Query psy9414
Match_columns 582
No_of_seqs 542 out of 5129
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:34:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 2.3E-93 7.8E-98 776.0 27.4 361 1-381 160-522 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 1.7E-88 5.7E-93 765.6 29.5 356 1-383 200-602 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 2E-77 6.7E-82 651.0 21.8 309 1-381 225-535 (553)
4 4gri_A Glutamate--tRNA ligase; 100.0 2.9E-33 1E-37 307.1 5.0 160 5-187 167-354 (512)
5 4g6z_A Glutamate-tRNA ligase; 100.0 1.9E-32 6.4E-37 295.9 9.9 144 9-186 163-343 (490)
6 2cfo_A Glutamyl-tRNA synthetas 100.0 3.5E-31 1.2E-35 288.0 7.7 148 10-186 141-328 (492)
7 1j09_A Glutamyl-tRNA synthetas 100.0 6.7E-31 2.3E-35 284.2 8.9 154 10-201 143-314 (468)
8 2ja2_A Glutamyl-tRNA synthetas 100.0 2.6E-30 8.8E-35 280.7 7.5 144 10-187 153-338 (498)
9 3afh_A Glutamyl-tRNA synthetas 100.0 3.7E-30 1.3E-34 279.5 8.7 143 10-186 156-334 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 4.1E-29 1.4E-33 277.1 8.8 144 10-187 260-439 (592)
11 2o5r_A Glutamyl-tRNA synthetas 99.9 4E-28 1.4E-32 263.8 7.6 144 10-187 163-343 (481)
12 1nzj_A Hypothetical protein YA 99.9 2.1E-23 7.3E-28 213.5 1.5 125 10-172 128-269 (298)
13 3i9v_3 NADH-quinone oxidoreduc 99.3 3E-12 1E-16 147.8 7.4 108 397-504 107-240 (783)
14 3c8y_A Iron hydrogenase 1; dit 99.2 5.6E-12 1.9E-16 140.5 5.8 105 398-503 87-209 (574)
15 3eun_A Ferredoxin; electron tr 99.1 4.2E-11 1.4E-15 98.6 4.5 56 448-504 2-63 (82)
16 1dax_A Ferredoxin I; electron 99.1 2.9E-11 9.8E-16 94.4 2.6 56 447-503 4-63 (64)
17 2fdn_A Ferredoxin; electron tr 99.1 8.4E-11 2.9E-15 89.0 4.8 50 451-501 5-54 (55)
18 1dwl_A Ferredoxin I; electron 99.1 9.9E-11 3.4E-15 89.4 5.1 54 447-501 2-58 (59)
19 1h98_A Ferredoxin; electron tr 99.1 7E-11 2.4E-15 96.3 4.3 56 448-504 2-59 (78)
20 1rgv_A Ferredoxin; electron tr 99.1 6.4E-11 2.2E-15 96.9 3.8 56 448-504 2-63 (80)
21 1xer_A Ferredoxin; electron tr 99.1 5.1E-11 1.8E-15 102.2 3.1 58 445-502 36-101 (103)
22 2ivf_B Ethylbenzene dehydrogen 99.1 3.1E-11 1.1E-15 125.8 2.0 84 385-505 149-241 (352)
23 1bc6_A 7-Fe ferredoxin; electr 99.1 7.4E-11 2.5E-15 95.8 3.8 55 448-503 2-58 (77)
24 7fd1_A FD1, protein (7-Fe ferr 99.0 9.6E-11 3.3E-15 101.3 4.6 56 448-504 2-59 (106)
25 2fgo_A Ferredoxin; allochromat 99.0 8.5E-11 2.9E-15 96.7 4.0 56 448-504 2-63 (82)
26 2vpz_B NRFC protein; oxidoredu 99.0 1.2E-10 4.2E-15 112.0 5.5 82 385-505 56-146 (195)
27 1rof_A Ferredoxin; electron tr 99.0 8.2E-11 2.8E-15 90.2 3.2 55 447-502 3-59 (60)
28 1f2g_A Ferredoxin II; electron 99.0 7.5E-11 2.6E-15 90.1 2.8 53 447-501 2-57 (58)
29 1jb0_C Photosystem I iron-sulf 99.0 9.6E-11 3.3E-15 95.4 3.3 59 447-505 3-68 (80)
30 1iqz_A Ferredoxin; iron-sulfer 99.0 8.4E-11 2.9E-15 96.5 2.6 58 446-504 3-71 (81)
31 1ti6_B Pyrogallol hydroxytrans 99.0 7.4E-11 2.5E-15 119.3 2.7 82 385-505 66-160 (274)
32 2zvs_A Uncharacterized ferredo 99.0 1.5E-10 5E-15 96.0 3.7 56 448-504 2-64 (85)
33 2v2k_A Ferredoxin; iron, trans 99.0 3.5E-10 1.2E-14 97.5 4.7 56 448-504 2-59 (105)
34 3gyx_B Adenylylsulfate reducta 98.9 2.8E-10 9.5E-15 106.7 3.8 59 447-505 2-67 (166)
35 3i9v_9 NADH-quinone oxidoreduc 98.9 2.6E-10 8.7E-15 107.9 3.5 56 450-505 49-119 (182)
36 1kqf_B FDH-N beta S, formate d 98.9 1.7E-10 5.9E-15 117.9 1.8 82 385-504 98-189 (294)
37 1jnr_B Adenylylsulfate reducta 98.9 4.1E-10 1.4E-14 103.7 3.8 59 447-505 3-68 (150)
38 1h0h_B Formate dehydrogenase ( 98.9 4.7E-10 1.6E-14 109.5 3.7 83 385-504 70-166 (214)
39 1hfe_L Protein (Fe-only hydrog 98.9 6.2E-10 2.1E-14 119.4 4.7 62 440-501 20-83 (421)
40 1sj1_A Ferredoxin; thermostabi 98.9 5.8E-10 2E-14 87.1 1.9 57 446-503 3-65 (66)
41 1q16_B Respiratory nitrate red 98.9 5E-10 1.7E-14 121.5 2.0 82 385-503 182-272 (512)
42 2c42_A Pyruvate-ferredoxin oxi 98.7 9.6E-09 3.3E-13 122.9 6.2 60 446-505 680-767 (1231)
43 2vpz_B NRFC protein; oxidoredu 98.6 1.7E-08 6E-13 96.9 3.8 59 446-504 50-110 (195)
44 2ivf_B Ethylbenzene dehydrogen 98.6 1.9E-08 6.4E-13 104.8 3.9 60 445-504 142-204 (352)
45 1q16_B Respiratory nitrate red 98.5 6.7E-08 2.3E-12 104.8 4.3 60 445-504 175-237 (512)
46 1gte_A Dihydropyrimidine dehyd 98.4 9E-08 3.1E-12 113.6 4.0 61 444-505 943-1008(1025)
47 1kqf_B FDH-N beta S, formate d 98.4 1.4E-07 4.7E-12 96.4 3.9 58 446-503 92-152 (294)
48 1ti6_B Pyrogallol hydroxytrans 98.3 2.9E-07 1E-11 92.9 4.6 57 446-503 60-118 (274)
49 1irx_A Lysyl-tRNA synthetase; 98.3 1.1E-07 3.6E-12 104.9 0.9 97 48-175 223-325 (523)
50 3mm5_B Sulfite reductase, diss 98.3 1.4E-07 4.7E-12 99.3 1.4 57 446-502 199-259 (366)
51 2wdq_B Succinate dehydrogenase 98.2 1.8E-07 6.2E-12 92.4 -0.0 95 404-499 96-221 (238)
52 1h0h_B Formate dehydrogenase ( 98.1 6.5E-07 2.2E-11 87.1 2.3 58 446-503 64-129 (214)
53 3or1_B Sulfite reductase beta; 98.1 6.2E-07 2.1E-11 94.9 1.9 57 446-502 210-276 (386)
54 1kf6_B Fumarate reductase iron 98.1 1.7E-07 5.9E-12 92.9 -2.9 94 404-497 90-217 (243)
55 2gmh_A Electron transfer flavo 97.9 4.6E-06 1.6E-10 93.1 4.0 55 449-503 507-572 (584)
56 3mm5_A Sulfite reductase, diss 97.9 2.7E-06 9.3E-11 90.5 1.9 53 447-500 243-302 (418)
57 2pa8_D DNA-directed RNA polyme 97.8 4.9E-06 1.7E-10 83.6 2.6 49 455-504 174-222 (265)
58 3j16_B RLI1P; ribosome recycli 97.5 4.3E-05 1.5E-09 85.4 4.1 62 444-505 6-76 (608)
59 2bs2_B Quinol-fumarate reducta 97.5 1.1E-05 3.9E-10 79.7 -0.7 49 449-497 146-221 (241)
60 3or1_A Sulfite reductase alpha 97.5 2.2E-05 7.4E-10 83.7 1.2 41 458-499 278-318 (437)
61 7fd1_A FD1, protein (7-Fe ferr 97.4 3.6E-05 1.2E-09 65.9 1.6 53 385-473 6-58 (106)
62 1li5_A Cysrs, cysteinyl-tRNA s 97.4 0.00018 6.2E-09 77.8 7.0 127 27-178 179-314 (461)
63 1iq0_A Arginyl-tRNA synthetase 97.4 4.5E-05 1.5E-09 85.1 2.3 93 64-178 345-467 (592)
64 3c8z_A Cysteinyl-tRNA syntheta 97.4 0.00019 6.5E-09 76.5 6.9 131 25-183 201-344 (414)
65 3fnr_A Arginyl-tRNA synthetase 97.4 4.9E-05 1.7E-09 82.1 1.9 114 27-175 206-330 (464)
66 2h88_B Succinate dehydrogenase 97.3 4.6E-05 1.6E-09 75.9 0.6 50 448-497 152-228 (252)
67 2fdn_A Ferredoxin; electron tr 97.3 0.00015 5.1E-09 54.0 3.2 25 447-471 30-54 (55)
68 2v2k_A Ferredoxin; iron, trans 97.2 3.6E-05 1.2E-09 65.7 -0.8 59 447-505 32-91 (105)
69 3cf4_A Acetyl-COA decarboxylas 97.2 3.3E-05 1.1E-09 88.7 -1.9 54 448-501 411-472 (807)
70 4djd_C C/Fe-SP, corrinoid/iron 97.2 0.00023 7.9E-09 75.5 4.6 54 380-433 10-63 (446)
71 2csx_A Methionyl-tRNA syntheta 97.0 0.00061 2.1E-08 74.3 6.6 133 25-179 200-345 (497)
72 1bc6_A 7-Fe ferredoxin; electr 97.0 0.00035 1.2E-08 55.8 3.0 27 446-472 31-57 (77)
73 1rgv_A Ferredoxin; electron tr 97.0 0.00048 1.6E-08 55.5 3.6 27 447-473 30-62 (80)
74 3bk7_A ABC transporter ATP-bin 96.9 0.00036 1.2E-08 78.0 3.5 60 442-501 17-86 (607)
75 3eun_A Ferredoxin; electron tr 96.9 0.00048 1.7E-08 55.8 2.8 28 446-473 29-62 (82)
76 2fgo_A Ferredoxin; allochromat 96.8 0.00053 1.8E-08 55.5 2.8 27 447-473 30-62 (82)
