned_cols=315 Identities=29% Similarity=0.469 Sum_probs=294.9
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|++|++|||+|+||.++|++|||||+||+...+||++|++|+|||||||||+||||+|||||||||+||++||++
T Consensus 232 m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~ 311 (567)
T PRK04156 232 MLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEK 311 (567)
T ss_pred hhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.|||++||| ..|.|+||++|+++|++||||++.++|++|.|+||||||++||++||++||+|+||++|+..+|
T Consensus 312 Q~~l~~~Lg~------~~P~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG 385 (567)
T PRK04156 312 QRYIYDYFGW------EYPETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVG 385 (567)
T ss_pred HHHHHHHcCC------CCceEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 9999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|++++.|+|++|+++||++||+.|+|+|||++|++|+|+|.+. +.+++|+ ||++ ++|+|+++|++.||||+
T Consensus 386 ~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~pv~v~i~~~~~---~~~~~p~----hP~~~~~G~r~v~~~~~i~i~~ 458 (567)
T PRK04156 386 VKETDATISWENLYAINRKLIDPIANRYFFVRDPVELEIEGAEP---LEAKIPL----HPDRPERGEREIPVGGKVYVSS 458 (567)
T ss_pred CCCCCcccCHHHHHHHHHHHHhccCCceEEECCceEEEEcCCCc---eEEEcCC----CCCCCCCceEEEEECCeEEEEH
Confidence 99999999999999999999999999999999999999999753 5789999 9999 99999999999999999
Q ss_pred CcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcc-eEEEeecC
Q psy9414 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVK-GNIHWISK 318 (582)
Q Consensus 240 ~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k-~~I~Wv~~ 318 (582)
+||.+ . |++||||++|||+|+++. +++|+|++++.+ +++ |+| ++|||||+
T Consensus 459 ~D~~~----------~------g~~vrL~~~~nv~~~~~~--------~~~~~~~~~~~~---~~~--k~~~~~i~Wv~~ 509 (567)
T PRK04156 459 DDLEA----------E------GKMVRLMDLFNVEITGVS--------VDKARYHSDDLE---EAR--KNKAPIIQWVPE 509 (567)
T ss_pred HHHhh----------c------CCEEEeeeEEEEEEEEEE--------EEEEEEcCCccc---ccc--ccCCCEEEEccC
Confidence 99974 1 899999999999998874 578999988763 233 777 49999999
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
.++++++|+. |+. .+..+++||++.....++.+||||.|
T Consensus 510 ~~~v~~~v~~---------~~~---------------~~~~g~~E~~~~~~~~~~~~QfeR~G 548 (567)
T PRK04156 510 DESVPVRVLK---------PDG---------------GDIEGLAEPDVADLEVDDIVQFERFG 548 (567)
T ss_pred CCCeeEEEEC---------CCc---------------eEEEEEEchhHhhCCCCCEEEEEEeE
Confidence 8899999995 221 35679999999999999999999994
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=3.8e-79 Score=664.74 Aligned_cols=318 Identities=28% Similarity=0.400 Sum_probs=283.3
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|++++|++|||+|+||.++|++|||||+||++.++||||||+|++|||||||||||||+|||||||||+||++||++
T Consensus 222 m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~r 301 (560)
T TIGR00463 222 MLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERK 301 (560)
T ss_pred HhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCc-cccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~-~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.+++++||| ..|.++||+++.+.+. +||||..+..+.+|.|+||||||++||++||||||+|+||++|+..+
T Consensus 302 q~yl~~~lg~------~~P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~ 375 (560)
T TIGR00463 302 QQYIYMYFGW------ELPEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSI 375 (560)
T ss_pred HHHHHHHcCC------CCCeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 9999999999 8999999998877643 66666544444458999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEe
Q psy9414 160 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIE 238 (582)
Q Consensus 160 G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~ 238 (582)
|+|++++.++|++||++||++||+.|+|+|||++|++|+|+|+++. .++++|+ ||++ ++|+|+++|++.||||
T Consensus 376 G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~p~~v~i~~~~~~--~~~~~p~----hp~~~~~G~r~v~~~~~i~i~ 449 (560)
T TIGR00463 376 GVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWNPVKIEIEGAPEP--KIVERPL----HPDNPEVGERKLIYYGEIYVD 449 (560)
T ss_pred CCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcCCcEEEEecCCCC--eeEEccC----CCCCCCCceEEEEECCeEEEE
Confidence 9999999999999999999999999999999999999999998743 3568999 9999 9999999999999999
Q ss_pred cCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 239 RDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 239 ~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
++||.+ .+ |++||||+++||+|+++.++ |.+ +...+ .++.++|++++|||||+
T Consensus 450 ~~D~~~---------~~------g~~vrL~~~~ni~~~~~~~~--~~~------~~~~~----~~~~~~~~~~~i~Wv~~ 502 (560)
T TIGR00463 450 KDDLEV---------IE------GEEVRLMDWGNVIITKKNDD--GSM------YHSLN----LEGARKKGKHIIHWLPD 502 (560)
T ss_pred HHHHhh---------CC------CCEEEEeecccEEEEEEeCC--CcE------Eeccc----cccccccCCCEEEECcC
Confidence 999973 46 99999999999999987543 432 22222 23345578889999998
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
.++++++++.||+|++. +++|++....+.++.+||||+|
T Consensus 503 ~~~v~~~~~~~d~l~~~------------------------~~~E~~~~~~~~~~~vQfeR~G 541 (560)
T TIGR00463 503 KDAVKVKVIMPDHLITE------------------------GRLEEDASFEEVGDIIQFERFG 541 (560)
T ss_pred CCceEEEEEcCcccccc------------------------CccCcchhhcCCCCEEEEEEeE
Confidence 88999999999998654 3455555556789999999994
No 13
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-46 Score=400.43 Aligned_cols=310 Identities=28% Similarity=0.403 Sum_probs=248.9
Q ss_pred CCceEEEEEEeccCCCCCCCCcEEEEecCCC-ccc-cCCeeeeecccccccccccccCCCcEEecCcccccChHHHHHHH
Q psy9414 8 DGAHVLRVKINMKSKNINMRDPIIYRIRHVN-HYR-TNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWIL 85 (582)
Q Consensus 8 ~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~-H~~-~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~ 85 (582)
+|++|+|+|+|+.++|+.|+|+|.+||...+ |++ ++.||.+|||||||||||||+|||||||||+||++|||+|.|||
T Consensus 148 ~~~~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~ 227 (472)
T COG0008 148 GGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLY 227 (472)
T ss_pred CCCeEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHH
Confidence 8999999999999999999999999999988 999 99999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCceeEeecccC-CCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCC
Q psy9414 86 NKIDKTNFIKRPFPKQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 164 (582)
Q Consensus 86 ~~l~~~~~~~~~~p~~~~~~~l~~-~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~ 164 (582)
++||| ..|.|+||++|+. +|.|||||++...+....+.||+||+++|+.+|+++|++|+++..|+...|++..
T Consensus 228 ~~lg~------~~P~~~H~~li~~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~f 301 (472)
T COG0008 228 EALGW------PPPVYAHLPLLLNEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWF 301 (472)
T ss_pred HHcCC------CCCcEEEeeeeecCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhh
Confidence 99999 9999999998755 4569999999777777789999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCC-ceEEEEccCCcCCCCccCCCceEEeecc--eEEEecCc
Q psy9414 165 DSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDN-QEIECTAPLFSRQHTQYKEKLRYFPISK--ILWIERDD 241 (582)
Q Consensus 165 ~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~-~~~~~~~p~~~~~hp~~~~G~r~i~~~~--~i~i~~~D 241 (582)
+..+.++.+..+|++.|+.+++|+|++ +|+++.+++++.- ......+|+ +| ++|.|.+++.+ .+||++.|
T Consensus 302 d~~~~~~~~~~fd~~kL~~~n~ry~~~-~p~e~~~~~l~~~~~~~~~~~~~----~~--e~~~~~~~l~~~~~~~i~~~~ 374 (472)
T COG0008 302 DLTIVSKSPAAFDRKKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPL----NP--EMGERVVPLTKETLIEIERLD 374 (472)
T ss_pred hhhhhhcccccccHHHhHhhhHHHHHh-CCHHHHHHhhhhhhhhhcccCCC----CH--HHHhhhhhhccchHHHHhHHH
Confidence 999999999999999999999999999 9999999998641 112233333 22 88999999999 89999999
Q ss_pred ccccccccccccCCCCCCCCCceEEEeecEEEEEeeEE-ecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecCCC
Q psy9414 242 FMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFK-KNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSH 320 (582)
Q Consensus 242 ~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~-~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~~~ 320 (582)
+.. +.. +++++|+.+.++...++. .+..+.... .+.+..++|||++..
T Consensus 375 ~~~--------~~~------~~~~~~~~l~~~~~~~~l~~~~~~l~~~-----------------~~~~~~i~~wv~~~~ 423 (472)
T COG0008 375 FFF--------FED------KEEVRLKRLANVIVAEVLEKDAEGLITS-----------------DWTKENIIHWVKAVA 423 (472)
T ss_pred HHH--------hcc------hHHHHHHhhcchHHHHHHHHHHHhhhhc-----------------cccHHHHHHHHHHHH
Confidence 864 223 467888776665322221 222221110 012334899998532
Q ss_pred CeeeEEEeccccccCCCCCccCCCcccccccCCceEEEE-EEEcccccccccc--ccccccccc
Q psy9414 321 ALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS-AYLEPNLKLIFPK--KHAQFEQNL 381 (582)
Q Consensus 321 ~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~-~~vep~l~~~~~~--d~~QfeR~g 381 (582)
.++....| .+++-+..++. ++.+|++...... ..+||+|.+
T Consensus 424 ----------~~~~vk~~----------~~~~plr~a~tG~~~~p~l~~~~~~~g~~~q~~Rl~ 467 (472)
T COG0008 424 ----------RLFGVKGP----------KLFPPLRVALTGGYVEPELADTIELLGKEVQFERLG 467 (472)
T ss_pred ----------HHhCCCCc----------ccchhhHHHhcCCccCCCHHHHHHhhchHHHHHHHH
Confidence 33444433 23444455554 7888887554333 448999884
No 14
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=5e-43 Score=344.33 Aligned_cols=144 Identities=60% Similarity=1.041 Sum_probs=142.0
Q ss_pred CccccCCeeeeecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecccCCCcccccc
Q psy9414 38 NHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKR 117 (582)
Q Consensus 38 ~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr 117 (582)
+|+++|++|++|||||||+||||++|||||||||+||++||++|.||+++||| ..|.+++|+|||.+|+|||||
T Consensus 95 ~~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~------~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 95 VHHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRL------YRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred cCCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCC------CCCceeEEEEECCCCCCccCc
Confidence 48899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhhccCCc
Q psy9414 118 KLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 118 ~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
++..+|++|.+.||||||++|+.+||++|++||||++|+..+|+|++++.|+|++|+++||++||+.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 15
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=6e-42 Score=338.00 Aligned_cols=143 Identities=31% Similarity=0.524 Sum_probs=141.3
Q ss_pred ccccCCeeeeecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccc
Q psy9414 39 HYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRK 118 (582)
Q Consensus 39 H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~ 118 (582)
|+++|++|++|||||||++|||++|||||||||+||++||++|.||+++||| ..|.|+|+++|+..|+|||||+
T Consensus 98 ~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~------~~P~~~H~pll~~~~~kLSKR~ 171 (240)
T cd09287 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGW------EYPETIHWGRLKIEGGKLSTSK 171 (240)
T ss_pred CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCC------CCCcEEeeeeecCCCCeecccc
Confidence 8999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhhccCCc
Q psy9414 119 LLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 119 ~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
+.++|++|.|.||||||++|+++||++||+|+||++|+..+|+|.+++.++|++|+++||++||+.|+|
T Consensus 172 ~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 172 IRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred ccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987
No 16
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=100.00 E-value=6.7e-38 Score=298.12 Aligned_cols=167 Identities=43% Similarity=0.672 Sum_probs=136.3
Q ss_pred CCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEecCcccccccccccccCCCCCCCCCc
Q psy9414 185 APRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGN 263 (582)
Q Consensus 185 ~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~~D~~~~~~~~f~~l~~~~~~~~g~ 263 (582)
|+|+|||++|++|+|+|+|++..+++++|+ ||++ ++|+|++.|+++||||++|| +||++ |+
T Consensus 1 A~R~maV~dPv~v~I~n~~~~~~~~~~~p~----hPk~~~~G~r~v~~~~~i~Ie~~D~--------~~l~~------g~ 62 (174)
T PF03950_consen 1 APRYMAVLDPVKVKITNFPEDEPEEIEVPL----HPKNPELGTREVPFSKTIYIERSDF--------FRLAP------GK 62 (174)
T ss_dssp SEEE-EECSEEEEEECT--SSSEEEEEEES----STT-GGG-EEEEEECSEEEEEGGG----------SEET------TC
T ss_pred CCcEEEECCCEEEEEEcCCCCCEEEEEecC----CCCCccCceEEEEECceEEEEhhHh--------hhccC------CC
Confidence 799999999999999999987788999999 9999 99999999999999999995 47999 99
Q ss_pred eEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecCCCCeeeEEEeccccccCCCCCccCC
Q psy9414 264 RVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNN 343 (582)
Q Consensus 264 ~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~~~~i~~~vr~Yd~L~~~~~p~~~~~ 343 (582)
+||||++++|+|+++++|.+|.|++++|+|++++.++. +|+|++|||||+.+++++++|+||+||+.++ +.
T Consensus 63 ~v~L~~~~ni~i~~~~~~~~g~v~~l~~~~~~~~~~~~-----~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~-~~--- 133 (174)
T PF03950_consen 63 EVRLMYWGNIKITSIEKDEDGKVTELKARYDPEDKEGA-----KKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN-DE--- 133 (174)
T ss_dssp EEEETTTEEEEEEEEEE-TTSSEEEEEEEEECTTHHHH-----HHHT-EE-EEEGCC-EEEEEEEE--SBSSS--GG---
T ss_pred EEEEeccceEEEEEeeecCCCCEEEEEEEEecccccCC-----cccCcEEEEccCCCCeeeEEEEehhhcCCCc-cc---
Confidence 99999999999999999999999999999998654321 3788899999999999999999999999876 42
Q ss_pred CcccccccCCceEE-EEEEEccccccccccccccccccc
Q psy9414 344 KDFKLLINPNSKKV-ISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 344 ~d~~~~iNp~Sl~v-~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
+++ +||+|+.+ ..+++|+++.+++.++.+||||.|
T Consensus 134 -~~~--inp~s~~~~~~~~~E~~~~~~k~g~~vQfER~G 169 (174)
T PF03950_consen 134 -DDL--INPNSLKVVKNGLVEPALKNLKPGDIVQFERRG 169 (174)
T ss_dssp -TGG--B-TTSEEEEEEEEE-GGGGGS-TT-EEEETTTE
T ss_pred -cce--ECCCCcEEccCEEEchhHHhCCCCCEEeEEEee
Confidence 343 99999999 599999999999999999999995
No 17
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.5e-34 Score=301.66 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=134.3
Q ss_pred CCCceEEEEEEec-------------cCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcc
Q psy9414 7 KDGAHVLRVKINM-------------KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLE 73 (582)
Q Consensus 7 ~~g~~~~r~k~d~-------------~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e 73 (582)
.++++|+|+|++. ..++..++|||++|.++ +||||||+|||||+|||||||||+|
T Consensus 132 ~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg------------~PtY~fA~vVDD~~mgIThViRG~d 199 (433)
T PRK12410 132 CNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRADK------------TPTYNFACAVDDMLYDISLIIRGED 199 (433)
T ss_pred cCCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcCCC------------CccccccchhchhhcCCCEEEechh
Confidence 3678999999963 45677888888888876 6999999999999999999999999
Q ss_pred cccChHHHHHHHHHcCCCCCCCCCC-CceeEee-cccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHH
Q psy9414 74 FQDHRPFYEWILNKIDKTNFIKRPF-PKQYEFS-RLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPES 151 (582)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~-p~~~~~~-~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~a 151 (582)
|++|||+|.+||++||| .+ |.|.|++ +++.+|+|||||+. .++|.+||++||+|+|
T Consensus 200 ~l~~tp~Qi~Ly~aLg~------~~pp~f~Hlpli~~~~g~KLSKR~~----------------~~~v~~~r~~G~~PeA 257 (433)
T PRK12410 200 HVSNTPKQILIREALGY------NKEITYAHLPIILNEEGKKMSKRDN----------------ASSVKWLLEQGFLPSA 257 (433)
T ss_pred hhhCcHHHHHHHHHcCC------CCCCeEEEeeeeeCCCCCeeecccC----------------hhhHHHHHHCCCCHHH
Confidence 99999999999999999 75 5999999 78999999999993 5689999999999999
Q ss_pred HHHHHHHhcc---------------------cCCCCcccHHHHHHHHHHhhhccCCce
Q psy9414 152 IKLFCKRIGV---------------------SKSDSWINIEILEQALRDDLDIKAPRI 188 (582)
Q Consensus 152 i~~~~~~~G~---------------------s~~~~~~~~~~l~~~~~~~l~~~~~r~ 188 (582)
|.||+..+|+ |++++.||+++|+|+|+++|+..+...
T Consensus 258 i~n~l~~lG~~~~~e~~~~~eli~~F~~~~i~~~~~~~d~~kL~~~N~~~i~~~~~~~ 315 (433)
T PRK12410 258 IANYLILLGNKTPKEIFTLEEAIEWFDIEKISKSPAKFDLKKLRFINREHLKMLDDER 315 (433)
T ss_pred HHHHHHHhCCCCcccccCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999997 678999999999999999999887664
No 18
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.98 E-value=2.3e-32 Score=292.33 Aligned_cols=144 Identities=20% Similarity=0.190 Sum_probs=128.3
Q ss_pred CceEEEEEE-------------eccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccc
Q psy9414 9 GAHVLRVKI-------------NMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQ 75 (582)
Q Consensus 9 g~~~~r~k~-------------d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~ 75 (582)
...++|+|+ ++.++|..++||||+|+++ +||||||+|||||+|||||||||+||+
T Consensus 140 ~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg------------~PtY~fA~vVDD~~m~ITHViRG~d~l 207 (445)
T PRK12558 140 RKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRADG------------SYLYTLPSVVDDIDMGITHIIRGEDHV 207 (445)
T ss_pred CCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEecCC------------CccccccceeccccCCCCEEEechhhh
Confidence 446888875 4667888999999999997 499999999999999999999999999
Q ss_pred cChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHH
Q psy9414 76 DHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 154 (582)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~ 154 (582)
+|||+|.|||++||| ..|.|.|++.+ +.+|+|||||+ ..+||.+||++||+|+||.|
T Consensus 208 ~~t~~q~~l~~alg~------~~P~f~H~pli~~~~g~KLSKR~----------------g~~sv~~~r~~G~~Peai~n 265 (445)
T PRK12558 208 TNTAVQIQIFEALGA------KPPVFAHLSLLTGADGKGLSKRL----------------GGLSIRSLREDGIEPMAIAS 265 (445)
T ss_pred hCCHHHHHHHHHhCC------CCCeEEEcccccCCCcccccccC----------------CCcCHHHHHHCCCCHHHHHH
Confidence 999999999999999 99999999954 66799999999 45799999999999999999
Q ss_pred HHHHhccc----------------------CCCCcccHHHHHHHHHHhhhccCC
Q psy9414 155 FCKRIGVS----------------------KSDSWINIEILEQALRDDLDIKAP 186 (582)
Q Consensus 155 ~~~~~G~s----------------------~~~~~~~~~~l~~~~~~~l~~~~~ 186 (582)
|+..+||| ++++.||.++|.|+|+++|...+.
T Consensus 266 ~la~lG~s~~~~e~~~~~eli~~F~l~~~~~~~~~fd~~KL~w~N~~~i~~~~~ 319 (445)
T PRK12558 266 LLARLGTSDPVEPYTSMEELAESFDLSSFSRAPAKFDPEDLERLNARLLHALPF 319 (445)
T ss_pred HHHHHcCCCCCcccCCHHHHHHhCCHhhCCCccccCCHHHHHHHHHHHHHhCCH
Confidence 99999975 567788899999999999876543
No 19
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.97 E-value=1.2e-34 Score=300.60 Aligned_cols=174 Identities=28% Similarity=0.275 Sum_probs=147.1
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCC---ccccCCeeeeecccccccccccccCCCcEEecCcccccC
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVN---HYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDH 77 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~---H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~ 77 (582)
|++|.++++++++|+|+++.++ ..++|+|.+|+...+ |+.++.+|-++||||||+|||||+|||||||||+||++|
T Consensus 134 ~~~~~~~~~~~~iRlk~~~~~~-~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~ 212 (314)
T PF00749_consen 134 MRAGLAKGGPAVIRLKVPMESP-IAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSS 212 (314)
T ss_dssp HHHHHHTTTSEEEEE-SSSTCC-EEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTC
T ss_pred HHhhhccCCceeeeeecccccc-cccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccc
Confidence 4457788999999999999988 999999999998766 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCceeEee-cccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHH
Q psy9414 78 RPFYEWILNKIDKTNFIKRPFPKQYEFS-RLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFC 156 (582)
Q Consensus 78 ~~~~~~l~~~l~~~~~~~~~~p~~~~~~-~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~ 156 (582)
|++|.|||++||| ..|.|.|.+ +++.+|+|||||++..+|+.+.+.+|+||+.+++.+|+++|++|+++++|+
T Consensus 213 t~~Q~~L~~~Lg~------~~P~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~ 286 (314)
T PF00749_consen 213 TPRQILLYEALGW------PPPPYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARLGWSPEAIREFF 286 (314)
T ss_dssp HHHHHHHHHHCTS------SS-EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHH
T ss_pred cHHHHHHHHHhCC------CCcceEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHhcCCcchhhhhc
Confidence 9999999999999 878888877 889999999999999998889999999999999999999999999999999
Q ss_pred HHhcccCCC-CcccHHHHHHHHHHhh
Q psy9414 157 KRIGVSKSD-SWINIEILEQALRDDL 181 (582)
Q Consensus 157 ~~~G~s~~~-~~~~~~~l~~~~~~~l 181 (582)
...|++++. ....++.++.+|++.|
T Consensus 287 ~~~~~~~~f~~~~~~~~~~~fd~~kL 312 (314)
T PF00749_consen 287 SLDELIKQFDLSKISKSPAVFDRKKL 312 (314)
T ss_dssp HHHHHHHHC-GGGBHSSHEEHHHHHH
T ss_pred CHHHHHHHhhHhhccCchHHhCHHHh
Confidence 999875433 2233333444444433
No 20
>PLN02627 glutamyl-tRNA synthetase
Probab=99.97 E-value=8.2e-32 Score=291.36 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=124.1
Q ss_pred EEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCC
Q psy9414 15 VKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFI 94 (582)
Q Consensus 15 ~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~ 94 (582)
+++++..++..++||||+|+++ |||||||+|||||+|||||||||+||++|||+|.|||++|||
T Consensus 212 i~G~i~~~~~~~~D~Vi~R~DG------------~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg~---- 275 (535)
T PLN02627 212 IRGEVSWNTDTLGDFVLLRSNG------------QPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGF---- 275 (535)
T ss_pred eeeeeeeccccCCCeEEEecCC------------CccccccceecccccCCcEEEechhhhcChHHHHHHHHHcCC----
Confidence 4446778889999999999997 699999999999999999999999999999999999999999
Q ss_pred CCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc-----------
Q psy9414 95 KRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS----------- 162 (582)
Q Consensus 95 ~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s----------- 162 (582)
..|.|+|++. ++.+|+|||||+ ...+|..||++||+|+||.||+.++|||
T Consensus 276 --~~P~f~Hlpli~~~~g~KLSKR~----------------~~~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~ 337 (535)
T PLN02627 276 --PMPRFAHVSLILAPDRSKLSKRH----------------GATSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLE 337 (535)
T ss_pred --CCCeEEEccceeCCCCCcccccc----------------CCccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHH
Confidence 9999999996 577899999999 4567899999999999999999999964
Q ss_pred ------------CCCCcccHHHHHHHHHHhhhccC
Q psy9414 163 ------------KSDSWINIEILEQALRDDLDIKA 185 (582)
Q Consensus 163 ------------~~~~~~~~~~l~~~~~~~l~~~~ 185 (582)
++++.||.++|.|+|+++|...+
T Consensus 338 eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~ 372 (535)
T PLN02627 338 ELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLP 372 (535)
T ss_pred HHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCC
Confidence 56778999999999999988664
No 21
>KOG1149|consensus
Probab=99.96 E-value=6.4e-30 Score=262.09 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=123.7
Q ss_pred CCceEEEEEEeccC------------CC--CCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcc
Q psy9414 8 DGAHVLRVKINMKS------------KN--INMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLE 73 (582)
Q Consensus 8 ~g~~~~r~k~d~~~------------~n--~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e 73 (582)
+=.+|+|+|++-.+ -| .+..|||+.++++ +||||||++||||+|||||||||+|
T Consensus 179 g~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDg------------fPTYHfAnVVDDh~M~IsHViRGeE 246 (524)
T KOG1149|consen 179 GTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSDG------------FPTYHFANVVDDHLMGISHVIRGEE 246 (524)
T ss_pred CCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcEEEecCC------------Ccceeeeeeecchhcchhheeecch
Confidence 44689999986321 11 1256888888886 7999999999999999999999999
Q ss_pred cccChHHHHHHHHHcCCCCCCCCCCCceeEee-cccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHH
Q psy9414 74 FQDHRPFYEWILNKIDKTNFIKRPFPKQYEFS-RLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESI 152 (582)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~-~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai 152 (582)
|+.||.+|..||+|||| .+|.+.|.+ .+|.+|+|||||+. ...|+.|+++||.|+|+
T Consensus 247 WlpST~KH~lLYkAfgW------~pPkFaHlpLl~n~d~sKLSKRqg----------------D~~vs~~~e~G~LPeal 304 (524)
T KOG1149|consen 247 WLPSTLKHILLYKAFGW------QPPKFAHLPLLLNPDGSKLSKRQG----------------DASVSHYREQGYLPEAL 304 (524)
T ss_pred hccccHHHHHHHHHhCC------CCCceeeeeeeecCCcchhhhhcC----------------cchHHHHHHcCCChHHH
Confidence 99999999999999999 999999999 57889999999995 44578899999999999
Q ss_pred HHHHHHhcc-----------------------cCCCCcccHHHHHHHHHHhhhc
Q psy9414 153 KLFCKRIGV-----------------------SKSDSWINIEILEQALRDDLDI 183 (582)
Q Consensus 153 ~~~~~~~G~-----------------------s~~~~~~~~~~l~~~~~~~l~~ 183 (582)
.||+..+|| +++++.+|.++|+++||.+|..
T Consensus 305 lN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ltk~~a~ld~ekL~~~Nr~~lqr 358 (524)
T KOG1149|consen 305 LNYIALLGWGFRTENEFFSLEELIEQFSIERLTKSNAILDSEKLRFLNRLHLQR 358 (524)
T ss_pred HHHHHHcCCCcccccccccHHHHHHHhchhhhcccccccCHHHHHHHHHHHHhh
Confidence 999999995 4688899999999999999943
No 22
>PRK06991 ferredoxin; Provisional
Probab=99.96 E-value=1.7e-29 Score=254.63 Aligned_cols=200 Identities=52% Similarity=0.978 Sum_probs=166.4
Q ss_pred cccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceecccccccc
Q psy9414 378 EQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGC 457 (582)
Q Consensus 378 eR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~C 457 (582)
...+||++||+.|||+||..|+++|++|.++++.||.+|.+++..++.++|.+..+++...+.+...+.+.++.+.|++|
T Consensus 11 i~~~LP~~nCg~CGy~gC~~yAeAIa~Gea~~n~Cp~gG~~gi~~la~llG~~~~~~~p~~~~~~~~~~~~id~~~CigC 90 (270)
T PRK06991 11 IEDLLPQTQCTKCGYDGCRPYAEAIAAGEANYNRCPPGGAEGIARLAALLGKPVIPLDPANGVERPRAVAVIDEQLCIGC 90 (270)
T ss_pred HHHhCCCCCCccCCCCChHHHHHHHHcCCCCCCcCCCCcHHHHHHHHHHhCCCccccccccccccccceeEEccccCCCC
Confidence 34489999999999999999999999999999999999999999999999998877655444455556778999999999
Q ss_pred chhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecCccccchhhhhhhhhHHHHHHHHHhhhhcccch
Q psy9414 458 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEK 537 (582)
Q Consensus 458 g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~ar~~~~~r~~rl~~~~ 537 (582)
|.|+.+||+++|.+...+...++...|++||.|+.+||++||.+.........|..|....++.++.+|..|..|+.+++
T Consensus 91 g~Cv~aCP~~AI~~~~~~~~~v~~~~CigCg~Cv~vCP~~AI~~~~~~~~~~~~~~~~~~~a~~ar~r~~~r~~Rl~~~~ 170 (270)
T PRK06991 91 TLCMQACPVDAIVGAPKQMHTVLADLCTGCDLCVPPCPVDCIDMVPVTGERTGWDAWSQAQADAARARHDARQARLRRER 170 (270)
T ss_pred cHHHHhCCHhheecccccceeeCHhhCCCchHHHhhCCcCCeEeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987655556678899999999999999999999887766667778888889999999999999999888
Q ss_pred HHHHHHHHHhhhhhhhc---------------CchhhHHHHHHHHHhHHHhhhhh
Q psy9414 538 KENYAKLKKATIQFKKN---------------NRETQKSLIEMAVKRIKELKNKE 577 (582)
Q Consensus 538 ~~~~~~~~~~~~~~~~~---------------~~~~k~~~~~~a~~~~~~~~~~~ 577 (582)
.++++++++.++..... +...|++.|++|++|+++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~a~i~aa~~ra~~~~~~~ 225 (270)
T PRK06991 171 EAAEARAAARAAASAAAAAAEASAAAAPAADDAEAKKRAIIAAALERARKKKEEL 225 (270)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccccchhhhHHHHHHHHHHHHHHHhhhcc
Confidence 87766654433322111 11336789999999999998665
No 23
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.96 E-value=5.9e-29 Score=244.86 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=106.7
Q ss_pred eecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecccC-CCccccccchhhhcccc
Q psy9414 48 IYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNL-THTITSKRKLLKLLEKK 126 (582)
Q Consensus 48 ~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~-~~~~lSKr~~~~~v~~~ 126 (582)
+|||||||+||||++|||||||||+||++||++|.||+++||| ..|.|.|+++|.. +|+|||||++
T Consensus 93 g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~------~~P~~~H~pll~~~~g~KLSKr~~------- 159 (230)
T cd00418 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGW------EPPRFYHFPRLLLEDGTKLSKRKL------- 159 (230)
T ss_pred CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCC------CCCeEEEeeeeeCCCCCCccCcCC-------
Confidence 7999999999999999999999999999999999999999999 9999999998754 5699999994
Q ss_pred ccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccC-----------------------CCCcccHHHHHHHHHHhhhc
Q psy9414 127 IVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSK-----------------------SDSWINIEILEQALRDDLDI 183 (582)
Q Consensus 127 ~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~-----------------------~~~~~~~~~l~~~~~~~l~~ 183 (582)
.+||++||++|++|+||++|+..+|++. +++.||+++|+++|+++|+.
T Consensus 160 ---------~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~~~~d~~kL~~~N~~~l~~ 230 (230)
T cd00418 160 ---------NTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSADATFDWAKLEWLNREYIRE 230 (230)
T ss_pred ---------CcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCCcccCHHHHHHHHHHHhcC
Confidence 4789999999999999999999999876 77899999999999999863
No 24
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.8e-28 Score=265.12 Aligned_cols=146 Identities=21% Similarity=0.190 Sum_probs=133.0
Q ss_pred CCceEEEEEEec--------------cCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcc
Q psy9414 8 DGAHVLRVKINM--------------KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLE 73 (582)
Q Consensus 8 ~g~~~~r~k~d~--------------~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e 73 (582)
++++|+|+|++. .++|..++|+|++|+++. |||+||++||||+|||||||||+|
T Consensus 138 ~~~~~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~------------ptY~~a~vVDD~~m~ithVIRG~d 205 (513)
T PRK14895 138 DIKPVIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLLRADGT------------ATYMLAVVVDDHDMGITHIIRGDD 205 (513)
T ss_pred CCCeeEEEEcCCCCceEEEeecccceecccccCCCcEEEEeCCC------------cchhhHHHHHHHhcCCCEEEECch
Confidence 578899999974 378899999999999985 999999999999999999999999
Q ss_pred cccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHH
Q psy9414 74 FQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESI 152 (582)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai 152 (582)
|+.||++|.+++++||| ..|.+.|++.+ +.+|.|||||++ ..+|..||++||.|+||
T Consensus 206 ~~~~t~~q~~l~~aLG~------~~p~~~H~plv~~~~g~KLSKR~g----------------~~~i~~~r~~G~~Peai 263 (513)
T PRK14895 206 HLTNAARQLAIYQAFGY------AVPSMTHIPLIHGADGAKLSKRHG----------------ALGIEAYKDMGYLPESL 263 (513)
T ss_pred HhhhHHHHHHHHHHcCC------CCCeEEEEEeEEcCCCCccccccC----------------chhHHHHHHCCCCHHHH
Confidence 99999999999999999 89999999965 589999999994 44688999999999999
Q ss_pred HHHHHHhccc----------------------CCCCcccHHHHHHHHHHhhhccCCc
Q psy9414 153 KLFCKRIGVS----------------------KSDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 153 ~~~~~~~G~s----------------------~~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
.||+.++||| ++++.||+++|.|+|.++|...+..
T Consensus 264 ~n~la~LG~s~~~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~ 320 (513)
T PRK14895 264 CNYLLRLGWSHGDDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRMLDND 320 (513)
T ss_pred HHHHHHhCCCCCCcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHhCCHH
Confidence 9999999964 5788999999999999999877543
No 25
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.3e-27 Score=260.28 Aligned_cols=144 Identities=22% Similarity=0.268 Sum_probs=131.3
Q ss_pred CCceEEEEEEe--------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcc
Q psy9414 8 DGAHVLRVKIN--------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLE 73 (582)
Q Consensus 8 ~g~~~~r~k~d--------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e 73 (582)
+.++|+|+|++ +.+++..++|+|++|+++ +|||+||++||||+|+|||||||+|
T Consensus 149 g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vVdD~~~~ithvIrG~d 216 (476)
T PRK01406 149 GEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDG------------TPTYNFAVVVDDHLMGITHVIRGED 216 (476)
T ss_pred CCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEecCC------------CccccchHHHHHHHcCCCEEEECch
Confidence 34789999764 567889999999999987 5999999999999999999999999
Q ss_pred cccChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHH
Q psy9414 74 FQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESI 152 (582)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai 152 (582)
|+.++++|.+++++||| ..|.+.|++. +|.+|.|||||++ ..||.+||++||.|+||
T Consensus 217 ~~~~t~~q~~l~~alG~------~~p~~~H~pli~~~~g~klSKR~g----------------~~~l~~l~~~G~~p~Ai 274 (476)
T PRK01406 217 HLSNTPKQILLYEALGW------EVPVFAHLPLILGPDGKKLSKRHG----------------ATSVEQYRDMGYLPEAL 274 (476)
T ss_pred hhcCHHHHHHHHHHhCC------CCCeEEEeeeeeCCCCCcccCcCC----------------ccCHHHHHHCCCCHHHH
Confidence 99999999999999999 8999999995 5899999999994 35899999999999999
Q ss_pred HHHHHHhccc----------------------CCCCcccHHHHHHHHHHhhhccC
Q psy9414 153 KLFCKRIGVS----------------------KSDSWINIEILEQALRDDLDIKA 185 (582)
Q Consensus 153 ~~~~~~~G~s----------------------~~~~~~~~~~l~~~~~~~l~~~~ 185 (582)
.||+..+||| +++..||+++|+|+|+++|...+
T Consensus 275 ~n~l~~lG~s~~~~e~~~~~~~i~~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~ 329 (476)
T PRK01406 275 LNYLALLGWSHGDQEIFSLEELIELFDLERVSKSPARFDIKKLDWLNGHYIRELD 329 (476)
T ss_pred HHHHHHhCCCCCccccCCHHHHHHhcChhhCCCCCccccHHHHHHHHHHHHHhCC
Confidence 9999999975 57789999999999999998764
No 26
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.94 E-value=9.5e-28 Score=242.42 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeee-----ecccccccccccccCCCcEEecCcccccChHH
Q psy9414 6 FKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCI-----YPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 6 ~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~-----~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
++++++++|+|++. .+..++|+|..++.. .|+...+.|+| |||||||++||||+|||||||||+||++||++
T Consensus 125 ~~~~~~~~Rlk~~~--~~~~~~D~~~g~~~~-~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~ 201 (272)
T TIGR03838 125 RPARPAAWRLRVPD--GVIAFDDRLQGPQQQ-DLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPR 201 (272)
T ss_pred ccCCCceEEEecCC--CCceEEEeeeeEEEe-cCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHH
Confidence 46788999999984 567788888888763 45666666888 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.|||++||| ..|.|+|++. ++.+|+|||||++..+|+++ ||+ +++.+++..+
T Consensus 202 q~~l~~aLg~------~~P~y~H~pll~~~~g~kLSKR~~~~~i~~~------~~~--------------~~~~~~l~~l 255 (272)
T TIGR03838 202 QIYLQRLLGL------PPPRYLHLPLVVNADGEKLSKQNGAPALDLS------HPL--------------PALLAALRFL 255 (272)
T ss_pred HHHHHHHhCC------CCCeEEechhhhCCCCCeeeccCCccchhcC------CcH--------------HHHHHHHHHc
Confidence 9999999999 9999999995 59999999999988887664 344 5555666666
Q ss_pred cccC
Q psy9414 160 GVSK 163 (582)
Q Consensus 160 G~s~ 163 (582)
|++.
T Consensus 256 G~~~ 259 (272)
T TIGR03838 256 GLPP 259 (272)
T ss_pred CCCC
Confidence 6653
No 27
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.94 E-value=2.9e-27 Score=257.40 Aligned_cols=147 Identities=22% Similarity=0.266 Sum_probs=133.5
Q ss_pred CCCceEEEEEEec--------------cCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCc
Q psy9414 7 KDGAHVLRVKINM--------------KSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTL 72 (582)
Q Consensus 7 ~~g~~~~r~k~d~--------------~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~ 72 (582)
+++++|+|+|++. ..++..++|+|++|+++ +|||+||++|||++|||||||||.
T Consensus 138 ~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG------------~ptY~~A~~vdD~~~~ithvIrG~ 205 (470)
T TIGR00464 138 KGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRSDG------------SPTYNFAVVVDDYLMKITHVIRGE 205 (470)
T ss_pred cCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEecCC------------CcccccHHHHHHHhCCCCEEEECc
Confidence 4678999999985 44788999999999997 599999999999999999999999
Q ss_pred ccccChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHH
Q psy9414 73 EFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPES 151 (582)
Q Consensus 73 e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~a 151 (582)
||+.++++|.+++++||| ..|.+.|++. ++..|+|||||++ ..||.+||++||.|+|
T Consensus 206 d~~~~t~~~~~l~~aLg~------~~p~~~H~p~l~~~~g~kLSKR~g----------------~~~l~~l~~~g~~p~a 263 (470)
T TIGR00464 206 DHISNTPKQILIYQALGW------KIPVFAHLPMILDEDGKKLSKRDG----------------ATSIMQFKEQGYLPEA 263 (470)
T ss_pred hhhcCHHHHHHHHHHcCC------CCCeEEEEeeeecCCCccccccCC----------------CccHHHHHHCCCCHHH
Confidence 999999999999999999 8999999995 6889999999993 5689999999999999
Q ss_pred HHHHHHHhccc-----------------------CCCCcccHHHHHHHHHHhhhccCCc
Q psy9414 152 IKLFCKRIGVS-----------------------KSDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 152 i~~~~~~~G~s-----------------------~~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
+.+|+..+|++ +++..||+++|.|+|+++|...+..
T Consensus 264 ~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~N~~~l~~l~~~ 322 (470)
T TIGR00464 264 LINYLALLGWSPPDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWLNAHYIKELPDE 322 (470)
T ss_pred HHHHHHHcCCCCCCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHHHHHHHHhCCHH
Confidence 99999999864 4667999999999999999977543
No 28
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.94 E-value=3.3e-27 Score=240.98 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=105.8
Q ss_pred ceEEEEEEe--------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccc
Q psy9414 10 AHVLRVKIN--------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQ 75 (582)
Q Consensus 10 ~~~~r~k~d--------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~ 75 (582)
++++|+|++ +.+++..++|||++|.++ +||||||+|||||+|||||||||+||+
T Consensus 136 ~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~dg------------~ptY~lA~vVDD~~~gIThVvRG~D~l 203 (299)
T PRK05710 136 PPAWRLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRADG------------LFAYQLAVVVDDALQGVTHVVRGADLL 203 (299)
T ss_pred CceEEEEcCCCceEEEEecceeEeeCCCCCCCCEEEEecCC------------CccccchhHHhcccCCCCEEEeChhhh
Confidence 579999997 456777899999999986 699999999999999999999999999
Q ss_pred cChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHH
Q psy9414 76 DHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 154 (582)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~ 154 (582)
+||++|.|||++||| ..|.|.|++. ++.+|+|||||++... |.. .|+.|+ |.+
T Consensus 204 ~~t~~Q~~l~~aLg~------~~P~y~H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~ 257 (299)
T PRK05710 204 DSTPRQIYLQQLLGL------PTPRYLHLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAA 257 (299)
T ss_pred hcCHHHHHHHHHcCC------CCCeEEEeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHH
Confidence 999999999999999 9999999995 5899999999995443 333 899999 999
Q ss_pred HHHHhcccCC
Q psy9414 155 FCKRIGVSKS 164 (582)
Q Consensus 155 ~~~~~G~s~~ 164 (582)
|+..+|++..
T Consensus 258 ~l~~lG~~~~ 267 (299)
T PRK05710 258 ALRFLGQPPP 267 (299)
T ss_pred HHHHcCCCCC
Confidence 9999999864
No 29
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.92 E-value=8.6e-26 Score=224.13 Aligned_cols=113 Identities=25% Similarity=0.279 Sum_probs=102.5
Q ss_pred eecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhcccc
Q psy9414 48 IYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKK 126 (582)
Q Consensus 48 ~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~ 126 (582)
++|||+||++|||++|||||||||+||+.++++|.|++++||| ..|.++|+++| +.+|.|||||++
T Consensus 102 g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~------~~p~~~h~pll~~~~g~KLSKR~~------- 168 (239)
T cd00808 102 GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGW------EPPKFAHLPLILNPDGKKLSKRKG------- 168 (239)
T ss_pred CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCC------CCCceEeeccccCCCCCcccCCCC-------
Confidence 7999999999999999999999999999999999999999999 89999999985 899999999994
Q ss_pred ccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc-----------------------CCCCcccHHHHHHHHHHhhh
Q psy9414 127 IVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS-----------------------KSDSWINIEILEQALRDDLD 182 (582)
Q Consensus 127 ~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s-----------------------~~~~~~~~~~l~~~~~~~l~ 182 (582)
.+||++||++|++|+||++|+..+|++ +++..||+++|+++|+++|.
T Consensus 169 ---------~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~d~~kL~~~n~~~l~ 238 (239)
T cd00808 169 ---------DTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSKSPAIFDPEKLDWLNGQYIR 238 (239)
T ss_pred ---------CccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCcCcCcCCHHHHHHHHHHHhh
Confidence 379999999999999999999999964 35556777777777777764
No 30
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=99.84 E-value=8.7e-22 Score=181.49 Aligned_cols=133 Identities=53% Similarity=1.002 Sum_probs=113.5
Q ss_pred cccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcccccc-ccCCCCCcccceeccc
Q psy9414 374 HAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNT-IYGNEKSRCCAIIKEN 452 (582)
Q Consensus 374 ~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~id~~ 452 (582)
.+...-.+||++||++|||+||.+|+++|+.+....+.|++||...+.+++..+|+...+... .+.....+....+|++
T Consensus 36 ~Ve~I~~lLPqsqCgqCGy~GC~pYAeAia~~ga~in~C~PGG~~vi~kI~elLgvep~~~~~~~~~~~~~~~va~i~e~ 115 (198)
T COG2878 36 VVEKIDALLPQTQCGQCGYPGCRPYAEAIAEGGAKINRCAPGGEAVIRKIAELLGVEPPPADGSEHGEEQARMVALIDEA 115 (198)
T ss_pred HHHHHHHhCCccccccCCCCccHHHHHHHHcCCCccccCCCCcHHHHHHHHHHhcCCCCCcchhhhhccccceeeEecch
Confidence 344444589999999999999999999999999999999999999999999999954433211 1223455667899999
Q ss_pred cccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecCc
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 506 (582)
.|+||..|+++||++||....+..+.+..+.|++|+.|+..||+++|.+.....
T Consensus 116 ~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCTGC~lCva~CPtdci~m~~~~~ 169 (198)
T COG2878 116 NCIGCTKCIQACPVDAIVGATKAMHTVIADLCTGCDLCVAPCPTDCIEMQPVAE 169 (198)
T ss_pred hccccHHHHHhCChhhhhccchhHHHHHHHHhcCCCcccCCCCCCceeeeeccc
Confidence 999999999999999999887777888899999999999999999999987654
No 31
>PRK08764 ferredoxin; Provisional
Probab=99.84 E-value=5e-21 Score=175.05 Aligned_cols=129 Identities=50% Similarity=1.016 Sum_probs=106.3
Q ss_pred ccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccc
Q psy9414 373 KHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKEN 452 (582)
Q Consensus 373 d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 452 (582)
.++.....+||+.||++|||++|..|+++|++|.+++..|+.++.+.++.++..+|+...++....+.........++.+
T Consensus 6 ~~~~~~~~~lp~~ncg~cg~~~c~~~a~~~v~g~~~~~~C~~~G~c~lq~~a~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 85 (135)
T PRK08764 6 TLVERLDRLLPQTQCGQCGFDGCRPYAQAMARGEATIDRCPPGGDAGARALAQVLGVPARPYDRSRGTHKLPQVAWIVEA 85 (135)
T ss_pred cHHHHHHHhCCCCCCccCCCcCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCCCccccccccCCCCCCeeEEECcc
Confidence 45566677899999999999999999999999999999999999999999999999876555322221111223345678
Q ss_pred cccccchhhhcccccceecccccceeecccCCccccchhhcCccCceee
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
+|++|++|+++||.++|.....+...++...|++||.|+.+||++||.+
T Consensus 86 ~Ci~C~~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 86 DCIGCTKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred cCcCcchHHHhCChhhcCccCCCceeecCCcCcCccchhhhcCccceEe
Confidence 9999999999999999987654445678889999999999999999976
No 32
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=99.80 E-value=1.3e-19 Score=174.94 Aligned_cols=135 Identities=51% Similarity=0.997 Sum_probs=110.8
Q ss_pred cccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCC-CCcccce
Q psy9414 370 FPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNE-KSRCCAI 448 (582)
Q Consensus 370 ~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 448 (582)
..+.++.....++|+.+|++||+++|..++++|+ +..+...|+.++.+.++.++..+|+...++....... .....+.
T Consensus 32 e~dp~~~~l~~~lP~~nCg~Cg~~~c~~~a~av~-~~~~~~~C~~~G~c~lq~la~~~Gv~~~~~~~~~~~~~~~~~~~~ 110 (191)
T PRK05113 32 EGDPIVEKIDAILPQSQCGQCGYPGCRPYAEAIA-NGEKINKCPPGGEATMLKLAELLGVEPQPLDGEAQEATPARKVAF 110 (191)
T ss_pred cCCChHHHHHHhCCcCCccccCCCCcHHHHHHHh-CCCCcCcCCCCchHHHHHHHHHhCCCcccCccccccccccCceeE
Confidence 3345556666699999999999999999999999 4467899999999999999999998766553321111 1234678
Q ss_pred eccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+|.++|++|++|+++||+++|....++...++...|++||.|+.+||++||.+.+..
T Consensus 111 id~~~Ci~Cg~Cv~aCp~~ai~~~~~~~~~v~~~~C~~Cg~Cv~vCP~~AI~~~~~~ 167 (191)
T PRK05113 111 IDEDNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTGCDLCVAPCPTDCIEMIPVA 167 (191)
T ss_pred EeCCcCCCCChhhhhCCHhhhecccCCceeecCCcCCchHHHHHHcCcCceEEeecc
Confidence 899999999999999999999876666667888999999999999999999998654
No 33
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=99.76 E-value=9.1e-19 Score=165.68 Aligned_cols=128 Identities=54% Similarity=1.033 Sum_probs=107.3
Q ss_pred ccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccC--CCCCcccceeccc
Q psy9414 375 AQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEKSRCCAIIKEN 452 (582)
Q Consensus 375 ~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~id~~ 452 (582)
+.....++|..+|+.||+++|..+++++++++. ...|+.++.+.++.++..+|+...++..... ....+....+|.+
T Consensus 35 ~~~i~~~lP~~nCg~Cg~~~c~~~a~av~~~~~-i~~C~~~g~c~l~~~a~~~gv~~~~~~~~~~~~~~~~~~~~~id~~ 113 (165)
T TIGR01944 35 VEEIDALLPQTQCGQCGYPGCRPYAEAIAEGEA-INKCPPGGEAVILALAELLGVEPIPQPLDADAGTIQPPMVALIDED 113 (165)
T ss_pred HHHHHHhCCCCCCccCCCCChHHHHHHHHcCCC-cCcCccccHHHHHHHHHHcCCCcccCCccccccccCCCceEEEECC
Confidence 344445899999999999999999999999888 8999999999999999999987665432211 1134456789999
Q ss_pred cccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+|++|++|+++||++++....++...++...|++||.|+.+||++||.+.+
T Consensus 114 ~Ci~Cg~C~~aCp~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 164 (165)
T TIGR01944 114 NCIGCTKCIQACPVDAIVGAAKAMHTVIADECTGCDLCVEPCPTDCIEMIP 164 (165)
T ss_pred cCCChhHHHHhCCccceEecCCCceEeecccccChhHHHHhcCcCceEeeC
Confidence 999999999999999998776655677889999999999999999998863
No 34
>PRK07118 ferredoxin; Validated
Probab=99.58 E-value=2e-15 Score=154.22 Aligned_cols=135 Identities=33% Similarity=0.625 Sum_probs=106.1
Q ss_pred ccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc----c--C-C-
Q psy9414 369 IFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI----Y--G-N- 440 (582)
Q Consensus 369 ~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~----~--~-~- 440 (582)
+..+.++...+.+||+.||++||+++|..|+++|+++....+.||.++...+.+++..+|......... . + .
T Consensus 31 v~~d~~~~~i~~~lp~~nCg~Cg~~~C~~~a~a~~~g~~~~~~C~~~~~~~~~~i~~~lg~~~~~~~~~~a~v~C~g~~~ 110 (280)
T PRK07118 31 VEEDPRVEAVREVLPGANCGGCGYPGCDGYAEAVVNGDAPPNLCPVGGAEVAEKVAEILGKEAAESEPKVAVVRCQGTCD 110 (280)
T ss_pred ccCCCcHHHHHHhCCCCCCCCCCccCHHHHHHHHHcCCCCcccCCCCCHHHHHHHHHHhCCCCCcCCceEEEEecCCChh
Confidence 345667777778999999999999999999999999999999999999999999999999854332110 0 0 0
Q ss_pred ---C--CCcc--------cc----eeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 441 ---E--KSRC--------CA----IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 441 ---~--~~~~--------~~----~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+ ...+ .+ ......|++||.|+++||+++|.+.. +...++.++|++|+.|+.+||.++|.+.+
T Consensus 111 ~~~~~~~y~g~~~C~~~~~~~~g~~~c~~~CigCg~C~~aCp~~AI~~~~-g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~ 189 (280)
T PRK07118 111 KAKERYEYQGIKDCAAAALLFGGPKGCSYGCLGLGSCVAACPFDAIHIEN-GLPVVDEDKCTGCGACVKACPRNVIELIP 189 (280)
T ss_pred hccccccccCcccHHHHHHhccCcccCCCCCcChhHHHHhCCccCeEccC-CeEEEChhhCcChhHHHHhcCccceeeec
Confidence 0 0000 00 11224799999999999999998865 56778999999999999999999998875
Q ss_pred c
Q psy9414 504 V 504 (582)
Q Consensus 504 ~ 504 (582)
.
T Consensus 190 ~ 190 (280)
T PRK07118 190 K 190 (280)
T ss_pred c
Confidence 4
No 35
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.34 E-value=7.7e-13 Score=152.11 Aligned_cols=128 Identities=17% Similarity=0.286 Sum_probs=93.7
Q ss_pred EccccccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc--cC
Q psy9414 362 LEPNLKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI--YG 439 (582)
Q Consensus 362 vep~l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~--~~ 439 (582)
+.++|...+..+.++-.|+. .+...+++|+.+|.+|+.++.|.||.++..+|+...++... ..
T Consensus 64 v~dGM~V~T~s~~v~~~Rk~---------------vle~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~ 128 (819)
T PRK08493 64 AKEGMNILTNTPNLMDERNA---------------IMQTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHK 128 (819)
T ss_pred CCCCCEEEecCHHHHHHHHH---------------HHHHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccc
Confidence 44555555555666666662 56778899999999999999999999999999876655321 11
Q ss_pred CCCCcccceeccccccccchhhhcccc----cceecccccce------------------------ee-----cccCCcc
Q psy9414 440 NEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIGAAKHMH------------------------TI-----FSKLCTG 486 (582)
Q Consensus 440 ~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai~~~~~~~~------------------------~i-----~~~~C~~ 486 (582)
.+...+.+.+|.++||.|++||++|+. +++.+..++.. .+ ....|++
T Consensus 129 ~~~~~~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~ 208 (819)
T PRK08493 129 PHKHWGKINYDPSLCIVCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSF 208 (819)
T ss_pred cccCCCcEEechhhcccccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccc
Confidence 233446789999999999999999996 34433322211 01 2468999
Q ss_pred ccchhhcCccCceeeeec
Q psy9414 487 CDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 487 Cg~Cv~~CP~~AI~~~~~ 504 (582)
||.|+++||+|||.....
T Consensus 209 CG~Cv~VCPvGAL~~k~~ 226 (819)
T PRK08493 209 CGECIAVCPVGALSSSDF 226 (819)
T ss_pred cCcHHHhCCCCccccCcc
Confidence 999999999999987643
No 36
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.30 E-value=1.1e-12 Score=143.50 Aligned_cols=106 Identities=21% Similarity=0.397 Sum_probs=85.9
Q ss_pred hHHHHHHcccccCCCCCCC-chHHHHHHHHhhCCCcccccc-----ccCCCCCcccceeccccccccchhhhcccc----
Q psy9414 397 QYAEAIANKKANYNQCPTG-GRKGIIKLAKYLNKPIIPLNT-----IYGNEKSRCCAIIKENKCIGCTLCIQSCPV---- 466 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~-~~~~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~---- 466 (582)
.+...|.+|+..|.+|+.+ |.|+++.++..+|.....+.. .+..|.+.+...+|+++||.||+||++|-.
T Consensus 88 ~md~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~ 167 (978)
T COG3383 88 AMDRILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVN 167 (978)
T ss_pred HHHHHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhce
Confidence 5788899999999999999 999999999999987655432 345677888999999999999999999993
Q ss_pred cceecccccc---------eeecccCCccccchhhcCccCceeee
Q psy9414 467 DAIIGAAKHM---------HTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 467 ~ai~~~~~~~---------~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.++.++.++. ..++.+.|+.||.|+++||++|+.-.
T Consensus 168 eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek 212 (978)
T COG3383 168 EALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEK 212 (978)
T ss_pred eEEEeecccCCcceecCCCCccccccccccCccceecchhhhhhh
Confidence 3444443321 34567899999999999999998543
No 37
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=99.30 E-value=1.2e-12 Score=126.09 Aligned_cols=84 Identities=27% Similarity=0.700 Sum_probs=70.9
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
.+|+||..|+|. .+||+++.. .+...|++.+|.++||||+.|+.+|
T Consensus 67 ~~C~HC~~ppCv-------------~vCPtgA~~---------------------k~~~dGiV~vd~d~CIGC~yCi~AC 112 (203)
T COG0437 67 ISCMHCEDPPCV-------------KVCPTGALF---------------------KREEDGIVLVDKDLCIGCGYCIAAC 112 (203)
T ss_pred ccccCCCCCccc-------------ccCCCcceE---------------------EecCCCEEEecCCcccCchHHHhhC
Confidence 489999999998 899998742 2334789999999999999999999
Q ss_pred cccceecccccceeecccCCccc------c---chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGC------D---LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~C------g---~Cv~~CP~~AI~~~~~~ 505 (582)
|++|..++..+ ...++|++| | .|+++||++|+.|.+.+
T Consensus 113 Pyga~~~~~~~---~~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~ 159 (203)
T COG0437 113 PYGAPQFNPDK---GVVDKCTFCVDRVAVGKLPACVEACPTGALIFGDID 159 (203)
T ss_pred CCCCceeCccc---CcccccCcchhhHhcCCCCcccccCCcccccccchh
Confidence 99999887532 226899999 6 89999999999987654
No 38
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=99.29 E-value=4.6e-13 Score=115.22 Aligned_cols=82 Identities=32% Similarity=0.802 Sum_probs=56.0
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
.+|.||..+.|. .+||.++.. .+...|.+.+|.++|+||+.|+.+|
T Consensus 7 ~~C~hC~~ppC~-------------~~CP~~Ai~---------------------~~~~~G~V~id~~~CigC~~C~~aC 52 (98)
T PF13247_consen 7 VQCRHCEDPPCV-------------EACPTGAIY---------------------KDPEDGIVVIDEDKCIGCGYCVEAC 52 (98)
T ss_dssp EC---BSS-HHH-------------HHCTTTSEE---------------------EETTTS-EEE-TTTCCTHHHHHHH-
T ss_pred CcCcCcCCCchh-------------hhCCccceE---------------------EEcCCCeEEechhhccCchhhhhhh
Confidence 489999999997 789988642 2334678999999999999999999
Q ss_pred cccceecccccceeecccCCccc---------cchhhcCccCceeeee
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIE 503 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~C---------g~Cv~~CP~~AI~~~~ 503 (582)
|+++|.++.... ...+|.+| ..|+++||++||.+.+
T Consensus 53 P~~ai~~~~~~~---~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 53 PYGAIRFDPDTG---KARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp TTS-EEEETTTT---CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred ccCcceeecccc---cCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 999999875432 34579998 6899999999999864
No 39
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.29 E-value=1.4e-12 Score=101.68 Aligned_cols=54 Identities=43% Similarity=0.986 Sum_probs=36.4
Q ss_pred eeccccccccchhhhccccc---ceecccccceeecccCCccccchhhcCcc-Cceee
Q psy9414 448 IIKENKCIGCTLCIQSCPVD---AIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISM 501 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~---ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~-~AI~~ 501 (582)
.+|.++|++||+|+.+||.+ ++....++...++.+.|++||.|+.+||+ +||+|
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEGKKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTTTSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCCeeEEeccccCcCcCcccccCCCccCCCC
Confidence 58999999999999999974 55555455556778999999999999997 99986
No 40
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=99.28 E-value=1.3e-12 Score=123.36 Aligned_cols=66 Identities=29% Similarity=0.651 Sum_probs=56.5
Q ss_pred CCCcccceeccccccccchhhhcccccceecccc----------cceeecccCCccccchhhcCccCceeeeecCc
Q psy9414 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506 (582)
Q Consensus 441 ~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~----------~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 506 (582)
...+|...++.++||||+.|+.+||.+||.+... ....+|..+|++||.|+++||++||.++..+.
T Consensus 44 ~rfRG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e 119 (172)
T COG1143 44 PRFRGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFE 119 (172)
T ss_pred CCccceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCccee
Confidence 4667888999999999999999999999987422 13567899999999999999999999987653
No 41
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.26 E-value=3.7e-12 Score=128.05 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=93.0
Q ss_pred EccccccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcccccccc---
Q psy9414 362 LEPNLKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIY--- 438 (582)
Q Consensus 362 vep~l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~--- 438 (582)
+.++|...+..+.+.-.|+. .+...|++|+.+|..|+.++.|.||.++..+|+...++....
T Consensus 134 V~eGM~V~T~Se~v~~~Rk~---------------vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~ 198 (297)
T PTZ00305 134 ALPGMSIITDSRLVRDAREG---------------NVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAV 198 (297)
T ss_pred CCCCCEEEeCCHHHHHHHHH---------------HHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccc
Confidence 44555555556666666662 678889999999999999999999999999998766553211
Q ss_pred CCCCCcccceeccccccccchhhhcccc----cceecccccce-----eecccCCcc--ccchhhcCccCceeeeecC
Q psy9414 439 GNEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIGAAKHMH-----TIFSKLCTG--CDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 439 ~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai~~~~~~~~-----~i~~~~C~~--Cg~Cv~~CP~~AI~~~~~~ 505 (582)
..+.+.+.+.+|.++||.||+||++|-. ++|.+...+.. ..+...|.. ||.|+.+||+|||...+.+
T Consensus 199 ~~~~~~p~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~ 276 (297)
T PTZ00305 199 QDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDAD 276 (297)
T ss_pred cccCCCCceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcc
Confidence 2233556778999999999999999996 45655544421 112223544 5669999999999877543
No 42
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.26 E-value=7.2e-12 Score=125.43 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=82.5
Q ss_pred hHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcccccccc---CCCCCcccceeccccccccchhhhcccc--cceec
Q psy9414 397 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIY---GNEKSRCCAIIKENKCIGCTLCIQSCPV--DAIIG 471 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~--~ai~~ 471 (582)
.+...+++|+.+|..|+.++.|.|+.++..+|+...++...+ +.+.+.+.+.+|.++|++|++|+.+||. +++.+
T Consensus 88 ~l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~ 167 (234)
T PRK07569 88 IVELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDEIEGAHTW 167 (234)
T ss_pred HHHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHHhcCCcee
Confidence 567788899999999999999999999999998765554322 3345677889999999999999999994 33222
Q ss_pred --cccc--cee--------ecccCCccccchhhcCccCceeeeec
Q psy9414 472 --AAKH--MHT--------IFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 472 --~~~~--~~~--------i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
...+ ... .+...|++||.|+.+||++||.....
T Consensus 168 ~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 168 DVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred eecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 1111 111 12458999999999999999987754
No 43
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.21 E-value=1.1e-11 Score=140.68 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=94.2
Q ss_pred EccccccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc---c
Q psy9414 362 LEPNLKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI---Y 438 (582)
Q Consensus 362 vep~l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~---~ 438 (582)
+.++|...+..+.+.-.|.. .+...|++|+.+|.+|..++.|.||.++..+|....++... .
T Consensus 64 ~~~gm~v~t~~~~~~~~r~~---------------~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~ 128 (603)
T TIGR01973 64 VTDGMKISTNSEKVKKAREG---------------VMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTV 128 (603)
T ss_pred CCCCCEEEeCCHHHHHHHHH---------------HHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccC
Confidence 44455545555666666662 67888999999999999999999999999999876665431 2
Q ss_pred CCCCCcccceeccccccccchhhhcccc----cceeccccccee-e-----cccCCccccchhhcCccCceeeee
Q psy9414 439 GNEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIGAAKHMHT-I-----FSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 439 ~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai~~~~~~~~~-i-----~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..+...+.+.+|.++||.|++||++|-. +++.+..++... + ....|.+||.|+++||+|||....
T Consensus 129 ~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 129 ENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CCCCCCCCeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 2344566889999999999999999975 455544433211 1 123688999999999999997654
No 44
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=99.21 E-value=5.2e-12 Score=133.27 Aligned_cols=123 Identities=22% Similarity=0.397 Sum_probs=83.7
Q ss_pred cCCCcccccccCCceEEEEEEEcccccccccccccccccc--ccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchH
Q psy9414 341 VNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN--LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRK 418 (582)
Q Consensus 341 ~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~--glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~ 418 (582)
.++.||.+++...... +..+|++..+...-..+|+.. ..-...|.+|+.+.|. .+||.++..
T Consensus 138 ~wgpNwdddl~g~~~~---~~~d~~~~~~~~~~~g~~p~~~m~y~p~~C~HC~nP~CV-------------~ACPtGAI~ 201 (492)
T TIGR01660 138 EWGPNWEDDLGGEFAK---RRKDKNFDKIQKDIYGEFENTFMMYLPRLCEHCLNPACV-------------ASCPSGAIY 201 (492)
T ss_pred CcCCCcccccCCCccc---ccCCccHhHHhHHhcccCCCceEEECCCcCcCCCcccch-------------hhCccCCeE
Confidence 3478888888544332 335566554322222233322 1123489999999997 789987641
Q ss_pred HHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcccccceecccccceeecccCCcccc---------c
Q psy9414 419 GIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD---------L 489 (582)
Q Consensus 419 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg---------~ 489 (582)
.+...+.+.+|.++|++|+.|+.+||++|+.+.... ....+|++|. .
T Consensus 202 ---------------------k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~n~~~---g~~~KCd~C~~Rie~G~pPa 257 (492)
T TIGR01660 202 ---------------------KREEDGIVLIDQDKCRGWRMCISGCPYKKIYFNWKT---GKSEKCIFCYPRIEAGQPTV 257 (492)
T ss_pred ---------------------EecCCCeEEEehhhccChHHHHHhCCCCCcEecCCC---CccccCCCChhHHhCCCCCc
Confidence 112345678999999999999999999999876432 2356999994 6
Q ss_pred hhhcCccCceeeee
Q psy9414 490 CIKKCPVNCISMIE 503 (582)
Q Consensus 490 Cv~~CP~~AI~~~~ 503 (582)
|+++||++|+.+..
T Consensus 258 CVeaCP~~Ar~fG~ 271 (492)
T TIGR01660 258 CSETCVGRIRYLGV 271 (492)
T ss_pred chhhcChhhhhhhh
Confidence 99999999977653
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.19 E-value=1.5e-11 Score=140.69 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=95.3
Q ss_pred EEccccccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc---
Q psy9414 361 YLEPNLKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI--- 437 (582)
Q Consensus 361 ~vep~l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~--- 437 (582)
.+.++|...+..+.++-.|.+ .+...|++|+.+|..|.+++.|.||.++..+|....++...
T Consensus 66 ~v~~gm~v~T~s~~v~~~r~~---------------~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~ 130 (687)
T PRK09130 66 PVGEGMVIFTNTPMVKKAREG---------------VMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRA 130 (687)
T ss_pred CCCCCCEEEeCCHHHHHHHHH---------------HHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccc
Confidence 345556656666777777773 67889999999999999999999999999999876665432
Q ss_pred cCCCCCcccceeccccccccchhhhcccc----cceecccccce-ee-----cccCCccccchhhcCccCceeeee
Q psy9414 438 YGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIGAAKHMH-TI-----FSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 438 ~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai~~~~~~~~-~i-----~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...+...+.+..|.++||.|++||++|-. +++.+.+++.. .+ ....|..||.|+.+||+|||+-.+
T Consensus 131 ~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 131 VEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred cCcCCCCCcEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccc
Confidence 12234556788999999999999999985 33433333211 11 133588999999999999998654
No 46
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=99.17 E-value=1.2e-11 Score=140.23 Aligned_cols=124 Identities=27% Similarity=0.422 Sum_probs=89.1
Q ss_pred eccccccccchhhhcccccceecc---------cccceeecccCCccccchhhcCccCceeeeecCccccch---hhhhh
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGW---DAWSQ 516 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~---------~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~~---~~~~~ 516 (582)
.+...|++||.|+.+||.+.+... ......++...|+.||.|..+||++ |.+.......+.. ..+..
T Consensus 367 ~~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~-Iplv~~~r~aK~~i~~~~~~~ 445 (695)
T PRK05035 367 PPEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN-IPLVQYYRQAKAEIRAIEQEK 445 (695)
T ss_pred CchhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC-CcHHHHHHHHHHHHHHhhhhh
Confidence 356899999999999999987431 1111234557899999999999999 6666544332221 23455
Q ss_pred hhhHHHHHHHHHhhhhcccchHHHHHHHHHhhhhhhhcCchhhHHHHHHHHHhHHHhhhhh
Q psy9414 517 KKADDARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELKNKE 577 (582)
Q Consensus 517 ~~~~~ar~~~~~r~~rl~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~ 577 (582)
.+++.++.||..|+.|+++++.++.++.+++++.....+ ..++++|++|+++++...
T Consensus 446 ~~a~~ar~r~e~r~~R~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~ 502 (695)
T PRK05035 446 KKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKD----KDAVAAALARVKAKKAAA 502 (695)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc----cchhHHHHHHHHhhhhcc
Confidence 667889999999999999999888777666655443321 467888888888887643
No 47
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.16 E-value=2e-11 Score=142.36 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=94.4
Q ss_pred EccccccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc---c
Q psy9414 362 LEPNLKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI---Y 438 (582)
Q Consensus 362 vep~l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~---~ 438 (582)
+.++|...+..+.++-.|+. .+...+++|+.+|.+|..++.|.||.++..+|....++... .
T Consensus 66 ~~~gm~v~t~~~~~~~~r~~---------------~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~ 130 (776)
T PRK09129 66 VTDGMKVFTRSEKALKAQKS---------------VMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVV 130 (776)
T ss_pred CCCCCEEEcCCHHHHHHHHH---------------HHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccC
Confidence 44555555556666666662 67888899999999999999999999999999876555331 2
Q ss_pred CCCCCcccceeccccccccchhhhcccc----cceeccccccee-e-----cccCCccccchhhcCccCceeeee
Q psy9414 439 GNEKSRCCAIIKENKCIGCTLCIQSCPV----DAIIGAAKHMHT-I-----FSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 439 ~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai~~~~~~~~~-i-----~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..+...+.+..|.++||.||+||++|-. +++.+.+++... + ....|..||.|+++||+|||....
T Consensus 131 ~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 131 FDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred CccCCCcceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence 2345667888999999999999999985 455544333211 1 234688999999999999998664
No 48
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.14 E-value=3.3e-11 Score=140.49 Aligned_cols=107 Identities=11% Similarity=0.156 Sum_probs=80.4
Q ss_pred hHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccc---cCCC-CCcccceeccccccccchhhhcccc----cc
Q psy9414 397 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI---YGNE-KSRCCAIIKENKCIGCTLCIQSCPV----DA 468 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~id~~~Ci~Cg~Cv~~CP~----~a 468 (582)
.+...|++|+.+|..|+.++.|.||.++..+|....++... .+.. +..+.+.+|.++||.|++|+++|-. ++
T Consensus 91 ~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~rCI~C~rCvr~c~ev~g~~~ 170 (797)
T PRK07860 91 VMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDRERCVLCARCTRFSDQIAGDPF 170 (797)
T ss_pred HHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecccccccCcHHHHHHHhhcCCcE
Confidence 67888999999999999999999999999999876665321 1111 2235678899999999999999985 34
Q ss_pred eecccccce-e-----ecccCCccccchhhcCccCceeeee
Q psy9414 469 IIGAAKHMH-T-----IFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 469 i~~~~~~~~-~-----i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.+.+.+.. . .....|..||.|+++||+|||....
T Consensus 171 l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 171 IDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred EEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccc
Confidence 444333321 1 1234688999999999999997553
No 49
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.13 E-value=5.3e-11 Score=140.06 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=81.2
Q ss_pred hHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcccccc---ccCCCCCcccceeccccccccchhhhcccc----cce
Q psy9414 397 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNT---IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----DAI 469 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~ai 469 (582)
-+...+++|+.+|.+|+.++.|.||.++..+|....++.. ....+...+.+..|.++||.|++||++|-. .++
T Consensus 91 ~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~g~~~l 170 (847)
T PRK08166 91 VVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYAGGTDL 170 (847)
T ss_pred HHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhcCcceE
Confidence 5677888999999999999999999999999987665532 122344567889999999999999999985 233
Q ss_pred ecccccce-ee-----cccCCccccchhhcCccCceeeee
Q psy9414 470 IGAAKHMH-TI-----FSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 470 ~~~~~~~~-~i-----~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+...+.. .+ ....|.+||.|+++||+|||+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 171 GVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred EEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 33222211 11 134688999999999999998664
No 50
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=99.10 E-value=4.1e-11 Score=122.14 Aligned_cols=84 Identities=25% Similarity=0.679 Sum_probs=68.9
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|..|.|. .+||.++.. .....+.+.+|.++|++|+.|+.+|
T Consensus 129 ~~C~hC~nP~Cv-------------~aCPtgAI~---------------------k~eedGiV~ID~ekCiGCg~Cv~AC 174 (321)
T TIGR03478 129 RICNHCTNPACL-------------AACPTGAIY---------------------KREEDGIVLVDQERCKGYRYCVEAC 174 (321)
T ss_pred ccCCCCCCccch-------------hhCCcCcEE---------------------EecCCCeEEECHHHCcchHHHHHhC
Confidence 479999999997 789987642 1122356789999999999999999
Q ss_pred cccceecccccceeecccCCccc---------cchhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~C---------g~Cv~~CP~~AI~~~~~~ 505 (582)
|++|+.+... .....+|++| +.|+++||++|+.+...+
T Consensus 175 PygAi~~n~~---~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdld 221 (321)
T TIGR03478 175 PYKKVYFNPQ---SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYLD 221 (321)
T ss_pred CCCCcEecCC---CCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeCC
Confidence 9999987643 3567899999 799999999999997764
No 51
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.07 E-value=8.5e-11 Score=132.13 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=87.9
Q ss_pred cccccccccccccccccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccC---CCC
Q psy9414 366 LKLIFPKKHAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG---NEK 442 (582)
Q Consensus 366 l~~~~~~d~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~ 442 (582)
+...+..+.+.-.|.+ -+...|.||+.+|++|..+|.|.||.++-.+|+...++..... ...
T Consensus 70 M~I~T~s~~vk~~R~~---------------vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~ 134 (693)
T COG1034 70 MVISTNSEEVKKAREG---------------VMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKD 134 (693)
T ss_pred eEEecCCHHHHHHHHH---------------HHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCccccccccccccccc
Confidence 3334455566666662 6788899999999999999999999999999998887755322 122
Q ss_pred Ccccceeccccccccchhhhcccccc----eecccccce----ee-c-ccCCccccchhhcCccCceeeeec
Q psy9414 443 SRCCAIIKENKCIGCTLCIQSCPVDA----IIGAAKHMH----TI-F-SKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 443 ~~~~~~id~~~Ci~Cg~Cv~~CP~~a----i~~~~~~~~----~i-~-~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+.+..|+++||.|++||++|-.-+ |.+..++.. .+ + ...=.+||.|+++||+|||+....
T Consensus 135 ~gp~v~~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~ 206 (693)
T COG1034 135 LGPLVKYDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF 206 (693)
T ss_pred ccchhhcccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH
Confidence 33344489999999999999999633 222212110 00 0 111268999999999999987765
No 52
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=99.06 E-value=6.1e-11 Score=91.13 Aligned_cols=47 Identities=38% Similarity=0.958 Sum_probs=32.7
Q ss_pred cccccchhhhcccccceecccccceee--------cccCCccccchhhcCccCce
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKHMHTI--------FSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i--------~~~~C~~Cg~Cv~~CP~~AI 499 (582)
+|++||.|+.+||++++.+...+.... +...|++||.|+++||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 699999999999999998765443222 22489999999999999998
No 53
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.04 E-value=1.4e-10 Score=122.46 Aligned_cols=134 Identities=25% Similarity=0.449 Sum_probs=91.6
Q ss_pred CCceEEEEEEEcccccc--------c-ccccccccccc--ccccc-cCCcCCCCCchhHHHHHHcccccCCCCCCCchHH
Q psy9414 352 PNSKKVISAYLEPNLKL--------I-FPKKHAQFEQN--LLPQT-QCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKG 419 (582)
Q Consensus 352 p~Sl~v~~~~vep~l~~--------~-~~~d~~QfeR~--glp~~-~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~ 419 (582)
+.+++++...++|.-.. + ...+.|-.+.+ +.|+. .-.+....||.+..+.|....++ +...
T Consensus 464 ~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~siaq-------a~aA 536 (622)
T COG1148 464 EADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADSIAQ-------AKAA 536 (622)
T ss_pred ccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHHHHH-------hHHH
Confidence 55788887667774322 1 22344555554 67765 67777778876554444433222 3333
Q ss_pred HHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCce
Q psy9414 420 IIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 420 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
..+.+..++...... .+....+|+++|+||+.|++ ||++||+.+ + ..++...|.+||.|..+||.+||
T Consensus 537 A~kA~~~l~~g~~~~--------~~~~a~vde~~C~gC~~C~~-Cpf~ais~~-k--a~v~~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 537 AAKAAQLLGRGEVEL--------EPFVATVDEDKCTGCGICAE-CPFGAISVD-K--AEVNPLRCKGCGICSAACPSGAI 604 (622)
T ss_pred HHHHHHHhhcCceee--------cccccccchhhhcCCcceee-CCCCceecc-c--cccChhhhCcccchhhhCCcccc
Confidence 445555555443333 22345789999999999999 999999987 3 67899999999999999999999
Q ss_pred eeeec
Q psy9414 500 SMIEV 504 (582)
Q Consensus 500 ~~~~~ 504 (582)
.+..+
T Consensus 605 ~~~~f 609 (622)
T COG1148 605 DLAGF 609 (622)
T ss_pred hhccc
Confidence 88754
No 54
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=99.03 E-value=1.3e-10 Score=115.68 Aligned_cols=84 Identities=24% Similarity=0.685 Sum_probs=66.4
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. .+||.++.. .+...+.+.+|.++|++|+.|+.+|
T Consensus 92 ~~C~~C~~~~Cv-------------~~CP~gAi~---------------------~~~~~g~v~id~~~C~~C~~C~~aC 137 (225)
T TIGR03149 92 KSCQHCDNAPCV-------------AVCPTGASF---------------------KDEETGIVDVHKDLCVGCQYCIAAC 137 (225)
T ss_pred hhccCCcCcChH-------------hhCCCCcEE---------------------EeCCCCeEEechhhCCcchHHHHhC
Confidence 479999998897 789987642 0112345678999999999999999
Q ss_pred cccceecccccceeecccCCcccc----------chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCD----------LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg----------~Cv~~CP~~AI~~~~~~ 505 (582)
|++|+.+... ..+..+|++|+ .|+++||++||.+.+..
T Consensus 138 P~~A~~~~~~---~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~ 185 (225)
T TIGR03149 138 PYRVRFIHPV---TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLN 185 (225)
T ss_pred CCCCcEecCC---CCccccCCCCCcchhhCCCCCcccccCccCCEEEeccc
Confidence 9999876432 23567999998 79999999999998643
No 55
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.03 E-value=9.9e-11 Score=96.64 Aligned_cols=59 Identities=36% Similarity=0.840 Sum_probs=52.6
Q ss_pred cceeccccccccchhhhcccccceeccccccee-ecccCCccccchhhcCccCceeeeec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHT-IFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~-i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+++|.++|+.|+.|...||.++|....++... ++.+.|.+||.|+++||++||.|...
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred eeEEcccccccCceeEEECCchheeeccCCccceeEcccccCceechhhCChhheEeEee
Confidence 457899999999999999999999877666555 89999999999999999999999864
No 56
>PRK09898 hypothetical protein; Provisional
Probab=99.02 E-value=1.3e-10 Score=114.24 Aligned_cols=83 Identities=29% Similarity=0.746 Sum_probs=65.7
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. .+||.++.. .+...+.+.+|.++|++|+.|+.+|
T Consensus 121 ~~C~~C~~~~C~-------------~~CP~gAi~---------------------~~~~~g~v~vd~~~CigC~~C~~aC 166 (208)
T PRK09898 121 DTCRQCKEPQCM-------------NVCPIGAIT---------------------WQQKEGCITVDHKRCIGCSACTTAC 166 (208)
T ss_pred ccCCCccCcchh-------------hhCCcceEE---------------------eeccCCeEEeccccCCCcCcccccC
Confidence 379999999997 789877532 0111245678999999999999999
Q ss_pred cccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
|++++.++... .+..+|++||.|+++||++||.+.+.
T Consensus 167 P~~ai~~~~~~---~~~~kC~~Cg~Cv~~CP~~Ai~~~~~ 203 (208)
T PRK09898 167 PWMMATVNTES---KKSSKCVLCGECANACPTGALKIIEW 203 (208)
T ss_pred CCCCCEecCCC---CcCCcCcChHHHHHhCCcccEEEecH
Confidence 99999875432 34679999999999999999998754
No 57
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=99.01 E-value=1.4e-10 Score=116.46 Aligned_cols=83 Identities=25% Similarity=0.681 Sum_probs=67.3
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|..|.|. ..||.++.. ....+.+.+|.++|++|+.|+.+|
T Consensus 98 ~~C~~C~~p~Cv-------------~~CP~~Ai~----------------------~~~~G~v~id~~~CigC~~Cv~aC 142 (244)
T PRK14993 98 RLCNHCDNPPCV-------------PVCPVQATF----------------------QREDGIVVVDNKRCVGCAYCVQAC 142 (244)
T ss_pred hhcCCcCCccCc-------------cccCCCCEE----------------------ECCCCCEEEcHHHCCCHHHHHHhc
Confidence 489999999997 789977531 112346788999999999999999
Q ss_pred cccceecccccceeecccCCcccc---------chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~~~ 505 (582)
|++||.+... .....+|++|+ .|+++||++||.+.+..
T Consensus 143 P~~Ai~~~~~---~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~ 189 (244)
T PRK14993 143 PYDARFINHE---TQTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIK 189 (244)
T ss_pred CCCCCEEeCC---CCCcccCcCCcchhhCCCCcccchhcccCCEEEcccc
Confidence 9999987654 24568999997 89999999999987654
No 58
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.97 E-value=3.3e-10 Score=117.93 Aligned_cols=85 Identities=21% Similarity=0.562 Sum_probs=67.3
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
.+|.+|+.+.|. ..||.++.. .+...+.+.+|.++|++|+.|+.+|
T Consensus 110 ~~C~hC~~p~Cv-------------~aCP~gAi~---------------------k~~~~g~V~id~dkCigCg~Cv~aC 155 (328)
T PRK10882 110 KQCMHCVDPNCV-------------SVCPVSALT---------------------KDPKTGIVHYDKDVCTGCRYCMVAC 155 (328)
T ss_pred ccCCCcCchhhH-------------hhCCCCCEE---------------------ecccCCcccCCHHHcCcccHHHHhC
Confidence 379999999997 789987642 1112356788999999999999999
Q ss_pred cccceecccccceeecccCCccccc-------------hhhcCccCceeeeec
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCDL-------------CIKKCPVNCISMIEV 504 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg~-------------Cv~~CP~~AI~~~~~ 504 (582)
|+++|.+..+.. .....+|++|+. |+++||++||.+.+.
T Consensus 156 P~gai~~~~~~~-~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~ 207 (328)
T PRK10882 156 PFNVPKYDYNNP-FGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTR 207 (328)
T ss_pred Cccceecccccc-ccceeecccccccchhhhhcCCCChhhhhccccceEeccH
Confidence 999998764322 245578999998 999999999988653
No 59
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=98.97 E-value=3.5e-10 Score=101.49 Aligned_cols=64 Identities=23% Similarity=0.691 Sum_probs=53.8
Q ss_pred CCCcccceeccccccccchhhhcccccceecccc-cceeecccCCccccchhhcCccCceeeeec
Q psy9414 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 441 ~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
...++.+.++.++|++|+.|+.+||.+++..... ....++...|++||.|+.+||++||.+...
T Consensus 31 ~~~~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 31 EDFRGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred ccccceEEECcccCcCcccHHHHCCccceEccccccceEecCCcCcChhhhHHhCCcCcEEeccc
Confidence 3456788999999999999999999999876533 234567789999999999999999998763
No 60
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.97 E-value=2.3e-10 Score=106.73 Aligned_cols=87 Identities=26% Similarity=0.733 Sum_probs=66.7
Q ss_pred cccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhh
Q psy9414 382 LPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCI 461 (582)
Q Consensus 382 lp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv 461 (582)
.....|.||..++|. ++||+++.. ...+.+.+|.++|+||++|+
T Consensus 48 ~~pv~C~qCedaPC~-------------~vCP~~AI~-----------------------~~~~~v~V~~ekCiGC~~C~ 91 (165)
T COG1142 48 SAPVVCHHCEDAPCA-------------EVCPVGAIT-----------------------RDDGAVQVDEEKCIGCKLCV 91 (165)
T ss_pred ccCCcCCCCCCcchh-------------hhCchhhee-----------------------ecCCceEEchhhccCcchhh
Confidence 345589999999997 899998752 12567899999999999999
Q ss_pred hcccccceecccccc-eeecccCCccc------cchhhcCccCceeeeec
Q psy9414 462 QSCPVDAIIGAAKHM-HTIFSKLCTGC------DLCIKKCPVNCISMIEV 504 (582)
Q Consensus 462 ~~CP~~ai~~~~~~~-~~i~~~~C~~C------g~Cv~~CP~~AI~~~~~ 504 (582)
.+||+|+|.+..... ..-...+|..| ++|+++||++|+.+.+.
T Consensus 92 ~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~ 141 (165)
T COG1142 92 VACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDE 141 (165)
T ss_pred hcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccH
Confidence 999999998865300 01123467666 46999999999998764
No 61
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=98.95 E-value=2.3e-10 Score=97.42 Aligned_cols=58 Identities=29% Similarity=0.691 Sum_probs=47.7
Q ss_pred ccceeccccccccchhhhcccccceecccc--------------c-----ceeecccCCccccchhhcCccCceeee
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAK--------------H-----MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~--------------~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..+.+|.++|++|+.|+.+||.++|.+... . ...++...|++||.|+.+||++||.+.
T Consensus 14 ~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 14 FVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred eeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 356789999999999999999999876420 0 124678899999999999999999874
No 62
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.95 E-value=5.5e-10 Score=114.14 Aligned_cols=83 Identities=33% Similarity=0.678 Sum_probs=65.2
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCC-CchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPT-GGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 463 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~ 463 (582)
.+|.||+.+.|. .+||. ++.. ....+.+.+|.++|++|+.|+.+
T Consensus 91 ~~C~hC~~p~Cv-------------~aCP~~gA~~----------------------~~~~G~V~id~dkCigC~~Cv~a 135 (283)
T TIGR01582 91 DGCMHCREPGCL-------------KACPAPGAII----------------------QYQNGIVDFDHSKCIGCGYCIVG 135 (283)
T ss_pred ccCCCCCCcccc-------------CCCCcCCeEE----------------------EcCCCcEEEeHHHCCcchHHHhh
Confidence 369999999997 78997 3321 11345678999999999999999
Q ss_pred ccccceecccccceeecccCCccc---------cchhhcCccCceeeeecC
Q psy9414 464 CPVDAIIGAAKHMHTIFSKLCTGC---------DLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 464 CP~~ai~~~~~~~~~i~~~~C~~C---------g~Cv~~CP~~AI~~~~~~ 505 (582)
||++++.++... ....+|.+| ..|+.+||++||.+...+
T Consensus 136 CP~~a~~~~~~~---~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~ 183 (283)
T TIGR01582 136 CPFNIPRYDKVD---NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKE 183 (283)
T ss_pred CCCCCcEEcCCC---CChhhhcccccccccCCCChHhCcccHhhEEECCHH
Confidence 999999875432 234689999 489999999999998643
No 63
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=98.94 E-value=5.2e-10 Score=107.47 Aligned_cols=65 Identities=22% Similarity=0.537 Sum_probs=54.0
Q ss_pred CCCCcccceeccccccccchhhhcccccceeccccc-----ceeecccCCccccchhhcCccCceeeeec
Q psy9414 440 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 440 ~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+..+|.+.+|.++|++|+.|+.+||.+||.+..+. ...++...|++||.|+++||++||.+...