77 3i9v_9 NADH-quinone oxidoreduc 96.8 0.00027 9.1E-09 66.1 1.1 28 446-473 90-117 (182)
78 2zvs_A Uncharacterized ferredo 96.7 0.00093 3.2E-08 54.5 3.6 27 447-473 30-63 (85)
79 1jnr_B Adenylylsulfate reducta 96.7 0.00041 1.4E-08 63.4 1.2 26 447-472 40-65 (150)
80 1h98_A Ferredoxin; electron tr 96.7 0.0004 1.4E-08 55.7 0.9 27 447-473 32-58 (78)
81 2h9a_A Carbon monoxide dehydro 96.6 0.00034 1.2E-08 74.8 0.4 54 380-433 10-63 (445)
82 3gyx_B Adenylylsulfate reducta 96.6 0.00048 1.6E-08 64.0 1.2 27 446-472 38-64 (166)
83 1rof_A Ferredoxin; electron tr 96.2 0.0031 1.1E-07 47.1 3.6 23 450-472 37-59 (60)
84 3mm5_B Sulfite reductase, diss 96.0 0.00079 2.7E-08 70.6 -0.9 29 444-472 231-259 (366)
85 1hfe_L Protein (Fe-only hydrog 95.9 0.0021 7.1E-08 68.6 1.4 22 450-471 62-83 (421)
86 3vr8_B Iron-sulfur subunit of 95.8 0.0021 7.3E-08 64.6 1.1 47 451-497 179-252 (282)
87 2dlc_X Tyrosyl-tRNA synthetase 95.5 0.0023 7.9E-08 67.6 0.2 64 51-120 169-234 (394)
88 1xer_A Ferredoxin; electron tr 95.5 0.0042 1.4E-07 52.3 1.5 26 447-472 76-101 (103)
89 3h99_A Methionyl-tRNA syntheta 95.4 0.019 6.5E-07 63.4 7.0 101 60-183 297-401 (560)
90 1dax_A Ferredoxin I; electron 95.4 0.0061 2.1E-07 46.4 2.0 26 477-503 4-29 (64)
91 1jb0_C Photosystem I iron-sulf 95.3 0.0065 2.2E-07 48.3 2.0 26 478-503 4-29 (80)
92 2cyb_A Tyrosyl-tRNA synthetase 95.2 0.0044 1.5E-07 63.8 0.7 64 49-118 155-219 (323)
93 1dwl_A Ferredoxin I; electron 95.1 0.0083 2.8E-07 44.5 2.0 23 449-471 36-58 (59)
94 3j16_B RLI1P; ribosome recycli 95.1 0.006 2E-07 68.1 1.7 30 443-472 44-73 (608)
95 1f2g_A Ferredoxin II; electron 95.1 0.0074 2.5E-07 44.9 1.6 24 448-471 32-57 (58)
96 3tqo_A Cysteinyl-tRNA syntheta 95.0 0.051 1.7E-06 58.4 8.5 137 14-177 171-316 (462)
97 1f7u_A Arginyl-tRNA synthetase 94.8 0.0071 2.4E-07 67.4 1.3 89 8-119 319-413 (607)
98 1iqz_A Ferredoxin; iron-sulfer 94.6 0.013 4.3E-07 47.1 2.1 25 477-502 4-28 (81)
99 3mm5_A Sulfite reductase, diss 94.4 0.0081 2.8E-07 63.8 0.5 31 445-475 277-307 (418)
100 2d5b_A Methionyl-tRNA syntheta 94.1 0.065 2.2E-06 58.2 7.0 93 64-178 251-346 (500)
101 1sj1_A Ferredoxin; thermostabi 93.7 0.027 9.1E-07 42.7 2.0 25 477-502 4-28 (66)
102 2gmh_A Electron transfer flavo 93.1 0.012 4.2E-07 65.3 -1.2 27 446-472 545-571 (584)
103 3or1_B Sulfite reductase beta; 93.1 0.035 1.2E-06 58.4 2.4 27 446-472 250-276 (386)
104 1gte_A Dihydropyrimidine dehyd 93.0 0.012 4.2E-07 69.6 -1.4 26 447-473 980-1006(1025)
105 2c42_A Pyruvate-ferredoxin oxi 92.2 0.068 2.3E-06 64.2 3.6 51 452-502 651-706 (1231)
106 1n3l_A Tyrosyl-tRNA synthetase 92.1 0.031 1.1E-06 58.5 0.4 58 57-120 171-229 (372)
107 3i9v_3 NADH-quinone oxidoreduc 92.0 0.037 1.3E-06 63.6 0.9 21 452-472 218-238 (783)
108 3sp1_A Cysteinyl-tRNA syntheta 91.2 0.26 8.8E-06 53.4 6.5 64 100-179 286-349 (501)
109 3or1_A Sulfite reductase alpha 90.5 0.097 3.3E-06 55.6 2.2 30 445-474 294-323 (437)
110 3c8y_A Iron hydrogenase 1; dit 90.3 0.087 3E-06 58.3 1.7 27 447-473 183-209 (574)
111 2x1l_A Methionyl-tRNA syntheta 90.1 0.28 9.7E-06 53.4 5.6 74 84-179 286-360 (524)
112 3bk7_A ABC transporter ATP-bin 88.3 0.14 5E-06 56.9 1.7 27 445-471 60-86 (607)
113 4dlp_A Aminoacyl-tRNA syntheta 85.4 1 3.5E-05 49.1 6.4 88 67-177 280-369 (536)
114 3kfl_A Methionyl-tRNA syntheta 82.7 1.8 6.2E-05 47.5 7.0 76 84-181 315-392 (564)
115 3cf4_A Acetyl-COA decarboxylas 81.5 0.3 1E-05 56.1 0.1 23 449-471 450-472 (807)
116 3u1f_A Methionyl-tRNA syntheta 80.8 2.2 7.5E-05 46.5 6.7 64 100-179 310-373 (542)
117 1rqg_A Methionyl-tRNA syntheta 79.8 1.8 6.2E-05 49.1 5.8 64 97-176 327-391 (722)
118 2pa8_D DNA-directed RNA polyme 77.2 0.65 2.2E-05 46.0 0.9 25 447-472 196-220 (265)
119 2wdq_B Succinate dehydrogenase 76.0 0.78 2.7E-05 44.4 1.1 21 450-470 202-222 (238)
120 1ile_A Ilers, isoleucyl-tRNA s 74.9 4 0.00014 47.0 6.9 69 100-184 577-646 (821)
121 2zue_A Arginyl-tRNA synthetase 74.3 1 3.4E-05 50.3 1.6 84 71-174 384-497 (629)
122 1wz2_A Leucyl-tRNA synthetase; 74.2 5.2 0.00018 46.9 7.7 62 100-177 637-698 (967)
123 1kf6_B Fumarate reductase iron 73.5 0.93 3.2E-05 44.0 1.0 19 450-468 200-218 (243)
124 1wkb_A Leucyl-tRNA synthetase; 72.6 4.9 0.00017 46.1 6.9 61 100-176 637-697 (810)
125 2bs2_B Quinol-fumarate reducta 72.2 0.57 2E-05 45.5 -0.9 21 480-500 147-167 (241)
126 2h88_B Succinate dehydrogenase 64.2 2 6.9E-05 42.0 1.1 19 450-468 211-229 (252)
127 2cya_A Tyrosyl-tRNA synthetase 60.9 2.5 8.5E-05 43.8 1.1 52 62-119 175-244 (364)
128 1ffy_A Isoleucyl-tRNA syntheta 52.9 18 0.00062 42.0 6.8 60 100-176 581-641 (917)
129 3vr8_B Iron-sulfur subunit of 50.7 3.8 0.00013 40.9 0.5 19 481-499 179-197 (282)
130 2yy5_A Tryptophanyl-tRNA synth 48.6 8.2 0.00028 39.6 2.6 54 61-120 144-209 (348)
131 2ip1_A Tryptophanyl-tRNA synth 42.4 16 0.00056 38.6 3.8 64 51-120 231-302 (432)
132 1yi8_B Tryptophanyl-tRNA synth 42.3 13 0.00044 38.2 2.9 57 62-120 160-222 (351)
133 1gax_A Valrs, valyl-tRNA synth 39.0 32 0.0011 39.7 5.8 68 100-184 514-582 (862)
134 2g36_A Tryptophanyl-tRNA synth 36.7 9.4 0.00032 39.0 0.8 56 62-119 151-211 (340)
135 2el7_A Tryptophanyl-tRNA synth 31.9 16 0.00054 37.3 1.6 53 62-120 139-202 (337)
136 1i6k_A TRPRS, tryptophanyl-tRN 29.2 17 0.00057 37.0 1.2 60 61-120 134-199 (328)
137 1h3f_A Tyrosyl-tRNA synthetase 28.8 18 0.00062 38.2 1.5 51 63-119 186-238 (432)
138 2dtg_E Insulin receptor; IR ec 27.7 11 0.00038 43.5 -0.5 19 452-470 223-247 (897)
139 2zp1_A Tyrosyl-tRNA synthetase 27.3 31 0.0011 34.7 2.8 46 63-118 162-209 (314)
140 1igr_A Insulin-like growth fac 26.7 15 0.0005 39.5 0.2 18 453-470 217-240 (478)
141 3hv0_A Tryptophanyl-tRNA synth 25.2 26 0.0009 36.4 1.9 50 64-119 219-272 (393)
142 3jxe_A Tryptophanyl-tRNA synth 23.7 44 0.0015 34.7 3.2 50 65-120 208-260 (392)
143 1r6t_A Tryptophanyl-tRNA synth 23.2 24 0.00083 37.7 1.1 64 51-120 285-356 (477)
144 2pid_A Tyrosyl-tRNA synthetase 22.1 43 0.0015 34.3 2.8 50 64-119 210-260 (356)
145 3tze_A Tryptophanyl-tRNA synth 21.7 48 0.0016 34.6 3.0 49 64-118 243-294 (406)
146 2jan_A Tyrosyl-tRNA synthetase 21.6 1.3E+02 0.0044 31.6 6.4 51 64-120 187-238 (432)
147 4arc_A Leucine--tRNA ligase; l 21.5 1.6E+02 0.0054 33.9 7.6 50 113-178 639-688 (880)
148 1t3q_A Quinoline 2-oxidoreduct 21.5 23 0.00078 32.2 0.4 18 449-466 139-156 (168)
149 3i05_A Tryptophanyl-tRNA synth 20.6 29 0.00098 36.2 1.0 48 65-118 225-275 (395)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=2.3e-93 Score=776.02 Aligned_cols=361 Identities=50% Similarity=0.872 Sum_probs=340.7
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|++++|++|||+|+||.++|.+|+|||+||+...+||++|++|++||||||||+||||+|||||||||+||++|+++
T Consensus 160 m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~ 239 (553)
T 1qtq_A 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRL 239 (553)
T ss_dssp HHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHH
T ss_pred HhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCC-CCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRP-FPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~-~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.|||++||| . .|.||||+|||++|+|||||++.++|++|.|+||||||++||++||++||+|+||++|+.++
T Consensus 240 q~~l~~alg~------~~~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~l 313 (553)
T 1qtq_A 240 YDWVLDNITI------PVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRI 313 (553)
T ss_dssp HHHHHHTSCC------SCCCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCC------CCCCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHc
Confidence 9999999999 7 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEe
Q psy9414 160 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIE 238 (582)
Q Consensus 160 G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~ 238 (582)
|+|+++..+++..|+.++|..|+++++|.|||+||+||.+.|+| +..+.+++|+ ||++ ++|+|.++|++.||||
T Consensus 314 G~s~~~~~~e~~~le~~~~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~----~p~~~~~g~r~~~~~~~i~ie 388 (553)
T 1qtq_A 314 GVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPN----HPNKPEMGSRQVPFSGEIWID 388 (553)
T ss_dssp CCCSSCCCBCHHHHHHHHHHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEES----CSSCGGGCEEEEEECSEEEEE
T ss_pred CCCCCccccchhhHHHHHHhCcccccccccceeccceEEEEcCC-CceEEEEecC----CCCChHHhhhhHhhCceEEEE
Confidence 99999999999999999999999999999999999999999998 5567899999 9999 9999999999999999
Q ss_pred cCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcceEEEeecC
Q psy9414 239 RDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISK 318 (582)
Q Consensus 239 ~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k~~I~Wv~~ 318 (582)
++||++.++++||||+| |++||||++|+|+|+++++|++|+|++|+|+|++++++++. +..+|+|++|||||+
T Consensus 389 ~~Df~e~~~~~~~rl~~------g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~-~~~~k~k~~ihWv~~ 461 (553)
T 1qtq_A 389 RADFREEANKQYKRLVL------GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDP-ADGRKVKGVIHWVSA 461 (553)
T ss_dssp TTTEESSCCTTCCSEET------TSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC------------CEECCEES
T ss_pred HHHhhccCccccccCCC------CCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCC-ccccccCCEEEEeec
Confidence 99999999999999999 99999999999999999999999999999999999987642 223489999999999
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
.++++++||+||+||++++|+. +++|+++|||+|+.+..+++||++..++.+++|||||.|
T Consensus 462 ~~~~~~~~~~yd~L~~~~~p~~--~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~G 522 (553)
T 1qtq_A 462 AHALPVEIRLYDRLFSVPNPGA--ADDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREG 522 (553)
T ss_dssp TTCEEEEEEEECCSBSSSCGGG--STTGGGGBCTTSEEEEEEEECGGGGGCCTTCEEEETTTE
T ss_pred CCCEeEEEEecccccCCCCCCc--CcchhhhcCCcchhheeeEecHhHhhCCCCCEEEEEEee
Confidence 9999999999999999999985 478999999999999999999999999999999999994
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=1.7e-88 Score=765.57 Aligned_cols=356 Identities=43% Similarity=0.784 Sum_probs=338.7
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++|+|.+|++|||+|+||.++|.+|+|||+||++..+||++|++|++||||||||+||||+|||||||||+||++|+++
T Consensus 200 m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~ 279 (851)
T 2hz7_A 200 MKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAI 279 (851)
T ss_dssp HHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHH
T ss_pred HhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCC-CceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRPF-PKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~-p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.|||++||| .. |.||||+|||++|+|||||++.++|++|+|+||||||++||++||++||+|+||++|+.++
T Consensus 280 q~~l~~alG~------~~~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~l 353 (851)
T 2hz7_A 280 YDWLMEKLNF------DPRPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQI 353 (851)
T ss_dssp HHHHHHHTTC------SSCCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHcCC------CCCCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhc
Confidence 9999999999 75 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-----------------
Q psy9414 160 GVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY----------------- 222 (582)
Q Consensus 160 G~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~----------------- 222 (582)
|+|+++..+++..|+.++|++|+++++|+|||+||+||+|+|+|++. .+++|+ ||++
T Consensus 354 G~s~~~~~~e~~~le~~~r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~----~p~~~~~~~~~~~~~~~~~~~ 427 (851)
T 2hz7_A 354 GVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPY----WPHDVVRDSPDGLVGMPGGGR 427 (851)
T ss_dssp CCCSSCEEECHHHHHHHHHHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEES----SCHHHHHTCTTSCEECSSSCE
T ss_pred CCCCCcccccHHHHHHHHHhcccccccccceEecceeEEEecCCCCe--EEEecC----Ccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998864 789999 9987
Q ss_pred ---CCCceEEeecceEEEecCcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCC
Q psy9414 223 ---KEKLRYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299 (582)
Q Consensus 223 ---~~G~r~i~~~~~i~i~~~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~ 299 (582)
++|+|+|+|+++||||++||+++++++||||++ |++||||++|+|+|+++++|++|+|++|+|+|.+
T Consensus 428 ~~~~~g~r~v~~~~~iyie~~Df~e~~~~~~~rl~~------g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~---- 497 (851)
T 2hz7_A 428 VAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTP------GGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLG---- 497 (851)
T ss_dssp ECGGGCEEEEEECSEEEEEGGGBCSSCCTTCCSBCT------TCEEEETTTEEEEEEEEEECTTSCEEEEEEEECC----
T ss_pred cCccCceEEEEEcCeEEEEHHHhhhcccccceecCC------CCEEEecCeEEEEEEEEEecCCCCEEEEEEEEcc----
Confidence 799999999999999999999999999999999 9999999999999999999999999999999953
Q ss_pred CCCCCCCCCcceEEEeecCCCCeeeEEEeccccccCCCCCcc--------------------------CCCcccccccCC
Q psy9414 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIV--------------------------NNKDFKLLINPN 353 (582)
Q Consensus 300 ~~~~~~~~k~k~~I~Wv~~~~~i~~~vr~Yd~L~~~~~p~~~--------------------------~~~d~~~~iNp~ 353 (582)
+++ |+|++|||||+.++++++||+||+||++++|++. .+++|+++|||+
T Consensus 498 ---~~~--k~k~~ihWv~~~~~~~~e~r~yd~Lf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~ 572 (851)
T 2hz7_A 498 ---EDA--KAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPD 572 (851)
T ss_dssp ---TTC--CCSCEECCEETTTCEEEEEEEECCSBSSSCTTCCC----------------------------CGGGGBCTT
T ss_pred ---cCC--ccCceEEEeecCCCeeEEEEecccccCCCCcccccccccccccccccccccccccccccccCccHHHhcCCc
Confidence 334 8889999999999999999999999999999751 035899999999
Q ss_pred ceEEEEEEEccccccccccccccccccccc
Q psy9414 354 SKKVISAYLEPNLKLIFPKKHAQFEQNLLP 383 (582)
Q Consensus 354 Sl~v~~~~vep~l~~~~~~d~~QfeR~glp 383 (582)
|+.+..+++||++.....+++|||||.|..