T Consensus 26 p~~~rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~ 95 (181)
T PRK08222 26 SPGFRGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNN 95 (181)
T ss_pred CCCccCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccc
Confidence 345677889999999999999999999999865321 13466789999999999999999998764
No 64
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.93 E-value=4.5e-10 Score=98.28 Aligned_cols=58 Identities=29% Similarity=0.732 Sum_probs=51.0
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+.+|.++|++|+.|+.+||.++|.....+...++...|++|+.|+.+||.+||.+..
T Consensus 45 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 45 MPEFNRDKCVRCYLCYIYCPEPAIYLDEEGYPVFDYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEEEChhHCcChhhHHhhCCHhhEEecCCCcEEECchhCCCcCchhhhcCcCcEEEec
Confidence 4578999999999999999999998765555567889999999999999999998864
No 65
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=98.92 E-value=6.7e-10 Score=91.76 Aligned_cols=58 Identities=33% Similarity=0.757 Sum_probs=50.5
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+.++.++|++|+.|+.+||.+++.....+...++...|.+|+.|+.+||++||.+..
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~~~~~~~i~~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQEDEGGFVGIDYDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEecCCCcEEecCccCcCccchhhhCCccccEecc
Confidence 4578899999999999999999988755444567888999999999999999998864
No 66
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=98.90 E-value=7.6e-10 Score=96.91 Aligned_cols=60 Identities=30% Similarity=0.767 Sum_probs=51.7
Q ss_pred ccceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+.++.++|++|+.|+.+||.+++.....+...++...|.+||.|+.+||++||.+...
T Consensus 44 ~~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 44 FMPVVDESKCVKCYICWKFCPEPAIYIKEDGYVAIDYDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eeEEECcccCccccchhhhCCHhheEecCCCcEEeCchhCcCcchhhhhcCcCcEEeccc
Confidence 356789999999999999999999876544545788899999999999999999988753
No 67
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=98.90 E-value=1.1e-09 Score=105.30 Aligned_cols=65 Identities=31% Similarity=0.664 Sum_probs=52.1
Q ss_pred CCCcccceeccccccccchhhhcccccceeccc----------ccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAA----------KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 441 ~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~----------~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+..++.+.++.++|++||.|+.+||.+++.... .....++...|++||.|+++||++||.+....
T Consensus 51 ~~~rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~ 125 (183)
T TIGR00403 51 ERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEY 125 (183)
T ss_pred ccccceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeeccccc
Confidence 345678889999999999999999999864321 01234677899999999999999999997654
No 68
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=98.90 E-value=7.7e-10 Score=100.95 Aligned_cols=58 Identities=29% Similarity=0.702 Sum_probs=49.0
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+.++.++|++|+.|+.+||.++|.........++...|++||.|+.+||++|+.+.-
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~vCP~~a~~l~~ 110 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRDKKLKGVDYSHCKGCGVCVEVCPTNPKSLLM 110 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecCCceEEeCcCcCcChhHHHHHCCcCceEEEe
Confidence 4578999999999999999999987654444457788999999999999999976543
No 69
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.88 E-value=1.3e-09 Score=105.01 Aligned_cols=84 Identities=25% Similarity=0.738 Sum_probs=64.4
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. ..||.++.. ...+.+.++.++|++|+.|+.+|
T Consensus 56 ~~C~~C~~~~C~-------------~~Cp~~ai~-----------------------~~~~~v~i~~~~C~~C~~C~~~C 99 (181)
T PRK10330 56 TVCRQCEDAPCA-------------NVCPNGAIS-----------------------RDKGFVHVMQERCIGCKTCVVAC 99 (181)
T ss_pred CcCcCcCCcHHH-------------HHcCcccEE-----------------------ccCCeEEeChhhCCCcchhhhhC
Confidence 589999998887 678876531 01234677999999999999999
Q ss_pred cccceecccccc------------eeecccCCcccc------chhhcCccCceeeeec
Q psy9414 465 PVDAIIGAAKHM------------HTIFSKLCTGCD------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 465 P~~ai~~~~~~~------------~~i~~~~C~~Cg------~Cv~~CP~~AI~~~~~ 504 (582)
|++||.+..... ..++..+|..|+ .|+++||++||.+.+.
T Consensus 100 P~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 100 PYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred CccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 999997642110 134457899998 8999999999998753
No 70
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=98.87 E-value=1.2e-09 Score=95.28 Aligned_cols=62 Identities=21% Similarity=0.625 Sum_probs=50.5
Q ss_pred Ccccceeccccccccchhhhcccccceeccccc-------ceeecccCCccccchhhcCccCceeeeec
Q psy9414 443 SRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-------MHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 443 ~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~-------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
....+.++.++|++|+.|+.+||.++|.+.... ...++...|++|+.|+.+||++||.+...
T Consensus 7 ~~~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~~ 75 (103)
T PRK09626 7 DNTPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHPESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred CCCCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeCCccCCCcCcchhhCChhhEEEecc
Confidence 345678899999999999999999998764321 12466789999999999999999988754
No 71
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=98.86 E-value=1.5e-09 Score=104.43 Aligned_cols=64 Identities=23% Similarity=0.559 Sum_probs=53.4
Q ss_pred CCCcccceeccccccccchhhhcccccceeccccc-----ceeecccCCccccchhhcCccCceeeeec
Q psy9414 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 441 ~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+..++.+.+|.++|++|+.|+.+||.++|....+. ...++...|++||.|+.+||++||.+...
T Consensus 27 ~~~rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~ 95 (180)
T PRK12387 27 KNFRGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95 (180)
T ss_pred CCCCCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCc
Confidence 44567889999999999999999999999865321 12467889999999999999999998754
No 72
>KOG3256|consensus
Probab=98.86 E-value=8.7e-10 Score=100.36 Aligned_cols=61 Identities=31% Similarity=0.554 Sum_probs=50.5
Q ss_pred cceeccccccccchhhhcccccceeccccc---------ceeecccCCccccchhhcCccCceeeeecCc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKH---------MHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~---------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 506 (582)
......++||.|..|+.+||.++|.++.+. ...||..+|+.||.|+++||++||...+.+.
T Consensus 105 Ryp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegpnfE 174 (212)
T KOG3256|consen 105 RYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 174 (212)
T ss_pred cCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceeccCCce
Confidence 344567899999999999999999876321 2457889999999999999999999887653
No 73
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.84 E-value=1.8e-09 Score=86.89 Aligned_cols=58 Identities=29% Similarity=0.690 Sum_probs=50.4
Q ss_pred ceeccccccccchhhhcccccceeccc---ccceeecccCCccccchhhcCccCceeeeec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA---KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~---~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+.+|.++|++|+.|+.+||.+.+.... .....++.+.|++||.|+.+||++||.+...
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred eEECchhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcceEEEecc
Confidence 468899999999999999999988764 3446778999999999999999999988754
No 74
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.84 E-value=8.7e-10 Score=83.79 Aligned_cols=46 Identities=39% Similarity=0.950 Sum_probs=30.7
Q ss_pred cccccchhhhcccccceecccc------cceeecccCCccccchhhcCccCc
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAK------HMHTIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~------~~~~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
+|++||.|+.+||+++|.+... ....++.+.|++||.|+.+||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 5999999999999999976532 234678899999999999999987
No 75
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.82 E-value=1.9e-09 Score=101.79 Aligned_cols=84 Identities=27% Similarity=0.773 Sum_probs=65.7
Q ss_pred cccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhc
Q psy9414 384 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 463 (582)
Q Consensus 384 ~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~ 463 (582)
.+.|.+|+.+.|. ..||.++.. .+...+.+.++.++|++|+.|+.+
T Consensus 61 ~~~C~~C~~~~C~-------------~~CP~~ai~---------------------~~~~~~~~~i~~~~C~~C~~C~~a 106 (161)
T TIGR02951 61 SISCNHCADPACV-------------KNCPTGAMY---------------------KREEDGLVLVDQDKCIGCRYCVWA 106 (161)
T ss_pred CccCCCcCCcchH-------------HhCCCCCEE---------------------eecCCCcEEECHHhCCCchHHHhh
Confidence 3579999999997 688876531 011234567899999999999999
Q ss_pred ccccceecccccceeecccCCcccc---------chhhcCccCceeeeec
Q psy9414 464 CPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 464 CP~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~~ 504 (582)
||+++|.+.... ....+|++|+ .|+++||++||.+.+.
T Consensus 107 CP~~ai~~~~~~---~~~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~ 153 (161)
T TIGR02951 107 CPYGAPQYDPQQ---GVMGKCDGCYDRVEKGLRPACVDACPMRALDFGPI 153 (161)
T ss_pred CCCCCcEEcCCC---CccccCCCCHHHHHCCCCCcchhhccccceEEecH
Confidence 999999875432 3456999997 8999999999998754
No 76
>CHL00065 psaC photosystem I subunit VII
Probab=98.81 E-value=1.9e-09 Score=89.85 Aligned_cols=58 Identities=28% Similarity=0.669 Sum_probs=46.4
Q ss_pred eeccccccccchhhhcccccceecccc-----cc--eeecccCCccccchhhcCccCceeeeecC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAK-----HM--HTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-----~~--~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.++.++|++|+.|+.+||++++.+... .. ..++...|++|+.|+.+||++||.+..+.
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~ 69 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYL 69 (81)
T ss_pred cCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEEe
Confidence 456789999999999999998876431 11 23455799999999999999999987654
No 77
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=98.81 E-value=3.7e-09 Score=100.18 Aligned_cols=63 Identities=30% Similarity=0.579 Sum_probs=51.3
Q ss_pred Ccccceeccc-----cccccchhhhcccccceecccc----c-----ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 443 SRCCAIIKEN-----KCIGCTLCIQSCPVDAIIGAAK----H-----MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 443 ~~~~~~id~~-----~Ci~Cg~Cv~~CP~~ai~~~~~----~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.++.+.++.+ +|++|+.|+.+||.++|.+... + ...++...|++||.|+.+||++||.+....
T Consensus 44 ~~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 120 (164)
T PRK05888 44 FRGRHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDF 120 (164)
T ss_pred cCCEEeecCCCCCCccCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcc
Confidence 3567778888 9999999999999999876431 1 134678899999999999999999987654
No 78
>PLN00071 photosystem I subunit VII; Provisional
Probab=98.79 E-value=2.7e-09 Score=88.88 Aligned_cols=58 Identities=28% Similarity=0.687 Sum_probs=46.3
Q ss_pred ceeccccccccchhhhcccccceecccc-c-----c-eeecccCCccccchhhcCccCceeeeec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAK-H-----M-HTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~-----~-~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+.++.++|++|+.|+++||.++|.+... + . ...+...|++||.|+.+||++||.+...
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 4667889999999999999999876421 1 0 1235678999999999999999998654
No 79
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.79 E-value=2.3e-09 Score=81.45 Aligned_cols=48 Identities=40% Similarity=0.958 Sum_probs=24.5
Q ss_pred ceeccccccccchhhhcccc---cceecccccceeecccCCccccchhhcCc
Q psy9414 447 AIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCTGCDLCIKKCP 495 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~---~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP 495 (582)
+.+|.++|++||.|+++||. .++... .....++..+|++||.|+++||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~-~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDG-EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE--SSSEEE-TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhcc-CCCeEeCcccccccChhhhhCc
Confidence 47899999999999999998 333332 3345678999999999999999
No 80
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.78 E-value=2.5e-09 Score=91.91 Aligned_cols=57 Identities=40% Similarity=0.867 Sum_probs=48.6
Q ss_pred eeccccccccchhhhcccccceecccc----cceeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAK----HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~----~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.++.++|++||.|+.+||++||.+... ....++...|+.||.|+.+||++||.+...
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEccccCccccchHhhCCcCCeehhhc
Confidence 678899999999999999999987432 345677899999999999999999887654
No 81
>PRK06273 ferredoxin; Provisional
Probab=98.77 E-value=2.5e-09 Score=100.88 Aligned_cols=56 Identities=30% Similarity=0.540 Sum_probs=46.8
Q ss_pred cceeccccccccchhhhcccccceecccc------------cceeecccCCccccchhhcCccCceee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAK------------HMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~------------~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
...++.+.|++||.|+.+||.+||.+... ....++...|++||.|+.+||++||..
T Consensus 43 ~~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 43 PKKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CCeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheec
Confidence 34678999999999999999999987531 124567899999999999999999954
No 82
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=98.77 E-value=5e-09 Score=99.47 Aligned_cols=64 Identities=33% Similarity=0.683 Sum_probs=50.0
Q ss_pred CCcccceeccccccccchhhhcccccceecccc----------cceeecccCCccccchhhcCccCceeeeecC
Q psy9414 442 KSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 442 ~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~----------~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
..++.+.++.++|++||.|+.+||.+++..... ....++...|++||.|+++||++||.+....
T Consensus 49 ~~rg~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~ 122 (167)
T CHL00014 49 RFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEY 122 (167)
T ss_pred CcCCeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCcc
Confidence 345677789999999999999999987643211 0123566789999999999999999987654
No 83
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.76 E-value=2.7e-09 Score=106.19 Aligned_cols=60 Identities=30% Similarity=0.601 Sum_probs=53.6
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.+.+|.++|+.||.|.++|+++||....++...+++..|.+||.|.-+||.+||.+.+..
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~ 122 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVV 122 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccce
Confidence 567899999999999999999999876666678889999999999999999999987654
No 84
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.75 E-value=3.9e-09 Score=95.89 Aligned_cols=59 Identities=27% Similarity=0.626 Sum_probs=50.1
Q ss_pred ceeccccccccc-----hhhhcccccceeccccc--ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg-----~Cv~~CP~~ai~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.++.++|++|+ .|+.+||.++|..+... ...++...|++|+.|+.+||++||.+....
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~ 68 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEPDMCWECYSCVKACPQGAIDVRGYA 68 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCchhCccHHHHHHhCCcCceEEECcc
Confidence 367899999999 99999999999876542 235778999999999999999999987543
No 85
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=98.73 E-value=6.2e-09 Score=93.61 Aligned_cols=63 Identities=35% Similarity=0.676 Sum_probs=49.5
Q ss_pred Ccccceecc-----ccccccchhhhcccccceecccc----c-----ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 443 SRCCAIIKE-----NKCIGCTLCIQSCPVDAIIGAAK----H-----MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 443 ~~~~~~id~-----~~Ci~Cg~Cv~~CP~~ai~~~~~----~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.++.+.++. ++|++|+.|+.+||.+++..... + ...++...|.+||.|+.+||++||.+....
T Consensus 29 ~~g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~ 105 (122)
T TIGR01971 29 FRGRIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEF 105 (122)
T ss_pred cCCeEeeccCCCCcCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCcccccccee
Confidence 345566666 99999999999999988765421 1 134577899999999999999999987653
No 86
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.71 E-value=8.9e-09 Score=101.48 Aligned_cols=92 Identities=26% Similarity=0.707 Sum_probs=64.7
Q ss_pred cCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceecccccc-----ccchh
Q psy9414 386 QCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCI-----GCTLC 460 (582)
Q Consensus 386 ~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci-----~Cg~C 460 (582)
.|.+|+.+.|. ..||.++...... ... .......+.+|.++|+ +|+.|
T Consensus 92 ~C~~C~d~~Cv-------------~~CP~~Ai~~~~~---~~~-----------~~~~g~av~id~~~C~~~~g~~C~~C 144 (213)
T TIGR00397 92 PCRMCKDIPCA-------------RACPTGALDPLLT---DIR-----------KADMGVAVLVGHETCLNYKGLNCSIC 144 (213)
T ss_pred cCCCCCCchHH-------------hHcCHhhhchhhh---ccc-----------cccCceEEEECCCCcccCCCCCcccc
Confidence 59999877776 6899887532110 000 0011123467899998 99999
Q ss_pred hhcccc--cceecccc-------cceeecccCCccccchhhcCccC--ceeeeec
Q psy9414 461 IQSCPV--DAIIGAAK-------HMHTIFSKLCTGCDLCIKKCPVN--CISMIEV 504 (582)
Q Consensus 461 v~~CP~--~ai~~~~~-------~~~~i~~~~C~~Cg~Cv~~CP~~--AI~~~~~ 504 (582)
+++||+ +||.+... ....++.++|++||.|+++||++ ||.+...
T Consensus 145 ~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 145 VRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred hhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 999999 68876421 23567899999999999999987 7877654
No 87
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=98.68 E-value=9.8e-09 Score=85.34 Aligned_cols=57 Identities=28% Similarity=0.682 Sum_probs=45.4
Q ss_pred eeccccccccchhhhcccccceecccc-c----c--eeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAK-H----M--HTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~----~--~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+.+.++|++|+.|+++||.+++..... + . ..++...|++||.|+++||++||.+...
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVY 67 (80)
T ss_pred eecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEEe
Confidence 557789999999999999998876531 1 1 1235578999999999999999988643
No 88
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.67 E-value=6.5e-09 Score=107.70 Aligned_cols=61 Identities=28% Similarity=0.698 Sum_probs=50.2
Q ss_pred cccceeccccccccchhhhcccccceecc----cccceeecccCCccccchhhcCccCceeeeec
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVDAIIGA----AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~----~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+.+.+|.++|++||.|+.+||++++.+. ......++...|++||.|+.+||++||.+...
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~ 104 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELADGRNRIIIRREKCTHCGKCTEACPSGALSIVGE 104 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccCCCcceeechhhcCchhHhhccCcHhHHhhhcc
Confidence 34678899999999999999999998621 22235677889999999999999999988643
No 89
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.63 E-value=1.9e-08 Score=115.48 Aligned_cols=86 Identities=22% Similarity=0.673 Sum_probs=67.1
Q ss_pred cccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhc
Q psy9414 384 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 463 (582)
Q Consensus 384 ~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~ 463 (582)
...|.+|+.+.|. ..||.++... ..+.+.+|.++|++|+.|+.+
T Consensus 53 ~~~C~~C~~~~C~-------------~~CP~~ai~~-----------------------~~~~~~id~~~C~~C~~C~~~ 96 (654)
T PRK12769 53 AVTCHHCEDAPCA-------------RSCPNGAISH-----------------------VDDSIQVNQQKCIGCKSCVVA 96 (654)
T ss_pred CccCCCCCChhHh-------------hhCCccceec-----------------------cCCeEEEecccccCcChhccc
Confidence 4589999988897 7899775320 112457899999999999999
Q ss_pred ccccceecccccc----eeecccCCcccc------chhhcCccCceeeeecC
Q psy9414 464 CPVDAIIGAAKHM----HTIFSKLCTGCD------LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 464 CP~~ai~~~~~~~----~~i~~~~C~~Cg------~Cv~~CP~~AI~~~~~~ 505 (582)
||++++.+..... ...+..+|..|+ .|+.+||++||.+.+.+
T Consensus 97 CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~ 148 (654)
T PRK12769 97 CPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQ 148 (654)
T ss_pred CCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHH
Confidence 9999998753321 235567999998 99999999999997643
No 90
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.60 E-value=2.2e-08 Score=94.80 Aligned_cols=50 Identities=34% Similarity=0.680 Sum_probs=42.1
Q ss_pred ccccchhhhcccccceecccc--c--ceeecccCCccccchhhcCccCceeeee
Q psy9414 454 CIGCTLCIQSCPVDAIIGAAK--H--MHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~ai~~~~~--~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
|++|+.|+++||.+||.+... + ...++.+.|++||.|+++||++||.+..
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeCcccCcCcchhhhhCCccceEecc
Confidence 379999999999999987532 2 2367889999999999999999999864
No 91
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=98.60 E-value=1.8e-08 Score=103.09 Aligned_cols=56 Identities=23% Similarity=0.579 Sum_probs=44.6
Q ss_pred eccccccccchhhhcccccceec---ccccce-eecccCCccccchhhcCccCceeeeec
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIG---AAKHMH-TIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~---~~~~~~-~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+|.++|++|+.|+++||++++.. ...... .++...|+.||.|+++||++||++...
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence 78999999999999999987543 111111 367789999999999999999998653
No 92
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.59 E-value=2.7e-08 Score=108.30 Aligned_cols=75 Identities=33% Similarity=0.720 Sum_probs=55.6
Q ss_pred cccceeccccccccchhhhccccc---ceeccc--ccceeecccCCccccchhhcCcc-CceeeeecCccccchhhhhhh
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVD---AIIGAA--KHMHTIFSKLCTGCDLCIKKCPV-NCISMIEVTPCRTGWDAWSQK 517 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~---ai~~~~--~~~~~i~~~~C~~Cg~Cv~~CP~-~AI~~~~~~~~~~~~~~~~~~ 517 (582)
...+.+|.++|++|+.|+++||.+ +|.+.. .....++...|++||.|+.+||+ +||++...... ..+..|.+.
T Consensus 334 ~~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~~~~-~~~~~~~~~ 412 (420)
T PRK08318 334 IVYARIDQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGEVKFG-KPYANWTTH 412 (420)
T ss_pred ceEEEECHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEeccCCC-cccccccCC
Confidence 345678999999999999999974 666532 22345788999999999999999 99998875442 334445444
Q ss_pred hh
Q psy9414 518 KA 519 (582)
Q Consensus 518 ~~ 519 (582)
+.
T Consensus 413 ~~ 414 (420)
T PRK08318 413 PN 414 (420)
T ss_pred CC
Confidence 33
No 93
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.59 E-value=2.9e-08 Score=82.60 Aligned_cols=58 Identities=28% Similarity=0.683 Sum_probs=45.2
Q ss_pred eeccccccccchhhhcccccceecccc-----cc--eeecccCCccccchhhcCccCceeeeecC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAK-----HM--HTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-----~~--~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
....++|++|+.|+.+||.+++..... +. ...+...|.+|+.|+.+||++||.+....
T Consensus 5 ~~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 69 (81)
T PRK02651 5 VKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 69 (81)
T ss_pred ccccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEEEe
Confidence 345689999999999999998865321 11 12356799999999999999999987554
No 94
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.59 E-value=2.9e-08 Score=100.76 Aligned_cols=53 Identities=25% Similarity=0.585 Sum_probs=42.7
Q ss_pred ccccccccchhhhcccccce-eccc--ccceeecccCCccccchhhcCccCceeee
Q psy9414 450 KENKCIGCTLCIQSCPVDAI-IGAA--KHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai-~~~~--~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
|+++|++|+.|+++||++++ .... .+...++...|+.||.|+++||++||+++
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCccccccc
Confidence 48999999999999999874 3211 12345678899999999999999999874
No 95
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.58 E-value=3.3e-08 Score=99.96 Aligned_cols=56 Identities=30% Similarity=0.847 Sum_probs=46.4
Q ss_pred eecccccc-----ccchhhhcccc--cceeccccc----------ceeecccCCccccchhhcCccC--ceeeee
Q psy9414 448 IIKENKCI-----GCTLCIQSCPV--DAIIGAAKH----------MHTIFSKLCTGCDLCIKKCPVN--CISMIE 503 (582)
Q Consensus 448 ~id~~~Ci-----~Cg~Cv~~CP~--~ai~~~~~~----------~~~i~~~~C~~Cg~Cv~~CP~~--AI~~~~ 503 (582)
.+|.++|+ +|+.|+++||+ +||.+.... ...++.+.|++||.|+.+||++ ||.+..
T Consensus 133 ~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 133 LVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred ecchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEEeh
Confidence 48999999 89999999997 788765321 2467889999999999999998 887654
No 96
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.56 E-value=3.3e-08 Score=85.16 Aligned_cols=58 Identities=28% Similarity=0.662 Sum_probs=44.4
Q ss_pred eeccccccccc--hhhhcccccceeccc-ccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 448 IIKENKCIGCT--LCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 448 ~id~~~Ci~Cg--~Cv~~CP~~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.+....|.+|. .|+++||++||..+. .|...++.++|++|+.|+.+||.+||.+....
T Consensus 3 ~~~~~~C~hC~~ppC~~~CP~~Ai~~~~~~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~ 63 (98)
T PF13247_consen 3 EFVPVQCRHCEDPPCVEACPTGAIYKDPEDGIVVIDEDKCIGCGYCVEACPYGAIRFDPDT 63 (98)
T ss_dssp EEEEEC---BSS-HHHHHCTTTSEEEETTTS-EEE-TTTCCTHHHHHHH-TTS-EEEETTT
T ss_pred eEeCCcCcCcCCCchhhhCCccceEEEcCCCeEEechhhccCchhhhhhhccCcceeeccc
Confidence 45678899996 999999999998775 67788999999999999999999999987643
No 97
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.54 E-value=4e-08 Score=112.42 Aligned_cols=80 Identities=25% Similarity=0.711 Sum_probs=63.1
Q ss_pred cccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhc
Q psy9414 384 QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 463 (582)
Q Consensus 384 ~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~ 463 (582)
...|.+|+.+.|. ..||.++... ..+.+.+|.++|++|+.|+.+
T Consensus 53 ~~~C~~C~~~~C~-------------~~CP~~ai~~-----------------------~~~~v~~d~~~C~gC~~C~~~ 96 (639)
T PRK12809 53 PVACHHCNNAPCV-------------TACPVNALTF-----------------------QSDSVQLDEQKCIGCKRCAIA 96 (639)
T ss_pred CCCCcCcCChhHH-------------hhCCcCceec-----------------------cccceecChhhCcchhhHhhh
Confidence 4589999999997 7899876420 112457889999999999999
Q ss_pred ccccceecccccceeecccCCcccc-------chhhcCccCceeeeec
Q psy9414 464 CPVDAIIGAAKHMHTIFSKLCTGCD-------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 464 CP~~ai~~~~~~~~~i~~~~C~~Cg-------~Cv~~CP~~AI~~~~~ 504 (582)
||+++|.+... ...+|..|+ .|+.+||++||.+.+.
T Consensus 97 CP~~ai~~~~~-----~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~ 139 (639)
T PRK12809 97 CPFGVVEMVDT-----IAQKCDLCNQRSSGTQACIEVCPTQALRLMDD 139 (639)
T ss_pred cCCCCEEccCC-----CcccccCCcccCCCCChhhhhCccceEEEech
Confidence 99999987543 245788887 6999999999999754
No 98
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.54 E-value=3.5e-08 Score=85.81 Aligned_cols=55 Identities=18% Similarity=0.429 Sum_probs=45.8
Q ss_pred eeccccccccchhhhcccccceeccccc--ceeecccCCccccchhhcCccCceeee
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.++.+.|++|+.|+.+||.++|.....+ ...++...|++||.|+.+||++||...
T Consensus 30 ~~~~~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 30 SLFSAVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred ccCcCcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCccccCcC
Confidence 4567899999999999999998876433 235677899999999999999999754
No 99
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.52 E-value=1.3e-08 Score=109.15 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=80.7
Q ss_pred ccccccchhhhcccccceeccc---------ccceeecccCCccccchhhcCccCceeeeecCccccc--h-hhhhhhhh
Q psy9414 452 NKCIGCTLCIQSCPVDAIIGAA---------KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTG--W-DAWSQKKA 519 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai~~~~---------~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~--~-~~~~~~~~ 519 (582)
..|+.|+.|+++||.+.+...- ..........|+.||.|..+||++ |.+.......+. + ...+..++
T Consensus 365 ~sCi~C~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~-iplvq~~r~~Ka~i~~~~~~~~~~ 443 (529)
T COG4656 365 QSCIRCSLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN-IPLVQYFRQEKAEILAQRQELKKA 443 (529)
T ss_pred hccccHHHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC-CCHHHHHHHHHHHHHHhchhhhcc
Confidence 3899999999999997653210 001123456899999999999998 666554322111 1 11222334
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHhhhhhhhcCchhhHHHHHHHHHhHHHhhh
Q psy9414 520 DDARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELKN 575 (582)
Q Consensus 520 ~~ar~~~~~r~~rl~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~ 575 (582)
..++.++..++.|++++++++...+.+++.+.......+...++++|.+|.+++++
T Consensus 444 ~~~~~rf~~~~~rl~~~~a~r~~~~~~~~~~~~~~~~~~~~~~i~~a~~r~~~~k~ 499 (529)
T COG4656 444 EEAKTRFEARTARLEREKAERIPRMKKAAVKRLSFVTAALIDAIAAALERVKEKKA 499 (529)
T ss_pred ccccchhhhhhhhhhhhhhcchHHHHHHHhhhhhhhhhhcccchHHHHHHHHHHHH
Confidence 44667888888888888766666655555443333445566689999999998876
No 100
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.49 E-value=6.4e-08 Score=102.75 Aligned_cols=59 Identities=27% Similarity=0.522 Sum_probs=50.7
Q ss_pred cceeccccccccc--hhhhcccccceecc-cccceeecccCCccccchhhcCccCceeeeec
Q psy9414 446 CAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 446 ~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+.+.+..|++|+ .|+.+||.+||... .++...++.++|++|+.|+.+||++||.+...
T Consensus 175 ~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 175 FMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISGCPYKKIYFNWK 236 (492)
T ss_pred eEEECCCcCcCCCcccchhhCccCCeEEecCCCeEEEehhhccChHHHHHhCCCCCcEecCC
Confidence 4567889999998 99999999999743 34556789999999999999999999998754
No 101
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=98.49 E-value=4.5e-08 Score=102.38 Aligned_cols=58 Identities=38% Similarity=0.813 Sum_probs=45.6
Q ss_pred cceeccccccccchhhhcccccceecccc------------cceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAK------------HMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~------------~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+.+|.++|++|+.|+.+||.+++..... ....++...|.+|+.|+.+||++||.+..
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 45789999999999999999998753110 01223557899999999999999999864
No 102
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=98.47 E-value=6.4e-08 Score=96.97 Aligned_cols=57 Identities=32% Similarity=0.662 Sum_probs=49.2
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+|.++|++|+.|+.+||.+++...... ..++...|.+||.|+.+||.+||.+...
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~~~-~~i~~~~C~~Cg~C~~~CP~~AI~~~~~ 199 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVDGK-AFIRLLKCVGCGKCKEACPYNAIHGGLE 199 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecCCc-eEEchhhCCccchHHhhCCCCceecCCc
Confidence 36788999999999999999999875433 4678889999999999999999988743
No 103
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.45 E-value=9.5e-08 Score=89.32 Aligned_cols=52 Identities=33% Similarity=0.799 Sum_probs=46.0
Q ss_pred cccccc--chhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 452 NKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 452 ~~Ci~C--g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
-.|.+| .-|+++||++||..+ ++...++.++|++||.|+.+||.|||.+...
T Consensus 51 v~C~qCedaPC~~vCP~~AI~~~-~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 51 VVCHHCEDAPCAEVCPVGAITRD-DGAVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred CcCCCCCCcchhhhCchhheeec-CCceEEchhhccCcchhhhcCCcceEEEEee
Confidence 357776 689999999999987 5667889999999999999999999999875
No 104
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=98.42 E-value=4.4e-08 Score=100.25 Aligned_cols=122 Identities=24% Similarity=0.489 Sum_probs=90.6
Q ss_pred cCCCcccccccCCceEEEEEEEcccccccccccccccccccccc--ccCCcCCCCCchhHHHHHHcccccCCCCCCCchH
Q psy9414 341 VNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQ--TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRK 418 (582)
Q Consensus 341 ~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~glp~--~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~ 418 (582)
+++.||.|+|........ -+|++..+...-..||+...+-. ..|.||-.|.|. ..||+++..
T Consensus 138 ewGpNweddLaG~~~~~~---~Dpn~~~i~~~iy~~fe~tFMmYLPRiCeHCLNPsCv-------------asCPsgaiY 201 (513)
T COG1140 138 EWGPNWEDDLAGEFEKRA---KDPNFEKIQKEIYGQFENTFMMYLPRLCEHCLNPSCV-------------ASCPSGAIY 201 (513)
T ss_pred ccCCChhhhccCCccccc---CCcCHHHHHHHHHHHHHhHHHHhhHHHHhhcCCcHHh-------------hcCCccccc
Confidence 447888888876555433 46666666555566777764333 269999999997 689998753
Q ss_pred HHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcccccceecccccceeecccCCcccc---------c
Q psy9414 419 GIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD---------L 489 (582)
Q Consensus 419 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg---------~ 489 (582)
.....|++.+|.++|.|...|+..||+.-+.+..+ ....++|++|- .
T Consensus 202 ---------------------KReEDGIVLiDQd~CRGwR~CvsgCPYKKvYfNwk---sgKsEKCifCyPRiEaGqPtV 257 (513)
T COG1140 202 ---------------------KREEDGIVLIDQDKCRGWRMCVSGCPYKKVYFNWK---SGKSEKCIFCYPRIEAGQPTV 257 (513)
T ss_pred ---------------------ccccCceEEeecccccchhhhhcCCCcceeEeecc---CCCcceeEEeccccccCCCcc
Confidence 23467899999999999999999999998887654 34568999993 5
Q ss_pred hhhcCccCceeeee
Q psy9414 490 CIKKCPVNCISMIE 503 (582)
Q Consensus 490 Cv~~CP~~AI~~~~ 503 (582)
|.+.| +|-|.+..
T Consensus 258 CSeTC-VGriRYlG 270 (513)
T COG1140 258 CSETC-VGRIRYLG 270 (513)
T ss_pred chhhh-hcceeeee
Confidence 88888 56566554
No 105
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=98.40 E-value=8.5e-08 Score=102.69 Aligned_cols=56 Identities=32% Similarity=0.732 Sum_probs=45.5
Q ss_pred ceeccccccccchhhhcccccceecc----cccc---------eeecccCCccccchhhcCccCceeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA----AKHM---------HTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~----~~~~---------~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
+.+|.++|++||+|+++||++++... ..+. ..++...|+.||.|+.+||++||...
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 46899999999999999999998621 1111 23677899999999999999999775
No 106
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.39 E-value=1.4e-07 Score=96.60 Aligned_cols=59 Identities=22% Similarity=0.535 Sum_probs=50.1
Q ss_pred cceeccccccccc--hhhhcccccceecc-cccceeecccCCccccchhhcCccCceeeeec
Q psy9414 446 CAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 446 ~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+.+.+..|.+|+ .|+.+||++||... ..+...++.++|++|+.|+.+||++||.+...
T Consensus 123 ~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~ID~ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 123 YYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred eEEEecccCCCCCCccchhhCCcCcEEEecCCCeEEECHHHCcchHHHHHhCCCCCcEecCC
Confidence 4467889999999 89999999999643 34556789999999999999999999998653
No 107
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.37 E-value=1.2e-07 Score=89.72 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=38.7
Q ss_pred ccccccccchhhhcccccceecccccc--eeecccCCccccchhhcCccCceeee
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGAAKHM--HTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~~~~~--~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
+.++|++||.|+++||.++|.....+. ..++...|++|+.|+.+||++||...
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~ 86 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPR 86 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCCCceeeeecCCCCCCchhhHhhCcchheecc
Confidence 456788888888888888876654432 23456778888888888888887654
No 108
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=98.37 E-value=1.5e-07 Score=94.52 Aligned_cols=54 Identities=33% Similarity=0.831 Sum_probs=47.9
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
.+++.+.+|..||.|++.||.+||... ....|+...|++|+.|.++||++|+..
T Consensus 187 ~p~v~e~kc~~c~~cv~~cp~~Ai~~~--~~~~I~~~~ci~c~~c~~ac~~gav~~ 240 (354)
T COG2768 187 KPVVVEEKCYDCGLCVKICPVGAITLT--KVVKIDYEKCIGCGQCMEACPYGAVDQ 240 (354)
T ss_pred CceeeeecccccchhhhhCCCcceecc--cceeechhhccchhhhhhhccCccccc
Confidence 457788999999999999999999876 345789999999999999999999864
No 109
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.35 E-value=1.8e-07 Score=97.86 Aligned_cols=56 Identities=27% Similarity=0.618 Sum_probs=46.9
Q ss_pred ceeccccccccchhhhcccc---cceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~---~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.+|.++|++|+.|+++||. +++.... ....++...|++||.|+.+||++||....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~-~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFEN-YKVVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccC-CeEEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 36789999999999999996 5566543 34568899999999999999999997664
No 110
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.34 E-value=2.1e-07 Score=100.93 Aligned_cols=55 Identities=31% Similarity=0.837 Sum_probs=47.9
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
+.+|.++|++|+.|+.+||.++|...... ..++...|.+|+.|+.+||++||...
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~~-~~i~~~~C~~C~~C~~~CP~~AI~~~ 59 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDRN-YVVKADVCNGCMACVSPCPTGAIDNW 59 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCCc-eEeCcccCcCHHHHHhhcCcccceec
Confidence 46799999999999999999999876443 46788899999999999999999854
No 111
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.34 E-value=5.8e-07 Score=88.79 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=72.3
Q ss_pred CCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccc---cccccccccCCCcEE--ecCcccccChHHHH
Q psy9414 8 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYD---YAHPISDAIENITHS--ICTLEFQDHRPFYE 82 (582)
Q Consensus 8 ~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~---fa~~vdD~~~githv--ir~~e~~~~~~~~~ 82 (582)
+|..++.+.- .....|.|+.|.+++ |||. +|..++++.+++||+ ++|.||..+.+++.
T Consensus 115 ~g~~~~~~~~-----~~~~~d~vl~rsdG~------------~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~ 177 (212)
T cd00671 115 DGALWLDLTE-----FGDDKDRVLVRSDGT------------YTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLF 177 (212)
T ss_pred CCcEEEechh-----hCCCCCeEEEECCCC------------ccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHH
Confidence 4555555421 124569999999986 8897 799999999999999 99999999999999
Q ss_pred HHHHHcCCCCCCCCC-CCceeEe--ecccCC-Cccccccc
Q psy9414 83 WILNKIDKTNFIKRP-FPKQYEF--SRLNLT-HTITSKRK 118 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~-~p~~~~~--~~l~~~-~~~lSKr~ 118 (582)
.++++||| . .|.+.|. +.+.+. |.+||||+
T Consensus 178 ~~~~~lg~------~~~~~~~h~~~~~v~~~~~~kmS~R~ 211 (212)
T cd00671 178 AALELLGY------DEAKKLEHLLYGMVNLPKEGKMSTRA 211 (212)
T ss_pred HHHHHcCC------CCCCCeEEEEEEeEEcCCCCCCCCCC
Confidence 99999999 4 5666665 677776 88999997
No 112
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.34 E-value=3e-07 Score=97.12 Aligned_cols=57 Identities=26% Similarity=0.623 Sum_probs=48.3
Q ss_pred cccceeccccccccchhh--hcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 444 RCCAIIKENKCIGCTLCI--QSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv--~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
...+.++.++|++|+.|. .+||+++|... ..++...|+.|+.|+.+||.+|+++...
T Consensus 294 ~~~p~id~dkCi~Cg~C~~~~aCPt~AI~~~----~~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 294 DVRPKYNPERCENCDPCLVEEACPVPAIKKD----GTLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred ceeEEEchhhCcCCCCCcCCcCCCHhhEecc----ceeChHhCcChHHHHhhCCccceEEeCC
Confidence 345678999999999995 89999998743 2578889999999999999999998754
No 113
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=98.33 E-value=1.4e-07 Score=95.97 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=44.0
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCcc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 496 (582)
+.+|++.|.+|+.|+++||++||.... ....++.++|++||.|+.+||.
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~-~~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG-KKLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc-ceEEEehhhccCccHHhhhCCh
Confidence 578999999999999999999999875 3457889999999999999993
No 114
>PRK07118 ferredoxin; Validated
Probab=98.30 E-value=3.3e-07 Score=94.07 Aligned_cols=56 Identities=34% Similarity=0.852 Sum_probs=49.3
Q ss_pred eccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
++...|++|+.|+++||.+||.+.+ +...++.++|++||.|+.+||++||.+....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~-~~~vId~~~C~~Cg~C~~~CP~~AI~~~~~~ 265 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPAGAITMEN-NLAVIDQEKCTSCGKCVEKCPTKAIRILNKP 265 (280)
T ss_pred ccccccccchHHHhhCCcCcEEEeC-CcEEEcCCcCCCHHHHHHhCCccccEeeccc
Confidence 4578899999999999999999864 4567899999999999999999999988654
No 115
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=98.29 E-value=3.7e-07 Score=93.11 Aligned_cols=58 Identities=21% Similarity=0.527 Sum_probs=49.4
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.+ .+.|++|+.|+.+||.+++.++.+.....+...|++|+.|+.+||.+||.+....
T Consensus 165 I~i-~~~C~~C~~C~~~CP~~vi~~~~~~~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~~ 222 (263)
T PRK00783 165 IEV-SEDCDECEKCVEACPRGVLELKEGKLVVTDLLNCSLCKLCERACPGKAIRVSDDE 222 (263)
T ss_pred ccc-cccCCchHHHHHhCCccccEecCCeEEEeChhhCCCchHHHHhCCCCceEEEEcC
Confidence 455 7899999999999999999887655445577889999999999999999988754
No 116
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=98.28 E-value=3.9e-07 Score=92.78 Aligned_cols=55 Identities=22% Similarity=0.512 Sum_probs=47.5
Q ss_pred cccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.+.|++|+.|+.+||.+++.++.+.....+...|+.|+.|+.+||++||.+....
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~ 222 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELEEGKVVVEDLEDCSLCKLCERACDAGAIRVGWDE 222 (259)
T ss_pred hhhCCChHHHHHhCCccceEccCCeeEEeChhhCcCchHHHHhCCCCcEEEEecC
Confidence 3789999999999999999886554455678899999999999999999988654
No 117
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.27 E-value=4.4e-07 Score=90.40 Aligned_cols=57 Identities=25% Similarity=0.637 Sum_probs=48.1
Q ss_pred ceeccccccccch--hhhcccccceeccc-ccceeecccCCccccchhhcCccCceeeee
Q psy9414 447 AIIKENKCIGCTL--CIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 447 ~~id~~~Ci~Cg~--Cv~~CP~~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..++...|++|+. |+++||++||.... .+...++.+.|++|+.|+.+||++|+.+..
T Consensus 87 ~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 87 YRFFRKSCQHCDNAPCVAVCPTGASFKDEETGIVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred eEECchhccCCcCcChHhhCCCCcEEEeCCCCeEEechhhCCcchHHHHhCCCCCcEecC
Confidence 3567899999996 99999999998653 345567889999999999999999987654
No 118
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.25 E-value=5.2e-07 Score=92.39 Aligned_cols=58 Identities=29% Similarity=0.700 Sum_probs=49.7
Q ss_pred cceeccccccccch--hhhcccc-cceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTL--CIQSCPV-DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~--Cv~~CP~-~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...+...+|++|+. |+.+||. +|+.....+...++.++|++|+.|+.+||.+|+.+..
T Consensus 85 ~~~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~a~~~~~ 145 (283)
T TIGR01582 85 EWLIRKDGCMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCGYCIVGCPFNIPRYDK 145 (283)
T ss_pred eEEECCccCCCCCCccccCCCCcCCeEEEcCCCcEEEeHHHCCcchHHHhhCCCCCcEEcC
Confidence 34567888999998 9999998 7887665666778999999999999999999998864
No 119
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.25 E-value=7.4e-07 Score=88.83 Aligned_cols=56 Identities=23% Similarity=0.616 Sum_probs=47.9
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
...+|.++|++|+.|+.+||.+++....+ ...++...|+.|+.|+.+||++.+...
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~~~-~~~i~~~~C~~C~~C~~~CP~~~~~~~ 223 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEMEDG-RPNVNRDRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEeCC-cEEEChhhccCHHHHHHHcCCCCcchh
Confidence 45789999999999999999999987644 356788999999999999999877543
No 120
>PRK13984 putative oxidoreductase; Provisional
Probab=98.24 E-value=5.6e-07 Score=102.50 Aligned_cols=65 Identities=32% Similarity=0.604 Sum_probs=52.7
Q ss_pred CCCCcccceeccccccccchhhhcccccceecccc-----------cceeecccCCccccchhhcCccCceeeeec
Q psy9414 440 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAK-----------HMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 440 ~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-----------~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+..++.+.+|.++|++|+.|+++||.+++..... ....++...|..|+.|+.+||++||.+...
T Consensus 33 ~~~~~~~~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 33 AERYRGFHINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred CccccCccccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence 34566778889999999999999999998865422 023567788999999999999999998754
No 121
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.24 E-value=4.4e-07 Score=109.37 Aligned_cols=60 Identities=28% Similarity=0.624 Sum_probs=47.6
Q ss_pred cceeccccccccchhhhcccccceeccc-----------------------cc---ceeecccCCccccchhhcCccC--
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA-----------------------KH---MHTIFSKLCTGCDLCIKKCPVN-- 497 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~-----------------------~~---~~~i~~~~C~~Cg~Cv~~CP~~-- 497 (582)
.+.++.++|++||.|+.+||+++|.... .+ ...++...|++||.|+++||.+
T Consensus 677 ~p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~ 756 (1165)
T TIGR02176 677 VPVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEK 756 (1165)
T ss_pred cceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCc
Confidence 4567899999999999999999986420 00 1246788999999999999995
Q ss_pred ceeeeecC
Q psy9414 498 CISMIEVT 505 (582)
Q Consensus 498 AI~~~~~~ 505 (582)
||.+....
T Consensus 757 Al~m~~~~ 764 (1165)
T TIGR02176 757 ALVMQPLA 764 (1165)
T ss_pred cccccchh
Confidence 99987654
No 122
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.23 E-value=5.1e-07 Score=90.86 Aligned_cols=56 Identities=25% Similarity=0.661 Sum_probs=49.2
Q ss_pred eccccccccch--hhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 449 IKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 449 id~~~Ci~Cg~--Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+....|++|+. |+.+||++|+.....+...++.+.|++|+.|+.+||++||.+...
T Consensus 95 ~~~~~C~~C~~p~Cv~~CP~~Ai~~~~~G~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 95 LLPRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred ecchhcCCcCCccCccccCCCCEEECCCCCEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 45789999996 999999999976656667789999999999999999999998754
No 123
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.20 E-value=3.8e-07 Score=57.66 Aligned_cols=23 Identities=48% Similarity=1.157 Sum_probs=18.0
Q ss_pred ceeccccccccchhhhcccccce
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai 469 (582)
+.+|+++|++||.|+.+||++||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 46778888888888888887765
No 124
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.19 E-value=8.6e-07 Score=85.75 Aligned_cols=58 Identities=24% Similarity=0.630 Sum_probs=50.7
Q ss_pred ceeccccccccc--hhhhcccccceeccc-ccceeecccCCccccchhhcCccCceeeeec
Q psy9414 447 AIIKENKCIGCT--LCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 447 ~~id~~~Ci~Cg--~Cv~~CP~~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+-...|.+|. -|+.+||++|..... +|...++.+.|++|+.|+.+||.+|..+...
T Consensus 62 ~~~~~~~C~HC~~ppCv~vCPtgA~~k~~~dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~ 122 (203)
T COG0437 62 YYYLSISCMHCEDPPCVKVCPTGALFKREEDGIVLVDKDLCIGCGYCIAACPYGAPQFNPD 122 (203)
T ss_pred EEEecccccCCCCCcccccCCCcceEEecCCCEEEecCCcccCchHHHhhCCCCCceeCcc
Confidence 345567899994 899999999988774 8888999999999999999999999988763
No 125
>PRK09898 hypothetical protein; Provisional
Probab=98.13 E-value=1.6e-06 Score=85.39 Aligned_cols=59 Identities=27% Similarity=0.567 Sum_probs=49.4
Q ss_pred ccceeccccccccc--hhhhcccccceecccc-cceeecccCCccccchhhcCccCceeeee
Q psy9414 445 CCAIIKENKCIGCT--LCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~-~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.+.++...|.+|+ .|+.+||+++|..... +...++..+|++|+.|+.+||.+||.+..
T Consensus 114 g~~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~vd~~~CigC~~C~~aCP~~ai~~~~ 175 (208)
T PRK09898 114 GDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNT 175 (208)
T ss_pred CcEEEeCccCCCccCcchhhhCCcceEEeeccCCeEEeccccCCCcCcccccCCCCCCEecC
Confidence 34567889999998 9999999999876532 34567889999999999999999998753
No 126
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=98.12 E-value=1.6e-06 Score=73.73 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=45.6
Q ss_pred CCCcccceecccccccc--chhhhcccccceecccccceeecccCCccccchhhcCccCce
Q psy9414 441 EKSRCCAIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 441 ~~~~~~~~id~~~Ci~C--g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
|....-+.++.+. ..| ..|+.+||++|+..+..+...++.+.|++||.|+.+||.+++
T Consensus 19 d~~~~HI~i~~~~-~~~~~k~C~~aCPagA~~~~e~G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 19 DEEHPHIVVKADA-DKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred CCCCCcEEEcCCC-CchhhhHHHHHCCHhhcEeCCCCCEEEcCCCCCcchhhhhhcCCCCc
Confidence 3344455666544 223 699999999999876677788999999999999999999975
No 127
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=98.11 E-value=7.8e-07 Score=71.11 Aligned_cols=45 Identities=40% Similarity=0.908 Sum_probs=33.6
Q ss_pred cccccchhhhcccccceeccccc----------------ceeecccCCc------cccchhhcCccC
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKH----------------MHTIFSKLCT------GCDLCIKKCPVN 497 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~----------------~~~i~~~~C~------~Cg~Cv~~CP~~ 497 (582)
.|+.|++|+++||.+||...... ....+...|. +||.|+.+||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 49999999999999999876111 1123344565 999999999974
No 128
>PRK13795 hypothetical protein; Provisional
Probab=98.10 E-value=1.4e-06 Score=99.33 Aligned_cols=56 Identities=25% Similarity=0.632 Sum_probs=47.2
Q ss_pred ceeccccccccchhhhcccccceeccccc-ceeecccCCccccchhhcCccCceeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKH-MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~-~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..++.+.|++|+.|+.+||.++|...... ...++...|+.||.|+.+||++||...
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~id~~~C~~Cg~C~~aCP~~a~~~~ 632 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEGKRKISVDEEKCIHCGKCTEVCPVVKYKDK 632 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecCCceEEechhhcCChhHHHhhcCCCeeEee
Confidence 46678899999999999999999876443 245678899999999999999998753
No 129
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.09 E-value=2.2e-06 Score=80.98 Aligned_cols=56 Identities=21% Similarity=0.584 Sum_probs=48.0
Q ss_pred eeccccccccc--hhhhcccccceecc-cccceeecccCCccccchhhcCccCceeeee
Q psy9414 448 IIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 448 ~id~~~Ci~Cg--~Cv~~CP~~ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+....|++|+ .|+++||+++|... ..+...++.+.|++|+.|+.+||.+||.+..
T Consensus 58 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~C~~C~~aCP~~ai~~~~ 116 (161)
T TIGR02951 58 YYISISCNHCADPACVKNCPTGAMYKREEDGLVLVDQDKCIGCRYCVWACPYGAPQYDP 116 (161)
T ss_pred EEcCccCCCcCCcchHHhCCCCCEEeecCCCcEEECHHhCCCchHHHhhCCCCCcEEcC
Confidence 45678999999 99999999999764 3455678889999999999999999998764
No 130
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.07 E-value=1.7e-06 Score=90.35 Aligned_cols=56 Identities=29% Similarity=0.702 Sum_probs=48.0
Q ss_pred eeccccccccc--hhhhcccccceecccc-cceeecccCCccccchhhcCccCceeeee
Q psy9414 448 IIKENKCIGCT--LCIQSCPVDAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 448 ~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~-~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+....|++|+ .|+.+||.+||..... +...++.++|++|+.|+.+||.+||.+..
T Consensus 106 ~~~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 106 AYIKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDKDVCTGCRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccccCCCcCchhhHhhCCCCCEEecccCCcccCCHHHcCcccHHHHhCCccceeccc
Confidence 35678999998 8999999999987643 55678889999999999999999998753
No 131
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.07 E-value=2.3e-06 Score=84.48 Aligned_cols=56 Identities=25% Similarity=0.645 Sum_probs=43.9
Q ss_pred eeccccccccc--hhhhcccccceecccc-------c-ceeecccCCc-----cccchhhcCcc--Cceeeee
Q psy9414 448 IIKENKCIGCT--LCIQSCPVDAIIGAAK-------H-MHTIFSKLCT-----GCDLCIKKCPV--NCISMIE 503 (582)
Q Consensus 448 ~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~-------~-~~~i~~~~C~-----~Cg~Cv~~CP~--~AI~~~~ 503 (582)
..+...|++|+ .|+.+||++||..... + ...++.+.|+ +|+.|+++||+ +||.+..
T Consensus 87 ~~~~~~C~~C~d~~Cv~~CP~~Ai~~~~~~~~~~~~g~av~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~ 159 (213)
T TIGR00397 87 TPREVPCRMCKDIPCARACPTGALDPLLTDIRKADMGVAVLVGHETCLNYKGLNCSICVRVCPIRGEAISLKP 159 (213)
T ss_pred cccCCcCCCCCCchHHhHcCHhhhchhhhccccccCceEEEECCCCcccCCCCCcccchhhCCCCcceEEEec
Confidence 34567899998 7999999999875311 1 1346788998 99999999999 7998764
No 132
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=98.05 E-value=1.7e-06 Score=91.63 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=42.2
Q ss_pred eeccccccccchhhhcccccceecccccce-----------eecccCCccccchhhcCccCce
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMH-----------TIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~-----------~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
.++.++|++||.|+.+||.++|.+...... .++...|+.||.|+.+||..++
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 678999999999999999999987543211 1356789999999999998654
No 133
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.00 E-value=3.6e-06 Score=85.19 Aligned_cols=54 Identities=24% Similarity=0.685 Sum_probs=43.3
Q ss_pred ccccccccc--hhhhcccccceecccc-------ccee-ecccCCc-----cccchhhcCcc--Cceeeee
Q psy9414 450 KENKCIGCT--LCIQSCPVDAIIGAAK-------HMHT-IFSKLCT-----GCDLCIKKCPV--NCISMIE 503 (582)
Q Consensus 450 d~~~Ci~Cg--~Cv~~CP~~ai~~~~~-------~~~~-i~~~~C~-----~Cg~Cv~~CP~--~AI~~~~ 503 (582)
....|..|+ .|+.+||++||..... +... ++.+.|+ .|+.|+.+||+ +||.+..
T Consensus 95 ~~~~C~~C~~~~Cv~aCPtgAL~~~~~~~~~~~~g~av~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~ 165 (254)
T PRK09476 95 RDIPCEMCEDIPCVKACPSGALDRELVDIDDARMGLAVLVDQENCLNFQGLRCDVCYRVCPLIDKAITLEL 165 (254)
T ss_pred cCCcCcCCCCCchhhccCccceEeecccccccccCceeecchhhccccCCCchHHHhhhCCCccCeEEEEc
Confidence 346799999 5999999999976421 2233 7789999 89999999996 8998864
No 134
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.97 E-value=3.4e-06 Score=53.39 Aligned_cols=22 Identities=55% Similarity=1.369 Sum_probs=13.0
Q ss_pred eeccccccccchhhhcccccce
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai 469 (582)
.+|.++|++||.|+.+||++||
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ai 23 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDAI 23 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSSE
T ss_pred EEchHHCCCcchhhhhcccccC
Confidence 4556666666666666666665
No 135
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=97.96 E-value=4.5e-06 Score=80.40 Aligned_cols=52 Identities=27% Similarity=0.749 Sum_probs=45.2
Q ss_pred cccccccc--hhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 451 ENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 451 ~~~Ci~Cg--~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...|++|+ .|+++||.+++... .+...++.++|++|+.|+.+||.+||.+..
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~-~~~v~i~~~~C~~C~~C~~~CP~~ai~~~~ 108 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRD-KGFVHVMQERCIGCKTCVVACPYGAMEVVV 108 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEcc-CCeEEeChhhCCCcchhhhhCCccCeEeec
Confidence 46899999 99999999999875 344567889999999999999999998864
No 136
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=3.9e-06 Score=94.85 Aligned_cols=57 Identities=33% Similarity=0.712 Sum_probs=46.2
Q ss_pred ceecccccccc------chhhhcccccceeccccc-ceeecccCCccccchhhcCccCceeeee
Q psy9414 447 AIIKENKCIGC------TLCIQSCPVDAIIGAAKH-MHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 447 ~~id~~~Ci~C------g~Cv~~CP~~ai~~~~~~-~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.++..+|..| +.|+.+||.++|....++ ...++...|++|+.|+.+||++||.+..
T Consensus 499 ~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 499 ARQEAARCLSCGNCFECDNCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhhcccCcccccccccchhhhhCChhheeeecCCceEEEecccCcChhHHHhhcCcCceEecc
Confidence 34567777777 899999999998764332 3467889999999999999999999864
No 137
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=97.91 E-value=3.8e-06 Score=91.00 Aligned_cols=47 Identities=30% Similarity=0.731 Sum_probs=36.0
Q ss_pred cccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.++|++|+.|+++||.++ ....+ ....|+.|+.|+++||. |+.....
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi-~~~~~-----~~~~Ci~Cg~CidaCp~-a~~~~g~ 276 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI-DIRDG-----LQLECINCGLCIDACDD-VMEKMGK 276 (434)
T ss_pred CCCCCChhhhHHhCCCCC-EeCCC-----CchhChhhhHHHHhCCC-hHHhcCC
Confidence 578999999999999983 33221 23579999999999997 6554443
No 138
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.86 E-value=6e-06 Score=90.86 Aligned_cols=57 Identities=30% Similarity=0.584 Sum_probs=45.5
Q ss_pred cceeccccccccchhhh--cccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQ--SCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~--~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...+|.++|+||+.|+. .||.-.+.-. .....+|...|.+||.|+++||+.||....
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~~k~~id~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-FKKARIDPSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-CCceeecccccccchhhhhcCchhheeccc
Confidence 46889999999999995 5994333222 355678999999999999999999997654
No 139
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.84 E-value=7.1e-06 Score=97.02 Aligned_cols=55 Identities=22% Similarity=0.605 Sum_probs=41.2
Q ss_pred ccccccc----cchhhhccccccee-cc----cccceeecccC-CccccchhhcCccCceeeeec
Q psy9414 450 KENKCIG----CTLCIQSCPVDAII-GA----AKHMHTIFSKL-CTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 450 d~~~Ci~----Cg~Cv~~CP~~ai~-~~----~~~~~~i~~~~-C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
+.++|.+ ||.|+.+||.+|+. +. .+....++.+. |++||.|+.+||++|+.+...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk 943 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK 943 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee
Confidence 4589996 99999999999852 21 12222244444 999999999999999988765
No 140
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.81 E-value=9e-06 Score=95.87 Aligned_cols=56 Identities=23% Similarity=0.625 Sum_probs=42.2
Q ss_pred eecccccccc----chhhhcccccc---eeccc----ccceeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIGC----TLCIQSCPVDA---IIGAA----KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~C----g~Cv~~CP~~a---i~~~~----~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.-+.++|.+| |.|+.+||.+| |...+ ... ....+.|++||.|+.+||++|=.+.+.
T Consensus 882 ~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~-~~~~~~C~~CG~C~~~CP~~~~py~dk 948 (1019)
T PRK09853 882 AQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQI-VHLDAMCNECGNCAQFCPWNGKPYKDK 948 (1019)
T ss_pred cccccccCCcccccchhhhhCCcccccccccCCcccCCce-EEcCccCccccchhhhCCCCCCccccc
Confidence 4577899999 99999999999 43222 122 333589999999999999998655443
No 141
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=97.80 E-value=7.5e-06 Score=86.36 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=40.0
Q ss_pred ccccchhhhcccccceeccc---ccceeecccCCccccchhhcCccCcee
Q psy9414 454 CIGCTLCIQSCPVDAIIGAA---KHMHTIFSKLCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~ai~~~~---~~~~~i~~~~C~~Cg~Cv~~CP~~AI~ 500 (582)
|..|+.|+.+||.+||.+.. .+...++.+.|++||.|+.+||++|+.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhcc
Confidence 45569999999999998832 345688999999999999999999986
No 142
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=97.79 E-value=1.3e-05 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.985 Sum_probs=20.1
Q ss_pred eecccCCccccchhhcCccCcee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~ 500 (582)
.++.+.|++||.|+.+||.+||+
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSSEE
T ss_pred EEchHHCCCcchhhhhcccccCC
Confidence 46789999999999999999985
No 143
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=97.78 E-value=1.5e-05 Score=55.18 Aligned_cols=34 Identities=56% Similarity=1.181 Sum_probs=25.2
Q ss_pred ccccccCCcCCCCCchhHHHHHHcccccCCCCCC
Q psy9414 381 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPT 414 (582)
Q Consensus 381 glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~ 414 (582)
+||+.+|+.||+++|..|+++|+.+......|+.
T Consensus 1 lLP~~nCg~CG~~~C~~fA~ai~~g~~~~~~C~~ 34 (35)
T PF04060_consen 1 LLPGTNCGACGYPTCRAFAEAIVRGEAKINDCPP 34 (35)
T ss_dssp TS-S----TTSSSSHHHHHHHHHCTSS-GGC-TT
T ss_pred CCCCCcCCCCCCccHHHHHHHHHcCCCCcccCCC
Confidence 5899999999999999999999999999999975
No 144
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.78 E-value=6.3e-06 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.856 Sum_probs=20.9
Q ss_pred eeecccCCccccchhhcCccCce
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
..++.++|++||.|+.+||.+||
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred cEEChhhCcChhHHHHhcchhcC
Confidence 35789999999999999999987
No 145
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.75 E-value=1.2e-05 Score=91.53 Aligned_cols=51 Identities=37% Similarity=0.890 Sum_probs=41.0
Q ss_pred ccceeccccccccchhhh--cccccceecccccceeecccCCccccchhhcCccCce
Q psy9414 445 CCAIIKENKCIGCTLCIQ--SCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~--~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
..+.+|.++|++|+.|++ .||... .. ++...++. .|++||.|+++||.+||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~~--~~-~~~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAIE--PE-DKEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCcc--cc-CCcceeCC-CCcCHHHHHhhCccccC
Confidence 456889999999999999 999543 22 23345666 79999999999999986
No 146
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.70 E-value=1.9e-05 Score=84.00 Aligned_cols=60 Identities=35% Similarity=0.858 Sum_probs=47.4
Q ss_pred cceeccccccc--c-chhhhcccc-----cceeccc-ccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 446 CAIIKENKCIG--C-TLCIQSCPV-----DAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 446 ~~~id~~~Ci~--C-g~Cv~~CP~-----~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.++|.++|.- | ..|.+.||. .+|.++. .+...|....|++||.|+..||.+||++...+
T Consensus 5 iAvvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkpvIsE~lCiGCGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 5 IAVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKPVISEELCIGCGICVKKCPFDAISIVNLP 73 (591)
T ss_pred EEEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCceeEhhhhccchhhhccCCcceEEEecCc
Confidence 45788888864 6 589999996 2555543 34567888999999999999999999987554
No 147
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.68 E-value=1.2e-05 Score=74.14 Aligned_cols=62 Identities=18% Similarity=0.061 Sum_probs=57.3
Q ss_pred cccccccccccCCC---cEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecccCC-Cccccccc
Q psy9414 52 YDYAHPISDAIENI---THSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLT-HTITSKRK 118 (582)
Q Consensus 52 Y~fa~~vdD~~~gi---thvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~-~~~lSKr~ 118 (582)
|++.+++++...++ ||+++|.|+..+.+++.++.+++|+ ...|...+|++|... |.|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----PARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----CCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 9999999999999999999999997 247999999999875 58999995
No 148
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.65 E-value=2.2e-05 Score=90.12 Aligned_cols=54 Identities=26% Similarity=0.728 Sum_probs=46.6
Q ss_pred eccccccccch--hhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 449 IKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 449 id~~~Ci~Cg~--Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
++...|.+|+. |+.+||.++|.... +...++..+|++|+.|+.+||++||.+..
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~-~~v~~d~~~C~gC~~C~~~CP~~ai~~~~ 106 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS-DSVQLDEQKCIGCKRCAIACPFGVVEMVD 106 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc-cceecChhhCcchhhHhhhcCCCCEEccC
Confidence 46789999996 99999999998754 34567889999999999999999998764
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.60 E-value=3.7e-05 Score=88.51 Aligned_cols=53 Identities=26% Similarity=0.683 Sum_probs=45.9
Q ss_pred ccccccccch--hhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 450 KENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 450 d~~~Ci~Cg~--Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
....|++|+. |+.+||.+||.... +...++..+|++|+.|+.+||++||.+..
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~-~~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNGAISHVD-DSIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CCccCCCCCChhHhhhCCccceeccC-CeEEEecccccCcChhcccCCccCeeecc
Confidence 4679999986 99999999998754 34568899999999999999999998764
No 150
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=97.59 E-value=5.6e-06 Score=63.81 Aligned_cols=47 Identities=34% Similarity=0.722 Sum_probs=22.3
Q ss_pred cccccccchhhhcccccceecc----cccc--e--eecccCCccccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGA----AKHM--H--TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~----~~~~--~--~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.++|++||.|..+||....... .... . ......|+.||.|..+||.+
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNTGRFSHPPRDRRSAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHHHHHHTSTTS--HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHHccCccChHHHChhhhcccccccCcchhHHHhhcccccCCcCcCCccCcCccc
Confidence 4689999999999996322110 0000 0 01136899999999999987
No 151
>PRK13409 putative ATPase RIL; Provisional
Probab=97.58 E-value=3.7e-05 Score=87.16 Aligned_cols=60 Identities=35% Similarity=0.844 Sum_probs=47.6
Q ss_pred cceecccccc--ccc-hhhhccccc-----ceecc-cccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 446 CAIIKENKCI--GCT-LCIQSCPVD-----AIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 446 ~~~id~~~Ci--~Cg-~Cv~~CP~~-----ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.++|.++|- .|+ .|.+.||.. +|.++ ..+...+....|++||.|+..||.+||++...+
T Consensus 4 ~~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p 72 (590)
T PRK13409 4 IAVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGICVKKCPFDAISIVNLP 72 (590)
T ss_pred EEEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhccccccccccCCcceEEEeeCc
Confidence 4578888885 585 799999973 55553 334567888999999999999999999987654
No 152
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.54 E-value=2.8e-05 Score=83.10 Aligned_cols=57 Identities=32% Similarity=0.724 Sum_probs=44.3
Q ss_pred eeccccccccchhhhcccccc-------------eecc----cccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDA-------------IIGA----AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~a-------------i~~~----~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.+| ++|+|||.|+.+||..+ |.+. -.....++...|+.||.|..+||.+|+.+.+.+
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred ccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCC
Confidence 456 99999999999999853 2211 011245788999999999999999999887655
No 153
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.51 E-value=3e-05 Score=60.54 Aligned_cols=25 Identities=52% Similarity=1.164 Sum_probs=17.9
Q ss_pred ceeccccccccchhhhcccc-cceec
Q psy9414 447 AIIKENKCIGCTLCIQSCPV-DAIIG 471 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~-~ai~~ 471 (582)
..++.+.|+|||.|+.+||+ +||.+
T Consensus 34 ~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 34 VPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp SECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred EEeccccCcCcCcccccCCCccCCCC
Confidence 35678999999999999997 99974
No 154
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=97.46 E-value=4.6e-05 Score=83.30 Aligned_cols=49 Identities=29% Similarity=0.644 Sum_probs=36.7
Q ss_pred eccccccccchhhhcccccceecc---------cccceeecccCCccccchhhcCccC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~---------~~~~~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.....|++||.|+.+||.+.+... .......+...|+.||.|..+||.+
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 466899999999999998754211 0111234567899999999999997
No 155
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.44 E-value=4.8e-05 Score=46.61 Aligned_cols=20 Identities=45% Similarity=1.164 Sum_probs=16.8
Q ss_pred ceeccccccccchhhhcccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPV 466 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~ 466 (582)
+.+|.++|+||+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 46788999999999999984
No 156
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.38 E-value=7e-05 Score=71.08 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=25.2
Q ss_pred cceeccccccccchhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
...+|..+||.||.|+++||++||.+..
T Consensus 89 ~~~In~grCIfCg~C~e~CPt~Al~~t~ 116 (172)
T COG1143 89 RPDINLGRCIFCGLCVEVCPTGALVLTP 116 (172)
T ss_pred cceeccccccccCchhhhCchhhhcCCc
Confidence 5678999999999999999999998754
No 157
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=97.25 E-value=5.9e-05 Score=86.05 Aligned_cols=53 Identities=32% Similarity=0.629 Sum_probs=37.9
Q ss_pred cceeccccccccchhhhccccccee-----cccccc---eeecccCCccccchhhcCccCc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAII-----GAAKHM---HTIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~-----~~~~~~---~~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
.+....++|++|+.|+.+||.+... ....+. .......|++||.|.++||++.
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 3455778999999999999987421 111111 1233568999999999999983
No 158
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=97.19 E-value=0.00024 Score=60.04 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=49.0
Q ss_pred cceeccccccccc--hhhhcccccceecccccceeecccCCccccchhhcCcc-Cceeee
Q psy9414 446 CAIIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISMI 502 (582)
Q Consensus 446 ~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~-~AI~~~ 502 (582)
+...|...|..|. .|+.+||.++-...+.+...++...|..||.|--+||. +.|.+.
T Consensus 27 I~v~~~~~~~~~~~~~l~~aCPA~~Y~~~~~g~l~~~yegClECGTCRvlc~~~~~i~W~ 86 (99)
T COG2440 27 IIVKDPDDCQECEDKPLIKACPAGCYKLIDDGKLRFDYEGCLECGTCRVLCPHSGLIQWR 86 (99)
T ss_pred EecCCchhhhhccchhhhhcCCHHHeeECCCCcEEEeecCeeeccceeEecCCCcceEEe
Confidence 4455688999998 99999999998887767778899999999999999998 777664
No 159
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=97.18 E-value=0.00013 Score=75.15 Aligned_cols=49 Identities=37% Similarity=0.725 Sum_probs=34.8
Q ss_pred cccccccchhhhcccccceecccc---c----ceee------------cccCCc-cccchhhcCccCce
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAK---H----MHTI------------FSKLCT-GCDLCIKKCPVNCI 499 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~---~----~~~i------------~~~~C~-~Cg~Cv~~CP~~AI 499 (582)
.+.|..|+.|+++||++||..... . ...+ +...|+ +|+.|..+||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCC
Confidence 578999999999999999863210 0 0001 123575 79999999999864
No 160
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.17 E-value=0.00017 Score=72.91 Aligned_cols=50 Identities=24% Similarity=0.542 Sum_probs=34.5
Q ss_pred eeccccccccchhhhccccccee-----------cccc--c-c-----------eeecccCCccccchhhcCccC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAII-----------GAAK--H-M-----------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~-----------~~~~--~-~-----------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
..+...||.||.|+.+||...+. +... . . .......|+.||.|.++||.+
T Consensus 153 ~~~~~~CI~CG~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 153 AFDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKG 227 (250)
T ss_pred hhCccccCCCcccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCC
Confidence 34577899999999999986321 0100 0 0 001235799999999999998
No 161
>PRK13984 putative oxidoreductase; Provisional
Probab=97.16 E-value=0.00023 Score=81.29 Aligned_cols=26 Identities=23% Similarity=0.682 Sum_probs=22.6
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.+.|+.|+.|+.+||++||.+.
T Consensus 81 ~~i~~~~c~~c~~c~~~Cp~~Ai~~~ 106 (604)
T PRK13984 81 PVIDYGRCSFCALCVDICTTGSLKMT 106 (604)
T ss_pred cccCcccCcCcchHHhhCCcCcEEec
Confidence 46788999999999999999987653
No 162
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.14 E-value=0.00014 Score=40.57 Aligned_cols=15 Identities=47% Similarity=1.444 Sum_probs=8.8
Q ss_pred CccccchhhcCccCc
Q psy9414 484 CTGCDLCIKKCPVNC 498 (582)
Q Consensus 484 C~~Cg~Cv~~CP~~A 498 (582)
|++|+.|+++||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 555666666666554
No 163
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=97.13 E-value=7e-05 Score=58.56 Aligned_cols=45 Identities=29% Similarity=0.786 Sum_probs=23.0
Q ss_pred cccccchhhhcccccceeccccc--------------ceeecccCCccccchhhcCccC
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAAKH--------------MHTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~~~--------------~~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
+|++||.|+.+||.+........ ........|+.||.|..+||.+
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp T----STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CCCCCCcCcccCCCccccCccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 59999999999998654211000 0113457899999999999987
No 164
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=97.11 E-value=0.00011 Score=83.70 Aligned_cols=50 Identities=30% Similarity=0.718 Sum_probs=35.6
Q ss_pred eeccccccccchhhhcccccceec-----cccc---ceeecccCCccccchhhcCccC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIG-----AAKH---MHTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~-----~~~~---~~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
....++|++||.|+.+||.+.... ...+ ........|++||.|+++||++
T Consensus 395 l~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 395 MELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred hhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 445789999999999999873211 1111 1112346899999999999998
No 165
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=97.09 E-value=9.1e-05 Score=84.51 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=36.5
Q ss_pred eeccccccccchhhhccccccee-----ccccc-c--eeecccCCccccchhhcCccCc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAII-----GAAKH-M--HTIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~-----~~~~~-~--~~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
....++|++||.|+.+||.+... ....+ . .......|++||.|+++||+++
T Consensus 361 ~~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 361 QELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HHhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 45678999999999999987421 11111 1 1112578999999999999986
No 166
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=97.08 E-value=0.00023 Score=65.91 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=31.6
Q ss_pred ccccccchhhhcccccceec-----------cc-cc--ceeecccCCccccchhhcCccCc
Q psy9414 452 NKCIGCTLCIQSCPVDAIIG-----------AA-KH--MHTIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai~~-----------~~-~~--~~~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
+.|+.||.|..+||+..... .+ .. ...-....|..||.|..+||.+.
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred ccccCCCCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCC
Confidence 47999999999999742110 00 00 00112347999999999999983
No 167
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=97.07 E-value=0.00027 Score=56.42 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=35.6
Q ss_pred cceeccccccccchhhhcccccceecccccceee----------cccCCccccchhhcCccCceeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI----------FSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i----------~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.+.+|.+.||+||.|..+||. .+.++..+...+ ..+.=.....-+..||++||++.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPd-vF~~~d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPD-VFDYDDEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEEechhhccccchhhhcCCc-ceeeCCCcceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 357899999999999999995 333333332211 11110112356789999999874
No 168
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.06 E-value=0.00023 Score=76.63 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=37.3
Q ss_pred chhhhcccccceecccccceeecccCCccccchhhcCccCceeee
Q psy9414 458 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 458 g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..|+..||++||..+......++...|+.|++|+.+||. |+...
T Consensus 248 ~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred hhHhhcCCccccccCCCceEEEcchhcCcCccccccCcc-cccCC
Confidence 349999999999987643678999999999999999997 66554
No 169
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=97.06 E-value=0.00024 Score=56.52 Aligned_cols=54 Identities=20% Similarity=0.494 Sum_probs=34.1
Q ss_pred ceeccccccccchhhhcccccceecccccceeecc----------cCC-ccccchhhcCccCceee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFS----------KLC-TGCDLCIKKCPVNCISM 501 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~----------~~C-~~Cg~Cv~~CP~~AI~~ 501 (582)
+.+|.++|+|||.|+..||. .+.++..+...+.. ..- ..-..-++.||++||++
T Consensus 1 V~vD~~~C~gcg~C~~~aP~-vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPE-VFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCc-cEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 46899999999999999994 44444333221110 101 11234688999999963
No 170
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.04 E-value=0.00018 Score=71.44 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=33.2
Q ss_pred ccccccccchhhhcccccceec----------------ccc---cc-----e--eecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIG----------------AAK---HM-----H--TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~----------------~~~---~~-----~--~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
+...|++||.|+.+||...... +.. .. . ......|+.||.|+.+||.+
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred hhhhccccccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCC
Confidence 4579999999999999752211 000 00 0 12345799999999999997
No 171
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=97.04 E-value=0.00047 Score=53.60 Aligned_cols=52 Identities=21% Similarity=0.486 Sum_probs=28.3
Q ss_pred eccccccccchhhhcccccceecccc-cceee-cccC----CccccchhhcCccCceee
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGAAK-HMHTI-FSKL----CTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~~~~i-~~~~----C~~Cg~Cv~~CP~~AI~~ 501 (582)
+|.++|++||.|+..||. .+.++.. +...+ .... =..+...+..||++||+.
T Consensus 1 VD~~~Ci~Cg~C~~~aP~-vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPD-VFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TT-TEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcH-heeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 478999999999999995 5555443 22222 1111 123567889999999963
No 172
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.04 E-value=0.00036 Score=80.29 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=42.3
Q ss_pred CCCCchHHHHHHHHhhCCCcccccccc--CCCCCcccceeccccccccchhhhcccc
Q psy9414 412 CPTGGRKGIIKLAKYLNKPIIPLNTIY--GNEKSRCCAIIKENKCIGCTLCIQSCPV 466 (582)
Q Consensus 412 Cp~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~ 466 (582)
|...+.|.|+.++..+++....+.... ..+.+.+.+.+|.++||.||+|+++|..
T Consensus 574 C~~~~~C~Lq~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~kCI~CgrCv~~C~e 630 (652)
T PRK12814 574 CNAVDDCRLRDLATRYLPDTPCKEEEHEGFSITRNGDIRFEREKCVDCGICVRTLEE 630 (652)
T ss_pred cCCCCCChhHHHHHHhCCCcccccccccCccccCCCCeEeccccccCchHHHHHHHH
Confidence 446788999999999998765554321 1234556789999999999999999995
No 173
>KOG2282|consensus
Probab=96.96 E-value=0.00023 Score=76.09 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=71.5
Q ss_pred hHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccC--CCC-Ccccceeccccccccchhhhcccccceecc-
Q psy9414 397 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEK-SRCCAIIKENKCIGCTLCIQSCPVDAIIGA- 472 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~-~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~- 472 (582)
-+.-.|.||+.+|+.|.++|.|.||.-+-.+|-.-.++..... .|+ -.+.+.--+.+||+|.+|++.--.-|-.-+
T Consensus 117 vmefll~nhpldcpicdqggecdlqdq~m~fgsdr~rf~~~kravedknigplvktimtrciqctrcvrfaseiagv~dl 196 (708)
T KOG2282|consen 117 VMEFLLMNHPLDCPICDQGGECDLQDQAMAFGSDRSRFTEGKRAVEDKNIGPLVKTIMTRCIQCTRCVRFASEIAGVDDL 196 (708)
T ss_pred HHHHHHhCCCCCCCccCCCCcCcchHhHhhhcCchhhhhhhhhhhhcCccchHHHHHHHHHHhHHHHHHHHHhhcCCccc
Confidence 3566789999999999999999999877777766555543210 111 223444457899999999997554332111
Q ss_pred ---cccc-eee-----cccCCccccchhhcCccCceeeeecCccccchh
Q psy9414 473 ---AKHM-HTI-----FSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 512 (582)
Q Consensus 473 ---~~~~-~~i-----~~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~~~ 512 (582)
+.+. ..+ ....-..-|.-+..||+||++-.++.-....|+
T Consensus 197 gttgrg~d~qigtyvek~f~selsgniidicpvgaltskpyaf~arpwe 245 (708)
T KOG2282|consen 197 GTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKPYAFTARPWE 245 (708)
T ss_pred ccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccCcceeeccccc
Confidence 1110 000 011123457889999999998765443333343
No 174
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=96.88 E-value=0.0033 Score=70.19 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=71.0
Q ss_pred ccCCCcEEecCccccc-ChHHHHHHHH-HcCCCCCCCCCCCceeEeecccCC-CccccccchhhhccccccCCCCCCCcc
Q psy9414 61 AIENITHSICTLEFQD-HRPFYEWILN-KIDKTNFIKRPFPKQYEFSRLNLT-HTITSKRKLLKLLEKKIVDGWDDPRMP 137 (582)
Q Consensus 61 ~~~githvir~~e~~~-~~~~~~~l~~-~l~~~~~~~~~~p~~~~~~~l~~~-~~~lSKr~~~~~v~~~~v~gwdDpr~~ 137 (582)
+..||+....|.||.. +..++..+.+ .||+ .+|...+|+.+... |.|||||+.+.+
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~------~~P~~~~y~~v~~~~G~KMSKSkGN~i--------------- 289 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILGG------EPPEPFVYELFLDKKGEKISKSKGNVI--------------- 289 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcCC------CCCeeeeeeeEEeCCCCcccccCCCcc---------------
Confidence 3679999999999999 9999999999 9999 88999999988887 899999985432
Q ss_pred cHHHHHHcCCCHHHHHHHHHHhcccCCCCcccH
Q psy9414 138 TLIGMRRRGYTPESIKLFCKRIGVSKSDSWINI 170 (582)
Q Consensus 138 tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~ 170 (582)
++..+.+. +.|++++-|+..-.-...+..|++
T Consensus 290 ~~~d~l~~-~~pd~lR~~l~~~~~~~~~~~f~~ 321 (510)
T PRK00750 290 TIEDWLEY-APPESLRLFMFARPKPAKRLDFDV 321 (510)
T ss_pred CHHHHHHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence 45555554 889999878776554445556665
No 175
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=96.86 E-value=0.00045 Score=72.13 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=34.2
Q ss_pred cccccccchhhhcccccceeccccc-------------------ceeeccc-----CCc-----cccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAKH-------------------MHTIFSK-----LCT-----GCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~~-------------------~~~i~~~-----~C~-----~Cg~Cv~~CP~~ 497 (582)
.+.|..|++|+++||.+||..+.+. ...++.. .|. .|+.|+.+||.+
T Consensus 204 ~~fC~~C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf~ 279 (314)
T TIGR02486 204 AKFCETCGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPFN 279 (314)
T ss_pred cccCcchhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCCC
Confidence 3689999999999999999865321 0112222 354 599999999987
No 176
>PRK06214 sulfite reductase; Provisional
Probab=96.85 E-value=0.0011 Score=74.11 Aligned_cols=55 Identities=33% Similarity=0.648 Sum_probs=46.9
Q ss_pred cccccccccccccCCcCCCCCchhHHHHHHccc-ccCCCCCCCchHHHHHHHHhhCC
Q psy9414 374 HAQFEQNLLPQTQCTKCGYPGCRQYAEAIANKK-ANYNQCPTGGRKGIIKLAKYLNK 429 (582)
Q Consensus 374 ~~QfeR~glp~~~C~~Cg~~gC~~~a~~l~~~~-~~c~~Cp~~~~~~l~~l~~~~~~ 429 (582)
.++-...+||+.||++||| +|..|+++|+.+. .+.+.|++||...+..++..+..
T Consensus 79 ~~~~~~~~lp~~~Cg~CGy-~C~~~a~a~~~~~~~~~~~C~~gg~~~~~~~~~~~~~ 134 (530)
T PRK06214 79 LPRKLMAAMAQQDCGQCGY-NCQDYAEAIASGEEKRLNLCAPGGKETARMLKKLAEE 134 (530)
T ss_pred HHHHHHHhCCCCCcccCCC-CCHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 3445556899999999999 8999999999885 78999999999988888777665
No 177
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=96.81 E-value=0.0014 Score=71.38 Aligned_cols=53 Identities=36% Similarity=0.661 Sum_probs=48.6
Q ss_pred ccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccc
Q psy9414 381 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIP 433 (582)
Q Consensus 381 glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~ 433 (582)
.||+.+|+.||+++|..|+++++.+....+.||.++...+.+++..+..++..
T Consensus 11 ~LP~~nCg~CG~~~C~afA~~v~~g~~~~~~C~~~~~~~~~~l~~~~~ppi~~ 63 (450)
T PRK04165 11 LLPKTNCGECGEPTCLAFAMKLASGKAELDDCPYLSEEAKEKLEEASAPPIRE 63 (450)
T ss_pred hCCCCCCCCCCCccHHHHHHHHHcCCCCccCCCCCCHHHHHHHHHHhCCCcee
Confidence 68999999999999999999999999999999999999999999988876543
No 178
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.80 E-value=0.00065 Score=65.40 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.4
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..++...|++||.|+.+||++||.+..
T Consensus 68 ~~~~~~~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 68 WQLYLGRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred eeeccCcCcCCCCcccccCcCeEEecc
Confidence 456778999999999999999998753
No 179
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.80 E-value=0.00043 Score=38.63 Aligned_cols=15 Identities=47% Similarity=1.411 Sum_probs=13.9
Q ss_pred ccccchhhhcccccc
Q psy9414 454 CIGCTLCIQSCPVDA 468 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~a 468 (582)
|++|+.|+.+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999986
No 180
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.77 E-value=0.0005 Score=70.69 Aligned_cols=49 Identities=37% Similarity=0.651 Sum_probs=33.8
Q ss_pred eccccccccchhhhcccccceec----------------cccc--c------eeecccCCccccchhhcCccC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIG----------------AAKH--M------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~----------------~~~~--~------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.+...|+.||.|+.+||...... +... . .......|+.||.|..+||.+
T Consensus 149 ~~~~~CI~CG~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 149 WKFAQCIWCGLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRD 221 (279)
T ss_pred hcchhCcccCcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCC
Confidence 35689999999999999753210 1010 0 001236899999999999986
No 181
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.76 E-value=0.00073 Score=81.04 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=40.4
Q ss_pred cceeccccccccchhhh--cccccceeccc---ccceeecccCCccccchhh-cCccC
Q psy9414 446 CAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPVN 497 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~--~CP~~ai~~~~---~~~~~i~~~~C~~Cg~Cv~-~CP~~ 497 (582)
.+.||++.|.|||.|.. .|| +|.... +....||.+.|.+|+.|++ +||+=
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~--ai~~~~t~~grK~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCL--SVEPVETPFGRKRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred eEEEcccccCCchhhhhccCCc--ceeeccccCCccEEECHHHCCCccccccCCCCCC
Confidence 67889999999999997 488 443322 2346799999999999999 99964
No 182
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=96.74 E-value=0.00043 Score=75.50 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=37.8
Q ss_pred ccccccccchhhhcccccceecc---------cccceeecccCCcc--ccchhhcCccCceeee
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTG--CDLCIKKCPVNCISMI 502 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~---------~~~~~~i~~~~C~~--Cg~Cv~~CP~~AI~~~ 502 (582)
....||.||.|+++||.+..... .+.........|+. ||.|..+||++ |.+.
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk-i~l~ 433 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK-YEYG 433 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC-chHH
Confidence 45679999999999999765321 11123345678998 99999999988 5544
No 183
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=96.74 E-value=0.00051 Score=74.75 Aligned_cols=49 Identities=31% Similarity=0.631 Sum_probs=33.4
Q ss_pred eccccccccchhhhcccccceecc------ccc------------ce--eecccCCccccchhhcCccC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGA------AKH------------MH--TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~------~~~------------~~--~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.+..+|+.||.|..+||+-..... ..+ .. ......|..||.|..+||++
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 357899999999999996321100 000 00 01236899999999999997
No 184
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=96.68 E-value=0.00061 Score=72.20 Aligned_cols=51 Identities=29% Similarity=0.654 Sum_probs=33.0
Q ss_pred cccccccchhhhcccccc-ee---c-----cccc-----------ceeecccCCccccchhhcCccCceeee
Q psy9414 451 ENKCIGCTLCIQSCPVDA-II---G-----AAKH-----------MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a-i~---~-----~~~~-----------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.-.||+||+|..+||.-. +- + ..-+ ...-....|..||.|.++||.+ |.+.