T Consensus 573 s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf 602 (851)
T 2hz7_A 573 SLRVLRGYVEPSVAGDPADTRYQFERQGYF 602 (851)
T ss_dssp SEEEEEEEECGGGGGSCTTCEEEETTTEEE
T ss_pred cceeeeeEEchhhhhCCCCCEEEEEEeeEE
Confidence 999999999999999999999999999643
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2e-77 Score=651.00 Aligned_cols=309 Identities=24% Similarity=0.379 Sum_probs=274.9
Q ss_pred CCCCCCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccccChHH
Q psy9414 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 1 M~~g~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
|++| .+|++|||+|+||.++|++|+|||+||+...+||++|++|++||||||||+||||+|||||||||.||++|+++
T Consensus 225 m~~G--~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~ 302 (553)
T 3aii_A 225 MFEM--KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREK 302 (553)
T ss_dssp GGGS--CTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHH
T ss_pred HhcC--CcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHH
Confidence 5677 67889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhc
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIG 160 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G 160 (582)
|.||+++||| ..|.|+||++|+++|+|||||+++++|++|.|+||||||++||++||++||+|+||++|+.++|
T Consensus 303 Q~~l~~alG~------~~P~y~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 303 QEYLYRHLGW------EPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp HHHHHHHHTC------CCCEEECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCC------CCCeEEEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccHHHHHHHHHHhhhccCCceeeeecceEEEEEccCCCceEEEEccCCcCCCCcc-CCCceEEeecceEEEec
Q psy9414 161 VSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQY-KEKLRYFPISKILWIER 239 (582)
Q Consensus 161 ~s~~~~~~~~~~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n~~~~~~~~~~~p~~~~~hp~~-~~G~r~i~~~~~i~i~~ 239 (582)
+|+++..|+++.|++.||++|++.|+|+|||++|++|+|+|+|.. +.+++|+ ||++ ++|+|+++|+++||||+
T Consensus 377 ~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~~p~kv~i~n~~~~--~~~~~p~----hp~~~~~G~r~v~~~~~i~ie~ 450 (553)
T 3aii_A 377 VKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVGLPGP--VRVERPL----HPDHPEIGNRVLELRGEVYLPG 450 (553)
T ss_dssp TCSSCBCCCHHHHHHHHHHHHTTTCEEECEEESEEEEEEETCCSC--EEEEEES----CTTCGGGCEEEEEESSEEEEEC
T ss_pred CCCccccccHHHHHHHHHHHhhccChhhhhccCcEEEEEeCCCCc--eEEEecC----CCCCCcCccEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999832 5789999 9999 99999999999999999
Q ss_pred CcccccccccccccCCCCCCCCCceEEEeecEEEEEeeEEecCCCCEEEEEEEEeCCCCCCCCCCCCCCcc-eEEEeecC
Q psy9414 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVK-GNIHWISK 318 (582)
Q Consensus 240 ~D~~~~~~~~f~~l~~~~~~~~g~~v~L~~~~~i~~~~~~~d~~g~v~~~~~~~~~~~~~~~~~~~~~k~k-~~I~Wv~~ 318 (582)
+||+ + ++||||++|+|+|+++. |+|++++++ +++ |+| ++|||||+
T Consensus 451 ~D~~-----------------~-~~vrL~~~~~i~~~~~~-----------~~~~~~~~~---~~~--k~k~~~i~Wv~~ 496 (553)
T 3aii_A 451 DDLG-----------------E-GPLRLIDAVNVIYSGGE-----------LRYHSEGIE---EAR--ELGASMIHWVPA 496 (553)
T ss_dssp TTCC-----------------S-EEEEETTTEEEEEETTE-----------EEEEECSHH---HHH--HHTCEEECCEEG
T ss_pred ccCC-----------------c-CceeecCEEEEEEEEEE-----------EEEeCCchh---hcc--cCCCCEEEEccC
Confidence 9995 2 68999999999987642 788887652 333 777 89999999
Q ss_pred CCCeeeEEEeccccccCCCCCccCCCcccccccCCceEEEEEEEccccccccccccccccccc
Q psy9414 319 SHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQNL 381 (582)
Q Consensus 319 ~~~i~~~vr~Yd~L~~~~~p~~~~~~d~~~~iNp~Sl~v~~~~vep~l~~~~~~d~~QfeR~g 381 (582)
.++++++++. |++ + +..+++||++..++.++.|||||.|
T Consensus 497 ~~~~~~~~~~---------~~~---~------------~~~~~~e~~~~~~~~~~~~QfeR~G 535 (553)
T 3aii_A 497 ESALEAEVIM---------PDA---S------------RVRGVIEADASELEVDDVVQLERFG 535 (553)
T ss_dssp GGCEEEEEEC---------TTS---C------------EEEEEECGGGGGCCTTCEEEETTTE
T ss_pred CCceEEEEEC---------CCC---c------------EEEEEEchhHhcCCCCCEEEEEEeE
Confidence 8899999983 322 1 5678999999999999999999995
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.97 E-value=2.9e-33 Score=307.07 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=145.3
Q ss_pred CCCCCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeee----ecccccccccccccCCCcEEecCcccccChHH
Q psy9414 5 EFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCI----YPMYDYAHPISDAIENITHSICTLEFQDHRPF 80 (582)
Q Consensus 5 ~~~~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~----~P~Y~fa~~vdD~~~githvir~~e~~~~~~~ 80 (582)
..+++.+|+|+|+++. .+..++|+|.+|+....|...||.+++ |||||||||||||+|||||||||+||++|||+
T Consensus 167 ~~~~~~~~~R~k~~~~-~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~ 245 (512)
T 4gri_A 167 LIKKIKPVVRFKIPLE-GDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPL 245 (512)
T ss_dssp HHTTCCCEEEECCCSS-CEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHH
T ss_pred hhhhccceeeeccccc-CCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHH
Confidence 4567889999999985 478899999999998888888986664 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceeEee-cccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHh
Q psy9414 81 YEWILNKIDKTNFIKRPFPKQYEFS-RLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRI 159 (582)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~p~~~~~~-~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~ 159 (582)
|.|||++||| ..|.|.|++ .++.+|+|||||+ ...+|..||+.||.|+||.||+.+|
T Consensus 246 q~~l~~alg~------~~P~y~H~pli~~~~g~kLSKR~----------------~~~~v~~~~~~G~lPeAl~NyLalL 303 (512)
T 4gri_A 246 HVLLYKAFKW------KPPIYCHLPMVMGNDGQKLSKRH----------------GSTALRQFIEDGYLPEAIINYVTLL 303 (512)
T ss_dssp HHHHHHHHTC------CCCEEEEECCCBCTTSSBCCTTT----------------SCCBHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHcCC------CCCeEEecchhccccccccCccc----------------ccccHHHHHHcCCChHHHHHHHHHh
Confidence 9999999999 999999999 5678899999999 3557899999999999999999999
Q ss_pred ccc-----------------------CCCCcccHHHHHHHHHHhhhccCCc
Q psy9414 160 GVS-----------------------KSDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 160 G~s-----------------------~~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
||| ++++.||+++|+|+|+++|......