T Consensus 307 ~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~-Ipl~ 377 (459)
T COG1139 307 ALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVK-IPLP 377 (459)
T ss_pred HHHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCC-CCHH
Confidence 347999999999999611 10 0 0000 0111246799999999999988 5443
No 185
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.65 E-value=0.00057 Score=74.69 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=38.0
Q ss_pred ccccccccchhhhcccccceecc---------cccceeecccCCcc--ccchhhcCccCceeee
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGA---------AKHMHTIFSKLCTG--CDLCIKKCPVNCISMI 502 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~---------~~~~~~i~~~~C~~--Cg~Cv~~CP~~AI~~~ 502 (582)
....|+.||.|+++||.+..... .+.........|+. ||.|..+||++ |.+.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk-ipL~ 434 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK-YEYG 434 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC-chHH
Confidence 45689999999999999654211 11122356678999 99999999998 5554
No 186
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.60 E-value=0.0012 Score=79.23 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=40.4
Q ss_pred cceeccccccccchhhh--cccccceeccc---ccceeecccCCccccchhh-cCccC
Q psy9414 446 CAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPVN 497 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~--~CP~~ai~~~~---~~~~~i~~~~C~~Cg~Cv~-~CP~~ 497 (582)
.+.||++.|.|||.|.. .||. |.... +....||.+.|.+|+.|++ +||+-
T Consensus 637 r~~In~~vCegCgdC~~~s~C~a--i~p~~t~~grK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLS--VEPVETEFGRKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcc--eeeccccCCccEEECHhHCCCccccccCCCCCc
Confidence 67899999999999997 5884 43222 2346799999999999999 99974
No 187
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=96.55 E-value=0.00084 Score=67.72 Aligned_cols=48 Identities=27% Similarity=0.572 Sum_probs=32.2
Q ss_pred ccccccccchhhhcccccceec----------------cccc------ce----eecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIG----------------AAKH------MH----TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~----------------~~~~------~~----~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
..+.|+.||.|+.+||.-.... +... .. ......|+.||.|..+||.+
T Consensus 145 ~~~~CI~Cg~C~saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 145 QFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred HHHhcCcCccccCcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCC
Confidence 3468999999999999732110 0000 00 01234899999999999987
No 188
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.52 E-value=0.0011 Score=59.41 Aligned_cols=27 Identities=22% Similarity=0.668 Sum_probs=23.4
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
+.++...|++||.|+.+||.+||.+..
T Consensus 68 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 94 (120)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSD 94 (120)
T ss_pred eEecCCcCcChhhhHHhCCcCcEEecc
Confidence 356778999999999999999998754
No 189
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.52 E-value=0.0014 Score=78.42 Aligned_cols=49 Identities=27% Similarity=0.505 Sum_probs=39.7
Q ss_pred cceeccccccccchhhh--cccccceeccc---ccceeecccCCccccchhh-cCcc
Q psy9414 446 CAIIKENKCIGCTLCIQ--SCPVDAIIGAA---KHMHTIFSKLCTGCDLCIK-KCPV 496 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~--~CP~~ai~~~~---~~~~~i~~~~C~~Cg~Cv~-~CP~ 496 (582)
.+.||++.|.|||.|.. .||. |.... +....||.+.|.+|+.|++ +||+
T Consensus 651 r~~In~~vCeGCgdC~~~snC~a--i~p~et~~grK~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 651 RVFINELVCEGCGDCSVQSNCLA--VQPVETEFGRKRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEEcccccCCchhhhhccCCce--eeeccccCCccEEECHhHCCCccccccCCCCC
Confidence 67899999999999997 4883 43222 2346799999999999999 9997
No 190
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.49 E-value=0.0012 Score=55.13 Aligned_cols=25 Identities=40% Similarity=0.856 Sum_probs=23.1
Q ss_pred eccccccccchhhhcccccceeccc
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
+|.+.|-|||.|+.+||+.||.+..
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred eEcccccCceechhhCChhheEeEe
Confidence 8999999999999999999998754
No 191
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.47 E-value=0.0012 Score=40.50 Aligned_cols=20 Identities=40% Similarity=0.869 Sum_probs=17.7
Q ss_pred eeecccCCccccchhhcCcc
Q psy9414 477 HTIFSKLCTGCDLCIKKCPV 496 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~ 496 (582)
..+|.++|++|+.|+.+||.
T Consensus 3 ~~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACPV 22 (22)
T ss_pred eEEccccccCchhHHHhhCc
Confidence 35789999999999999984
No 192
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=96.43 E-value=0.0011 Score=60.51 Aligned_cols=25 Identities=24% Similarity=0.724 Sum_probs=21.5
Q ss_pred ceeccccccccchhhhcccccceec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
..++.+.|++||.|+.+||++|+.+
T Consensus 84 ~~i~~~~C~~Cg~Cv~vCP~~a~~l 108 (133)
T PRK09625 84 KGVDYSHCKGCGVCVEVCPTNPKSL 108 (133)
T ss_pred EEeCcCcCcChhHHHHHCCcCceEE
Confidence 3567889999999999999999654
No 193
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.42 E-value=0.0013 Score=38.05 Aligned_cols=15 Identities=47% Similarity=1.500 Sum_probs=9.3
Q ss_pred ccccccchhhhcccc
Q psy9414 452 NKCIGCTLCIQSCPV 466 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~ 466 (582)
++|++|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 456666666666664
No 194
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=96.42 E-value=0.0013 Score=71.00 Aligned_cols=48 Identities=29% Similarity=0.721 Sum_probs=34.1
Q ss_pred ccccccccchhhhcccccceecc--------ccc---------ceeecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGA--------AKH---------MHTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~--------~~~---------~~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
..+.|++||.|..+||+-..... ..+ ......+.|+.|+.|..+||.+
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSG 69 (396)
T ss_pred chhhcCCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCC
Confidence 35689999999999998654211 000 0012246899999999999998
No 195
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=96.31 E-value=0.0016 Score=68.19 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=32.6
Q ss_pred ccccccchhhhcccccceecccccc------eeecccCC-------------ccccchhhcCccC
Q psy9414 452 NKCIGCTLCIQSCPVDAIIGAAKHM------HTIFSKLC-------------TGCDLCIKKCPVN 497 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai~~~~~~~------~~i~~~~C-------------~~Cg~Cv~~CP~~ 497 (582)
+.|-.|.+|+++||++|+....... .......| .+|+.|..+||.+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc
Confidence 8899999999999999987532110 00011122 3899999999988
No 196
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.28 E-value=0.0019 Score=62.27 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=23.9
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..+|.+.|++||.|+.+||++||.+..
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred eecCcccccCcCchhhhcCCCCeeccc
Confidence 457889999999999999999998754
No 197
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.21 E-value=0.0022 Score=64.83 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=32.5
Q ss_pred ccccccccchhhhccccccee----------------ccc-cc---c---eee----cccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAII----------------GAA-KH---M---HTI----FSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~----------------~~~-~~---~---~~i----~~~~C~~Cg~Cv~~CP~~ 497 (582)
+...||.||.|+.+||..... .+. +. . ..+ ....|+.||.|..+||.+
T Consensus 150 ~~~~CI~CG~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKG 224 (249)
T ss_pred hhhhccCcCcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCC
Confidence 456899999999999964320 011 00 0 001 126799999999999987
No 198
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=96.18 E-value=0.0018 Score=70.01 Aligned_cols=47 Identities=34% Similarity=0.685 Sum_probs=32.4
Q ss_pred cccccccchhhhcccccceec-------c-ccc-c--------eeecccCCccccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIG-------A-AKH-M--------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~-------~-~~~-~--------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
-+.|+.||.|..+||+-.... . .++ . .....+.|..|+.|..+||.+
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred hhhCCCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCC
Confidence 368999999999999742210 0 000 0 011256899999999999998
No 199
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.15 E-value=0.0023 Score=58.31 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.7
Q ss_pred eeccccccccchhhhcccccceecc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.++.+.|++|+.|+.+||++||.+.
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (132)
T TIGR02060 41 NIEPDMCWECYSCVKACPQGAIDVR 65 (132)
T ss_pred ecCchhCccHHHHHHhCCcCceEEE
Confidence 4788999999999999999999875
No 200
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.14 E-value=0.0021 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=23.1
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.+.|++|+.|+.+||.+||.+.
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred EEECchhCCCcCchhhhcCcCcEEEe
Confidence 46788999999999999999999764
No 201
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.12 E-value=0.0019 Score=64.80 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=32.3
Q ss_pred ccccccccchhhhcccccceecc-----------------ccc---c---e----eecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGA-----------------AKH---M---H----TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~-----------------~~~---~---~----~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
+...|+.||.|..+||....... ... . . ......|+.||.|..+||.+
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 139 GLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKG 213 (232)
T ss_pred hHHhccccccccccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCC
Confidence 45689999999999996421100 000 0 0 00235899999999999987
No 202
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.06 E-value=0.0025 Score=66.79 Aligned_cols=21 Identities=38% Similarity=0.903 Sum_probs=17.5
Q ss_pred ccCCccccchhhcCccCceeee
Q psy9414 481 SKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 481 ~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
...|++||.|+.+||.+ |.+.
T Consensus 300 ~~~CvgCGrC~~~CP~~-idi~ 320 (334)
T TIGR02910 300 YHMCVGCGRCDDICPEY-ISFS 320 (334)
T ss_pred ccccCCcCchhhhCCCC-CCHH
Confidence 45699999999999998 5554
No 203
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.05 E-value=0.0024 Score=48.62 Aligned_cols=20 Identities=50% Similarity=1.315 Sum_probs=15.5
Q ss_pred ccccccccchhhhcccccce
Q psy9414 450 KENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai 469 (582)
+.++|++||.|+.+||++||
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 56799999999999999987
No 204
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=95.96 E-value=0.0044 Score=69.26 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=85.3
Q ss_pred CCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEE--ecCcccccChHHHHHH
Q psy9414 7 KDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHS--ICTLEFQDHRPFYEWI 84 (582)
Q Consensus 7 ~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githv--ir~~e~~~~~~~~~~l 84 (582)
.+|..++++.- ..+ -.|.|+.|.++++.+.|- |.|..++-+.. .+++ +.|.||..+.++...+
T Consensus 229 ~~Ga~~~~~~~---~~~--~~~~vl~ksdG~~~Y~t~---------Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~ 293 (507)
T PRK01611 229 SDGALWVRLTE---FGD--DKDRVLIKSDGTYTYFTR---------DIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAA 293 (507)
T ss_pred eCCcEEEEchh---hCC--CCCeEEEECCCCccchHH---------HHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHH
Confidence 46777765431 111 138999999987332222 34444433332 4566 7899999999999999
Q ss_pred HHHcCCCCCCCCCCCc---eeE--eecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCH---------
Q psy9414 85 LNKIDKTNFIKRPFPK---QYE--FSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTP--------- 149 (582)
Q Consensus 85 ~~~l~~~~~~~~~~p~---~~~--~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p--------- 149 (582)
.++||+ .++. +.| ||.+ +-+|.+||||++. ..++..|.+.++..
T Consensus 294 ~~~lg~------~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn---------------~i~l~dll~~a~g~~~~~~~~~~ 352 (507)
T PRK01611 294 LKALGY------DPDALEVLLHQMVGLVRGGEGVKMSTRAGN---------------VVTLDDLLDEAVGRARELIEEKE 352 (507)
T ss_pred HHHcCC------CcccceEEEEEEEEeeECCCCCcccCCCCc---------------eeEHHHHHHHHHHHHHHHHHhhh
Confidence 999998 5332 445 4544 3357899999963 34677766665544
Q ss_pred -------HHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 150 -------ESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 150 -------~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.||+=|+... -..++..|||+++..+++
T Consensus 353 ~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~~~~~~~ 387 (507)
T PRK01611 353 IAEAVGIDAVRYFDLSR-SRDKDLDFDLDLALSFEG 387 (507)
T ss_pred hhhhhccceeEehhhhc-CCCCCCccCHHHHHhhcC
Confidence 4554444433 345677899998776653
No 205
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=95.91 E-value=0.004 Score=59.91 Aligned_cols=49 Identities=22% Similarity=0.522 Sum_probs=39.6
Q ss_pred cccchhhhcccccceeccc--ccceeecccCCccccchhhcCccCceeeee
Q psy9414 455 IGCTLCIQSCPVDAIIGAA--KHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 455 i~Cg~Cv~~CP~~ai~~~~--~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..+|.+...+|+..+.... .+...++.+.|++|+.|+.+||++||.+..
T Consensus 9 ~~~g~~T~~yP~~~~~~~~~~rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~ 59 (180)
T PRK12387 9 IKTGTATSSYPLEPIAVDKNFRGKPEYNPQQCIGCAACVNACPSNALTVET 59 (180)
T ss_pred HhcCCccccCCCCCCCCCCCCCCceEEChhhCcChhHHHHhcCccCeEeec
Confidence 4567888899988776543 245678899999999999999999998754
No 206
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=95.87 E-value=0.0037 Score=63.24 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=32.4
Q ss_pred ccccccccchhhhccccccee------ccc------------c-----c---cee--ecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAII------GAA------------K-----H---MHT--IFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~------~~~------------~-----~---~~~--i~~~~C~~Cg~Cv~~CP~~ 497 (582)
....||.||.|+.+||+-... +.+ + + ... .....|..|+.|..+||.+
T Consensus 140 ~~~~CI~CG~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVCPEH 215 (251)
T ss_pred chhhcccCCcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcCCCC
Confidence 456899999999999964321 000 0 0 000 1245699999999999988
No 207
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=95.87 E-value=0.0079 Score=43.26 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.8
Q ss_pred HHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcc
Q psy9414 398 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII 432 (582)
Q Consensus 398 ~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~ 432 (582)
+...+++|+.+|.+|+.+|.|+||.++..+|+...
T Consensus 5 lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~ 39 (41)
T PF10588_consen 5 LELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQ 39 (41)
T ss_dssp HHHHHTT----TTT-TTGGG-HHHHHHHHH-S---
T ss_pred HHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcC
Confidence 46778899999999999999999999999987543
No 208
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=95.87 E-value=0.0035 Score=66.06 Aligned_cols=20 Identities=40% Similarity=1.059 Sum_probs=16.8
Q ss_pred cCCccccchhhcCccCceeee
Q psy9414 482 KLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 482 ~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..|++||.|..+||.+ |.+.
T Consensus 307 ~~CvgCGrC~~~CP~~-I~i~ 326 (344)
T PRK15055 307 HMCVGCGRCDDRCPEY-ISFS 326 (344)
T ss_pred hhCcCcCccccccCCC-CCHH
Confidence 5799999999999997 5543
No 209
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=95.86 E-value=0.0029 Score=66.75 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=32.1
Q ss_pred cccccccchhhhccccccee--------------c--cccc---c---eeec-----ccCCccccchhhcCccCc
Q psy9414 451 ENKCIGCTLCIQSCPVDAII--------------G--AAKH---M---HTIF-----SKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~--------------~--~~~~---~---~~i~-----~~~C~~Cg~Cv~~CP~~A 498 (582)
...|+.||.|..+||..... + +... . ..++ ...|+.|+.|..+||.+.
T Consensus 151 ~~~Ci~CG~C~s~CP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 151 TGNCILCGACYSECNAREVNPEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred hhhCcccCcccccCCCCCcCcCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCC
Confidence 46799999999999964211 0 0000 0 0111 357999999999999873
No 210
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.83 E-value=0.0054 Score=58.07 Aligned_cols=27 Identities=37% Similarity=0.811 Sum_probs=23.5
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..++...|++||.|+.+||++||.+..
T Consensus 92 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~ 118 (164)
T PRK05888 92 YDINFGRCIFCGFCEEACPTDAIVETP 118 (164)
T ss_pred eecCCCcCcccCcchhhcCcCcceecC
Confidence 357889999999999999999998753
No 211
>KOG0063|consensus
Probab=95.83 E-value=0.0045 Score=65.89 Aligned_cols=56 Identities=43% Similarity=0.924 Sum_probs=27.1
Q ss_pred cceecccccc--cc-chhhhccccc-----ceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCI--GC-TLCIQSCPVD-----AIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci--~C-g~Cv~~CP~~-----ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.++..++|- .| ..|.++||+. +|.+... ..+....|++||.|+..||.+||....
T Consensus 8 iaiv~~d~ckpk~c~~eck~~cpv~~~gk~ci~V~~~--~~ise~lCigcgicvkkcpf~ai~iin 71 (592)
T KOG0063|consen 8 IAIVSEDKCKPKKCRQECKKSCPVVRTGKLCIEVTPT--AFISEELCIGCGICVKKCPFEAIQIIN 71 (592)
T ss_pred EEEeeccccCchHHHHHHHhcCCcccccceEEEEcCc--chhhHhhhccccceeeccCcceEEecC
Confidence 3444555553 35 2466666642 2222211 233444566666666666666655543
No 212
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.80 E-value=0.0035 Score=47.19 Aligned_cols=20 Identities=40% Similarity=1.130 Sum_probs=14.0
Q ss_pred cceeccccccccchhhhccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCP 465 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP 465 (582)
...++..+|++||.|+.+||
T Consensus 33 ~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 33 KVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp SEEE-TTT--TTSHHHHH-T
T ss_pred CeEeCcccccccChhhhhCc
Confidence 45668999999999999998
No 213
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.80 E-value=0.0043 Score=54.26 Aligned_cols=27 Identities=33% Similarity=0.785 Sum_probs=23.8
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
+.+|.+.|.+|+.|+.+||.+||.+..
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTKAITMVK 102 (105)
T ss_pred EEeCchhCcCcchhhhhcCcCcEEecc
Confidence 467889999999999999999998753
No 214
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=95.78 E-value=0.0045 Score=62.25 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=32.8
Q ss_pred eccccccccchhhhccccccee----------------ccccc------c-ee----ecccCCccccchhhcCccC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAII----------------GAAKH------M-HT----IFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~----------------~~~~~------~-~~----i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.....|+.||.|..+||..... .+... . .. .....|+.||.|.++||.+
T Consensus 146 ~~~~~CI~Cg~C~saCP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 146 YELDRCIECGCCVAACGTKQMREDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKD 221 (239)
T ss_pred hchhhccccchhHhhCCCCccCCCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCC
Confidence 3456899999999999953211 01110 0 00 1235899999999999987
No 215
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=95.75 E-value=0.0049 Score=59.89 Aligned_cols=26 Identities=35% Similarity=0.884 Sum_probs=22.8
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.++|++||.|+.+||++||.+.
T Consensus 139 ~~v~~~~C~~Cg~Cv~vCP~~AI~~~ 164 (191)
T PRK05113 139 HTVISDLCTGCDLCVAPCPTDCIEMI 164 (191)
T ss_pred eeecCCcCCchHHHHHHcCcCceEEe
Confidence 35677899999999999999999865
No 216
>PRK06273 ferredoxin; Provisional
Probab=95.73 E-value=0.0035 Score=59.35 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=22.6
Q ss_pred cceeccccccccchhhhcccccceec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
...+|..+|++|+.|+.+||++||..
T Consensus 85 ~~~Id~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 85 IPKIDYEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred ceecccccCcCCCCcchhCCHhheec
Confidence 35678899999999999999999843
No 217
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=95.72 E-value=0.004 Score=65.01 Aligned_cols=47 Identities=32% Similarity=0.642 Sum_probs=35.3
Q ss_pred eccccccccchhhhcccccceecccccceeecccCCccccchhhcCcc
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 496 (582)
++...|++||.|+.+||. +|.+.......+..-.|.+|+.|..+||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~~~~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDEAPLLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEecccchhhhhhhcccchHHhhhCcc
Confidence 467899999999999999 88765443333334455667799999993
No 218
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=95.71 E-value=0.004 Score=66.78 Aligned_cols=29 Identities=41% Similarity=0.925 Sum_probs=25.1
Q ss_pred cccceeccccccccchhhhcccccceecc
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.+++.++.|+|||.|++.||++||.+.
T Consensus 42 ~gkpvIsE~lCiGCGICvkkCPF~AI~Iv 70 (591)
T COG1245 42 TGKPVISEELCIGCGICVKKCPFDAISIV 70 (591)
T ss_pred CCCceeEhhhhccchhhhccCCcceEEEe
Confidence 44558889999999999999999999764
No 219
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.69 E-value=0.005 Score=50.53 Aligned_cols=27 Identities=37% Similarity=0.738 Sum_probs=23.1
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..++.+.|++|+.|+.+||.+||.+..
T Consensus 50 ~~i~~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 50 VGIDYDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEecCccCcCccchhhhCCccccEecc
Confidence 456778999999999999999988653
No 220
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=95.68 E-value=0.0028 Score=54.12 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.9
Q ss_pred Ccccceeccccccccchhhhcccccce
Q psy9414 443 SRCCAIIKENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 443 ~~~~~~id~~~Ci~Cg~Cv~~CP~~ai 469 (582)
..+.+.+|.++|++||.|+.+||.+++
T Consensus 52 e~G~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 52 DDGSVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred CCCCEEEcCCCCCcchhhhhhcCCCCc
Confidence 456889999999999999999998864
No 221
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=95.64 E-value=0.0056 Score=62.25 Aligned_cols=46 Identities=24% Similarity=0.469 Sum_probs=34.2
Q ss_pred ccccchhhhcccccceeccccc----ceee-cccCCccccchhhcCccCce
Q psy9414 454 CIGCTLCIQSCPVDAIIGAAKH----MHTI-FSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~ai~~~~~~----~~~i-~~~~C~~Cg~Cv~~CP~~AI 499 (582)
-..++-|...||.|++...... .... +.++|++|+.|+++||.+++
T Consensus 168 ~~~r~~C~~~CP~Ga~~~~~~~~~~~~i~~~~~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 168 FSERGWCGHLCPLGAFYGLIGRKSLIKIAASDREKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred hcCCchhhCcCCCcchhhhhhccCceEEEeeccccCeEcCCccCcCCCCce
Confidence 4567899999999998532111 1223 37899999999999999874
No 222
>PRK06991 ferredoxin; Provisional
Probab=95.59 E-value=0.034 Score=56.90 Aligned_cols=27 Identities=41% Similarity=0.936 Sum_probs=23.3
Q ss_pred eeecccCCccccchhhcCccCceeeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..++.+.|++||.|+.+||+++|.+..
T Consensus 80 ~~id~~~CigCg~Cv~aCP~~AI~~~~ 106 (270)
T PRK06991 80 AVIDEQLCIGCTLCMQACPVDAIVGAP 106 (270)
T ss_pred eEEccccCCCCcHHHHhCCHhheeccc
Confidence 457788999999999999999997653
No 223
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=95.57 E-value=0.0053 Score=58.20 Aligned_cols=26 Identities=35% Similarity=0.948 Sum_probs=22.8
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.++|++||.|+.+||++||.+.
T Consensus 138 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 138 HTVIADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEeecccccChhHHHHhcCcCceEee
Confidence 35678999999999999999999764
No 224
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=95.57 E-value=0.0055 Score=61.42 Aligned_cols=48 Identities=21% Similarity=0.444 Sum_probs=32.1
Q ss_pred ccccccccchhhhcccccceec-----------------cccc---c---eee----cccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIG-----------------AAKH---M---HTI----FSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~-----------------~~~~---~---~~i----~~~~C~~Cg~Cv~~CP~~ 497 (582)
+...|+.||.|..+||.-.... +... . ..+ ....|..||.|..+||.+
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 142 GLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKG 216 (235)
T ss_pred hhhhCcccccccccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCC
Confidence 4567999999999999632110 0000 0 001 134899999999999987
No 225
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.55 E-value=0.0063 Score=35.16 Aligned_cols=16 Identities=38% Similarity=1.232 Sum_probs=13.9
Q ss_pred cCCccccchhhcCccC
Q psy9414 482 KLCTGCDLCIKKCPVN 497 (582)
Q Consensus 482 ~~C~~Cg~Cv~~CP~~ 497 (582)
+.|++|+.|+.+||.+
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 5799999999999974
No 226
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=95.53 E-value=0.0028 Score=69.11 Aligned_cols=47 Identities=34% Similarity=0.776 Sum_probs=33.0
Q ss_pred cccccccchhhhcccccceecc-----cccce---eecccCCccccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGA-----AKHMH---TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~-----~~~~~---~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
..+|.+||.|..+||...-..+ .++.. .--.+.|++|+.|.++||.+
T Consensus 399 a~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 399 ARKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHhcccccchhccCCcccchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 4789999999999996432211 11110 11146899999999999987
No 227
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.46 E-value=0.0063 Score=57.85 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=23.5
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..+|.+.|++||.|+.+||.+||.+..
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCC
Confidence 456788999999999999999998753
No 228
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.41 E-value=0.012 Score=67.67 Aligned_cols=20 Identities=30% Similarity=0.768 Sum_probs=17.1
Q ss_pred eccccccccchhhhcccccc
Q psy9414 449 IKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~a 468 (582)
++...|+.||.|..+||.+.
T Consensus 406 ~~~~~CieCG~C~~vCPs~I 425 (695)
T PRK05035 406 YNLFDCIECGACAYVCPSNI 425 (695)
T ss_pred cChhhccccCcccccCCCCC
Confidence 45578999999999999874
No 229
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=95.39 E-value=0.0067 Score=65.85 Aligned_cols=47 Identities=26% Similarity=0.786 Sum_probs=31.6
Q ss_pred cccccccchhhhcccccceec----cc-----------ccce-----eecccCCccccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIG----AA-----------KHMH-----TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~----~~-----------~~~~-----~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.+.|++||.|..+||.-.... .. .+.. .-....|+.|+.|..+||.+
T Consensus 22 ~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 22 LRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSG 88 (407)
T ss_pred HHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCC
Confidence 358999999999999522110 00 0000 01245899999999999997
No 230
>PRK13409 putative ATPase RIL; Provisional
Probab=95.36 E-value=0.0061 Score=69.38 Aligned_cols=29 Identities=41% Similarity=0.924 Sum_probs=25.3
Q ss_pred cccceeccccccccchhhhcccccceecc
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
...+.+.++.|+|||.||+.||++||.+.
T Consensus 41 ~~~~~~~e~~c~~c~~c~~~cp~~a~~i~ 69 (590)
T PRK13409 41 DGKPVISEELCIGCGICVKKCPFDAISIV 69 (590)
T ss_pred CCCceeeHhhccccccccccCCcceEEEe
Confidence 34678899999999999999999999753
No 231
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=95.36 E-value=0.0071 Score=60.18 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=32.2
Q ss_pred ccccccccchhhhcccccceec----------------ccc--c-c---ee----ecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIG----------------AAK--H-M---HT----IFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~----------------~~~--~-~---~~----i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.-..||.||.|..+||.-.... +.. + . .. .....|..|+.|+++||.+
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred hhhhccccchhhhhCCccccccCCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCC
Confidence 3468999999999999632211 110 0 0 00 0135799999999999998
No 232
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=95.30 E-value=0.007 Score=67.32 Aligned_cols=48 Identities=27% Similarity=0.653 Sum_probs=33.0
Q ss_pred ccccccccchhhhccccccee---------------cccccc-------eeecccCCccccchhhcCccC
Q psy9414 450 KENKCIGCTLCIQSCPVDAII---------------GAAKHM-------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~---------------~~~~~~-------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
+...|+.||.|..+||+-... .+.... .......|+.||.|..+||.+
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKE 200 (486)
T ss_pred CchhcccCccccccCCCCccccCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCC
Confidence 457899999999999975321 000000 011246799999999999987
No 233
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.30 E-value=0.0063 Score=54.50 Aligned_cols=26 Identities=42% Similarity=0.842 Sum_probs=23.0
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.+.|++||.|+.+||.+++.+.
T Consensus 77 ~~~~~~~C~~Cg~Cv~~CP~~al~~~ 102 (122)
T TIGR01971 77 YQINFGRCIFCGLCEEACPTDAIVLT 102 (122)
T ss_pred ceECcccCCCCCchhhhCCCcccccc
Confidence 45788999999999999999998765
No 234
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=95.27 E-value=0.0071 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.842 Sum_probs=22.5
Q ss_pred eeccccccccchhhhcccccceecc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.++.+.|++||.|+.+||++||.+.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ecCCccCcChhhhhhhCCHhHEecC
Confidence 5788999999999999999999763
No 235
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=95.26 E-value=0.01 Score=64.51 Aligned_cols=25 Identities=36% Similarity=0.934 Sum_probs=22.2
Q ss_pred ceeccccccccchhhhcccccceec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
..++.++|++|+.|+.+||++||..
T Consensus 34 ~~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 34 YVVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eEeCcccCcCHHHHHhhcCccccee
Confidence 3568899999999999999999974
No 236
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=95.25 E-value=0.007 Score=64.03 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=24.8
Q ss_pred cccceeccccccccchhhhcccccceec
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.+.+.+|.++|++||.|+.+||++|+..
T Consensus 206 ~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~ 233 (341)
T TIGR02066 206 NKSLEVDVEKCIYCGNCYTMCPAMPIFD 233 (341)
T ss_pred CCceeeccccCCcCCchHHhCchhhccC
Confidence 4567899999999999999999999863
No 237
>PRK02651 photosystem I subunit VII; Provisional
Probab=95.25 E-value=0.014 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.767 Sum_probs=21.4
Q ss_pred eeccccccccchhhhcccccceecc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..+...|++|+.|+.+||.++|.+.
T Consensus 42 ~~~~~~C~~Cg~C~~~CP~~ai~~~ 66 (81)
T PRK02651 42 SPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred cCCCCcCCChhhhhhhcCCCceEEE
Confidence 3466899999999999999999863
No 238
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.22 E-value=0.0092 Score=62.50 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=22.4
Q ss_pred eeccccccccchhhhcccccceeccc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
.+|...|.+|+.|+.+||++||.+..
T Consensus 285 ~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 285 DFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred cCCcccCcCcCchhhhCCHhheEecc
Confidence 45678999999999999999998753
No 239
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=95.20 E-value=0.0081 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.964 Sum_probs=16.5
Q ss_pred ccceeccccccccchhhhcccccc
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~a 468 (582)
..+.++.++|++||.|+.+||++|
T Consensus 29 ~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 29 PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp TTSEETGGG----SHHHHHTTTS-
T ss_pred eEEEEechhCcCcChhhhhCcCcC
Confidence 355788999999999999999986
No 240
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=95.15 E-value=0.009 Score=61.13 Aligned_cols=46 Identities=24% Similarity=0.484 Sum_probs=30.8
Q ss_pred ccccccchhhhccccccee---------------c--cccc---c---eee----cccCCccccchhhcCccC
Q psy9414 452 NKCIGCTLCIQSCPVDAII---------------G--AAKH---M---HTI----FSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai~---------------~--~~~~---~---~~i----~~~~C~~Cg~Cv~~CP~~ 497 (582)
..|+.||.|..+||.-... + +... . ..+ ....|..|+.|..+||.+
T Consensus 187 ~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 187 YECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKG 259 (276)
T ss_pred hhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCC
Confidence 4799999999999952110 0 1000 0 001 236899999999999987
No 241
>KOG0063|consensus
Probab=95.12 E-value=0.0056 Score=65.16 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=43.3
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
..+.+..|+|||.|++.||+.||.+.+-.........|..|+.|...|+-.+...
T Consensus 45 ~~ise~lCigcgicvkkcpf~ai~iinlp~nl~~etthry~~n~fKlhrlp~prp 99 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEAIQIINLPTNLEKETTHRYSANSFKLHRLPIPRP 99 (592)
T ss_pred chhhHhhhccccceeeccCcceEEecCCchhHhhhhhhhhcccceeeccCCCCCc
Confidence 4567789999999999999999987654333345667999999999998776443
No 242
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=95.10 E-value=0.009 Score=63.13 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=33.3
Q ss_pred cccccccchhhhcccccceeccccc-----ceeecccCCccccchhhcCccCce
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAKH-----MHTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~~-----~~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
-+.|.+|+.|...||.-- .+.... ....-.+.|..||.|...||..+-
T Consensus 13 l~iC~~C~~C~~~CpvfP-a~~~~~~~~~~d~~~la~lChnC~~C~~~CPy~pP 65 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVFP-AAQGRPDLTRGDLRHLAHLCHDCQSCWHDCQYAPP 65 (372)
T ss_pred hHhCcCcCCccccCCCcc-ccccccccCHHHHHHHHHHCcCcccccccCcCCCC
Confidence 478999999999999731 111110 001124689999999999999764
No 243
>PRK08764 ferredoxin; Provisional
Probab=95.08 E-value=0.011 Score=54.15 Aligned_cols=25 Identities=40% Similarity=0.927 Sum_probs=21.8
Q ss_pred ceeccccccccchhhhcccccceec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
..++.++|++||.|+.+||++||.+
T Consensus 110 ~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 110 HTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred eeecCCcCcCccchhhhcCccceEe
Confidence 3567789999999999999999865
No 244
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=95.07 E-value=0.0073 Score=61.96 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=34.3
Q ss_pred cccchhhhcccccceecccc--c--cee-ecccCCccccchhhcCccCcee
Q psy9414 455 IGCTLCIQSCPVDAIIGAAK--H--MHT-IFSKLCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 455 i~Cg~Cv~~CP~~ai~~~~~--~--~~~-i~~~~C~~Cg~Cv~~CP~~AI~ 500 (582)
+..+-|...||.|++..... . ... ++.++|++|+.|+.+||.+++.
T Consensus 176 ~~r~wC~~lCP~Ga~~~~~~~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 176 VEHGWCGHLCPLGAFYGLIGKKSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred cCCchhhccCCHHHHHHhcccccccccccCCcccCcccCCcCCcCCCccee
Confidence 34678999999998753211 1 123 6788999999999999998753
No 245
>KOG3256|consensus
Probab=95.02 E-value=0.0087 Score=55.30 Aligned_cols=27 Identities=44% Similarity=0.903 Sum_probs=23.6
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
.-+|..+||-||.|+++||++||....
T Consensus 145 YdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 145 YDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred ecccceeeeeecchhhhCCccceeccC
Confidence 357889999999999999999998643
No 246
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=95.00 E-value=0.013 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.681 Sum_probs=23.6
Q ss_pred eeccccccccchhhhcccccceecccc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAK 474 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~ 474 (582)
.++.++|++|+.|+.+||.+|+.+..+
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeChHhCcChHHHHhhCCccceEEeCC
Confidence 467889999999999999999988644
No 247
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.97 E-value=0.0065 Score=66.31 Aligned_cols=27 Identities=37% Similarity=0.936 Sum_probs=23.7
Q ss_pred ceeccccccccchhhhcccc-cceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPV-DAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~-~ai~~~~ 473 (582)
..++.++|++|+.|+.+||. +||.+..
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred EEechhhCcccchHHhhCCCCCCEEEec
Confidence 46788999999999999999 9997753
No 248
>COG1146 Ferredoxin [Energy production and conversion]
Probab=94.95 E-value=0.011 Score=47.35 Aligned_cols=28 Identities=36% Similarity=0.767 Sum_probs=24.4
Q ss_pred cceeccccccccchhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
.+.++.+.|++||.|+.+||.+||.+..
T Consensus 35 ~~~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 35 PVVARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred eeEeccccCccchhhhhhCCcceEEEec
Confidence 4577899999999999999999998753
No 249
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=94.91 E-value=0.013 Score=63.30 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=36.4
Q ss_pred eecccccc-ccchhhhcccccce---ecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 448 IIKENKCI-GCTLCIQSCPVDAI---IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 448 ~id~~~Ci-~Cg~Cv~~CP~~ai---~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..|...|. +|..|.+.||.... .+...+....+...|+.|+.|+++||.....+..
T Consensus 207 ~~~~~~~~~r~~~c~k~cp~~~~~~v~v~p~~~~~~~~~~CI~C~~CidaCd~~~~~~~~ 266 (386)
T COG0348 207 NYDDKRGCPRCKRCKKVCPEPIPLWVQVCPAGIDIRDGLECIGCGRCIDACDDDMLKFNL 266 (386)
T ss_pred ecccccCCcccccccccCCccccceeEecccccccccccccccHhhHhhhCCHHhheecc
Confidence 33444444 79999999997653 2222222111222599999999999988777653
No 250
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=94.89 E-value=0.0071 Score=64.91 Aligned_cols=48 Identities=23% Similarity=0.613 Sum_probs=33.8
Q ss_pred cccccccchhhhccccccee--cccccc---------------e--eecccCCccccchhhcCccCc
Q psy9414 451 ENKCIGCTLCIQSCPVDAII--GAAKHM---------------H--TIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~--~~~~~~---------------~--~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
.++|++||.|..+||+-... ....+. . .-....|..|+.|+..||.+.
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHhcCCCCcccCcCCCccccCCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCC
Confidence 46899999999999985543 111110 0 011357999999999999983
No 251
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=94.87 E-value=0.011 Score=64.51 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=33.7
Q ss_pred ccccchhhhccccccee---cccccc-eeec---------------------ccCCccccchhhcCccCceee
Q psy9414 454 CIGCTLCIQSCPVDAII---GAAKHM-HTIF---------------------SKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~ai~---~~~~~~-~~i~---------------------~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
...+.-|..+||++++. .+.+.. ..++ .+.|++|+.|+++||++ |..
T Consensus 178 ~~re~~C~~~CP~g~~qs~m~d~~tl~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~g-i~~ 249 (434)
T TIGR02745 178 WMREQFCIYMCPYARIQSVMFDKDTLIVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTG-IDI 249 (434)
T ss_pred eeccchhhhhCCHHHHHHHhccCCcceEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCC-CEe
Confidence 77889999999998875 221111 1111 46899999999999999 444
No 252
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=94.87 E-value=0.0094 Score=57.12 Aligned_cols=47 Identities=23% Similarity=0.597 Sum_probs=33.3
Q ss_pred cccccccchhhhcccccceecccc----------c-----ceeecccCCccccchhhcCccCc
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAK----------H-----MHTIFSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~----------~-----~~~i~~~~C~~Cg~Cv~~CP~~A 498 (582)
-..|.+||.|..+||.+-.. +.. + ...-..-.|+.|..|.+.||.+-
T Consensus 38 l~~C~QCG~CT~sCPs~r~t-~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v 99 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFT-DYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGV 99 (195)
T ss_pred HhHhhccCcccCCCCCcccC-CCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCC
Confidence 45699999999999986542 111 0 01122347999999999999884
No 253
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=94.84 E-value=0.11 Score=55.22 Aligned_cols=88 Identities=11% Similarity=-0.005 Sum_probs=68.6
Q ss_pred cCCCcEEecCcccccC---hHHHHHHHH-HcCCCCCCCCCCCceeEeecccCCCc-cccccchhhhccccccCCCCCCCc
Q psy9414 62 IENITHSICTLEFQDH---RPFYEWILN-KIDKTNFIKRPFPKQYEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPRM 136 (582)
Q Consensus 62 ~~githvir~~e~~~~---~~~~~~l~~-~l~~~~~~~~~~p~~~~~~~l~~~~~-~lSKr~~~~~v~~~~v~gwdDpr~ 136 (582)
.+||+-=.=|.||..+ ...-..+.+ .||+ ..|....|+.+.+.+. |||||+.+.
T Consensus 225 ~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~------~~P~~~~ye~V~l~gg~KMSKSkGnv--------------- 283 (353)
T cd00674 225 ILGVDFEPFGKDHASAGGSYDTGKEIAREIFGG------EPPVPVMYEFIGLKGGGKMSSSKGNV--------------- 283 (353)
T ss_pred hcCCCEEeeCccccccccHHHHHHHHHHHHhCC------CCCeEEEeeeEEeCCCCccCCCCCCc---------------
Confidence 5677777889999888 888888888 9999 8888888888877765 999998533
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHH
Q psy9414 137 PTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE 171 (582)
Q Consensus 137 ~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~ 171 (582)
.|+..+.+. +.|++|+=|+........+..||++
T Consensus 284 I~~~dll~~-~~~dalR~~~l~~~~~~~~i~Fd~~ 317 (353)
T cd00674 284 ITPSDWLEV-APPEVLRYLYARRKNPEKHIGFDLD 317 (353)
T ss_pred CCHHHHHHH-hChHHHHHHHHhCCCCCCCCCcChh
Confidence 367777766 8899999888877734445677764
No 254
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=94.77 E-value=0.0077 Score=47.83 Aligned_cols=21 Identities=33% Similarity=0.880 Sum_probs=19.2
Q ss_pred CCccccchhhcCccCceeeee
Q psy9414 483 LCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 483 ~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.|..|+.|+++||++||+...
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~ 21 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGED 21 (67)
T ss_pred CCcchhHHHHhCcHhhccCCC
Confidence 499999999999999999883
No 255
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=94.74 E-value=0.0094 Score=63.26 Aligned_cols=46 Identities=22% Similarity=0.550 Sum_probs=31.8
Q ss_pred ccccccccchhhhcccccceeccccc-ceeec----ccCCccccchhhcCcc
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGAAKH-MHTIF----SKLCTGCDLCIKKCPV 496 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~~~~-~~~i~----~~~C~~Cg~Cv~~CP~ 496 (582)
..+.|.+|+.|...||.- ..+.... ....+ .+.|..||.|...||.
T Consensus 31 ~~~iC~~Cr~C~~~Cpvf-P~l~~r~~~~~~d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 31 QMQICNACRYCEGFCAVF-PAMTRRLEFGKADIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred HhHhCCCCCCccccCCCc-hhhhhhhcCChhhhHHHHHhCcCcccccccCcC
Confidence 357899999999999973 1111110 11111 3489999999999998
No 256
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=94.50 E-value=0.014 Score=61.28 Aligned_cols=28 Identities=32% Similarity=0.775 Sum_probs=24.4
Q ss_pred cceeccccccccchhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
.+.+|.+.|++||.|+.+||++|+....
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHhhcccCc
Confidence 3567999999999999999999997654
No 257
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.47 E-value=0.013 Score=49.90 Aligned_cols=25 Identities=44% Similarity=1.064 Sum_probs=22.3
Q ss_pred eecccCCccccchhhcCccCceeee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.++...|++||.|+.+||++||.+.
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~ 49 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELI 49 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcc
Confidence 4677889999999999999999883
No 258
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=94.42 E-value=0.019 Score=60.15 Aligned_cols=47 Identities=28% Similarity=0.729 Sum_probs=32.0
Q ss_pred cccccchhhhccccccee------------ccc------------cc-----ceeecccCCccccchhhcCccCceee
Q psy9414 453 KCIGCTLCIQSCPVDAII------------GAA------------KH-----MHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~------------~~~------------~~-----~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
.|++|+.|+- ||.+.-. ++. .+ ....+.+.|+.||.|.+.||.+ |.+
T Consensus 294 ~Ct~C~yC~P-CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~CPq~-l~I 369 (391)
T COG1453 294 PCTGCRYCLP-CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKCPQH-LDI 369 (391)
T ss_pred CCccccccCc-CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccchhhhhhhcCCCc-CcH
Confidence 3999999999 9986411 000 00 0123467899999999999987 443
No 259
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.34 E-value=0.018 Score=65.31 Aligned_cols=26 Identities=35% Similarity=0.792 Sum_probs=23.7
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
+.++.++|++|+.|+.+||.+||.+.
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 561 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPCGAIEMG 561 (564)
T ss_pred EEEecccCcChhHHHhhcCcCceEec
Confidence 56889999999999999999999874
No 260
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.34 E-value=0.016 Score=64.58 Aligned_cols=28 Identities=36% Similarity=0.705 Sum_probs=24.4
Q ss_pred cceeccccccccchhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
...+|+..|+|||.|+.+||..+|....
T Consensus 602 k~~id~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 602 KARIDPSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred ceeecccccccchhhhhcCchhheeccc
Confidence 4678999999999999999999987643
No 261
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=94.18 E-value=0.08 Score=56.89 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=87.1
Q ss_pred CCCcEEEEecCCCccccCCee-eeecccc----------cccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCC
Q psy9414 26 MRDPIIYRIRHVNHYRTNNNW-CIYPMYD----------YAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFI 94 (582)
Q Consensus 26 ~~D~v~~R~~~~~H~~~g~k~-~~~P~Y~----------fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~ 94 (582)
-+|+++.|....-+|.=-+.| .+.|-.| |...+|=|.=|+.+++ =|+.|.-.|...+ +|-
T Consensus 172 p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F---PHHeneiaq~~a~--~g~---- 242 (384)
T PRK12418 172 PLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIF---PHHEFSAAHAEAA--TGE---- 242 (384)
T ss_pred cccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCcccccc---chhHhHHHHHHHh--cCC----
Confidence 369999997653344444455 4667654 5556777777888775 3555555554322 332
Q ss_pred CCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHH
Q psy9414 95 KRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILE 174 (582)
Q Consensus 95 ~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~ 174 (582)
.+..-+++|-+.|..+|.||||+..+ ..|+..+.+.|+.|+++|-|+. .+--+++..|+++.|.
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~ 306 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLA 306 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHH
Confidence 00112455556899999999999853 4578888888999999998886 4444567788888877
Q ss_pred HHHHHhhhcc
Q psy9414 175 QALRDDLDIK 184 (582)
Q Consensus 175 ~~~~~~l~~~ 184 (582)
.. ++.|+..