T Consensus 304 Gws~~~~~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~ 354 (512)
T 4gri_A 304 GWSYDDKREFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFNSYYIREKKDE 354 (512)
T ss_dssp SBCSSSSCCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCcccchhhhHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHhCCHH
Confidence 964 6889999999999999999887543
No 5
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.97 E-value=1.9e-32 Score=295.90 Aligned_cols=144 Identities=25% Similarity=0.300 Sum_probs=130.3
Q ss_pred CceEEEEEE--------------eccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccc
Q psy9414 9 GAHVLRVKI--------------NMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEF 74 (582)
Q Consensus 9 g~~~~r~k~--------------d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~ 74 (582)
...++|+|+ +|.++|..|+|+||+|+++ +||||||+|||||+|||||||||+||
T Consensus 163 ~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG------------~ptY~lA~vVDD~~mgIThViRG~D~ 230 (490)
T 4g6z_A 163 VAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDG------------TPMYNFCVVVDDLDMGITHVIRGDDH 230 (490)
T ss_dssp CCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCceEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCC------------CccchhHHHHHHHhcCCCEEEecccc
Confidence 356888875 5778899999999999987 59999999999999999999999999
Q ss_pred ccChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHH
Q psy9414 75 QDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 153 (582)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~ 153 (582)
++|||+|.|||++||| ..|.|.|.+. ++.+|+|||||+ ...||.+||++||+|+||+
T Consensus 231 l~~tprq~~l~~aLG~------~~P~f~HlpLi~~~~g~KLSKR~----------------g~~sl~~~r~~G~~peal~ 288 (490)
T 4g6z_A 231 VNNTPRQINILRALGG------EVPVYAHLPTVLNEQGEKMSKRH----------------GAMSVMGYRDAGYLPEAVL 288 (490)
T ss_dssp GGGHHHHHHHHHHTTC------CCCEEEEECCEECTTSSBCCTTT----------------TCCBHHHHHHTTCCHHHHH
T ss_pred ccChHHHHHHHHHcCC------CCCeEEEecceeCCCCCcccCCC----------------CCcCHHHHHHCCCCHHHHH
Confidence 9999999999999999 8999988884 688899999998 3579999999999999999
Q ss_pred HHHHHhccc----------------------CCCCcccHHHHHHHHHHhhhccCC
Q psy9414 154 LFCKRIGVS----------------------KSDSWINIEILEQALRDDLDIKAP 186 (582)
Q Consensus 154 ~~~~~~G~s----------------------~~~~~~~~~~l~~~~~~~l~~~~~ 186 (582)
||+..+||| ++++.||++||+|+|+++|.....
T Consensus 289 n~l~~lG~s~~~~e~~s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~ 343 (490)
T 4g6z_A 289 NYLARLGWSHGDAEIFTREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADD 343 (490)
T ss_dssp HHHHTSSBCCTTCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhCCCCCCccccCHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCH
Confidence 999999965 567789999999999999987654
No 6
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.96 E-value=3.5e-31 Score=288.03 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=127.4
Q ss_pred ceEEEEEEe--------------ccCCCCCC-CCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccc
Q psy9414 10 AHVLRVKIN--------------MKSKNINM-RDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEF 74 (582)
Q Consensus 10 ~~~~r~k~d--------------~~~~n~~~-~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~ 74 (582)
..|+|+|++ |.+++..+ +|+|++|.+.. | |+++|||||||+||||+|||||||||+||
T Consensus 141 ~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~--p-----~~G~PtY~la~vvDD~~~gIthviRG~D~ 213 (492)
T 2cfo_A 141 TPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAPR--G-----EIGYPLYNLVVVVDDIAMGITDVIRGEDH 213 (492)
T ss_dssp CCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCCT--T-----SCCCBCHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred CceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecCC--C-----CCCceeehhhhhhhhhcCCCCeEEEchhh
Confidence 579999986 45677889 99999999863 3 45689999999999999999999999999
Q ss_pred ccChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHH
Q psy9414 75 QDHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 153 (582)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~ 153 (582)
++|||+|.|||++||| ..|.|.|.+. ||.+|+|||||++ ..+|.+||++||+|+||+
T Consensus 214 ~~~t~~q~~l~~alg~------~~P~~~H~plil~~~g~KLSKr~g----------------~~~l~~~r~~G~~peal~ 271 (492)
T 2cfo_A 214 IGNTPKQILLYEALGA------TPPNFAHTPLILNSTGQKLSKRDG----------------VTSISDFRAMGYLAPALA 271 (492)
T ss_dssp TTHHHHHHHHHHHTTC------CCCEEEEECCEECSSSSBCCTTSS----------------CCBHHHHHHTTCCHHHHH
T ss_pred hhCHHHHHHHHHHcCC------CCceEEEeeeEECCCCCEecccCC----------------cccHHHHHHCCCCHHHHH
Confidence 9999999999999999 8999999996 7999999999994 346899999999999999
Q ss_pred HHHHHhcccC------------------------CCCcccHHHHHHHHHHhhhccCC
Q psy9414 154 LFCKRIGVSK------------------------SDSWINIEILEQALRDDLDIKAP 186 (582)
Q Consensus 154 ~~~~~~G~s~------------------------~~~~~~~~~l~~~~~~~l~~~~~ 186 (582)
+|+..+|+|. +.+.||+++|+|+|+++|...+.
T Consensus 272 ~~l~~lG~s~~~~~~e~~~~~e~i~~f~~~~i~~~~~~~d~~kl~~~N~~~i~~~~~ 328 (492)
T 2cfo_A 272 NYMTLLGWSPPEGVGELFTLDLAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEP 328 (492)
T ss_dssp HHHHHTTBCCCTTTCSCCCHHHHHHHCCSTTBCSSCEECCHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhCCCCCCccccccCHHHHHhhcChhhcCccccccCHHHHHHHHHHHHhcCCH
Confidence 9999999985 12356777777777777766543
No 7
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.96 E-value=6.7e-31 Score=284.18 Aligned_cols=154 Identities=23% Similarity=0.345 Sum_probs=131.6
Q ss_pred ceEEEEEEe--------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccc
Q psy9414 10 AHVLRVKIN--------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQ 75 (582)
Q Consensus 10 ~~~~r~k~d--------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~ 75 (582)
.+|+|+|++ +.++|..++|+|++|+++ |||||||||||||+|||||||||+||+
T Consensus 143 ~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~dg------------~PtY~~a~vvDD~~~githvirG~D~~ 210 (468)
T 1j09_A 143 PHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDG------------YPTYHLANVVDDHLMGVTDVIRAEEWL 210 (468)
T ss_dssp CCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecCC------------CeeehhHHHHHHHHCCCCeEEEChhhh
Confidence 589999997 778888999999999985 799999999999999999999999999
Q ss_pred cChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHH
Q psy9414 76 DHRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 154 (582)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~ 154 (582)
+|+++|.||+++||| ..|.+.|++. +|.+|+|||||++ ..+|.+||++||+|+||+|
T Consensus 211 ~~t~~q~~l~~alg~------~~p~~~h~~li~~~~g~klSKR~g----------------~~~l~~~~~~G~~peal~~ 268 (468)
T 1j09_A 211 VSTPIHVLLYRAFGW------EAPRFYHMPLLRNPDKTKISKRKS----------------HTSLDWYKAEGFLPEALRN 268 (468)
T ss_dssp GGHHHHHHHHHHHTC------CCCEEEEECCCBCTTSCBCCTTTS----------------CCBHHHHHHTTCCHHHHHH
T ss_pred hhHHHHHHHHHHcCC------CCCeEEEeeeeeCCCCCccccccc----------------hhhHHHHHHCCCCHHHHHH
Confidence 999999999999999 8898888885 6889999999994 3369999999999999999
Q ss_pred HHHHhcccCCC--CcccHH-HHHHHHHHhhhccCCceeeeecceEEEEEc
Q psy9414 155 FCKRIGVSKSD--SWINIE-ILEQALRDDLDIKAPRIMAVLNPIKLIISN 201 (582)
Q Consensus 155 ~~~~~G~s~~~--~~~~~~-~l~~~~~~~l~~~~~r~~~v~~p~~~~i~n 201 (582)
|+..+|+|..+ ..++++ .+++++.+.|.+. .+|.||.||.+.|
T Consensus 269 ~l~~lG~~~~~~~~~~~~~el~~~f~~~~~~~~----~~~~d~~kl~~~N 314 (468)
T 1j09_A 269 YLCLMGFSMPDGREIFTLEEFIQAFTWERVSLG----GPVFDLEKLRWMN 314 (468)
T ss_dssp HHHHHSCCCTTCCSCCCHHHHHHHCCGGGCCCS----CCBCCHHHHHHHH
T ss_pred HHHHhccCCcccccCCCHHHHHhhCChhhcCcc----ccccChHHhhhhc
Confidence 99999998654 356663 4555555554443 4667888887776
No 8
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.96 E-value=2.6e-30 Score=280.72 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=127.0
Q ss_pred ceEEEEEEe-------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccccc
Q psy9414 10 AHVLRVKIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQD 76 (582)
Q Consensus 10 ~~~~r~k~d-------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~ 76 (582)
..|+|+|++ +..++..++|+||+|.++ +||||||||||||+|||||||||+||++
T Consensus 153 ~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg------------~ptY~lA~vVDD~~mgithviRG~D~~~ 220 (498)
T 2ja2_A 153 QPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASG------------DPLYTLVNPCDDALMKITHVLRGEDLLP 220 (498)
T ss_dssp CCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CceEEEECCCCceEEEecccceEeecccccCcceeEccCC------------CcchhhHHHHHhhhcCCCEEEEChhhhh
Confidence 459999996 556677778888888775 7999999999999999999999999999
Q ss_pred ChHHHHHHHHHc-----CCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHH
Q psy9414 77 HRPFYEWILNKI-----DKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPE 150 (582)
Q Consensus 77 ~~~~~~~l~~~l-----~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ 150 (582)
|||+|.|||++| || ..|.|.|++. +|.+|+|||||++. .||.+||++||+|+
T Consensus 221 ~t~~q~~l~~aL~~~g~g~------~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~pe 278 (498)
T 2ja2_A 221 STPRQLALHQALIRIGVAE------RIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPE 278 (498)
T ss_dssp GHHHHHHHHHHHHHTTSCC------CCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHH
T ss_pred ccHHHHHHHHHHHhhcCCC------CCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHH
Confidence 999999999999 99 8899998885 68899999999953 37999999999999
Q ss_pred HHHHHHHHhcccC-----------------------CCCcccHHHHHHHHHHhhhccCCc
Q psy9414 151 SIKLFCKRIGVSK-----------------------SDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 151 ai~~~~~~~G~s~-----------------------~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
||++|+..+|||. +++.||+++|+|+|+++|...++.
T Consensus 279 Al~~~l~~lG~s~~~~~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~ 338 (498)
T 2ja2_A 279 GLLNYLALLGWSIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVG 338 (498)
T ss_dssp HHHHHHHTSSCCSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHhCCCCCcccccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHH
Confidence 9999999999874 345789999999999999887654
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.96 E-value=3.7e-30 Score=279.47 Aligned_cols=143 Identities=18% Similarity=0.219 Sum_probs=125.9
Q ss_pred ceEEEEEEe-------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccccc
Q psy9414 10 AHVLRVKIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQD 76 (582)
Q Consensus 10 ~~~~r~k~d-------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~ 76 (582)
.+++|+|++ +.+++..++|+|++|.++ +||||||++||||+|||||||||+||++
T Consensus 156 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~DG------------~PtY~lA~vVDD~~mgIThViRG~D~l~ 223 (488)
T 3afh_A 156 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDHLS 223 (488)
T ss_dssp CEEEEECCCSSEEEEEETTTEEEEEEGGGSCCEEEECTTS------------CBCHHHHHHHHHHHTTCSEEEEEGGGGG
T ss_pred CceEEEECCCCceeEEeccceeEeecCCCCCCeEEEecCC------------CeehhhHHHHHHHhcCCCEEEEchhhhh
Confidence 679999987 566677889999999985 6999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHH
Q psy9414 77 HRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 155 (582)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~ 155 (582)
|||+|.|||++||| ..|.|.|++. +|.+|+|||||++ ..+|.+||++||+|+||+||
T Consensus 224 ~tp~q~~l~~aLG~------~~P~f~H~pli~~~~g~KLSKR~g----------------~~~l~~~r~~G~~peal~n~ 281 (488)
T 3afh_A 224 NTPKQLMIYEAFGW------EAPVFMHIPLILGSDRTPLSKRHG----------------ATSVEHFRREGILSRALMNY 281 (488)
T ss_dssp GHHHHHHHHHHHTC------CCCEEEEECCEECTTSSBCCTTTS----------------CCBHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHcCC------CCCeEEEEeeeeCCCCCcccCcCC----------------cccHHHHHHCCCCHHHHHHH
Confidence 99999999999999 8899999985 4899999999994 34699999999999999999
Q ss_pred HHHhcccC----------------------CCCcccHHHHHHHHHHhhhccCC
Q psy9414 156 CKRIGVSK----------------------SDSWINIEILEQALRDDLDIKAP 186 (582)
Q Consensus 156 ~~~~G~s~----------------------~~~~~~~~~l~~~~~~~l~~~~~ 186 (582)
+..+|+|. +.+.||+++|+|+|+++|...++
T Consensus 282 l~~lG~s~~~~e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~ 334 (488)
T 3afh_A 282 LALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDL 334 (488)
T ss_dssp HHHTTCCCSSCSCCCHHHHGGGCCGGGSCSSCEECCHHHHHHHHHHHHHHSCH
T ss_pred HHHhCCCCcccccCCHHHHHhhCChhhcCccccccChHHhhhccHHHHhcCCH
Confidence 99999874 33567777888888887777644
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.95 E-value=4.1e-29 Score=277.05 Aligned_cols=144 Identities=18% Similarity=0.218 Sum_probs=129.5
Q ss_pred ceEEEEEEe-------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccccc
Q psy9414 10 AHVLRVKIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQD 76 (582)
Q Consensus 10 ~~~~r~k~d-------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~ 76 (582)
++++|+|++ +.+++..++|+|++|.++ +||||||++||||+|||||||||+||++
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~dg------------~ptY~~a~vvDD~~~githvirG~D~~~ 327 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------------FPTYNFAVVVDDHLMRISHVFRGEDHLS 327 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECTTS------------CCCHHHHHHHHHHHTTCSBCCEEGGGGG
T ss_pred CceEEEECCCCCceeeecccceeeeccccCCCeEEEcCCC------------CeehhhHHHHHHHhcCCCeEEEchhhHh
Confidence 679999997 677888899999999885 6999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHH
Q psy9414 77 HRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 155 (582)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~ 155 (582)
|||+|.||+++||| ..|.|.|++. +|.+|+|||||++ ..+|.+||++||+|+||++|
T Consensus 328 ~t~~q~~l~~alg~------~~P~~~hlpli~~~~g~KLSKR~g----------------~~~l~~~~~~G~~peal~~~ 385 (592)
T 3al0_C 328 NTPKQLMIYEAFGW------EAPVFMHIPLILGSDRTPLSKRHG----------------ATSVEHFRREGILSRALMNY 385 (592)
T ss_dssp GHHHHHHHHTTTTC------CCCBCCEECCCBCTTSSBCCTTTC----------------SSBHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCC------CCCeEEEeeeeeCCCCCcccccCC----------------cccHHHHHHCCCCHHHHHHH
Confidence 99999999999999 8899999985 4889999999994 34699999999999999999
Q ss_pred HHHhcccC----------------------CCCcccHHHHHHHHHHhhhccCCc
Q psy9414 156 CKRIGVSK----------------------SDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 156 ~~~~G~s~----------------------~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
+..+|||. +.+.||+++|+|+|+++|...+..
T Consensus 386 l~~lG~s~~~~e~~s~~e~i~~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~ 439 (592)
T 3al0_C 386 LALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLE 439 (592)
T ss_dssp HTTTTBCCCSCSCCCTTTTGGGCCTTSBCSSCCBCCHHHHHHHHHHHHTTSCHH
T ss_pred HHHhCCCCcccccCCHHHHHhhCChhhcCcccceeCHHHHhhhhHHHhhcCCHH
Confidence 99999873 345789999999999999876543
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.94 E-value=4e-28 Score=263.81 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=126.6
Q ss_pred ceEEEEEEe-------------ccCCCCCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCccccc
Q psy9414 10 AHVLRVKIN-------------MKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQD 76 (582)
Q Consensus 10 ~~~~r~k~d-------------~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~~ 76 (582)
+.|+|+|++ +.+++..++|+|++|+++ +||||||++||||+|||||||||.||++
T Consensus 163 ~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG------------~ptY~~a~vvDD~~~githvirG~D~~~ 230 (481)
T 2o5r_A 163 RPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNG------------LPTYNFACVVDDMLMEITHVIRGDDHLS 230 (481)
T ss_dssp CCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTS------------CBCHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred cceEEEEcCCCceEEEecccceeEeccccCCCeEEEccCC------------CcchhhHHHHHHHhCCCCeEEEChhHHH
Confidence 579999975 556788999999999986 6999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCCCCCCCCCCceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHH
Q psy9414 77 HRPFYEWILNKIDKTNFIKRPFPKQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLF 155 (582)
Q Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~ 155 (582)
|+++|.|++++||| ..|.+.|++. |+.+|+|||||++ ..+|.+||++||+|+||++|
T Consensus 231 ~t~~q~~l~~aLG~------~~p~~~H~plil~~~G~KLSKR~g----------------~~~l~~~~~~G~~peal~~~ 288 (481)
T 2o5r_A 231 NTLRQLALYEAFEK------APPVFAHVSTILGPDGKKLSKRHG----------------ATSVEAFRDMGYLPEALVNY 288 (481)
T ss_dssp HHHHHHHHHHHTTC------CCCEEEEECCEECTTSSBCCGGGS----------------CCBHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHcCC------CCCeEEEEeeEECCCCCcccCcCC----------------cccHHHHHHCCCCHHHHHHH
Confidence 99999999999999 8899999985 7889999999994 33789999999999999999
Q ss_pred HHHhcccC-----------------------CCCcccHHHHHHHHHHhhhccCCc
Q psy9414 156 CKRIGVSK-----------------------SDSWINIEILEQALRDDLDIKAPR 187 (582)
Q Consensus 156 ~~~~G~s~-----------------------~~~~~~~~~l~~~~~~~l~~~~~r 187 (582)
+..+|++. +++.||+++|+++|.++|...++.