T Consensus 307 ~a-~~~l~r~ 315 (384)
T PRK12418 307 EA-EARLARW 315 (384)
T ss_pred HH-HHHHHHH
Confidence 64 4444443
No 262
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=94.11 E-value=0.02 Score=58.27 Aligned_cols=27 Identities=37% Similarity=0.865 Sum_probs=23.5
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.|+.++|++|+.|..+||++|+...
T Consensus 215 ~~~I~~~~ci~c~~c~~ac~~gav~~~ 241 (354)
T COG2768 215 VVKIDYEKCIGCGQCMEACPYGAVDQN 241 (354)
T ss_pred ceeechhhccchhhhhhhccCcccccc
Confidence 457899999999999999999998643
No 263
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=94.06 E-value=0.025 Score=49.20 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=24.5
Q ss_pred cceeecccCCccccchhhcCccCceeeee
Q psy9414 475 HMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 475 ~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+...++.+.|++|+.|+.+||+++|.+..
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhcccc
Confidence 34567889999999999999999987754
No 264
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=93.99 E-value=0.019 Score=59.06 Aligned_cols=27 Identities=33% Similarity=0.819 Sum_probs=24.7
Q ss_pred eeecccCCccccchhhcCccCceeeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.++.+.|.+|+.|+++||++||....
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc
Confidence 568899999999999999999999875
No 265
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.99 E-value=0.019 Score=57.96 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=23.4
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
...++++.|-|||.|.-+||.+||...
T Consensus 93 ~~~~~~~lC~GCgaC~~~CP~~AI~~~ 119 (284)
T COG1149 93 KPVLNPDLCEGCGACSIVCPEPAIEEE 119 (284)
T ss_pred ceecCcccccCcccceeeCCCcccccc
Confidence 346789999999999999999998653
No 266
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=93.89 E-value=0.027 Score=56.55 Aligned_cols=26 Identities=46% Similarity=1.034 Sum_probs=23.1
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++...|++|+.|+.+||.+|+...
T Consensus 172 ~~i~~~~C~~Cg~C~~~CP~~AI~~~ 197 (234)
T TIGR02700 172 AFIRLLKCVGCGKCKEACPYNAIHGG 197 (234)
T ss_pred eEEchhhCCccchHHhhCCCCceecC
Confidence 36788899999999999999999865
No 267
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=93.87 E-value=0.034 Score=57.95 Aligned_cols=55 Identities=25% Similarity=0.601 Sum_probs=46.1
Q ss_pred eecccccccc--chhhhcccccceec-ccccceeecccCCccccchhhcCccCceeee
Q psy9414 448 IIKENKCIGC--TLCIQSCPVDAIIG-AAKHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 448 ~id~~~Ci~C--g~Cv~~CP~~ai~~-~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.+-+-.|.+| -.|+.+||.|||.- +.+++..+|.++|.+-..|+..||..-+.+.
T Consensus 177 mYLPRiCeHCLNPsCvasCPsgaiYKReEDGIVLiDQd~CRGwR~CvsgCPYKKvYfN 234 (513)
T COG1140 177 MYLPRLCEHCLNPSCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKVYFN 234 (513)
T ss_pred HhhHHHHhhcCCcHHhhcCCcccccccccCceEEeecccccchhhhhcCCCcceeEee
Confidence 4445679999 58999999999864 4567788999999999999999999887765
No 268
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.66 E-value=0.027 Score=45.32 Aligned_cols=18 Identities=39% Similarity=1.243 Sum_probs=11.1
Q ss_pred ccccccccchhhhccccc
Q psy9414 450 KENKCIGCTLCIQSCPVD 467 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ 467 (582)
....|+|||+|+++||++
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 345566666666666654
No 269
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=93.55 E-value=0.082 Score=57.22 Aligned_cols=135 Identities=14% Similarity=0.069 Sum_probs=82.2
Q ss_pred CCCCcEEEEecCCCccccCCee-eeeccccccc-ccccccCCCcEEec--Cccccc----ChHHHHHHHHH-cCCCCCCC
Q psy9414 25 NMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAH-PISDAIENITHSIC--TLEFQD----HRPFYEWILNK-IDKTNFIK 95 (582)
Q Consensus 25 ~~~D~v~~R~~~~~H~~~g~k~-~~~P~Y~fa~-~vdD~~~githvir--~~e~~~----~~~~~~~l~~~-l~~~~~~~ 95 (582)
+-+|+++.+....-+|.=-+.| .+.|-.|.-| +......|-+--|+ |.|++- |.-.|. ++ .|- .
T Consensus 198 ~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~---~A~~g~----~ 270 (411)
T TIGR03447 198 DPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHA---EAATGV----R 270 (411)
T ss_pred CCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHH---HHhcCC----C
Confidence 3369999997654355444555 4788776533 33333344444444 444333 333333 22 222 0
Q ss_pred CCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 96 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 96 ~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
+..-.++|-++|.++|.||||+..+ ..|++.+.+.|+.|+++|-|+. .+--+++..|+.+.|+.
T Consensus 271 ~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~ 334 (411)
T TIGR03447 271 RMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLL-AGHYRQDRDWTDAVLAE 334 (411)
T ss_pred CcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEe-cCCCCCCCccCHHHHHH
Confidence 1122455667999999999999853 4578889889999999998886 33334566777777766
Q ss_pred HHHHhhhc
Q psy9414 176 ALRDDLDI 183 (582)
Q Consensus 176 ~~~~~l~~ 183 (582)
. ++.|++
T Consensus 335 a-~~~l~r 341 (411)
T TIGR03447 335 A-EARLAR 341 (411)
T ss_pred H-HHHHHH
Confidence 3 455554
No 270
>PLN00071 photosystem I subunit VII; Provisional
Probab=93.55 E-value=0.036 Score=45.83 Aligned_cols=26 Identities=31% Similarity=0.930 Sum_probs=22.6
Q ss_pred eecccCCccccchhhcCccCceeeee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.++.++|++|+.|+.+||+++|.+..
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~~~ 30 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceeeec
Confidence 45678999999999999999998754
No 271
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=93.53 E-value=0.04 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=24.1
Q ss_pred ccceeecccCCccccchhhcCccCceee
Q psy9414 474 KHMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 474 ~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
.+...++.++|++||.|+.+||.+||.+
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~ 67 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARL 67 (295)
T ss_pred CceEEEccccCCCCchhhhhCccccccc
Confidence 4455788999999999999999999873
No 272
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=93.51 E-value=0.17 Score=55.82 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCCCCCcEEEEecC---CCccccCCeee-eecccccc----------cccccccCCCcEEecCcccccChHHHHHHHHHc
Q psy9414 23 NINMRDPIIYRIRH---VNHYRTNNNWC-IYPMYDYA----------HPISDAIENITHSICTLEFQDHRPFYEWILNKI 88 (582)
Q Consensus 23 n~~~~D~v~~R~~~---~~H~~~g~k~~-~~P~Y~fa----------~~vdD~~~githvir~~e~~~~~~~~~~l~~~l 88 (582)
-.+-+|+++.+... .-++-=-..|= ++|..|.- ..+|=|.-|+.|++ =|..|-.-|..-+ .
T Consensus 185 K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliF---PHHene~Aqs~a~--~ 259 (481)
T PRK14534 185 KRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIG---VHHINEIAIAECY--L 259 (481)
T ss_pred CCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCC---CcchhHHHHHhhh--c
Confidence 34447999998642 11222222232 68876443 44677777777775 4666777776322 2
Q ss_pred CCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCc
Q psy9414 89 DKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSW 167 (582)
Q Consensus 89 ~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~ 167 (582)
|. ..+ +++|.+.|.++|.|||||.. ...|+..|...|+.|++++=|+. .+--+++..
T Consensus 260 g~------~~~~~W~H~g~l~~~g~KMSKSlG---------------N~i~l~dll~~~~~~~alR~~ll-s~~yr~~l~ 317 (481)
T PRK14534 260 NK------KWCDMFVHGEFLIMEYEKMSKSNN---------------NFITIKDLEDQGFSPLDFRYFCL-TAHYRTQLK 317 (481)
T ss_pred CC------CcceEEEEecEEEecCceecccCC---------------CcccHHHHHhcCCChhHHHHHHH-hCCCCCCCC
Confidence 54 333 45566699999999999985 35689999999999999976644 444456789
Q ss_pred ccHHHHHHHH
Q psy9414 168 INIEILEQAL 177 (582)
Q Consensus 168 ~~~~~l~~~~ 177 (582)
|+++.|++.-
T Consensus 318 Fs~e~l~~a~ 327 (481)
T PRK14534 318 FTFNNLKACK 327 (481)
T ss_pred CCHHHHHHHH
Confidence 9999888764
No 273
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.49 E-value=0.031 Score=68.26 Aligned_cols=27 Identities=30% Similarity=0.730 Sum_probs=22.6
Q ss_pred cceeccccccccchhhhccccc--ceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVD--AIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~--ai~~~ 472 (582)
.+.++.+.|++||.|+.+||.+ ||.+.
T Consensus 733 ~i~i~~~~C~gCg~Cv~~CP~~~~Al~m~ 761 (1165)
T TIGR02176 733 RIQISPLDCTGCGNCVDICPAKEKALVMQ 761 (1165)
T ss_pred eEEeccccCcCccchhhhcCCCCcccccc
Confidence 3567899999999999999995 77653
No 274
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=93.49 E-value=0.27 Score=54.38 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=81.3
Q ss_pred CCcEEEEecCCCccccCCeee-eeccccccc----------ccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCC
Q psy9414 27 RDPIIYRIRHVNHYRTNNNWC-IYPMYDYAH----------PISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIK 95 (582)
Q Consensus 27 ~D~v~~R~~~~~H~~~g~k~~-~~P~Y~fa~----------~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~ 95 (582)
+|+++.+....-++---+.|= +.|-.|.-| .+|=|.-|+.|+. -|+.|-..|... ..|.
T Consensus 178 ~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~f---pHhene~aqs~a--~~g~----- 247 (465)
T TIGR00435 178 LDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIF---PHHENEIAQSEA--AFGK----- 247 (465)
T ss_pred CCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeecccccccc---chHHHHHHHHHH--hcCC-----
Confidence 699999876433333223332 355544433 3554555555553 234444444322 1343
Q ss_pred CCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 96 RPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 96 ~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
+..-.++|++.|.++|.|||||+.+ ..|+..+.+. |.|++++-|+.... -.++..|+++.|+.
T Consensus 248 ~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~-~~~~l~fs~~~l~~ 310 (465)
T TIGR00435 248 QLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVH-YRSPLDFSEELLEA 310 (465)
T ss_pred CCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCC-CCCCCccCHHHHHH
Confidence 1222457888999999999999853 3478887776 99999999888655 45677899998877
Q ss_pred HHHHhhhcc
Q psy9414 176 ALRDDLDIK 184 (582)
Q Consensus 176 ~~~~~l~~~ 184 (582)
..+. +++.
T Consensus 311 a~~~-~~rl 318 (465)
T TIGR00435 311 AKNA-LERL 318 (465)
T ss_pred HHHH-HHHH
Confidence 7643 5544
No 275
>CHL00065 psaC photosystem I subunit VII
Probab=93.37 E-value=0.033 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.798 Sum_probs=21.5
Q ss_pred eeccccccccchhhhcccccceecc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.++.+.|++|+.|+.+||.+||.+.
T Consensus 42 ~~~~~~C~~C~~C~~~CP~~Ai~~~ 66 (81)
T CHL00065 42 APRTEDCVGCKRCESACPTDFLSVR 66 (81)
T ss_pred cCCCCcCCChhhhhhhcCccccEEE
Confidence 3456889999999999999999764
No 276
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=93.37 E-value=0.03 Score=55.22 Aligned_cols=47 Identities=30% Similarity=0.749 Sum_probs=40.0
Q ss_pred eeccc-cccccchhhhcccccceecccccceeecccCCccccchhhcCccC
Q psy9414 448 IIKEN-KCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 448 ~id~~-~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.++.. .|.||+.|...||..+|.... ......+|+.||.|.-.||..
T Consensus 185 ll~qg~~C~G~~TC~A~CP~~ai~c~G---c~g~~~~~~~~Ga~~v~~~rs 232 (247)
T COG1941 185 LLEQGLPCMGCGTCAASCPSRAIPCRG---CRGNIPRCIKCGACFVSCPRS 232 (247)
T ss_pred eecCCCcccCchhhhccCCccCCcccC---CcCCcccchhhhHHHHHHhHH
Confidence 45555 899999999999999998763 567788999999999999865
No 277
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=93.31 E-value=0.032 Score=44.88 Aligned_cols=17 Identities=41% Similarity=1.237 Sum_probs=13.4
Q ss_pred CCccccchhhcCccCcee
Q psy9414 483 LCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 483 ~C~~Cg~Cv~~CP~~AI~ 500 (582)
.|++||.|+.+||++ |.
T Consensus 51 ~CVgCgrCv~~CP~~-Id 67 (69)
T PF13746_consen 51 DCVGCGRCVRVCPAG-ID 67 (69)
T ss_pred cCCCcChHhhhcCCC-CC
Confidence 046899999999998 44
No 278
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.30 E-value=0.1 Score=56.50 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=65.7
Q ss_pred ccccCCCcEEecCccccc-ChHHHHHHHHHcCCCCCCCCCCCceeE-eecccCCCccccccchhhhccccccCCCCCCCc
Q psy9414 59 SDAIENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQYE-FSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRM 136 (582)
Q Consensus 59 dD~~~githvir~~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~~~-~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~ 136 (582)
+|.-..+.|+| |.|-.- ++-.+-.++-++|+ ..|..+. .+.+.++|.||||+....
T Consensus 278 ~~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~------~lP~~i~~~~~~~~~g~K~SkS~gn~--------------- 335 (391)
T PF09334_consen 278 NDSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGL------PLPRRIVVHGFLTLDGEKMSKSRGNV--------------- 335 (391)
T ss_dssp ST--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---------SEEEEE--EEETTCCEETTTTES---------------
T ss_pred ccCCceEEEEE-ccchhHHHHHHhHHHHhcccC------CCCCEEEeeeeEEECCeeccccCCcc---------------
Confidence 34555667776 666533 33444456677888 6665443 458889999999998432
Q ss_pred ccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhh
Q psy9414 137 PTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLD 182 (582)
Q Consensus 137 ~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~ 182 (582)
.....+.++ |.++++|=||.+.|.-..++.|+++.|...+...|-
T Consensus 336 i~~~~~~~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~ 380 (391)
T PF09334_consen 336 IWPDDLLEE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNELA 380 (391)
T ss_dssp SBHHHHHHH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCC
T ss_pred cCHHHHHHh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 245566666 899999999999999999999999998877666553
No 279
>PRK13795 hypothetical protein; Provisional
Probab=93.22 E-value=0.026 Score=64.73 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=22.6
Q ss_pred cceeccccccccchhhhcccccceec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.+.++.++|++|+.|+.+||.+++..
T Consensus 606 ~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 606 KISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred eEEechhhcCChhHHHhhcCCCeeEe
Confidence 35678899999999999999998864
No 280
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=93.22 E-value=0.026 Score=60.60 Aligned_cols=26 Identities=42% Similarity=0.974 Sum_probs=22.6
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.+.|++||.|+.+||++|+...
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred cccCcccCcCccCHHHhCCCChhhhh
Confidence 35788999999999999999998654
No 281
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.20 E-value=0.13 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.2
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
...+.+.|+.|+.|+.+||.+|+....
T Consensus 194 ~v~~~~~C~~C~~C~~~Cp~~AI~~~~ 220 (259)
T cd07030 194 VVEDLEDCSLCKLCERACDAGAIRVGW 220 (259)
T ss_pred EEeChhhCcCchHHHHhCCCCcEEEEe
Confidence 456788999999999999999998754
No 282
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=93.15 E-value=0.26 Score=55.05 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred HHHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcc
Q psy9414 83 WILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 161 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~ 161 (582)
.+..+++. ..| .+++++.+.++|.|||||+.+ ..++..+.+. |.+.++|-|+...+.
T Consensus 274 a~~~a~~~------~~p~~~~~~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~g~DalR~~ll~~~~ 331 (511)
T PRK11893 274 AFLMAAGL------PLPKRVFAHGFLTLDGEKMSKSLGN---------------VIDPFDLVDE-YGVDAVRYFLLREIP 331 (511)
T ss_pred HHHHhCCC------CCCCEEEeeccEEECCeeecccCCc---------------EEcHHHHHHH-cCcHHHHHHHHhcCC
Confidence 44455565 445 566777888999999999853 3356665555 889999999999987
Q ss_pred cCCCCcccHHHHHHHHH
Q psy9414 162 SKSDSWINIEILEQALR 178 (582)
Q Consensus 162 s~~~~~~~~~~l~~~~~ 178 (582)
..++..|+++.+....+
T Consensus 332 ~~~d~~Fs~~~~~~~~~ 348 (511)
T PRK11893 332 FGQDGDFSREAFINRIN 348 (511)
T ss_pred CCcCCCCCHHHHHHHHH
Confidence 77888999998855433
No 283
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.08 E-value=0.05 Score=64.95 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.2
Q ss_pred cceeccccccccchhhhcccccceec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.+.+ .+.|++||.|+.+||+++-.+
T Consensus 921 ~~~~-~~~C~~CG~C~~~CP~~~~py 945 (1019)
T PRK09853 921 IVHL-DAMCNECGNCAQFCPWNGKPY 945 (1019)
T ss_pred eEEc-CccCccccchhhhCCCCCCcc
Confidence 3444 499999999999999987654
No 284
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=92.96 E-value=0.024 Score=53.61 Aligned_cols=27 Identities=33% Similarity=0.860 Sum_probs=23.2
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..+.++.|+||+.|+..||+++|.+..
T Consensus 140 htv~~dlCTGC~lCva~CPtdci~m~~ 166 (198)
T COG2878 140 HTVIADLCTGCDLCVAPCPTDCIEMQP 166 (198)
T ss_pred HHHHHHHhcCCCcccCCCCCCceeeee
Confidence 356688999999999999999998753
No 285
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=92.79 E-value=0.18 Score=51.54 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.5
Q ss_pred eeccccccccchhhhcccccceeccc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..+..+|+.|+.|+.+||.+||.+..
T Consensus 195 v~~~~~C~~C~~Ci~~CP~~AI~i~~ 220 (263)
T PRK00783 195 VTDLLNCSLCKLCERACPGKAIRVSD 220 (263)
T ss_pred EeChhhCCCchHHHHhCCCCceEEEE
Confidence 44778999999999999999998754
No 286
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=92.78 E-value=0.33 Score=53.77 Aligned_cols=134 Identities=15% Similarity=0.070 Sum_probs=82.7
Q ss_pred CCCcEEEEecCCCccccCCeee-eeccccccc-ccccccCCCcEE--ecCcc----cccChHHHHHHHHHcCCCCCCCCC
Q psy9414 26 MRDPIIYRIRHVNHYRTNNNWC-IYPMYDYAH-PISDAIENITHS--ICTLE----FQDHRPFYEWILNKIDKTNFIKRP 97 (582)
Q Consensus 26 ~~D~v~~R~~~~~H~~~g~k~~-~~P~Y~fa~-~vdD~~~githv--ir~~e----~~~~~~~~~~l~~~l~~~~~~~~~ 97 (582)
-+|+++.+-...-|+---+.|= +.|..|.-| +......|.+-- .=|.| |+.|.-.|.-. .+|. +.
T Consensus 178 ~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a--~~g~-----p~ 250 (463)
T PRK00260 178 PLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEA--ATGK-----PF 250 (463)
T ss_pred ccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHH--hcCC-----Cc
Confidence 3699999976544554334442 467666655 444444444333 23445 55554444321 1332 11
Q ss_pred CCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHH
Q psy9414 98 FPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 177 (582)
Q Consensus 98 ~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~ 177 (582)
.=+++|.+.|.++|.|||||+.+ ..|+..+.+. |.|++|+-|+.. +--.++..|+++.|....
T Consensus 251 ~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~ 313 (463)
T PRK00260 251 ANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEEALEQAK 313 (463)
T ss_pred ceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHHHHHHHH
Confidence 22567778999999999999853 3477777765 999999988886 444567788888776665
Q ss_pred HHhhhcc
Q psy9414 178 RDDLDIK 184 (582)
Q Consensus 178 ~~~l~~~ 184 (582)
+. +++.
T Consensus 314 ~~-~~rl 319 (463)
T PRK00260 314 KA-LERL 319 (463)
T ss_pred HH-HHHH
Confidence 44 4443
No 287
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=92.73 E-value=0.057 Score=53.92 Aligned_cols=43 Identities=28% Similarity=0.752 Sum_probs=35.8
Q ss_pred cccccccc---ccc-cccCCcCCCCCchhHHHHHHcccccCCCCCCCc
Q psy9414 373 KHAQFEQN---LLP-QTQCTKCGYPGCRQYAEAIANKKANYNQCPTGG 416 (582)
Q Consensus 373 d~~QfeR~---glp-~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~ 416 (582)
....|... .+| ..+|+.||+ +|+.+++++..+....+.|+...
T Consensus 135 ~iad~I~e~~~~lp~~lnCg~CG~-~C~~~a~~i~~g~~~~~~C~~~~ 181 (229)
T PRK14494 135 ELADLVLERAFVLPYNLNCGHCGF-NCKGFAKAIVKGEAKWDDCVSLS 181 (229)
T ss_pred HHHHHHHHhccCCCCCCCCCccCc-CHHHHHHHHHcCCCCccCCccCC
Confidence 34455444 688 889999999 99999999999999999998754
No 288
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=92.72 E-value=0.39 Score=53.26 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=81.5
Q ss_pred CCCcEEEEecCC-C--ccccCCeee-eeccccc----------ccccccccCCCcEEecCcccccChHHHHHHHHHcCCC
Q psy9414 26 MRDPIIYRIRHV-N--HYRTNNNWC-IYPMYDY----------AHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT 91 (582)
Q Consensus 26 ~~D~v~~R~~~~-~--H~~~g~k~~-~~P~Y~f----------a~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~ 91 (582)
-+|+++.+.... + .+.=-..|= +.|-.|. ...+|=|.-|+.+++ =|+.|-.-|..-+ .|.
T Consensus 188 p~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF---PHHeneiAqs~a~--~g~- 261 (490)
T PRK14536 188 PHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR---VHHTNEIAQCEAA--TGK- 261 (490)
T ss_pred chhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC---cchhhHHHHHHHh--cCC-
Confidence 369999876421 1 221122232 4555443 333555666666664 3666766665322 243
Q ss_pred CCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccH
Q psy9414 92 NFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINI 170 (582)
Q Consensus 92 ~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~ 170 (582)
..+ +++|-+.|.++|.|||||.. ...|++.|...||.|++++-|+.. .--+++..|++
T Consensus 262 -----~~~~~w~h~g~l~~~g~KMSKSlG---------------N~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~ 320 (490)
T PRK14536 262 -----PWVRYWLHHEFLLMNKGKMSKSAG---------------QFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSW 320 (490)
T ss_pred -----CcceEEEEcCEEeecCccccccCC---------------CcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCH
Confidence 223 45566699999999999985 355899999999999999887776 44456778999
Q ss_pred HHHHHHHH
Q psy9414 171 EILEQALR 178 (582)
Q Consensus 171 ~~l~~~~~ 178 (582)
+.|....+
T Consensus 321 e~l~~a~~ 328 (490)
T PRK14536 321 EALKTAKA 328 (490)
T ss_pred HHHHHHHH
Confidence 88777644
No 289
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=92.70 E-value=0.046 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.798 Sum_probs=21.6
Q ss_pred eeccccccccchhhhcccccceecc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.++.+.|++||.|+.+||.++|.+.
T Consensus 41 ~~~~~~C~~Cg~C~~~CP~~ai~~~ 65 (80)
T TIGR03048 41 APRTEDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred cCCCCcCcChhHHHHhcCcccCEEE
Confidence 4467899999999999999998763
No 290
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.23 E-value=0.075 Score=63.68 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.4
Q ss_pred cccccchhhhcccccceeccc
Q psy9414 453 KCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
.|++||.|+.+||++|+.+.+
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 499999999999999987643
No 291
>PLN02946 cysteine-tRNA ligase
Probab=91.93 E-value=0.18 Score=56.65 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=85.5
Q ss_pred CCCCcEEEEecCCCccccCCee-eeeccccc----------ccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCC
Q psy9414 25 NMRDPIIYRIRHVNHYRTNNNW-CIYPMYDY----------AHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 93 (582)
Q Consensus 25 ~~~D~v~~R~~~~~H~~~g~k~-~~~P~Y~f----------a~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~ 93 (582)
+-+|+++++....-+|-=-..| .+.|-.|. ...+|=|-=|+.+++ =|+.|--.|..-+ .|.
T Consensus 234 np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~F---PHHENEiAQsea~--~g~--- 305 (557)
T PLN02946 234 NPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF---PHHENEIAQSCAA--CCD--- 305 (557)
T ss_pred CccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCC---CcccchHHHHHHH--hCC---
Confidence 3369999997643234434445 47776654 444777777777775 4666666665332 232
Q ss_pred CCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHH
Q psy9414 94 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEIL 173 (582)
Q Consensus 94 ~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l 173 (582)
...-+++|+|+|+++|.|||||..+ ..|+..+.+. |.|++++-|+.... -+++..|+++.|
T Consensus 306 --~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~h-yr~~l~fs~e~L 366 (557)
T PLN02946 306 --SNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTH-YRSPINYSDVQL 366 (557)
T ss_pred --CCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccC-CCCCcEecHHHH
Confidence 0112568899999999999999853 4588888775 99999998888755 446778998887
Q ss_pred HHHH
Q psy9414 174 EQAL 177 (582)
Q Consensus 174 ~~~~ 177 (582)
....
T Consensus 367 ~~a~ 370 (557)
T PLN02946 367 ESAS 370 (557)
T ss_pred HHHH
Confidence 7664
No 292
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=91.85 E-value=0.043 Score=62.09 Aligned_cols=22 Identities=41% Similarity=1.204 Sum_probs=19.1
Q ss_pred eccccccccchhhhccccccee
Q psy9414 449 IKENKCIGCTLCIQSCPVDAII 470 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~ 470 (582)
++...|..||.|+.+||.+|+.
T Consensus 189 i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 189 INESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred cccccccccCccceecchhhhh
Confidence 4567899999999999999873
No 293
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=90.87 E-value=0.13 Score=58.69 Aligned_cols=22 Identities=55% Similarity=1.195 Sum_probs=18.8
Q ss_pred ceeccccccccchhhhcccccce
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai 469 (582)
..++. .|++||.|+.+||.+||
T Consensus 574 ~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 574 AVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceeCC-CCcCHHHHHhhCccccC
Confidence 45666 79999999999999875
No 294
>PLN02610 probable methionyl-tRNA synthetase
Probab=90.69 E-value=0.75 Score=54.29 Aligned_cols=98 Identities=13% Similarity=-0.026 Sum_probs=64.5
Q ss_pred cEEecCccccc-ChHHHHHHHHHcCCCCCCCCCCCc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHH
Q psy9414 66 THSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMR 143 (582)
Q Consensus 66 thvir~~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr 143 (582)
.|+| |.|-.. ++-..-.++-++|. +...|. +.-++.|+++|.||||++.+. .....+.
T Consensus 304 ~hfi-GKDi~~fH~i~wPa~L~a~g~----~~~~p~~i~~~g~l~~eG~KMSKS~GNv---------------V~p~~~i 363 (801)
T PLN02610 304 YQFM-GKDNVPFHTVMFPSTLLGTGE----NWTMMKTISVTEYLNYEGGKFSKSKGVG---------------VFGNDAK 363 (801)
T ss_pred EEEE-eeecchhHHHHHHHHHHhCCC----CcCCCCEEEeccCEecCCceecCcCCcc---------------cCHHHHH
Confidence 4665 444322 22233344555663 003454 444558999999999998532 2345667
Q ss_pred HcCCCHHHHHHHHHHhcccCCCCcccHHHHHHH-HHHhhhc
Q psy9414 144 RRGYTPESIKLFCKRIGVSKSDSWINIEILEQA-LRDDLDI 183 (582)
Q Consensus 144 ~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~-~~~~l~~ 183 (582)
+++|.++++|=|+...+.-.++..|+|+.|... |.+-++.
T Consensus 364 ~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~ 404 (801)
T PLN02610 364 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNN 404 (801)
T ss_pred hccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 778999999999999998889999999887666 4434443
No 295
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=90.56 E-value=0.16 Score=43.96 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=22.5
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
+.++...|++||.|+.+||.++|...
T Consensus 61 ~~i~~~~C~~Cg~C~~~CP~~Ai~~~ 86 (101)
T TIGR00402 61 VEFDNAECDFCGKCAEACPTNAFHPR 86 (101)
T ss_pred eEecCccCcCccChhhHCCccccCcC
Confidence 45778899999999999999998653
No 296
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=90.49 E-value=0.14 Score=60.14 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=19.8
Q ss_pred cccccccchhhhcccccceecc
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
...|+.||.|+.+||+||+...
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k 224 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSS 224 (819)
T ss_pred cccccccCcHHHhCCCCccccC
Confidence 4689999999999999999764
No 297
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=90.14 E-value=0.37 Score=54.64 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=56.7
Q ss_pred CCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccC-CCcEEe--cCcccccChHHHHH
Q psy9414 7 KDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIE-NITHSI--CTLEFQDHRPFYEW 83 (582)
Q Consensus 7 ~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~-githvi--r~~e~~~~~~~~~~ 83 (582)
++|..++++.- -+ ..|.|+.|+++++=+-|- |.|...+=+.. +.+++| =|.||..+..+=..
T Consensus 280 ~dGa~~~~~~~----~g--~~~~vl~ksDGt~~Y~t~---------DiA~~~~k~~~~~~d~~IyV~g~dq~~h~~~l~~ 344 (562)
T PRK12451 280 SEGALVVNLEE----EG--MPPCLIRKSDGATIYATR---------DLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFT 344 (562)
T ss_pred cCCeEEEEecc----cC--CCceEEEeCCCccccchh---------HHHHHHHHhhccCCCEEEEEeCCcHHHHHHHHHH
Confidence 36777765521 11 158899999997322222 44432222221 333333 26777777777778
Q ss_pred HHHHcCCCCCCCCCCCceeEeecccCCCccccccch
Q psy9414 84 ILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKL 119 (582)
Q Consensus 84 l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~ 119 (582)
+.++|||. ....-....|+.+++.|.+||||++
T Consensus 345 ~~~~lg~~---~~~~l~h~~~g~V~~~g~kmStR~G 377 (562)
T PRK12451 345 VLKKLGYT---WVDGMEHVPFGLILKDGKKMSTRKG 377 (562)
T ss_pred HHHHcCCC---cccCeEEEeeeeEecCCCCCcCCCC
Confidence 88999981 0112233556788888899999985
No 298
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=90.01 E-value=0.84 Score=51.39 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcc
Q psy9414 83 WILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 161 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~ 161 (582)
.++.++|+ ..| .+..+|++.++|.|||||+.+. .++..+.++ |.++++|=|++..+.
T Consensus 302 a~l~~~~~------~~~~~~~~~g~v~~~g~KmSKS~Gn~---------------i~~~d~i~~-~g~D~lR~~l~~~~~ 359 (530)
T TIGR00398 302 AMLMGLGL------PLPTQVFSHGYLTVEGGKMSKSLGNV---------------VDPSDLLAR-FGADILRYYLLKERP 359 (530)
T ss_pred HHHHhCCC------CCCCEEEeeccEEECCceecccCCce---------------ecHHHHHHH-cCchHHHHHHhhCCC
Confidence 46677777 444 5667778888999999998533 355565554 888999999999887
Q ss_pred cCCCCcccHHHHHHHH
Q psy9414 162 SKSDSWINIEILEQAL 177 (582)
Q Consensus 162 s~~~~~~~~~~l~~~~ 177 (582)
...+..|+++.|....
T Consensus 360 ~~~d~~f~~~~l~~~~ 375 (530)
T TIGR00398 360 LGKDGDFSWEDFVERV 375 (530)
T ss_pred CCCCCCCCHHHHHHHH
Confidence 7788899999887653
No 299
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=89.85 E-value=0.32 Score=50.67 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=40.8
Q ss_pred cccccccCCcCCCCCchhHHHHHHcccccCCCCCCCch----HHHHHHHHhhCC
Q psy9414 380 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGR----KGIIKLAKYLNK 429 (582)
Q Consensus 380 ~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~----~~l~~l~~~~~~ 429 (582)
.+||.++|+.||++.|..|+.-|.++.+....||.--. ..++++...+..
T Consensus 11 ~lLPktNCg~Cg~~tCMaFAtkli~re~t~~dCp~L~~~kf~k~l~kl~eLlaP 64 (467)
T COG1456 11 KLLPKTNCGECGEATCMAFATKLIDREATPDDCPPLIKEKFAKKLEKLDELLAP 64 (467)
T ss_pred hhCcccCccccCchHHHHHHHHHhccccCcccCcccccHHHHHHHHHHHHhcCc
Confidence 37999999999999999999999999999999998765 445555554443
No 300
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=89.48 E-value=1.5 Score=49.19 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=57.9
Q ss_pred cCCCcEEecCcccccCh---HHHHHHH-HHcCCCCCCCCCCCc--eeEeecccCCCccccccchhhhccccccCCCCCCC
Q psy9414 62 IENITHSICTLEFQDHR---PFYEWIL-NKIDKTNFIKRPFPK--QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPR 135 (582)
Q Consensus 62 ~~githvir~~e~~~~~---~~~~~l~-~~l~~~~~~~~~~p~--~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr 135 (582)
..|||-=-=|.||..+. .....+. +.||. .+|. .++|-+|...|.|||||+++
T Consensus 223 ~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~------~~P~~~~ye~v~L~~~g~KMSKS~Gn--------------- 281 (515)
T TIGR00467 223 IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQY------SPPVTVQYEWISLKGKGGKMSSSKGD--------------- 281 (515)
T ss_pred hhCcccccCCCCccCccCCchhHHHHHHHHhCC------CCCcCcEEEEEEEcCCCccccCCCCC---------------
Confidence 34555555577777644 3333344 69988 6675 44545666678899999963
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHH
Q psy9414 136 MPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEIL 173 (582)
Q Consensus 136 ~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l 173 (582)
..|+..+.+. +.|++++=|+.. .-..+...||++.|
T Consensus 282 ~itl~dll~~-~~pdalR~~~l~-~~~~~~ldFd~~~l 317 (515)
T TIGR00467 282 VISVKDVLEV-YTPEITRFLFAR-TKPEFHISFDLDVI 317 (515)
T ss_pred CccHHHHHHH-cCHHHHHHHHhc-cCCCCCCcCCHHHH
Confidence 3478887776 889999765333 33345667887766
No 301
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=89.02 E-value=0.43 Score=49.37 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=65.4
Q ss_pred CCCCcEEEEecCCCccccCCeee-eecccc----------cccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCC
Q psy9414 25 NMRDPIIYRIRHVNHYRTNNNWC-IYPMYD----------YAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 93 (582)
Q Consensus 25 ~~~D~v~~R~~~~~H~~~g~k~~-~~P~Y~----------fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~ 93 (582)
+-+|+++.+....-.+.=.+.|= +.|..| |...+|=|.=|+.+++ =|+.|.--|..-+..-.|
T Consensus 163 ~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~F---PHHENEiAqs~a~~g~~~--- 236 (300)
T PF01406_consen 163 NPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIF---PHHENEIAQSEAATGKPF--- 236 (300)
T ss_dssp STT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTT---THHHHHHHHHHHHHSS-S---
T ss_pred CCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCC---CCccchHHHHHHhhCchH---
Confidence 33599999986532222222232 677665 3344444555555543 255555555543332112
Q ss_pred CCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHH
Q psy9414 94 IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEIL 173 (582)
Q Consensus 94 ~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l 173 (582)
.-+++|-++|+++|.||||+..+ +.||+.+..+ |+|++||-|+..--.. ++-.|+++.|
T Consensus 237 ----a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr-~~l~~s~~~l 295 (300)
T PF01406_consen 237 ----ANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYR-KPLNFSEENL 295 (300)
T ss_dssp ----EEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TT-S-EEE-HHHH
T ss_pred ----HHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCC-CccccCHHHH
Confidence 23566778999999999999753 4589998876 9999998877665554 4567777777
Q ss_pred HH
Q psy9414 174 EQ 175 (582)
Q Consensus 174 ~~ 175 (582)
+.
T Consensus 296 ~~ 297 (300)
T PF01406_consen 296 EE 297 (300)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 302
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=88.87 E-value=0.17 Score=53.67 Aligned_cols=27 Identities=30% Similarity=0.742 Sum_probs=23.8
Q ss_pred eeecccCCccccchhhcCccCceeeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..++...|++||.|+.+||++||.+.+
T Consensus 7 ~vi~~~~C~gCg~C~~~CP~~aI~~~~ 33 (341)
T PRK09326 7 EVIEYDVCTACGACEAVCPIGAITVDK 33 (341)
T ss_pred cEECcccCcChHHHHHhCCHhhheccc
Confidence 367788999999999999999998864
No 303
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=88.46 E-value=0.78 Score=52.90 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=48.5
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 179 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~ 179 (582)
++.|.|+|++.|.|||||..+ ..|+..+.+. |.|++||=|+... --.++..|+++.|......
T Consensus 302 y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~ 364 (651)
T PTZ00399 302 YFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAIEK 364 (651)
T ss_pred EEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHHHH
Confidence 456669999999999999853 4478887776 9999999988754 4446778999887666443
No 304
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=88.01 E-value=0.52 Score=53.57 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred CCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEe--cCcccccChHHHHHH
Q psy9414 7 KDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSI--CTLEFQDHRPFYEWI 84 (582)
Q Consensus 7 ~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvi--r~~e~~~~~~~~~~l 84 (582)
++|..++++.. .. ++ ..|-|+.|+++++=+-|. |.|-...=...+.+++| =|.||..+..+-..+
T Consensus 282 ~~Ga~~~~~~~-~~-d~--~~~~vl~ksDGt~~Y~t~---------DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~ 348 (566)
T TIGR00456 282 EDGALWLDLTL-FG-DK--DKDRVLQKSDGTYLYLTR---------DIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAI 348 (566)
T ss_pred EcCCEEEEccc-cc-CC--CCCeEEEECCCCceechh---------hHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHH
Confidence 44666665421 11 11 147899999987332222 33333222222455544 477888888888899
Q ss_pred HHHcCCCCCCCCCCC-ceeEeecccCCCccccccch
Q psy9414 85 LNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKL 119 (582)
Q Consensus 85 ~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~ 119 (582)
+++||+ ..| ...|++.--..+.+||||++
T Consensus 349 l~~lG~------~~~~~l~h~~~~~V~~~kmSkr~G 378 (566)
T TIGR00456 349 LEKLGF------YKKKELIHLNFGMVPLGSMKTRRG 378 (566)
T ss_pred HHHcCC------CCCCceEEEEEEEEECCCCCccCC
Confidence 999998 555 45555543334578999985
No 305
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=87.91 E-value=1.4 Score=53.14 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=52.1
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 179 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~ 179 (582)
.+.++|++..+|.||||++++.+ ++..+.+. |.++++|-|+...|-..++..|+++.+....+.
T Consensus 607 ~i~~~G~vl~~G~KMSKSlGNvI---------------~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~ 670 (938)
T TIGR00395 607 GIVVNGYVMLEGKKMSKSKGNVL---------------TLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGTILR 670 (938)
T ss_pred EEEEeceEEeCCccccCcCCCCC---------------CHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 67788888889999999986432 44554443 899999999999988788899999888776543
Q ss_pred hhhcc
Q psy9414 180 DLDIK 184 (582)
Q Consensus 180 ~l~~~ 184 (582)
|.+.
T Consensus 671 -l~~l 674 (938)
T TIGR00395 671 -LERL 674 (938)
T ss_pred -HHHH
Confidence 4433
No 306
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.20 E-value=2 Score=47.01 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=85.6
Q ss_pred EEEEeccCCCCCCCCcEEEEecCCCccccCCeee-eec----------ccccccccccccCCCcEEecCcccccChHHHH
Q psy9414 14 RVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWC-IYP----------MYDYAHPISDAIENITHSICTLEFQDHRPFYE 82 (582)
Q Consensus 14 r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~-~~P----------~Y~fa~~vdD~~~githvir~~e~~~~~~~~~ 82 (582)
|.-.+-.-.||. |+|+.+....-.|-=-..|- +.| +.-|...+|=|-=|+.+++ =|+.|.--|.
T Consensus 169 r~~~~~~Krnp~--DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQs 243 (464)
T COG0215 169 RVEVDEEKRNPL--DFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQS 243 (464)
T ss_pred ccccccccCCch--hheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHHH
Confidence 444444456665 99999987644444333443 344 4456666666666776664 4555555444
Q ss_pred HHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc
Q psy9414 83 WILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 162 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s 162 (582)
-- +.|-. +-.=+++|.|.|+++|.||||+-. -+.||+.+... |.|++||-|+..--..
T Consensus 244 ea--~~g~~----~~a~yWmH~G~l~i~geKMSKSLG---------------Nfiti~d~l~~-~~p~~lR~~lls~HYR 301 (464)
T COG0215 244 EA--ATGVK----PFAKYWMHNGFLNIDGEKMSKSLG---------------NFITVRDLLKK-YDPEVLRLFLLSSHYR 301 (464)
T ss_pred Hh--hhCCC----cceeEeEEcceeeecCcCcccccC---------------CeeEHHHHHhh-cCHHHHHHHHHHHHhC
Confidence 32 12310 012267788899999999999974 35699998888 9999998877765543
Q ss_pred CCCCcccHHHHHHH
Q psy9414 163 KSDSWINIEILEQA 176 (582)
Q Consensus 163 ~~~~~~~~~~l~~~ 176 (582)
++-.|+.+.|+..
T Consensus 302 -~pl~fsee~L~~A 314 (464)
T COG0215 302 -SPLDFSEELLEEA 314 (464)
T ss_pred -CccccCHHHHHHH
Confidence 4556666665543
No 307
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.20 E-value=0.25 Score=45.70 Aligned_cols=35 Identities=34% Similarity=0.694 Sum_probs=32.0
Q ss_pred ccccccCCcCCCCCchhHHHHHHcccccCCCCCCC
Q psy9414 381 LLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTG 415 (582)
Q Consensus 381 glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~ 415 (582)
-||+++|+.||.-+|..||--|.++..+...|..-
T Consensus 133 yLP~tNCg~CGEqtCmaFAiKLlnge~~ld~C~pL 167 (193)
T COG4871 133 YLPQTNCGKCGEQTCMAFAIKLLNGEVKLDSCLPL 167 (193)
T ss_pred hCCCCccccchhHHHHHHHHHHHcCccchhhcccc
Confidence 58999999999999999999999999998888544
No 308
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=87.05 E-value=1.7 Score=50.44 Aligned_cols=76 Identities=13% Similarity=0.046 Sum_probs=55.6
Q ss_pred HHHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcc
Q psy9414 83 WILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 161 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~ 161 (582)
.++.++|+ ..| .++-++++.++|.|||||+.+. .+...+.++ |.++|+|=|+...+.
T Consensus 304 a~l~a~g~------~lP~~v~~hg~v~~~G~KMSKS~GNv---------------V~p~dlie~-ygaDalR~~ll~~~~ 361 (673)
T PRK00133 304 AMLEGAGY------RLPTNVFAHGFLTVEGAKMSKSRGTF---------------IWARTYLDH-LDPDYLRYYLAAKLP 361 (673)
T ss_pred HHHHhCCC------CCCCEEeeeccEEecCCcccccCCcc---------------cCHHHHHHH-cCchHHHHHHHhcCC
Confidence 35566777 555 4555668888999999998533 245565555 788999999998887
Q ss_pred cC-CCCcccHHHHHH-HHHHh
Q psy9414 162 SK-SDSWINIEILEQ-ALRDD 180 (582)
Q Consensus 162 s~-~~~~~~~~~l~~-~~~~~ 180 (582)
.. .+..|+|+.+.. .|...
T Consensus 362 ~~~~D~~Fs~~~~~~~~n~~l 382 (673)
T PRK00133 362 ETIDDLDFNWEDFQQRVNSEL 382 (673)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 77 889999998654 45444
No 309
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=86.75 E-value=0.45 Score=37.70 Aligned_cols=58 Identities=12% Similarity=0.299 Sum_probs=34.9
Q ss_pred ccceeccccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..+.+|.+.|++=|.|+..=|. ++....++....+...=..=-.=+..||+|||++.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~-VFd~~~~~~v~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPE-VFDQDDEPWVSPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCC-cccCCCCCcCCcCccCHHHHHHHHHcCCccCcEEee
Confidence 3567889999999999997773 333322211111111111113467889999998864
No 310
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=86.57 E-value=0.31 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.833 Sum_probs=20.7
Q ss_pred eccccccccchhhhcccccceecc
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+...|++||.|+.+||++||...
T Consensus 187 ~~~~~C~~Cg~Cv~vCP~gAL~~~ 210 (234)
T PRK07569 187 GTSETCTSCGKCVQACPTGAIFRK 210 (234)
T ss_pred cccccccchHHHHHhCCCCcEEec
Confidence 345789999999999999999764
No 311
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=86.34 E-value=1.9 Score=49.79 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=55.1
Q ss_pred HHHHHcCCCCCCCCCCCc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcc
Q psy9414 83 WILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV 161 (582)
Q Consensus 83 ~l~~~l~~~~~~~~~~p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~ 161 (582)
.++.++|+ ..|. +.-+|.+..+|.||||+..+. .+...+.++ |.++++|=|+...+.
T Consensus 274 a~l~~~~~------~~p~~v~~hg~l~~eg~KMSKS~GN~---------------i~p~d~l~~-ygaD~lR~~L~~~~~ 331 (648)
T PRK12267 274 IMLMALGL------PLPKKVFAHGWWLMKDGKMSKSKGNV---------------VDPEELVDR-YGLDALRYYLLREVP 331 (648)
T ss_pred HHHHhCCC------CCCcEEEecceEEECCceecccCCcc---------------cCHHHHHHH-cCCcHHHHHHHhcCC
Confidence 44556777 6665 445668889999999998533 234444433 889999999998887
Q ss_pred cCCCCcccHHHHHHH-HHHhhh
Q psy9414 162 SKSDSWINIEILEQA-LRDDLD 182 (582)
Q Consensus 162 s~~~~~~~~~~l~~~-~~~~l~ 182 (582)
-.++..|+++.+... |++.++
T Consensus 332 ~~~D~~fs~~~~~~~~n~~l~~ 353 (648)
T PRK12267 332 FGSDGDFSPEALVERINSDLAN 353 (648)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
Confidence 778899999987543 443333
No 312
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=85.80 E-value=2.5 Score=47.94 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=46.8
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
....+|++.++|.|||||+.+. .+...+.+. |.++|+|=|+...+....+..|+++.+..
T Consensus 321 ~v~~~G~v~~~G~KMSKS~GN~---------------I~p~dli~~-yGaDalR~~ll~~~~~~~d~~f~~~~~~~ 380 (556)
T PRK12268 321 EIVSSEYLTLEGGKFSKSRGWG---------------IWVDDALER-YPPDYLRYYLAANAPENSDTDFTWEEFVR 380 (556)
T ss_pred EeeccCCEEECCeeeccCCCcc---------------cCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 5666778888999999998643 245555444 77899999999998777888999988754
No 313
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=85.50 E-value=0.81 Score=45.40 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=15.7
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
...|+.||.|+.+||.+.
T Consensus 193 ~~~C~~Cg~C~~~CP~~I 210 (220)
T TIGR00384 193 VWRCTTCMNCSEVCPKGV 210 (220)
T ss_pred CccCccccccccccCCCC
Confidence 357999999999999864
No 314
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=85.49 E-value=1.5 Score=50.18 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=81.8
Q ss_pred CCcEEEEecCCCccccCCeee-eeccc----------ccccccccccCCCcEEecCcccccChHHHHHHHHHcCCC----
Q psy9414 27 RDPIIYRIRHVNHYRTNNNWC-IYPMY----------DYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKT---- 91 (582)
Q Consensus 27 ~D~v~~R~~~~~H~~~g~k~~-~~P~Y----------~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~---- 91 (582)
+|+++.+....-+|-=-..|- +.|-. .|...+|=|-=|+.|++ =|+.|---|..-+ .|..
T Consensus 405 ~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiF---PHHENEiAQseA~--~g~~~~~~ 479 (699)
T PRK14535 405 LDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF---PHHENEIAQSVGA--TGHTCGHH 479 (699)
T ss_pred cccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCC---CCCccHHHHHHHh--hCCCcccc
Confidence 699999976432332222332 45654 45555777777888775 4666666665322 2320
Q ss_pred ------CC-CCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCC
Q psy9414 92 ------NF-IKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 164 (582)
Q Consensus 92 ------~~-~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~ 164 (582)
+. ..+-.-+++|.|+|.++|.||||+..+ ..|++.+.+. |.|+++|-|+.. +--++
T Consensus 480 ~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl~lLs-shYRs 542 (699)
T PRK14535 480 HAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRFFILR-AHYRS 542 (699)
T ss_pred cccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHHHHHc-CCCCC
Confidence 00 000122678889999999999999853 4478887774 999999998887 44456
Q ss_pred CCcccHHHHHHH
Q psy9414 165 DSWINIEILEQA 176 (582)
Q Consensus 165 ~~~~~~~~l~~~ 176 (582)
+..|+.+.|+..
T Consensus 543 pL~fS~e~Le~A 554 (699)
T PRK14535 543 PLNYSDAHLDDA 554 (699)
T ss_pred CCCcCHHHHHHH
Confidence 677888877764
No 315
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=85.09 E-value=0.38 Score=48.05 Aligned_cols=26 Identities=35% Similarity=0.887 Sum_probs=23.0
Q ss_pred eecccCCccccchhhcCccCceeeee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.++...|++|+.|+.+||.+||.+..
T Consensus 170 ~id~~~C~~C~~C~~aCP~~ai~~~~ 195 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRAIEMED 195 (228)
T ss_pred EEChhhCcChhHHHHhCCHhhEEEeC
Confidence 57788999999999999999998753
No 316
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=85.08 E-value=0.65 Score=51.01 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.4
Q ss_pred eeccccccccchhhhcccccc
Q psy9414 448 IIKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~a 468 (582)
..+...|+.||.|..+||.+.
T Consensus 398 ~~~~~~C~~Cg~C~~vCP~~i 418 (435)
T TIGR01945 398 EHNLMDCIECGCCSYVCPSNI 418 (435)
T ss_pred cCCCCcCCcCCCcccccCCCC
Confidence 345678999999999999864
No 317
>PLN02286 arginine-tRNA ligase
Probab=84.88 E-value=3 Score=47.54 Aligned_cols=84 Identities=13% Similarity=-0.073 Sum_probs=48.8
Q ss_pred CCcEEEEecCCCccccCCeeeeecccccccccccccC-CCcEEe--cCcccccChHHHHHHHHHcCCCCCCCCCCCceeE
Q psy9414 27 RDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIE-NITHSI--CTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYE 103 (582)
Q Consensus 27 ~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~-githvi--r~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~ 103 (582)
+|.|+.|++++.= |.|=|.|....=+.. +.+++| =|.||..+..+=..+.++|||..-.....-....
T Consensus 297 ~~~vl~ksDGt~t---------Y~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~ 367 (576)
T PLN02286 297 IPLIVVKSDGGFN---------YASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVG 367 (576)
T ss_pred CceEEEECCCchh---------hHHHHHHHHHHHHhccCCCEEEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEe
Confidence 5789999998722 222245544443333 233332 2667777777777888999981000001223455
Q ss_pred eeccc-CCCccccccch
Q psy9414 104 FSRLN-LTHTITSKRKL 119 (582)
Q Consensus 104 ~~~l~-~~~~~lSKr~~ 119 (582)
|+.++ ..|.+||||++
T Consensus 368 ~g~V~~~~g~kmStR~G 384 (576)
T PLN02286 368 FGLVLGEDGKRFRTRSG 384 (576)
T ss_pred eccEECCCCCcccCCCC
Confidence 66665 56889999985
No 318
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=84.66 E-value=0.53 Score=49.65 Aligned_cols=19 Identities=37% Similarity=1.069 Sum_probs=16.5
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
+...|++||.|...||.+.
T Consensus 349 ~as~CieCgqCl~~CPq~l 367 (391)
T COG1453 349 KASDCIECGQCLEKCPQHL 367 (391)
T ss_pred cccccchhhhhhhcCCCcC
Confidence 5678999999999999753
No 319
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=84.44 E-value=0.65 Score=53.83 Aligned_cols=19 Identities=37% Similarity=0.961 Sum_probs=16.4
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
+.+.|++||.|+.+||.+.
T Consensus 435 ~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 435 LEEQCYACGRCEQACPKNI 453 (784)
T ss_pred CHhhhhhhhHHhccCCCCC
Confidence 3568999999999999873
No 320
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=84.30 E-value=1.2 Score=41.12 Aligned_cols=18 Identities=33% Similarity=0.815 Sum_probs=15.7
Q ss_pred ccccccchhhhcccccce
Q psy9414 452 NKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai 469 (582)
..|..||.|..+||.+..
T Consensus 46 ~~C~~Cg~C~~~CP~~i~ 63 (144)
T TIGR03290 46 WMCTTCYTCQERCPRDVK 63 (144)
T ss_pred CcCcCcCchhhhcCCCCC
Confidence 479999999999998754
No 321
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=84.14 E-value=0.47 Score=37.49 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=18.9
Q ss_pred eecccCCccccchhhcCccCceeee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.++.++|++||.|+..||.- +.+.
T Consensus 2 ~vD~~~C~gcg~C~~~aP~v-F~~d 25 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPEV-FELD 25 (65)
T ss_pred EEecccCcCccHHHhhCCcc-EEEC
Confidence 46788999999999999943 4443
No 322
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=83.77 E-value=0.41 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=20.9
Q ss_pred cCCccccchhhcCccCceeeeecC
Q psy9414 482 KLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 482 ~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
..|..|+.|+++||++||.....+
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~~p 228 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGGEP 228 (314)
T ss_pred ccCcchhHHHhhCCccccCCCCCC
Confidence 579999999999999999876543
No 323
>PLN02224 methionine-tRNA ligase
Probab=83.77 E-value=3.6 Score=47.16 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=63.1
Q ss_pred cEEecCccccc-ChHHHHHHHHHcCCCCCCCCCCCc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHH
Q psy9414 66 THSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMR 143 (582)
Q Consensus 66 thvir~~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr 143 (582)
-|++ |.|-+. ++-..-.++-++|+ ..|. +..++.|.++|.||||++.+.. +...+.
T Consensus 324 v~~i-GKDii~fH~i~wpa~l~~~g~------~~P~~i~~~g~l~~eG~KMSKS~GN~i---------------~p~e~l 381 (616)
T PLN02224 324 LHLI-GKDILRFHAVYWPAMLMSAGL------ELPKMVFGHGFLTKDGMKMGKSLGNTL---------------EPFELV 381 (616)
T ss_pred eEEE-eecccccHHHHHHHHHHHCCC------CCCcEEEecccEecCCccccccCCccC---------------CHHHHH
Confidence 3544 555443 22333334445676 5554 4445688999999999985332 345555
Q ss_pred HcCCCHHHHHHHHHHhcccCCCCcccHHHHH-HHHHHhhhcc
Q psy9414 144 RRGYTPESIKLFCKRIGVSKSDSWINIEILE-QALRDDLDIK 184 (582)
Q Consensus 144 ~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~-~~~~~~l~~~ 184 (582)
++ |.++++|=|+...+.-.++..|+++.+. ..|.+.++..
T Consensus 382 ~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~l 422 (616)
T PLN02224 382 QK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTI 422 (616)
T ss_pred HH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 54 8999999999998877788899998754 4465555543
No 324
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=83.47 E-value=0.67 Score=40.16 Aligned_cols=47 Identities=43% Similarity=0.733 Sum_probs=38.7
Q ss_pred EEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccc
Q psy9414 67 HSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRK 118 (582)
Q Consensus 67 hvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~ 118 (582)
|++||+++..+...+.|......+ ...|.++.|+.+++++..||+|+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l-----~~~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITL-----PVDPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCC-----CCCCeEEEccccccCceeeccCC
Confidence 999999999999999984444444 14688999999988899999985
No 325
>COG2000 Predicted Fe-S protein [General function prediction only]
Probab=83.03 E-value=0.82 Score=43.55 Aligned_cols=38 Identities=37% Similarity=0.819 Sum_probs=34.2
Q ss_pred cccccccccCCcCCCCCchhHHHHHHcccccCCCCCCC
Q psy9414 378 EQNLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTG 415 (582)
Q Consensus 378 eR~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~ 415 (582)
..+++|..+|+.||+..|..+++++.++.+....||.-
T Consensus 11 v~~llpg~~cg~cgy~Rcde~aeallkk~v~i~dcp~~ 48 (226)
T COG2000 11 VTHLLPGFNCGACGYSRCDEFAEALLKKLVKIDDCPFL 48 (226)
T ss_pred HHHhcCCccccccCcchhhHHHHHHHhcccccccChHH
Confidence 34589999999999999999999999998888899875
No 326
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=82.91 E-value=0.65 Score=51.36 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=21.7
Q ss_pred cHHHHHH-cCCCHHHHHHHHHHhcccCCCCcccHH
Q psy9414 138 TLIGMRR-RGYTPESIKLFCKRIGVSKSDSWINIE 171 (582)
Q Consensus 138 tl~~lr~-~G~~p~ai~~~~~~~G~s~~~~~~~~~ 171 (582)
|+..|++ .-|--+.|-..+..+-.++..+..|++
T Consensus 154 tlgdle~~l~y~Eeqlt~~ls~~h~gqE~~~~dye 188 (772)
T COG1152 154 TLGDLEAALEYAEEQLTQLLSAVHTGQEGSLLDYE 188 (772)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 5666654 345556777777777676666666664
No 327
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=81.79 E-value=0.91 Score=52.57 Aligned_cols=18 Identities=39% Similarity=1.113 Sum_probs=16.6
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
.+.|++||.|+.+||.++
T Consensus 402 ~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 402 FDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhhhhhHHhhhCCCCC
Confidence 578999999999999987
No 328
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=81.70 E-value=0.51 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.887 Sum_probs=18.8
Q ss_pred ccCCccccchhhcCccCceee
Q psy9414 481 SKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 481 ~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
...|..|+.|+.+||++||..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCCCccHHHHHHhcCcccccC
Confidence 468999999999999999973
No 329
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=81.50 E-value=0.59 Score=36.18 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=14.5
Q ss_pred ecccCCccccchhhcCccCceeeee
Q psy9414 479 IFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 479 i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+|.+.|++||.|+..||.- +.+.+
T Consensus 1 VD~~~Ci~Cg~C~~~aP~v-F~~~d 24 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDV-FDYDD 24 (58)
T ss_dssp E-TTT--S-SHHHHH-TTT-EEEET
T ss_pred CChhhCcCCChHHHhCcHh-eeEcC
Confidence 4568999999999999964 55554
No 330
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=80.79 E-value=1 Score=52.33 Aligned_cols=19 Identities=47% Similarity=1.055 Sum_probs=16.6
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
..+.|++||.|..+||.+.
T Consensus 440 l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 440 LYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhhccchhHHhhhCCCCC
Confidence 3578999999999999875
No 331
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=80.53 E-value=0.59 Score=35.48 Aligned_cols=16 Identities=38% Similarity=1.010 Sum_probs=8.5
Q ss_pred ccccccchhhhccccc
Q psy9414 452 NKCIGCTLCIQSCPVD 467 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ 467 (582)
..|+.||.|..+||.+
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 7899999999999986
No 332
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.39 E-value=1.7 Score=45.59 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=39.6
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINI 170 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~ 170 (582)
....++.|+++|.|||||+.. ..++..+.+. +.+.|+|=|+...+. .+..|+|
T Consensus 262 ~~~~~g~v~~~g~KmSkS~Gn---------------~v~~~dll~~-~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 262 GLIVQGMVLLEGEKMSKSKGN---------------VVTPDEAIKK-YGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HheecceEecCccccCCcCCC---------------CCCHHHHHHH-hCcHHHHHHHHhcCC--cCCCCCC
Confidence 455788899999999999853 3356666655 778999998888766 5666654
No 333
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=80.22 E-value=0.84 Score=52.28 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.2
Q ss_pred cccccchhhhcccccceecc
Q psy9414 453 KCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.|..||.|+.+||+||+...
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSK 202 (603)
T ss_pred CCcccCChHhhCCccccccc
Confidence 46789999999999999753
No 334
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=80.16 E-value=2.9 Score=43.64 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=36.4
Q ss_pred ceeEeecccCCC-ccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCC
Q psy9414 100 KQYEFSRLNLTH-TITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSD 165 (582)
Q Consensus 100 ~~~~~~~l~~~~-~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~ 165 (582)
.++-++.++.+| .|||||+.+ ..++..+.+. |.++|++-|+...+--.++
T Consensus 259 ~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~~~-~~~da~R~~l~~~~~~~~d 309 (312)
T cd00668 259 NLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVVEK-YGADALRYYLTSLAPYGDD 309 (312)
T ss_pred eeEECcEEEcCCCccccccCCC---------------cCCHHHHHHH-cCcHHHHHHHHhcCCccCC
Confidence 444557788887 999999853 3366776666 8899999999887644344
No 335
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=79.90 E-value=0.81 Score=36.70 Aligned_cols=20 Identities=25% Similarity=0.668 Sum_probs=17.5
Q ss_pred eecccCCccccchhhcCccC
Q psy9414 478 TIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.++.+.|++||.|..+||.-
T Consensus 4 ~vDrd~Cigcg~C~~~aPdv 23 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPDV 23 (68)
T ss_pred EechhhccccchhhhcCCcc
Confidence 56778999999999999963
No 336
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.16 E-value=1.5 Score=45.31 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=15.3
Q ss_pred ccccccchhhhcccccc
Q psy9414 452 NKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~a 468 (582)
..|+.|+.|+.+||.+.
T Consensus 206 ~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 206 WRCTYCYSCSNVCPRDI 222 (279)
T ss_pred CcccCcccchhhCCCCC
Confidence 58999999999999764
No 337
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=79.09 E-value=1.4 Score=47.63 Aligned_cols=18 Identities=28% Similarity=0.780 Sum_probs=16.2
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
.+.|++|+.|..+||.+.
T Consensus 53 ~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 53 LKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCcCcCcCccCcccCCCC
Confidence 478999999999999875
No 338
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=78.93 E-value=1.7 Score=43.58 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=15.7
Q ss_pred ccccccchhhhcccccce
Q psy9414 452 NKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai 469 (582)
..|..|+.|..+||.+.-
T Consensus 201 ~~C~~C~~C~~vCPkgI~ 218 (235)
T PRK12575 201 FRCRTIMNCVDVCPKGLN 218 (235)
T ss_pred ccccCcchhccccCCCCc
Confidence 489999999999998653
No 339
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=78.51 E-value=1.4 Score=42.61 Aligned_cols=20 Identities=30% Similarity=0.777 Sum_probs=16.7
Q ss_pred cccccccchhhhccccccee
Q psy9414 451 ENKCIGCTLCIQSCPVDAII 470 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~ 470 (582)
.-.|+.|..|..-||.+.-.
T Consensus 82 lW~C~tCytC~eRCPr~v~i 101 (195)
T COG1150 82 LWACVTCYTCTERCPRGVKI 101 (195)
T ss_pred ceeeeechhhhhhCCCCCCH
Confidence 34899999999999987643
No 340
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=78.39 E-value=1.9 Score=47.24 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=15.9
Q ss_pred ccccccchhhhcccccce
Q psy9414 452 NKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai 469 (582)
..|..||.|..+||.+..
T Consensus 343 ~~C~~Cg~C~~vCP~gI~ 360 (432)
T TIGR00273 343 YLSSLCGACREVCPVKIP 360 (432)
T ss_pred ccchhhhhhhccCCCCCc
Confidence 689999999999999653
No 341
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.36 E-value=5.4 Score=45.11 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCcEEecCccccc-ChHHHHHHHHHcCCCCCCCCCCCceeE-eecccCCCccccccchhhhccccccCCCCCCCcccHHH
Q psy9414 64 NITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFPKQYE-FSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIG 141 (582)
Q Consensus 64 githvir~~e~~~-~~~~~~~l~~~l~~~~~~~~~~p~~~~-~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~ 141 (582)
.+-|.| |+|-.. ++-..=.++-+.|. +.|..+. ++.|.++|.||||+.... .....
T Consensus 289 e~vhfI-GKDii~FHav~wPamL~~~~~------~lP~~i~ahg~l~~~G~KmSKSrG~~---------------V~~~~ 346 (558)
T COG0143 289 ELVHFI-GKDIIRFHAVYWPAMLMAAGL------PLPTRIFAHGFLTLEGQKMSKSRGNV---------------VDPDE 346 (558)
T ss_pred eEEEEe-ccccCcchhhHHHHHHHhCCC------CCCCEEEeeeeEEECCccccccCCcE---------------EeHHH
Confidence 345665 555332 33333345556666 5665544 458999999999998432 23445
Q ss_pred HHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhh
Q psy9414 142 MRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLD 182 (582)
Q Consensus 142 lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~ 182 (582)
+-++ |.++++|=|+....--.++..|+|+.|......+|.
T Consensus 347 ~~~~-~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~ 386 (558)
T COG0143 347 LLEQ-YGVDALRYYLARELPEGSDGDFSWEDFVERVNADLA 386 (558)
T ss_pred HHHH-cCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 5555 999999999999988889999999988776555554
No 342
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=78.11 E-value=0.81 Score=48.19 Aligned_cols=26 Identities=19% Similarity=0.625 Sum_probs=22.2
Q ss_pred cCCccccchhhcCccCceeeeecCcc
Q psy9414 482 KLCTGCDLCIKKCPVNCISMIEVTPC 507 (582)
Q Consensus 482 ~~C~~Cg~Cv~~CP~~AI~~~~~~~~ 507 (582)
+.|-.|..|+.+||++||.-......
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~ 210 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDA 210 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccch
Confidence 78999999999999999987765543
No 343
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=77.42 E-value=6.6 Score=47.22 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=47.2
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
....+|++..+|.||||++++.. +...+-++ |.+.++|-|+...|-...+..|+.+.+....+
T Consensus 564 ~v~~hG~vl~~G~KMSKS~GNvV---------------dp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~ 626 (897)
T PRK12300 564 GIVVNGFVLLEGKKMSKSKGNVI---------------PLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESVRR 626 (897)
T ss_pred EEEEcceEEECCccccCcCCCCC---------------CHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHHHH
Confidence 66777887779999999986442 33333332 77999999999988888888999888766543
No 344
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=76.91 E-value=2.5 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.966 Sum_probs=15.8
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
-+.|+.|+.|..+||.+.
T Consensus 72 ~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 72 LDRCLTCRNCETTCPSGV 89 (407)
T ss_pred cccCccccchhhhCCCCC
Confidence 368999999999999864
No 345
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=76.72 E-value=1.9 Score=45.53 Aligned_cols=17 Identities=29% Similarity=0.905 Sum_probs=15.4
Q ss_pred ccccccchhhhcccccc
Q psy9414 452 NKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~a 468 (582)
..|+.|+.|..+||.+.
T Consensus 209 w~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 209 WGCTRCYYCNSVCPMEV 225 (329)
T ss_pred ccCcChhhhhhhCCCCC
Confidence 47999999999999875
No 346
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=76.53 E-value=5.3 Score=41.91 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=52.6
Q ss_pred CcEEecCcccccCh-HHHHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHH
Q psy9414 65 ITHSICTLEFQDHR-PFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMR 143 (582)
Q Consensus 65 ithvir~~e~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr 143 (582)
+.|++ |.|.+..- -..-.++.++|+ +.+.....++.+.++|.||||++.+ ..++..+.
T Consensus 237 ~v~~~-G~D~~~fh~~~~pa~l~~~~~-----~~~~~~~~~~~~~~~g~kmSkS~gn---------------~i~~~~~l 295 (319)
T cd00814 237 LVHFI-GKDIIRFHAIYWPAMLLGAGL-----PLPTRIVAHGYLTVEGKKMSKSRGN---------------VVDPDDLL 295 (319)
T ss_pred eEEEE-eechhhhhHHHHHHHHHhCCC-----CCCcEeeeeeeEEECCeeecccCCc---------------ccCHHHHH
Confidence 44544 66655421 122235666776 1234666777888999999999853 23556665
Q ss_pred HcCCCHHHHHHHHHHhcccCCCCc
Q psy9414 144 RRGYTPESIKLFCKRIGVSKSDSW 167 (582)
Q Consensus 144 ~~G~~p~ai~~~~~~~G~s~~~~~ 167 (582)
+. |.|+++|=|+...+.-..++.
T Consensus 296 ~~-~~~d~~R~~l~~~~~~~~d~~ 318 (319)
T cd00814 296 ER-YGADALRYYLLRERPEGKDSD 318 (319)
T ss_pred HH-cCchHHHHHHHhcCCCCCCCC
Confidence 55 799999999998887665554
No 347
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=76.43 E-value=1 Score=34.80 Aligned_cols=20 Identities=40% Similarity=0.953 Sum_probs=11.0
Q ss_pred eccccccccchhhhcccccc
Q psy9414 449 IKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~a 468 (582)
.....|++||.|..+||.+.
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~l 60 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQGL 60 (61)
T ss_dssp TTTTT--S--HHHHH-TT--
T ss_pred cccccCcCcCcCcccccCCC
Confidence 35678999999999999863
No 348
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=76.32 E-value=2.2 Score=42.65 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=15.2
Q ss_pred ccccccchhhhcccccc
Q psy9414 452 NKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~a 468 (582)
..|+.||.|..+||.+.
T Consensus 198 ~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 198 FRCHTIMNCVEVCPKGL 214 (232)
T ss_pred ccCcCcCCcCccccCCC
Confidence 58999999999999864
No 349
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=76.02 E-value=1.7 Score=47.19 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=21.9
Q ss_pred cceeccccccccchhhhcccccceec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.+.+|.++|+.|+.|+.+||. |+..
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~-a~~~ 290 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK-ALHP 290 (402)
T ss_pred eEEEcchhcCcCccccccCcc-cccC
Confidence 578999999999999999998 6554
No 350
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=74.34 E-value=2.1 Score=44.28 Aligned_cols=48 Identities=8% Similarity=-0.090 Sum_probs=35.8
Q ss_pred ccchhhhcccccceeccc----ccceeecccCCccccchhhcC-ccCceeeee
Q psy9414 456 GCTLCIQSCPVDAIIGAA----KHMHTIFSKLCTGCDLCIKKC-PVNCISMIE 503 (582)
Q Consensus 456 ~Cg~Cv~~CP~~ai~~~~----~~~~~i~~~~C~~Cg~Cv~~C-P~~AI~~~~ 503 (582)
.|..|+..||.+++.++. ....+.+...|+.|..|+..| -.++|.+..
T Consensus 201 ~~~~~~~~cP~~Vf~i~~~~~~~~~~V~~~~~ct~crec~~~~~~~~~V~v~~ 253 (291)
T cd07032 201 DAEKLQKCFPPGVIDIEEVKGKKKAVVANPRKDTLSREVLRHEEFKDKVELGR 253 (291)
T ss_pred HHHHHHhhCCCccEEecccCCCceEEEcccccCcccHhHhhhhccCCceeEEE
Confidence 467899999999998752 234456788999999999876 245676653
No 351
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=73.88 E-value=1.4 Score=46.46 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=16.9
Q ss_pred eccccccccchhhhcccccc
Q psy9414 449 IKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~a 468 (582)
+....|+|||+|+.+||.+.
T Consensus 298 fG~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 298 NGYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred cCccccCCcCchhhhCCCCC
Confidence 34678999999999999863
No 352
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=72.90 E-value=1.9 Score=46.13 Aligned_cols=16 Identities=31% Similarity=0.987 Sum_probs=14.8
Q ss_pred cccccccchhhhcccc
Q psy9414 451 ENKCIGCTLCIQSCPV 466 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~ 466 (582)
.+.|.+||.|...||+
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 5689999999999998
No 353
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=72.35 E-value=7.6 Score=46.13 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=49.4
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.++.+|.+ ..+|.||||++++. .++..+.+. |.++++|-|+. .+-..++..|+++.+.. ++
T Consensus 519 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~~-~~ 580 (800)
T PRK13208 519 NIMISGMVLDPDGKKMSKSKGNV---------------VTPEELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVKI-GR 580 (800)
T ss_pred eEEEeeEEECCCCCCCCCCCCCC---------------CCHHHHHHH-cCccHHHHHHh-cCCCCCCceecHHHHHH-HH
Confidence 55667765 46899999998543 245555544 78999999998 77777888999998865 67
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
+.+++.
T Consensus 581 ~~l~kl 586 (800)
T PRK13208 581 RLLTKL 586 (800)
T ss_pred HHHHHH
Confidence 666655
No 354
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=72.34 E-value=1.7 Score=53.12 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.1
Q ss_pred cceeccccccccchhhh-cccc
Q psy9414 446 CAIIKENKCIGCTLCIQ-SCPV 466 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~-~CP~ 466 (582)
...||+..|++|+.|++ .||.
T Consensus 656 K~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 656 KRRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred cEEECHHHCCCccccccCCCCC
Confidence 46899999999999999 9994
No 355
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=70.84 E-value=1.8 Score=43.76 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=15.1
Q ss_pred ccccccchhhhcccccc
Q psy9414 452 NKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~a 468 (582)
..|+.||.|..+||.+.
T Consensus 203 ~~C~~C~~C~~vCP~~I 219 (244)
T PRK12385 203 WSCTFVGYCSEVCPKHV 219 (244)
T ss_pred hhCcCcccccccCCCCC
Confidence 38999999999999864
No 356
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=70.80 E-value=2 Score=51.24 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.2
Q ss_pred cccccchhhhcccccceecc
Q psy9414 453 KCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.|..||.|+.+||+||+...
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k 209 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDK 209 (847)
T ss_pred cChhhCChHhhCCchhcccc
Confidence 47789999999999999753
No 357
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=70.64 E-value=1 Score=48.37 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=16.4
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
....|..||.|.++||...
T Consensus 356 ~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 356 LPYACSLCGACTEVCPVKI 374 (459)
T ss_pred cchhhccccCCCCcCCCCC
Confidence 4568999999999999864
No 358
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=70.31 E-value=2 Score=52.35 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.1
Q ss_pred cceeccccccccchhhh-cccc
Q psy9414 446 CAIIKENKCIGCTLCIQ-SCPV 466 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~-~CP~ 466 (582)
...||.+.|++|+.|++ .||.
T Consensus 670 K~~Idqs~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 670 KRRIDQSSCNKDFSCLKGFCPS 691 (1165)
T ss_pred cEEECHhHCCCccccccCCCCC
Confidence 46899999999999999 9995
No 359
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=69.30 E-value=1.9 Score=45.78 Aligned_cols=19 Identities=32% Similarity=0.831 Sum_probs=16.1
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
....|++||+|..+||.+.
T Consensus 305 g~~~CvgCGrC~~~CP~~I 323 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYI 323 (344)
T ss_pred chhhCcCcCccccccCCCC
Confidence 3467999999999999864
No 360
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=69.03 E-value=2.4 Score=50.32 Aligned_cols=19 Identities=32% Similarity=0.509 Sum_probs=16.8
Q ss_pred cccccchhhhcccccceec
Q psy9414 453 KCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.|..||.|+.+||+||+..
T Consensus 191 ~~~~cG~cv~vCP~GAl~~ 209 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTG 209 (797)
T ss_pred CccccCCchhhCCcccccc
Confidence 4678999999999999974
No 361
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=68.97 E-value=2.8 Score=48.80 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.7
Q ss_pred cccccchhhhcccccceec
Q psy9414 453 KCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.|..||.|+.+||+||+..
T Consensus 186 ~~~~~G~cv~~CPvgAl~~ 204 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTS 204 (687)
T ss_pred cccccccHHhhCCCccccc
Confidence 3678999999999999975
No 362
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.68 E-value=7.9 Score=38.25 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=50.9
Q ss_pred ccccccccccccCCCcEEecCcccccChHHHHHHHHHc-CCCCCCCCCCC-ceeEeecccCCCccccccchhhhcccccc
Q psy9414 51 MYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKI-DKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIV 128 (582)
Q Consensus 51 ~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l-~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v 128 (582)
+-.|...+|=|.-|+.|+.- |..|.-.|. .++ |- ..+ .+.|.+.++++|.|||||+.+
T Consensus 122 ~~~lg~~~dih~~G~Dl~fp---H~~~~~a~~---~a~~g~------~~~~~~~h~~~v~~~g~KMSKs~Gn-------- 181 (213)
T cd00672 122 MKYLGETFDIHGGGVDLIFP---HHENEIAQS---EAATGK------PFARYWLHTGHLTIDGEKMSKSLGN-------- 181 (213)
T ss_pred HHHcCCCccEEeecCCCCcC---hHHHHHHHH---HHHhCC------CCCcEEEEEEEEeccCcchhhcCCC--------
Confidence 34555566666666666642 222222222 222 22 223 344556889999999999853
Q ss_pred CCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc
Q psy9414 129 DGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 162 (582)
Q Consensus 129 ~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s 162 (582)
..++..+.+. |.+++++-|+......
T Consensus 182 -------~v~~~dll~~-~~~da~R~~~l~~~~~ 207 (213)
T cd00672 182 -------FITVRDALKK-YDPEVLRLALLSSHYR 207 (213)
T ss_pred -------ccCHHHHHHH-cCHHHHHHHHHhCCcC
Confidence 3467777664 9999998887765533
No 363
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=68.56 E-value=2.3 Score=43.19 Aligned_cols=21 Identities=29% Similarity=0.861 Sum_probs=17.9
Q ss_pred ecccCCccccchhhcCccCce
Q psy9414 479 IFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 479 i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
.....|+.||.|+.+||+.++
T Consensus 154 ~~~~~CI~CG~C~saCP~~~~ 174 (250)
T PRK07570 154 FDAAACIGCGACVAACPNGSA 174 (250)
T ss_pred hCccccCCCcccccccCCccc
Confidence 456789999999999998863
No 364
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=68.40 E-value=2.3 Score=51.84 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.1
Q ss_pred cceeccccccccchhhh-cccc
Q psy9414 446 CAIIKENKCIGCTLCIQ-SCPV 466 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~-~CP~ 466 (582)
...||.+.|.+|+.|++ .||.
T Consensus 684 K~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 684 KRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEECHhHCCCccccccCCCCC
Confidence 46899999999999999 9996
No 365
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=68.29 E-value=2.6 Score=49.78 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.4
Q ss_pred ccccchhhhcccccceecc
Q psy9414 454 CIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 454 Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
|..||.|+.+||+||+...
T Consensus 186 ~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 186 SELSGNMIDLCPVGALTSK 204 (776)
T ss_pred CcccCCchhhCCccccccc
Confidence 6679999999999999743
No 366
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=68.15 E-value=1.6 Score=48.02 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=16.4
Q ss_pred eccccccccchhhhcccccc
Q psy9414 449 IKENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~a 468 (582)
..--.|+-||.|..+||.+.
T Consensus 401 ~~l~dCIECg~Ca~vCPs~i 420 (529)
T COG4656 401 HNLLDCIECGACAYVCPSNI 420 (529)
T ss_pred HHhhhhhhhCcchhcCCCCC
Confidence 34567999999999999764
No 367
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=67.93 E-value=14 Score=44.26 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=50.0
Q ss_pred ceeEeeccc-CCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l~-~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
..+-+|.+. .+|.|||||+++. .+...+.+. |.++|+|=|+...+...++..|+++.+... +
T Consensus 511 ~v~~hG~v~d~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~~~~d~~f~~~~~~~~-~ 573 (861)
T TIGR00422 511 EVYIHGLVRDEQGRKMSKSLGNV---------------IDPLDVIEK-YGADALRFTLASLVTPGDDINFDWKRVESA-R 573 (861)
T ss_pred eEEEeeEEECCCCCCCCcCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceecHHHHHHH-H
Confidence 556667665 4799999999643 234444443 779999999999988788999999988764 4
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
..+++.
T Consensus 574 ~~~nkl 579 (861)
T TIGR00422 574 NFLNKL 579 (861)
T ss_pred HHHHHH
Confidence 456655
No 368
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=66.58 E-value=2.8 Score=44.15 Aligned_cols=26 Identities=38% Similarity=0.820 Sum_probs=21.5
Q ss_pred ecccCCccccchhhcCccCceeeeecC
Q psy9414 479 IFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 479 i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
++...|.+||.|+.+||. +|++....
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~~ 27 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDEA 27 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEeccc
Confidence 356789999999999999 88877543
No 369
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=65.60 E-value=2.3 Score=45.27 Aligned_cols=18 Identities=22% Similarity=0.732 Sum_probs=16.2
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
.+.|..|+.|...||+.+
T Consensus 47 a~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HHHCcCcccccccCcCCC
Confidence 578999999999999955
No 370
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=65.31 E-value=4.2 Score=42.70 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=30.2
Q ss_pred cHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHh-hhcc
Q psy9414 138 TLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD-LDIK 184 (582)
Q Consensus 138 tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~-l~~~ 184 (582)
.+..||.+|++|+++.+|+..+|++.... -+.-.+..+.+.. ++..
T Consensus 254 ~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~~f~~~~~ 300 (314)
T PF00749_consen 254 ELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIKQFDLSKI 300 (314)
T ss_dssp HHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHHHC-GGGB
T ss_pred cccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHHHhhHhhc
Confidence 38889999999999999999999996432 3333334444444 4443
No 371
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=63.64 E-value=5.3 Score=42.73 Aligned_cols=19 Identities=26% Similarity=0.858 Sum_probs=16.5
Q ss_pred cccccccchhhhcccccce
Q psy9414 451 ENKCIGCTLCIQSCPVDAI 469 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai 469 (582)
...|..|+.|+..||.+.-
T Consensus 57 ~~~C~~C~~C~~~CP~~i~ 75 (388)
T COG0247 57 LDTCLACGACATACPSGID 75 (388)
T ss_pred HHhCcCccchHhhCCCCCc
Confidence 4789999999999998753
No 372
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=63.54 E-value=12 Score=45.44 Aligned_cols=69 Identities=9% Similarity=0.024 Sum_probs=49.4
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
..+-+|.+ ..+|.|||||+.+.. +...+.++ |.+.|+|-|+...+...++..|+++.+....+
T Consensus 578 ~v~~hG~Vld~~G~KMSKSlGNvI---------------dP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~ 641 (975)
T PRK06039 578 NVLVHGHVLDEDGQKMSKSLGNYV---------------DPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641 (975)
T ss_pred EEEEeeeEECCCCCCcCCCCCCcC---------------CHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHH
Confidence 44455544 347999999985432 34444433 77899999999999877889999999666666
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
..+++.
T Consensus 642 ~~l~kl 647 (975)
T PRK06039 642 KFLLTL 647 (975)
T ss_pred HHHHHH
Confidence 666664
No 373
>PLN02943 aminoacyl-tRNA ligase
Probab=63.01 E-value=14 Score=44.88 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=48.6
Q ss_pred eeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Q psy9414 101 QYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 179 (582)
Q Consensus 101 ~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~ 179 (582)
++-+|.+ ..+|.||||++++.. +...+.+. |.++++|-|+..... .++..|+++.|.. +++
T Consensus 570 v~~hg~v~~~~G~KMSKS~GN~i---------------~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~~ 631 (958)
T PLN02943 570 VYLHGLIRDSQGRKMSKTLGNVI---------------DPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NKA 631 (958)
T ss_pred EEEeccEECCCCCcccCcCCCCC---------------CHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HHH
Confidence 5555644 578999999985432 34444443 889999988887654 6788999999876 677
Q ss_pred hhhccC
Q psy9414 180 DLDIKA 185 (582)
Q Consensus 180 ~l~~~~ 185 (582)
.++++-
T Consensus 632 ~~~kl~ 637 (958)
T PLN02943 632 FTNKLW 637 (958)
T ss_pred HHHHHH
Confidence 777663
No 374
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=60.51 E-value=2.2 Score=47.49 Aligned_cols=18 Identities=28% Similarity=0.912 Sum_probs=15.7
Q ss_pred cccccccchhhhcccccc
Q psy9414 451 ENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~a 468 (582)
-..|+.||.|..+||.+.
T Consensus 184 ~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 184 LYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred CcCCCCcCcccCcCCCCC
Confidence 357999999999999865
No 375
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=59.24 E-value=3.7 Score=41.58 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=16.3
Q ss_pred cccCCccccchhhcCccCc
Q psy9414 480 FSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~A 498 (582)
....|+.||.|..+||+..
T Consensus 150 ~~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhhccCcCcccccCCCCc
Confidence 3568999999999999764
No 376
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=58.95 E-value=21 Score=38.51 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=46.0
Q ss_pred cCcccccChHHHHHHHHHcCCCCCCCCCCC--ceeEeeccc-CCCccccccchhhhccccccCCCCCCCcccHHHHHHcC
Q psy9414 70 CTLEFQDHRPFYEWILNKIDKTNFIKRPFP--KQYEFSRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRG 146 (582)
Q Consensus 70 r~~e~~~~~~~~~~l~~~l~~~~~~~~~~p--~~~~~~~l~-~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G 146 (582)
-|.|.+ +...+.++..++.+.+ ..| .++-++.+. ..|.|||||+++. .++..+.++
T Consensus 302 ~G~D~~-~~h~~~~l~~~~~~~g----~~p~~~v~~hg~v~~~~g~KMSKS~Gn~---------------v~~~dll~~- 360 (382)
T cd00817 302 TGHDII-FFWVARMIMRGLKLTG----KLPFKEVYLHGLVRDEDGRKMSKSLGNV---------------IDPLDVIDG- 360 (382)
T ss_pred eecCcC-chHHHHHHHHHHHhhC----CCchHHeEeeeeEECCCCCCccccCCCC---------------CCHHHHHHh-
Confidence 344532 3444555555443211 234 556666665 7899999998633 356666655
Q ss_pred CCHHHHHHHHHHhcccCCCC
Q psy9414 147 YTPESIKLFCKRIGVSKSDS 166 (582)
Q Consensus 147 ~~p~ai~~~~~~~G~s~~~~ 166 (582)
|.++|+|=|+...+.-.++.
T Consensus 361 ~g~Da~R~~ll~~~~~~~D~ 380 (382)
T cd00817 361 YGADALRFTLASAATQGRDI 380 (382)
T ss_pred cCcHHHHHHHHhCCCccCCC
Confidence 77899998888776444443
No 377
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=56.73 E-value=6.7 Score=43.46 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=44.0
Q ss_pred cccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEc
Q psy9414 136 MPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISN 201 (582)
Q Consensus 136 ~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n 201 (582)
+.++..++..||.|++|.+|+..+|++-.+..+..-.++......--.......+..|..+|...|
T Consensus 257 ~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 257 AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 456777899999999999999999999766555555555444444433333334445665555444
No 378
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=56.35 E-value=4.4 Score=41.13 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=16.2
Q ss_pred cccCCccccchhhcCccCc
Q psy9414 480 FSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~A 498 (582)
....|+.||.|..+||+-.
T Consensus 140 ~~~~CI~CG~C~s~CPv~~ 158 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVR 158 (251)
T ss_pred chhhcccCCcccCcCCccc
Confidence 4568999999999999753
No 379
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.64 E-value=34 Score=39.04 Aligned_cols=96 Identities=14% Similarity=0.002 Sum_probs=55.4
Q ss_pred CCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEE--ecCcccccChHHHHHHH
Q psy9414 8 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHS--ICTLEFQDHRPFYEWIL 85 (582)
Q Consensus 8 ~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githv--ir~~e~~~~~~~~~~l~ 85 (582)
+|..|+..--.. ......|.|+.|++++.-+-|.| .|...+=+-.|-+.+ +=|.||...-.+-..++
T Consensus 288 ~GA~~vdl~~~~--~~gd~~~~vl~KSDGt~lY~t~D---------IAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l 356 (577)
T COG0018 288 DGALVVDLLKFK--KFGDDKDRVLQKSDGTYLYFTRD---------IAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVL 356 (577)
T ss_pred CCeEEEehhhhh--hcCCCCCeEEEEcCCCeeeehhH---------HHHHHHHHhcCCCEEEEEeCCcchhHHHHHHHHH
Confidence 466655443211 34444589999999985444443 332222222222222 23777777777777777
Q ss_pred HHcCCCCCCCCCCC--ceeEee--cccC-CCccccccchh
Q psy9414 86 NKIDKTNFIKRPFP--KQYEFS--RLNL-THTITSKRKLL 120 (582)
Q Consensus 86 ~~l~~~~~~~~~~p--~~~~~~--~l~~-~~~~lSKr~~~ 120 (582)
+.+|+ ..+ ...|.+ .++. +|.+||||.+.