T Consensus 289 l~~lG~s~~~~~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~ 343 (481)
T 2o5r_A 289 LALLGWSHPEGKELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIE 343 (481)
T ss_dssp HHTSSBCCTTCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHH
T ss_pred HHHhCCCCCcccccCCHHHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHH
Confidence 99999875 334678888888888887776543
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.86 E-value=2.1e-23 Score=213.50 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=89.9
Q ss_pred ceEEEEEEec-------------cCCC-CCCCCcEEEEecCCCccccCCeeeeecccccccccccccCCCcEEecCcccc
Q psy9414 10 AHVLRVKINM-------------KSKN-INMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQ 75 (582)
Q Consensus 10 ~~~~r~k~d~-------------~~~n-~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y~fa~~vdD~~~githvir~~e~~ 75 (582)
..++|+|++- ..++ ..++|+|++|.++ +|||||||+|||++|||||||||.||+
T Consensus 128 ~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~dG------------~PtY~la~vvdD~~~giThvIrG~D~l 195 (298)
T 1nzj_A 128 NAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDG------------LFAYNLAVVVDDHFQGVTEIVRGADLI 195 (298)
T ss_dssp TCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEECTTS------------CBCHHHHHHHHHHHTTCCEEEEEGGGH
T ss_pred CCcEEEecCCcccceehhhCcccccCcccCCCCEEEECCCC------------CEeeeeeeeeEHHhcCCCEEEeCcccc
Confidence 4689998762 1222 4789999999875 699999999999999999999999999
Q ss_pred cChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHH
Q psy9414 76 DHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKL 154 (582)
Q Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~ 154 (582)
.|+++|.+||++||| ..|.|+|++.| |.+|+|||||++...|++. ||+. ++.+
T Consensus 196 ~~t~~q~~l~~alG~------~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~------~~~~--------------~~~~ 249 (298)
T 1nzj_A 196 EPTVRQISLYQLFGW------KVPDYIHLPLALNPQGAKLSKQNHAPALPKG------DPRP--------------VLIA 249 (298)
T ss_dssp HHHHHHHHHHHHHTC------CCCEEEEECBCCC-------------CCCSS------CCHH--------------HHHH
T ss_pred ccHHHHHHHHHHcCC------CCCeEEEeeeeECCCCCcccccCCccChhcC------CccH--------------HHHH
Confidence 999999999999999 89999999976 9999999999998877652 4443 3566
Q ss_pred HHHHhcccCCC--CcccHHH
Q psy9414 155 FCKRIGVSKSD--SWINIEI 172 (582)
Q Consensus 155 ~~~~~G~s~~~--~~~~~~~ 172 (582)
++..+|++... ..++.+.
T Consensus 250 ~l~~lG~~~~~~~~~~~~~~ 269 (298)
T 1nzj_A 250 ALQFLGQQAEAHWQDFSVEQ 269 (298)
T ss_dssp HHHHTTCCCCSCGGGSCHHH
T ss_pred HHHHcCCCCCcccccCCHHH
Confidence 77777776544 3567654
No 13
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.27 E-value=3e-12 Score=147.80 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=79.3
Q ss_pred hHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCcc-------------ccccc---cC-CCCCcccceeccccccccch
Q psy9414 397 QYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPII-------------PLNTI---YG-NEKSRCCAIIKENKCIGCTL 459 (582)
Q Consensus 397 ~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~-------------~~~~~---~~-~~~~~~~~~id~~~Ci~Cg~ 459 (582)
.+...+.+|+.+|.+|+.++.|.||.++..+|.... ++... .+ .....+.+.+|.++||+||+
T Consensus 107 ~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~~~~~~~p~i~~d~~~CI~C~~ 186 (783)
T 3i9v_3 107 MVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERCIHCKR 186 (783)
T ss_dssp HHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCCCSEEEETTEEECTTTCCCCCH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCCcccCCCccEEEchhhCCCccH
Confidence 456778899999999999999999999999998321 12110 00 11234567889999999999
Q ss_pred hhhcc----cccceecccccc-eeec----ccCCccccchhhcCccCceeeeec
Q psy9414 460 CIQSC----PVDAIIGAAKHM-HTIF----SKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 460 Cv~~C----P~~ai~~~~~~~-~~i~----~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
|+++| |.++|.+...+. ..+. ...|++||.|+++||++||+....
T Consensus 187 Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~ 240 (783)
T 3i9v_3 187 CVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTA 240 (783)
T ss_dssp HHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGG
T ss_pred HHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceecccc
Confidence 99999 556776543332 1222 237999999999999999987654
No 14
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.22 E-value=5.6e-12 Score=140.48 Aligned_cols=105 Identities=19% Similarity=0.355 Sum_probs=84.3
Q ss_pred HHHHHHcccccCCCCCCCchHHHHHHHHhhCCCc-ccc-cc---ccCCCCCcccceeccccccccchhhhcccc----cc
Q psy9414 398 YAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPI-IPL-NT---IYGNEKSRCCAIIKENKCIGCTLCIQSCPV----DA 468 (582)
Q Consensus 398 ~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~-~~~-~~---~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~----~a 468 (582)
+...+.+|+.+|..|..++.|.++.++..+|+.. ..+ .. .. .+...+.+.+|.++|++||+|+++||. ++
T Consensus 87 lelll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~~~~~~~-~~~~~~~i~~d~~kCi~Cg~Cv~~CP~~~~~~a 165 (574)
T 3c8y_A 87 ISQLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEY-VDERSKSLTVDRTKCLLCGRCVNACGKNTETYA 165 (574)
T ss_dssp HHHHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCCSCGGGG-EECCSSSEEEEGGGCCCCCHHHHHHHHHHSCCC
T ss_pred HHHHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCCCccccc-cccCCCcceeCcccCcCCCCccchhCchhcCCc
Confidence 4556778999999999999999999999999876 444 11 11 344556788999999999999999998 88
Q ss_pred eecccccc---------eeecccCCccccchhhcCccCceeeee
Q psy9414 469 IIGAAKHM---------HTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 469 i~~~~~~~---------~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
|.+...+. ..++...|++||.|+.+||++||.+..
T Consensus 166 i~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 166 MKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp SEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred eeeccCCccceecccccceechhhCCcchhHHHhhccCCccccc
Confidence 87654331 346788999999999999999999864
No 15
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=99.10 E-value=4.2e-11 Score=98.61 Aligned_cols=56 Identities=32% Similarity=0.734 Sum_probs=49.3
Q ss_pred eeccccccccchhhhcccccceecccccceeecccCCcccc------chhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg------~Cv~~CP~~AI~~~~~ 504 (582)
.+|.++|++|+.|+.+||+++|.+... ...++...|++|+ .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGDE-TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECSS-SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCccchHHHCChhheEcCCC-ceEEchhhcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 578899999999999999999987543 4567889999999 9999999999998754
No 16
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=99.08 E-value=2.9e-11 Score=94.43 Aligned_cols=56 Identities=20% Similarity=0.484 Sum_probs=46.1
Q ss_pred ceeccccccccchhhhcccccceecccc-cce-eec--ccCCccccchhhcCccCceeeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAK-HMH-TIF--SKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~~~-~i~--~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
+.+|.++|++||.|+.+|| +++.+... +.. .++ ...|++|+.|+.+||++||.+.+
T Consensus 4 ~~id~~~C~~Cg~C~~~CP-~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAP-GAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CEECSTTCCSCCHHHHHCT-TTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEccccCCCchHHHHhCC-ccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 5788999999999999999 89877543 322 233 67899999999999999998753
No 17
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=99.08 E-value=8.4e-11 Score=88.95 Aligned_cols=50 Identities=32% Similarity=0.743 Sum_probs=44.6
Q ss_pred cccccccchhhhcccccceecccccceeecccCCccccchhhcCccCceee
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
.++|++||.|+++||.++|....+ ...++...|++||.|+.+||++||.+
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGDD-RYVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCSS-SCEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred cccCcChhhHHHHCCccccCcCCC-EEEeccccCcChhChHHHccccceec
Confidence 789999999999999999987643 34678899999999999999999976
No 18
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=99.07 E-value=9.9e-11 Score=89.38 Aligned_cols=54 Identities=26% Similarity=0.595 Sum_probs=44.4
Q ss_pred ceeccccccccchhhhcccccceec-cccccee--ecccCCccccchhhcCccCceee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIG-AAKHMHT--IFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~-~~~~~~~--i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
+.+|.++|++||.|+.+|| +++.+ ..++... ++...|++||.|+.+||++||++
T Consensus 2 i~i~~~~C~~C~~C~~~Cp-~~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCP-EVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp EEESSCCCSSCCGGGGTST-TTEEEEECSSCEEESCTTCCCGGGGTGGGGSTTCCEEE
T ss_pred eEEChhhCcChhHHHHHCC-HHheecCCCCcEEEecChhhhhHHHHHHHhCCHhhEEc
Confidence 4678999999999999999 47776 3333333 47889999999999999999986
No 19
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=99.07 E-value=7e-11 Score=96.25 Aligned_cols=56 Identities=32% Similarity=0.702 Sum_probs=48.8
Q ss_pred eeccccccc--cchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~--Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+|.++|++ ||.|+++||.+||.+.. +...++...|++||.|+.+||++||.+...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~-~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGG-DQFYIHPEECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS-SSEEECTTTCCCCCTHHHHCTTCCEEEGGG
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCC-CEEEECcccCCcHhHHHHhCCccceEeccc
Confidence 578899999 99999999999998764 345678899999999999999999997653
No 20
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=99.06 E-value=6.4e-11 Score=96.94 Aligned_cols=56 Identities=27% Similarity=0.691 Sum_probs=48.6
Q ss_pred eeccccccccchhhhcccccceecccccceeecccCCcccc------chhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg------~Cv~~CP~~AI~~~~~ 504 (582)
+++.++|++||.|+.+||++||.+..+ ...++...|++|+ .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDP-IYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPD 63 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSS-SCEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCGG
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCC-eeEEcchhCcCCCCcCCccHHHHhcCcccEEecCC
Confidence 467899999999999999999987643 3467889999999 9999999999998653
No 21
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=99.05 E-value=5.1e-11 Score=102.19 Aligned_cols=58 Identities=24% Similarity=0.523 Sum_probs=47.9
Q ss_pred ccceeccccccccchhhhcccccceeccccc--------ceeecccCCccccchhhcCccCceeee
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKH--------MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~--------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..+.+|.++|++||.|+.+||+++|.+.... ...++...|++||.|+.+||++||++.