T Consensus 357 ~~~g~------~~~~~~~~h~~~~l~~~~~g~kmStR~G~ 390 (577)
T COG0018 357 ELLGY------GPDKEVLLHQGVGLVRGGEGVKMSTRAGN 390 (577)
T ss_pred HHhcC------CCccceEEEEEEeeeECCCCccccccCCc
Confidence 89998 444 244443 4444 57889999853
No 380
>PLN02959 aminoacyl-tRNA ligase
Probab=55.28 E-value=26 Score=43.09 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=43.6
Q ss_pred eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 101 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 101 ~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
+...|++..+|.||||++++.. +...+-+ .|-+.++|-|+...|-...+..|+++.+.+..+
T Consensus 706 v~v~G~V~~~G~KMSKSkGNvI---------------~p~diI~-kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~ 767 (1084)
T PLN02959 706 FRCNGHLMLNSEKMSKSTGNFL---------------TLRQAIE-EFSADATRFALADAGDGVDDANFVFETANAAIL 767 (1084)
T ss_pred EEEccEEecCCcCccccCCCcC---------------CHHHHHH-HhCchHHHHHHhhcCCccCCCCccHHHHHHHHH
Confidence 5667777789999999986442 3333332 388899999998877666778888775544433
No 381
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=54.08 E-value=6.9 Score=45.33 Aligned_cols=19 Identities=16% Similarity=0.614 Sum_probs=15.1
Q ss_pred eeecccCCccccchhhcCc
Q psy9414 477 HTIFSKLCTGCDLCIKKCP 495 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP 495 (582)
...|.++|+.||.|+.+|.
T Consensus 611 i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLE 629 (652)
T ss_pred eEeccccccCchHHHHHHH
Confidence 3467899999999995553
No 382
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=53.59 E-value=5.1 Score=40.35 Aligned_cols=19 Identities=21% Similarity=0.607 Sum_probs=16.0
Q ss_pred cccCCccccchhhcCccCc
Q psy9414 480 FSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~A 498 (582)
....|+.||.|..+||+-.
T Consensus 147 ~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred chhhccccchhHhhCCCCc
Confidence 4568999999999999654
No 383
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=53.38 E-value=37 Score=40.89 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred ceeEeeccc-CCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRLN-LTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l~-~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
..+-+|.+. .+|.||||++++.. +...+-+. |-++|+|=|+...+....+..|+++.+... +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNvI---------------dP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNVI---------------DPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCCC---------------CHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 566667654 68999999986432 23333332 668999999999887778999999998765 3
Q ss_pred Hhhhc
Q psy9414 179 DDLDI 183 (582)
Q Consensus 179 ~~l~~ 183 (582)
..+++
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 45555
No 384
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=52.07 E-value=5.7 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=15.3
Q ss_pred ccCCccccchhhcCccCc
Q psy9414 481 SKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 481 ~~~C~~Cg~Cv~~CP~~A 498 (582)
...|+.||.|..+||+-.
T Consensus 186 ~~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 186 MYECILCACCSTSCPSYW 203 (276)
T ss_pred hhhCccccccccccCCCc
Confidence 357999999999999653
No 385
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=50.81 E-value=6 Score=39.63 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.0
Q ss_pred cccCCccccchhhcCccCc
Q psy9414 480 FSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~A 498 (582)
....|+.||.|..+||.-.
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~ 158 (234)
T COG0479 140 ELSECILCGCCTAACPSIW 158 (234)
T ss_pred hhhhccccchhhhhCCccc
Confidence 3568999999999999754
No 386
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=50.77 E-value=13 Score=39.74 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=40.1
Q ss_pred cCCCcEEecCccccc---ChHHHHHHH-HHcCCCCCCCCCCCceeEeecccCCCc-cccccchhhhccccccCCCCCCCc
Q psy9414 62 IENITHSICTLEFQD---HRPFYEWIL-NKIDKTNFIKRPFPKQYEFSRLNLTHT-ITSKRKLLKLLEKKIVDGWDDPRM 136 (582)
Q Consensus 62 ~~githvir~~e~~~---~~~~~~~l~-~~l~~~~~~~~~~p~~~~~~~l~~~~~-~lSKr~~~~~v~~~~v~gwdDpr~ 136 (582)
.+||+-=-=|+||.+ |......|. +-||+ .+|...-|-.+.+.|. +|||+++.-
T Consensus 232 ~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~------~pP~~~~YE~~~~~g~~kmSsSkG~~--------------- 290 (360)
T PF01921_consen 232 ALGVDFEPFGKDHASPGGSYDTSKRIAREILGY------EPPVPFPYEFFLDKGGGKMSSSKGNG--------------- 290 (360)
T ss_dssp HTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----------EEEEE--EEES---------------------------
T ss_pred hcCceeccCCCccCCCCCChhhHHHHHHHHhCC------CCCCCCCeeEEEeCCCcccccCCCCc---------------
Confidence 567777788999999 999999999 88999 9998888887666655 999999643
Q ss_pred ccHHHHHHcCCCHHHHHHHHHH
Q psy9414 137 PTLIGMRRRGYTPESIKLFCKR 158 (582)
Q Consensus 137 ~tl~~lr~~G~~p~ai~~~~~~ 158 (582)
.|+....+ =++||.|+-|+..
T Consensus 291 ~t~~e~L~-~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 291 ITPEEWLE-YAPPESLRYLMAR 311 (360)
T ss_dssp --HHHHHT-TS-HHHHHHHHHC
T ss_pred cCHHHHHH-hcCHHHHHHHHcc
Confidence 25655443 3577777655544
No 387
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=47.62 E-value=9 Score=40.88 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=46.7
Q ss_pred CCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeeccc---ccccccccc-cCCCcEEe--cCcccccChHHH
Q psy9414 8 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDA-IENITHSI--CTLEFQDHRPFY 81 (582)
Q Consensus 8 ~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y---~fa~~vdD~-~~githvi--r~~e~~~~~~~~ 81 (582)
+|..++++. ......|.|+.|.+++ +|| |.|...+=. ..+.+-+| =|.||..+-.+=
T Consensus 194 dGa~~i~~~-----~~g~~k~~Vl~ksDGt------------~~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~~hf~~l 256 (354)
T PF00750_consen 194 DGALWIDLT-----KFGDDKDRVLRKSDGT------------STYLTRDIAYHLYRFEEYGFDKIIYVVGADQKGHFKQL 256 (354)
T ss_dssp TTEEEEEGC-----CTSTSS-EEEEETTSE------------B-HHHHHHHHHHHHHCCSS-SEEEEEEEGGGHHHHHHH
T ss_pred CCcEEEech-----hcCCCCcceEEcCCCc------------eEEEcchHHHHHHHHhhhccccEEEEecCchhhHHHHH
Confidence 566665542 1123347799999986 555 555444333 23333332 245565555566
Q ss_pred HHHHHHcCCCCCCCCCCCce-eEeecc-cCCCc-cccccchh
Q psy9414 82 EWILNKIDKTNFIKRPFPKQ-YEFSRL-NLTHT-ITSKRKLL 120 (582)
Q Consensus 82 ~~l~~~l~~~~~~~~~~p~~-~~~~~l-~~~~~-~lSKr~~~ 120 (582)
..++++||+.. .....+ ..|+.+ ..+|. +||+|++.
T Consensus 257 ~~~l~~lg~~~---~~~~~~H~~~g~vl~~~gk~~mstR~G~ 295 (354)
T PF00750_consen 257 FAILEALGYDP---EAVKLQHVSFGVVLLKDGKVKMSTRKGN 295 (354)
T ss_dssp HHHHHHTT-HH---HHCTEEEEEE-EEEETTBEESS-TTTTS
T ss_pred HHHHHHhCCCC---CCCEEEEEEEEEEEcCCCCccccCCCCC
Confidence 67778888610 012222 345544 44565 79999853
No 388
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=46.84 E-value=9.3 Score=38.11 Aligned_cols=21 Identities=33% Similarity=0.874 Sum_probs=19.7
Q ss_pred CCccccchhhcCccCceeeee
Q psy9414 483 LCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 483 ~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.|++|+.|...||+.||....
T Consensus 191 ~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 191 PCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred cccCchhhhccCCccCCcccC
Confidence 799999999999999999874
No 389
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=46.60 E-value=30 Score=41.58 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=46.3
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.++-+|.+ ..+|.||||++.+.. +...+-+. |.++++|-|+... -...+..|+++.|...++
T Consensus 597 ~v~~hG~vl~~~G~KMSKSkGNvI---------------~p~d~i~~-yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 597 NVITHGFTLDEKGRKMSKSLGNVV---------------DPLKVINK-YGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred hhEecceEECCCCCCcCCCCCCCC---------------CHHHHHHH-cCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 34445654 457999999986432 33343332 7799999999988 666788999999887665
Q ss_pred Hhhhc
Q psy9414 179 DDLDI 183 (582)
Q Consensus 179 ~~l~~ 183 (582)
...+.
T Consensus 660 ~~~n~ 664 (861)
T TIGR00392 660 KYRKI 664 (861)
T ss_pred HHHHH
Confidence 55444
No 390
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=45.99 E-value=7.4 Score=40.15 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=21.3
Q ss_pred eecccCCccccchhhcCcc----Cceeeeec
Q psy9414 478 TIFSKLCTGCDLCIKKCPV----NCISMIEV 504 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~----~AI~~~~~ 504 (582)
.++.++|+.||.|+.+|-. +||.+...
T Consensus 208 ~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~R 238 (297)
T PTZ00305 208 RVVLNRCIHCTRCVRFLNEHAQDFNLGMIGR 238 (297)
T ss_pred eecCCcCcCccHHHHHHHHhhCCcEEEEeec
Confidence 3567999999999999973 57777654
No 391
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=44.96 E-value=3 Score=49.63 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=36.6
Q ss_pred CCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCC
Q psy9414 23 NINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDK 90 (582)
Q Consensus 23 n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~ 90 (582)
.|.++|.|++|+++. ||||-||-|+| -||-..++-+.|+-
T Consensus 537 ~P~l~~Lvllklv~~----------lFPTSD~~HpV------------------VTPalllm~~~L~q 576 (840)
T PF04147_consen 537 WPSLSDLVLLKLVGT----------LFPTSDFRHPV------------------VTPALLLMSEYLSQ 576 (840)
T ss_pred CCChhHHHHHHHHHH----------hcCcccccCcc------------------hhHHHHHHHHHHhc
Confidence 789999999999875 89999999998 48999999999997
No 392
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=44.47 E-value=57 Score=39.47 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=51.4
Q ss_pred EecCcccccChHHHHHHHHHcCCCCCCCCCCC-ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHc
Q psy9414 68 SICTLEFQDHRPFYEWILNKIDKTNFIKRPFP-KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRR 145 (582)
Q Consensus 68 vir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p-~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~ 145 (582)
-+=|.|++ +.-.|..+...+.+.+. .+| ..+.+|.+ ..+|.||||++++.. +...+-+
T Consensus 549 ~~~G~Di~-r~Wf~~~l~~~~~~~g~---~P~k~vl~HG~vld~~G~KMSKSlGNvI---------------dP~~ii~- 608 (912)
T PRK05743 549 YLEGSDQH-RGWFQSSLLTSVATRGK---APYKQVLTHGFTVDGKGRKMSKSLGNVI---------------DPQDVIK- 608 (912)
T ss_pred EEeccccc-chHHHHHHHHHHHhcCC---CccceeEEeeeEECCCCCCCCCCCCCcC---------------CHHHHHH-
Confidence 33444443 33445545555444222 222 34455644 458999999986542 2223222
Q ss_pred CCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 146 GYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 146 G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
.|-++++|-|+.. +-...+..|+.+.|..
T Consensus 609 ~yGaDalR~~ll~-~~~~~D~~~s~~~l~~ 637 (912)
T PRK05743 609 KYGADILRLWVAS-TDYSGDVRISDEILKQ 637 (912)
T ss_pred hcChHHHHHHHHh-cCCCCCeeecHHHHHH
Confidence 3789999999987 5556788888887765
No 393
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=43.20 E-value=11 Score=32.24 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.7
Q ss_pred cccceeccccccccchhhhcccc-cceec
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPV-DAIIG 471 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~-~ai~~ 471 (582)
.+.+.++.+.|.-||.|.-+||. +.|..
T Consensus 57 ~g~l~~~yegClECGTCRvlc~~~~~i~W 85 (99)
T COG2440 57 DGKLRFDYEGCLECGTCRVLCPHSGLIQW 85 (99)
T ss_pred CCcEEEeecCeeeccceeEecCCCcceEE
Confidence 35678999999999999999998 66653
No 394
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=42.43 E-value=38 Score=41.58 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=46.9
Q ss_pred ceeEeecccC-CCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l~~-~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
..+-+|.+.. +|.||||++++.. | ...+.+ .|-++++|=|+...+....+..|+++.|... +
T Consensus 524 ~V~~hG~v~d~~G~KMSKSkGNvI----------d-----P~dvIe-~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~ 586 (1052)
T PRK14900 524 TVYLHPMVRDEKGQKMSKTKGNVI----------D-----PLVITE-QYGADALRFTLAALTAQGRDIKLAKERIEGY-R 586 (1052)
T ss_pred eeEecccEECCCCCCccCCCCCCC----------C-----HHHHHH-HhCcHHHHHHHHhcCCCCCCCcccHHHHHHH-H
Confidence 3566676655 8999999985432 1 222222 3778999999998887778889999887554 3
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
..++++
T Consensus 587 ~f~nkl 592 (1052)
T PRK14900 587 AFANKL 592 (1052)
T ss_pred HHHHHH
Confidence 455543
No 395
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=42.42 E-value=9.5 Score=42.02 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=16.3
Q ss_pred cccCCccccchhhcCccCc
Q psy9414 480 FSKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~A 498 (582)
....|+.||.|+++||.+-
T Consensus 371 ~~~aCI~CG~C~~vCPm~L 389 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDI 389 (447)
T ss_pred CccceeECChHhhcCCCCC
Confidence 3457999999999999884
No 396
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=42.40 E-value=10 Score=40.93 Aligned_cols=16 Identities=38% Similarity=1.072 Sum_probs=14.5
Q ss_pred cCCccccchhhcCccC
Q psy9414 482 KLCTGCDLCIKKCPVN 497 (582)
Q Consensus 482 ~~C~~Cg~Cv~~CP~~ 497 (582)
..|+.||.|..+||+-
T Consensus 5 ~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVA 20 (397)
T ss_pred hhCCCCCCCcccCcCc
Confidence 5799999999999975
No 397
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=41.39 E-value=35 Score=36.14 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=35.3
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCC
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDS 166 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~ 166 (582)
.++-++.+ ..+|.||||++.+. .++..+.+. |.++++|-|+...+...++.
T Consensus 285 ~~~~hg~~~~~~g~KmSKS~gn~---------------i~~~~~~~~-~~~D~~R~~l~~~~~~~~d~ 336 (338)
T cd00818 285 NVIVHGFVLDEDGRKMSKSLGNY---------------VDPQEVVDK-YGADALRLWVASSDVYAEDL 336 (338)
T ss_pred eEEEEeeEECCCCCCCCCCCCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCccCCC
Confidence 44445554 45799999998543 356666655 88999999998877544443
No 398
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=38.73 E-value=33 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.2
Q ss_pred cccHHHHHHcCCCHHHHHHHHHH
Q psy9414 136 MPTLIGMRRRGYTPESIKLFCKR 158 (582)
Q Consensus 136 ~~tl~~lr~~G~~p~ai~~~~~~ 158 (582)
+..+..||+.|+++++|...+..
T Consensus 47 l~~i~~lr~~g~~~~~i~~~l~l 69 (70)
T smart00422 47 LRFIKRLKELGFSLEEIKELLEL 69 (70)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Confidence 44688899999999999987764
No 399
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=37.26 E-value=12 Score=40.02 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=34.9
Q ss_pred ccccccchhhhcccc--cceeccc-ccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 452 NKCIGCTLCIQSCPV--DAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~--~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
.+|+.|+.| ++|-. |.+.+.. .....+-.+.|..|.-|+..||..+|......
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~~ 57 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEISSMLEKISISLSDCLACSGCITSCEVKAISLQSGK 57 (411)
T ss_pred CccccCccc-cccccccceEEEeecccccccchhhhhhhhccccCChHHhhhhcchH
Confidence 579999999 88875 3222221 11123345678888889999999888766543
No 400
>KOG2007|consensus
Probab=35.52 E-value=90 Score=34.73 Aligned_cols=118 Identities=9% Similarity=0.043 Sum_probs=72.3
Q ss_pred eccCCCCCCCCcEEEEecCCCccccCCeee-eecccc----------cccccccccCCCcEEecCcccccChHHHHHHHH
Q psy9414 18 NMKSKNINMRDPIIYRIRHVNHYRTNNNWC-IYPMYD----------YAHPISDAIENITHSICTLEFQDHRPFYEWILN 86 (582)
Q Consensus 18 d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~-~~P~Y~----------fa~~vdD~~~githvir~~e~~~~~~~~~~l~~ 86 (582)
|-.-.+|+ |+.++...+.--|.=-..|= +-|-.| |..-+|=|-=||.-.+ -|++|---|-.-+-
T Consensus 210 ds~KR~p~--DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~F---PHHeNEiAQ~eA~~ 284 (586)
T KOG2007|consen 210 DSRKRSPA--DFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAF---PHHENEIAQSEAAF 284 (586)
T ss_pred cccCCChh--hhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccC---CCcccHHHHHHHHh
Confidence 33345565 88988887643332222221 233333 3333444444444432 46777766665443
Q ss_pred HcC-CCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccC
Q psy9414 87 KID-KTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSK 163 (582)
Q Consensus 87 ~l~-~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~ 163 (582)
.-. | --++.|-|+|.+.|.||||+-- -+.||+.... -|+|.+++-|+..-.|..
T Consensus 285 ~~~~w-------VnYflHtGhL~i~g~KMSKSLk---------------NFiTIke~Lk-~~sp~qLRl~fl~~~wr~ 339 (586)
T KOG2007|consen 285 DDSQW-------VNYFLHTGHLTINGEKMSKSLK---------------NFITIKEALK-KYSPRQLRLAFLLHQWRS 339 (586)
T ss_pred cCCcc-------ceeEEEcCeeeeccchhhhhhc---------------cceeHHHHHH-hcCHHHHHHHHHHHHhcC
Confidence 222 5 2367788999999999999952 3558887554 499999999998887754
No 401
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=35.04 E-value=21 Score=39.34 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.3
Q ss_pred eccccccc--cchhhhcccccc
Q psy9414 449 IKENKCIG--CTLCIQSCPVDA 468 (582)
Q Consensus 449 id~~~Ci~--Cg~Cv~~CP~~a 468 (582)
.+-..|+- ||.|.-+||...
T Consensus 410 ~~~~~C~EedCG~CsyVCPski 431 (448)
T PRK05352 410 LGALELDEEDLALCTFVCPGKY 431 (448)
T ss_pred cCchhcCccccCCCccCCCCCc
Confidence 45567999 999999999753
No 402
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=33.43 E-value=15 Score=29.36 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred cceeccccccccchhhhcccccceecccccceeecccC--CccccchhhcCccCceeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKL--CTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~--C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.+.++...|..-|.|++-=|. .+.. +..+.|.++. -..--.=+..||+|||++.
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~-vF~~--~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPK-VFNL--GRKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHh-hccc--CCCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 456778899999999986553 2211 2222333321 1122346788999999875
No 403
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=32.90 E-value=38 Score=28.20 Aligned_cols=20 Identities=45% Similarity=0.821 Sum_probs=14.4
Q ss_pred CcccHHHHHHcCCCHHHHHH
Q psy9414 135 RMPTLIGMRRRGYTPESIKL 154 (582)
Q Consensus 135 r~~tl~~lr~~G~~p~ai~~ 154 (582)
+-.++-||||+||+++.|..
T Consensus 16 ~GlN~vGLrR~Gfs~~~i~~ 35 (83)
T PF13720_consen 16 RGLNLVGLRRRGFSKEEISA 35 (83)
T ss_dssp EEE-HHHHHHTTS-HHHHHH
T ss_pred eeeeHHHHHHcCCCHHHHHH
Confidence 34578899999999997754
No 404
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=32.77 E-value=15 Score=42.56 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=16.1
Q ss_pred cccchhhhcccccceecc
Q psy9414 455 IGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 455 i~Cg~Cv~~CP~~ai~~~ 472 (582)
..||.|+.+||+||+...
T Consensus 187 e~cGncv~vCPvGALt~K 204 (693)
T COG1034 187 ELCGNCVDVCPVGALTSK 204 (693)
T ss_pred ccccceeeeccccccccC
Confidence 689999999999999753
No 405
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=32.65 E-value=27 Score=37.52 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=40.3
Q ss_pred CCCcEEecCcccccChHHHHHHHHHc----CCCCCCCCCCCceeEeecc-cCCCccccccch
Q psy9414 63 ENITHSICTLEFQDHRPFYEWILNKI----DKTNFIKRPFPKQYEFSRL-NLTHTITSKRKL 119 (582)
Q Consensus 63 ~githvir~~e~~~~~~~~~~l~~~l----~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~ 119 (582)
..-++|..|.|-..+-..-.-+.+.| |+ ..|...+...+ .++|+||||++-
T Consensus 202 ~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf------~~P~~l~~~~lpgL~G~KMSkS~~ 257 (368)
T PRK12285 202 PKPTLVPVGIDQDPHIRLTRDIAERLHGGYGF------IKPSSTYHKFMPGLTGGKMSSSKP 257 (368)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhhhcCC------CCchhHhhhcccCCCCCcCCCCCC
Confidence 35579999999887777777777778 88 78887776655 678999999973
No 406
>PHA02591 hypothetical protein; Provisional
Probab=30.71 E-value=46 Score=27.41 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=30.2
Q ss_pred ccccchhhhcccc----ccCCCCCCCcccHH-HHHHcCCCHHHHHHHHHHhcccC
Q psy9414 114 TSKRKLLKLLEKK----IVDGWDDPRMPTLI-GMRRRGYTPESIKLFCKRIGVSK 163 (582)
Q Consensus 114 lSKr~~~~~v~~~----~v~gwdDpr~~tl~-~lr~~G~~p~ai~~~~~~~G~s~ 163 (582)
+|-|++.+.|.-| ++..=||-+ ++. .|+++|++.+.|. ..||++.
T Consensus 24 ~~~~~m~k~vqv~~~ryfi~~~dd~~--~vA~eL~eqGlSqeqIA---~~LGVsq 73 (83)
T PHA02591 24 IGEKKMQKVVQVGQTRYFVESEDDLI--SVTHELARKGFTVEKIA---SLLGVSV 73 (83)
T ss_pred hhhHhHHHhheeCCEEEEEeccchHH--HHHHHHHHcCCCHHHHH---HHhCCCH
Confidence 4566666666554 555556643 444 4999999999986 4667763
No 407
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=30.49 E-value=1.4e+02 Score=32.70 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=47.2
Q ss_pred ccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccch
Q psy9414 51 MYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKL 119 (582)
Q Consensus 51 ~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~ 119 (582)
.|||-+....+ +++.++-|.|-..|-..=.-+.+.++. ..|.-...+.| +.+|+||||+..
T Consensus 175 a~D~~~l~~~~--~~~iq~gG~DQ~~ni~~grdl~~r~~~------~~~~~lt~PlL~g~dG~KMsKS~~ 236 (410)
T PRK13354 175 AYDFVHLNRKE--DVDLQIGGTDQWGNILMGRDLQRKLEG------EEQFGLTMPLLEGADGTKMGKSAG 236 (410)
T ss_pred hhhHHHHhccC--CCCEEEecHHHHHHHHHHHHHHHHhCC------CCceEeccCCccCCCCCccCCCCC
Confidence 56766654332 888999999988888888888899998 77766666655 677999999973
No 408
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=27.66 E-value=20 Score=38.71 Aligned_cols=18 Identities=44% Similarity=1.139 Sum_probs=15.3
Q ss_pred cccccchhhhccccccee
Q psy9414 453 KCIGCTLCIQSCPVDAII 470 (582)
Q Consensus 453 ~Ci~Cg~Cv~~CP~~ai~ 470 (582)
.|++|+.|+++|+.....
T Consensus 246 ~CI~C~~CidaCd~~~~~ 263 (386)
T COG0348 246 ECIGCGRCIDACDDDMLK 263 (386)
T ss_pred ccccHhhHhhhCCHHhhe
Confidence 599999999999976543
No 409
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=27.60 E-value=13 Score=41.18 Aligned_cols=22 Identities=32% Similarity=0.939 Sum_probs=17.3
Q ss_pred eeccccccccch--hhhcccccce
Q psy9414 448 IIKENKCIGCTL--CIQSCPVDAI 469 (582)
Q Consensus 448 ~id~~~Ci~Cg~--Cv~~CP~~ai 469 (582)
....++|..|+. |+..||.++.
T Consensus 40 ~~~a~rc~~c~~~~C~~~CP~~~~ 63 (471)
T PRK12810 40 KIQAARCMDCGIPFCHWGCPVHNY 63 (471)
T ss_pred HHHHHhccCCCCCcccccCCCCCc
Confidence 345678999965 9999998764
No 410
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=26.50 E-value=36 Score=36.67 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=66.6
Q ss_pred ccccCCCC-CCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhhccCCceeeee--cceEEEEEc
Q psy9414 125 KKIVDGWD-DPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVL--NPIKLIISN 201 (582)
Q Consensus 125 ~~~v~gwd-Dpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~--~p~~~~i~n 201 (582)
.+....|+ |.-+ +|+|+....-.-.++.+|+..-|+...+..+..+.|.+-.+..|.+.-.+.+-|. +|-.|.|.+
T Consensus 154 ~~V~~~W~~dg~l-~LsGyC~~s~~~~~Lq~~L~~~gi~yr~~lvc~D~L~~~V~~IL~~~GY~~i~V~~~~pG~v~I~G 232 (395)
T PRK15367 154 HYVRAQWKEDGSL-QLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLIREVQDVLIKMGYPHAEVSSEGPGSVLIHD 232 (395)
T ss_pred cceEEEECCCCcE-EEEEEECChHHHHHHHHHHHhcCceeeecceeHHHHHHHHHHHHHHcCcCceEEecCCCCeEEEEe
Confidence 45667898 6666 9999999999999999999999999999999999999999999999998877775 477777775
Q ss_pred c
Q psy9414 202 F 202 (582)
Q Consensus 202 ~ 202 (582)
.
T Consensus 233 ~ 233 (395)
T PRK15367 233 D 233 (395)
T ss_pred e
Confidence 4
No 411
>PLN02882 aminoacyl-tRNA ligase
Probab=25.76 E-value=1e+02 Score=38.43 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=43.6
Q ss_pred ceeEeecccC-CCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc-CCCCcccHHHHHHHH
Q psy9414 100 KQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS-KSDSWINIEILEQAL 177 (582)
Q Consensus 100 ~~~~~~~l~~-~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s-~~~~~~~~~~l~~~~ 177 (582)
..+.+|.+.. +|.||||++.+.. ||. .-+.+ |-++|+|-|+...... ..+..|+.+.+....
T Consensus 600 ~VivhG~vlde~G~KMSKSlGNvI----------dP~----evi~~--YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~ 663 (1159)
T PLN02882 600 NLICNGLVLAEDGKKMSKSLKNYP----------DPN----EVIDK--YGADALRLYLINSPVVRAEPLRFKEEGVFGVV 663 (1159)
T ss_pred eeEEccEEECCCCCCcccCCCCCC----------CHH----HHHHH--hCcHHHHHHHHhCCcccCcCcccCHHHHHHHH
Confidence 3455566544 6999999985442 231 11333 6689999999876654 345688888777665
Q ss_pred HHhhhcc
Q psy9414 178 RDDLDIK 184 (582)
Q Consensus 178 ~~~l~~~ 184 (582)
++.+.+.
T Consensus 664 ~~~l~kl 670 (1159)
T PLN02882 664 KDVFLPW 670 (1159)
T ss_pred HHHHHHH
Confidence 5554433
No 412
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.70 E-value=99 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=14.8
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q psy9414 139 LIGMRRRGYTPESIKLFCKR 158 (582)
Q Consensus 139 l~~lr~~G~~p~ai~~~~~~ 158 (582)
|..-++.|++++.|++|+..
T Consensus 9 i~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 9 IKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh
Confidence 44568899999999999975
No 413
>KOG1799|consensus
Probab=24.80 E-value=26 Score=36.97 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=36.2
Q ss_pred Ccccceeccccccccchhhhcccc---cceecccccceeecccCCc-cccchhhcCcc
Q psy9414 443 SRCCAIIKENKCIGCTLCIQSCPV---DAIIGAAKHMHTIFSKLCT-GCDLCIKKCPV 496 (582)
Q Consensus 443 ~~~~~~id~~~Ci~Cg~Cv~~CP~---~ai~~~~~~~~~i~~~~C~-~Cg~Cv~~CP~ 496 (582)
....+.|+..-|+-|+.|-.-|-. +|+..+.+....--...|. +||+|...||.
T Consensus 202 ~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~ 259 (471)
T KOG1799|consen 202 EPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPI 259 (471)
T ss_pred CCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChh
Confidence 344678899999999999988875 2333222211222345677 89999998884
No 414
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.79 E-value=69 Score=32.86 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=41.4
Q ss_pred CCCcEEecCcccccChHHHHHHHHHcC-CCCCCCCCCCceeEeecc-cCCCccccccch
Q psy9414 63 ENITHSICTLEFQDHRPFYEWILNKID-KTNFIKRPFPKQYEFSRL-NLTHTITSKRKL 119 (582)
Q Consensus 63 ~githvir~~e~~~~~~~~~~l~~~l~-~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~ 119 (582)
.++++++-|.|-..+-..=.-+.+.++ . ..|.....++| .++|.||||+..
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~------~~p~~l~~p~l~~l~G~KMSKS~~ 204 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGF------TIAEGLTIPLVTKLDGPKFGKSES 204 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCC------CCCeEEeeccccCCCCCcCCCCCC
Confidence 567999999998888887788888885 5 67877887865 578999999974
No 415
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=24.64 E-value=2e+02 Score=35.08 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=39.9
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
..+-+|.+ ..+|.||||++++.. || ..+- ..|-++++|-|+.... -.++..|+.+.|..
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNvI----------dP-----~~ii-~~yGaD~lRl~lls~~-~~~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNTV----------SP-----QDVI-KQSGADILRLWVASVD-YSDDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCcC----------CH-----HHHH-HhcCHHHHHHHHHhCC-CCCCcccCHHHHHH
Confidence 55566755 458999999986442 22 2222 2488999999998743 45677888887655
No 416
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.54 E-value=38 Score=34.62 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhccccccCCCCCCCc---cc
Q psy9414 63 ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRM---PT 138 (582)
Q Consensus 63 ~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~---~t 138 (582)
.+.++++-|.|-..+-..-.-+.+.+++ ..|...+.+.| +++|.||||+..... | ++-. -+
T Consensus 150 l~~~l~~~G~DQ~~~i~~~rd~a~r~~~------~~~~~l~~~ll~~l~G~KMSKS~~~~~--------~-i~l~dsp~~ 214 (269)
T cd00805 150 LDVDLQLGGSDQRGNITLGRDLIRKLGY------KKVVGLTTPLLTGLDGGKMSKSEGNAI--------W-DPVLDSPYD 214 (269)
T ss_pred HhCCeeEecHHHHHHHHHHHHHHHHhCC------CCcEEEeeccccCCCCCcccCCCCCcc--------c-ccCCCCHHH
Confidence 4569999999999999999999999998 78888888866 578999999974321 2 2211 24
Q ss_pred HHHHHHcCCCHHHHHHHHHHhc
Q psy9414 139 LIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 139 l~~lr~~G~~p~ai~~~~~~~G 160 (582)
|...-++-+++. +.+|+..+-
T Consensus 215 i~~Ki~~a~~~~-v~~~l~~~~ 235 (269)
T cd00805 215 VYQKIRNAFDPD-VLEFLKLFT 235 (269)
T ss_pred HHHHHHcCCcHH-HHHHHHHHH
Confidence 555555567764 345555443
No 417
>KOG0436|consensus
Probab=23.29 E-value=70 Score=34.78 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCCcee-EeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 97 PFPKQY-EFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 97 ~~p~~~-~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
..|..+ -+|+....|.||||+-++.. ||+ .| -+-|.+.+++=|+.+.|.-.++..++.++|..
T Consensus 327 plP~~I~vHghwt~ngmKMsKSLGNvv----------dP~-----~l-~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k 390 (578)
T KOG0436|consen 327 PLPKMIFVHGHWTKNGMKMSKSLGNVV----------DPF-----EL-VQKYGVDAVRYFLLREGELGNDGDYSEEKLIK 390 (578)
T ss_pred CCccEEEEeeeeeecceecchhhcccc----------CHH-----HH-HHHhCccceeeEeeeccccCCCCCccHHHHHH
Confidence 556544 45688899999999965442 232 11 23477889999999999999999999999888
Q ss_pred HHHHhhhc
Q psy9414 176 ALRDDLDI 183 (582)
Q Consensus 176 ~~~~~l~~ 183 (582)
....+|-.
T Consensus 391 ~~n~~La~ 398 (578)
T KOG0436|consen 391 IVNAHLAN 398 (578)
T ss_pred HHHHHHHH
Confidence 77666543
No 418
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.25 E-value=83 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=15.7
Q ss_pred HHHHHcCCCHHHHHHHHHHh
Q psy9414 140 IGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 140 ~~lr~~G~~p~ai~~~~~~~ 159 (582)
-.|.+.|+.|+|+...+..+
T Consensus 28 i~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 28 IELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHCCCCHHHHHHHHHHh
Confidence 35899999999998766543
No 419
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=22.71 E-value=1.8e+02 Score=33.39 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=44.0
Q ss_pred CCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHH
Q psy9414 64 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGM 142 (582)
Q Consensus 64 githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~l 142 (582)
-++-.+-|.|+..+ -++..++-...+.+ ...-+..+.+|.+ ..+|.||||++++.. +...+
T Consensus 514 P~D~~~~G~D~~~~-W~~~~l~~~~~l~~--~~pfk~v~~hG~vld~~G~KMSKS~GNvi---------------~p~~i 575 (601)
T PF00133_consen 514 PVDLYIEGKDQIRG-WFQSSLFLSVALFG--KEPFKKVITHGFVLDEDGRKMSKSKGNVI---------------DPEDI 575 (601)
T ss_dssp SBSEEEEEGGGTTT-HHHHHHHHHHHHSS--STSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHH
T ss_pred CcccccCCccchhh-HHHHhHhhcccccc--CCchheeeecccccccceeecccCCCccc---------------CHHHH
Confidence 34555556666544 34444443322210 1122456667754 568999999986532 44555
Q ss_pred HHcCCCHHHHHHHHHHhcccCCCCcc
Q psy9414 143 RRRGYTPESIKLFCKRIGVSKSDSWI 168 (582)
Q Consensus 143 r~~G~~p~ai~~~~~~~G~s~~~~~~ 168 (582)
.++ |-++++|-|+...+-...+..|
T Consensus 576 i~~-yGaD~lRl~~~~~~~~~~D~~~ 600 (601)
T PF00133_consen 576 IEK-YGADALRLWLASSADPGQDINF 600 (601)
T ss_dssp HHH-T-HHHHHHHHHHHS-TTS-EEE
T ss_pred HHH-hCcHHHHHHHHhcCCcccCccc
Confidence 443 7788888888766655444433
No 420
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=22.71 E-value=62 Score=33.33 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=41.9
Q ss_pred cCCCcEEecCcccccChHHHHHHHHHcC------CCCCCCCCCCceeEe--ecc-cCCC--ccccccch
Q psy9414 62 IENITHSICTLEFQDHRPFYEWILNKID------KTNFIKRPFPKQYEF--SRL-NLTH--TITSKRKL 119 (582)
Q Consensus 62 ~~githvir~~e~~~~~~~~~~l~~~l~------~~~~~~~~~p~~~~~--~~l-~~~~--~~lSKr~~ 119 (582)
+.+.++|..|.|...+-..-.-+.+.|+ + ..|...+- ++| +++| .||||+..
T Consensus 135 ~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~------~~P~~l~~~~~~i~~l~g~~~KMSKS~~ 197 (280)
T cd00806 135 LYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIF------PKPAALLSKGAFLPGLQGPSKKMSKSDP 197 (280)
T ss_pred hccCCEEeeccccHHHHHHHHHHHHHhcccccccc------CCCeeeccCCCccccCCCCCCcccCCCC
Confidence 4566999999999999999999999999 5 67877765 554 4665 49999974
No 421
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=22.66 E-value=48 Score=31.32 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=28.7
Q ss_pred CCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc-ccCCC
Q psy9414 129 DGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG-VSKSD 165 (582)
Q Consensus 129 ~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G-~s~~~ 165 (582)
+.|.|.|.-.|+.|...|++...|.. .|| +|++.
T Consensus 1 M~Wtde~~~~L~~lw~~G~SasqIA~---~lg~vsRnA 35 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAEGLSASQIAR---QLGGVSRNA 35 (162)
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHH---HhCCcchhh
Confidence 47999999999999999999999964 556 77653
No 422
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=22.51 E-value=1.9e+02 Score=34.56 Aligned_cols=61 Identities=18% Similarity=0.016 Sum_probs=41.3
Q ss_pred eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHHh
Q psy9414 101 QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180 (582)
Q Consensus 101 ~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~~ 180 (582)
.++.|.+ ||||++.+. .+...+.++ |.++++|-|+...|--.++..++.+.|... ++.
T Consensus 563 v~~~G~v-----KMSKS~GN~---------------i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~-~~~ 620 (805)
T PRK00390 563 LLTQGMV-----KMSKSKGNV---------------VDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA-YRF 620 (805)
T ss_pred heecCcE-----EeCCCCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH-HHH
Confidence 4455555 999998643 245554443 889999999998877667778887776654 333
Q ss_pred hhc
Q psy9414 181 LDI 183 (582)
Q Consensus 181 l~~ 183 (582)
+++
T Consensus 621 l~k 623 (805)
T PRK00390 621 LQR 623 (805)
T ss_pred HHH
Confidence 443
No 423
>KOG4258|consensus
Probab=22.02 E-value=22 Score=41.65 Aligned_cols=18 Identities=33% Similarity=1.235 Sum_probs=12.1
Q ss_pred cccccccc------chhhhccccc
Q psy9414 450 KENKCIGC------TLCIQSCPVD 467 (582)
Q Consensus 450 d~~~Ci~C------g~Cv~~CP~~ 467 (582)
|+..|..| |.|+.+||.+
T Consensus 248 dptaC~aCr~~y~~G~CV~~Cp~~ 271 (1025)
T KOG4258|consen 248 DPTACVACRGLYDDGVCVEACPPD 271 (1025)
T ss_pred ChhHhHHhhccccCCceeccCCcc
Confidence 34567766 6788888854
No 424
>KOG4258|consensus
Probab=21.38 E-value=56 Score=38.46 Aligned_cols=23 Identities=22% Similarity=0.735 Sum_probs=17.0
Q ss_pred cccCCccc------cchhhcCccCceeee
Q psy9414 480 FSKLCTGC------DLCIKKCPVNCISMI 502 (582)
Q Consensus 480 ~~~~C~~C------g~Cv~~CP~~AI~~~ 502 (582)
++..|..| |.|++.||.+--.+.
T Consensus 248 dptaC~aCr~~y~~G~CV~~Cp~~~Y~~e 276 (1025)
T KOG4258|consen 248 DPTACVACRGLYDDGVCVEACPPDYYLFE 276 (1025)
T ss_pred ChhHhHHhhccccCCceeccCCcchhhhc
Confidence 45678888 789999998754443
No 425
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=20.88 E-value=68 Score=29.44 Aligned_cols=40 Identities=23% Similarity=0.511 Sum_probs=26.2
Q ss_pred ccchhhhcccccceecccccceeec-ccCCccccchhhcCccCc
Q psy9414 456 GCTLCIQSCPVDAIIGAAKHMHTIF-SKLCTGCDLCIKKCPVNC 498 (582)
Q Consensus 456 ~Cg~Cv~~CP~~ai~~~~~~~~~i~-~~~C~~Cg~Cv~~CP~~A 498 (582)
.||.|-..||++.+--.+. =++ ...=..||.|-..||.|.
T Consensus 86 nCG~Cg~~C~~g~~cC~G~---Cvd~~~d~~~CG~Cg~~C~~G~ 126 (136)
T PF04885_consen 86 NCGACGNKCPYGQTCCGGQ---CVDLNSDPRHCGACGNKCPPGQ 126 (136)
T ss_pred ccHhhcCCCCCCceecCCE---eECCCCCccccCCCCCcCCCcC
Confidence 5888889999986544221 112 123347899999998763
No 426
>KOG1247|consensus
Probab=20.78 E-value=1.2e+02 Score=33.09 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHcCCCCC-------------CCCCCCceeEee---cccCCCccccccchhhhccccccCCCCCCCcccHH
Q psy9414 77 HRPFYEWILNKIDKTNF-------------IKRPFPKQYEFS---RLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLI 140 (582)
Q Consensus 77 ~~~~~~~l~~~l~~~~~-------------~~~~~p~~~~~~---~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~ 140 (582)
+.|-|.-||+-+|..++ -.+..+..-|.+ -||.+.+|.||+... | |-
T Consensus 291 knpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYLnyE~gKFSKSrgv-----G------------vF 353 (567)
T KOG1247|consen 291 KNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYLNYEDGKFSKSRGV-----G------------VF 353 (567)
T ss_pred cCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhhccccCcccccccc-----c------------cc
Confidence 56777778888876321 023344444444 467788999999731 1 11
Q ss_pred H--HHHcCCCHHHHHHHHHHhcccCCCCcccHHHHH-HHHHHhhhcc
Q psy9414 141 G--MRRRGYTPESIKLFCKRIGVSKSDSWINIEILE-QALRDDLDIK 184 (582)
Q Consensus 141 ~--lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~-~~~~~~l~~~ 184 (582)
| ....|++|+.-+=|+..+-.-.+++.|+|+.+. ..|-+-|++.
T Consensus 354 G~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NL 400 (567)
T KOG1247|consen 354 GNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNL 400 (567)
T ss_pred ccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHH
Confidence 2 467899999888889999888889999998654 4555555544
No 427
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=20.43 E-value=1.5e+02 Score=37.10 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=45.8
Q ss_pred eeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcc-cCCCCcccHHHHHHHHH
Q psy9414 101 QYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGV-SKSDSWINIEILEQALR 178 (582)
Q Consensus 101 ~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~-s~~~~~~~~~~l~~~~~ 178 (582)
.+-+|++ .-+|.||||++++.. ||- .-+. .|-++|+|-|+...+. ...+..|+.+.+....|
T Consensus 707 VlvHG~Vld~dG~KMSKSlGNvI----------DP~----evI~--kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r 770 (1205)
T PTZ00427 707 LICNGLVLASDGKKMSKRLKNYP----------DPL----YILD--KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK 770 (1205)
T ss_pred eEEccEEEcCCCCCcccCCCCCC----------CHH----HHHH--hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH
Confidence 3444543 457999999986442 222 1233 3668999999988765 35677899998877777
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
+.+.+.
T Consensus 771 ~~l~kl 776 (1205)
T PTZ00427 771 SFILPF 776 (1205)
T ss_pred HHHHHH
Confidence 776554
Done!