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred ceEEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEec
Confidence 3567899999999999999999998764321 124567889999999999999999875
No 22
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.05 E-value=3.1e-11 Score=125.80 Aligned_cols=84 Identities=25% Similarity=0.625 Sum_probs=67.5
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. .+||.++.. .+...+.+.+|.++|++|+.|+.+|
T Consensus 149 ~~C~~C~~~~Cv-------------~~CP~gAi~---------------------~~~~~g~v~id~~kCigCg~Cv~aC 194 (352)
T 2ivf_B 149 RMCNHCTNPACL-------------AACPTGAIY---------------------KREDNGIVLVDQERCKGHRHCVEAC 194 (352)
T ss_dssp ECCCCCSSCHHH-------------HHCTTCCEE---------------------ECTTTCCEEECTTTCCCCCHHHHHC
T ss_pred CCCcCcCCcccc-------------ccCCCCcee---------------------ecCCCCeEEechhhcCCchHHHhhc
Confidence 489999999997 679987632 1112346788999999999999999
Q ss_pred cccceecccccceeecccCCcccc---------chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~~~ 505 (582)
|++||.+... .....+|++|+ .|+++||++||.+.+..
T Consensus 195 P~~Ai~~~~~---~~~~~kC~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~ 241 (352)
T 2ivf_B 195 PYKAIYFNPV---SQTSEKCILCYPRIEKGIANACNRQCPGRVRAFGYLD 241 (352)
T ss_dssp TTCCEEEETT---TTEEEECCTTHHHHTTTBCCHHHHTCTTCCEEEEETT
T ss_pred Cccceecccc---cccccccCCCcchhhcCCCChHHHhcCccceeccccc
Confidence 9999987643 23567899996 99999999999998654
No 23
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=99.05 E-value=7.4e-11 Score=95.82 Aligned_cols=55 Identities=31% Similarity=0.683 Sum_probs=48.2
Q ss_pred eeccccccc--cchhhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 448 IIKENKCIG--CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 448 ~id~~~Ci~--Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.++.++|++ ||.|+++||++||.+.. +...++...|++||.|+.+||++||.+..
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~-~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGE-DQYYIDPDVCIDCGACEAVCPVSAIYHED 58 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECS-SSEEECTTTCCSCCSHHHHSGGGSSEETT
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCC-CcEEECcccCcCccCCHhhcCccceEecC
Confidence 467899999 99999999999998764 34567889999999999999999999754
No 24
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=99.05 E-value=9.6e-11 Score=101.32 Aligned_cols=56 Identities=29% Similarity=0.756 Sum_probs=49.3
Q ss_pred eeccccccccc--hhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+|.++|++|+ .|+.+||+++|....+ ...++...|++||.|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~~-~~~i~~~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGPN-FLVIHPDECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSS-CEEECTTTCCCCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCccCcHHHHHcCccceEcCCC-cEEECcccCCChhhhHHhCCChhhhcccc
Confidence 57889999999 9999999999987643 35678899999999999999999998764
No 25
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=99.05 E-value=8.5e-11 Score=96.66 Aligned_cols=56 Identities=34% Similarity=0.824 Sum_probs=48.5
Q ss_pred eeccccccccchhhhcccccceecccccceeecccCCcccc------chhhcCccCceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg------~Cv~~CP~~AI~~~~~ 504 (582)
+++.++|++||.|+.+||++||.+... ...++...|++|| .|+.+||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQGEE-IYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDA 63 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEECSS-SEEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCTT
T ss_pred ceeCCCCCChhhHHHHCChhccCCCCC-eEEEEchhCccCCCcCCCCHhHhhCCcccEEccCC
Confidence 457899999999999999999987643 3567889999999 9999999999998653
No 26
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=99.04 E-value=1.2e-10 Score=111.98 Aligned_cols=82 Identities=32% Similarity=0.766 Sum_probs=66.5
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. .+||.++.. ....+.+.+|.++|++|+.|+.+|
T Consensus 56 ~~C~~C~~p~C~-------------~~CP~gAi~----------------------~~~~g~~~id~~~CigC~~C~~~C 100 (195)
T 2vpz_B 56 EQCLHCENPPCV-------------PVCPTGASY----------------------QTKDGLVLVDPKKCIACGACIAAC 100 (195)
T ss_dssp EECCCCSSCTTT-------------TTCSSSCEE----------------------ECTTSCEEECTTTCCCCCHHHHHC
T ss_pred ccCcCccCcHHH-------------HhcCCCcee----------------------cccccceeecCCCCCCcChhHhhC
Confidence 479999999997 799988642 001245688999999999999999
Q ss_pred cccceecccccceeecccCCcccc---------chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~~~ 505 (582)
|++||.+..... ..+|++|+ .|+++||++||.+.+..
T Consensus 101 P~~Ai~~~~~~~----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 101 PYDARYLHPAGY----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp TTCCCEECTTSS----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred CCCCeEECCCCC----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 999998765432 67899999 79999999999997543
No 27
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=99.04 E-value=8.2e-11 Score=90.17 Aligned_cols=55 Identities=20% Similarity=0.446 Sum_probs=44.5
Q ss_pred ceeccccccccchhhhcccccceecccccceeec--ccCCccccchhhcCccCceeee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIF--SKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~--~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
+.+|.++|++||.|+.+||. ++.+..++...+. ...|.+||.|+.+||++||++.
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~-~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPD-VFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTT-TBCCCSSSCCCBSCSSCCSTTHHHHHHHCTTCCEECC
T ss_pred EEEchhhCCCChHHHHhCcH-HHeECCCCCEeecCchhhHHHHHHHHHhCCHhHEEEe
Confidence 46789999999999999997 6665443433333 6789999999999999999875
No 28
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=99.03 E-value=7.5e-11 Score=90.06 Aligned_cols=53 Identities=17% Similarity=0.461 Sum_probs=43.7
Q ss_pred ceeccccccccchhhhcccccceecccccc-eeec--ccCCccccchhhcCccCceee
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHM-HTIF--SKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~-~~i~--~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
+.+| ++|++||.|+++||. ++.+...+. ..++ ...|++||.|+++||++||++
T Consensus 2 v~id-~~C~~C~~C~~~CP~-~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPD-VFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTT-TEEECSSSSSEEESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred cEEC-CcCccchHHHHhCCc-cEEECCCCcEEEeCCCccchHHHHHHHhhCChhhEEe
Confidence 4678 999999999999998 666544332 4556 789999999999999999976
No 29
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=99.02 E-value=9.6e-11 Score=95.45 Aligned_cols=59 Identities=27% Similarity=0.665 Sum_probs=47.4
Q ss_pred ceeccccccccchhhhcccccceecccc-c----c--eeecccCCccccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAK-H----M--HTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~-~----~--~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.++.++|++||.|+.+||++++.+... + . ..++...|++||.|+.+||++||.+....
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~ 68 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVYL 68 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEEC
T ss_pred CcccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeeec
Confidence 4668899999999999999999876531 1 1 12356789999999999999999987654
No 30
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=99.01 E-value=8.4e-11 Score=96.52 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=46.5
Q ss_pred cceeccccccccchhhhcccccceecccccceeec-----------ccCCccccchhhcCccCceeeeec
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIF-----------SKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~-----------~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+.+|.++|++||.|+.+|| +++.++..+...+. ...|..|+.|+.+||++||++...
T Consensus 3 ~v~vd~~~CigCg~C~~~CP-~~~~~~~~g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAP-DIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCT-TTEEECTTSCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccChhhHhCc-hheeeCCCCeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 45789999999999999999 78776533332322 467999999999999999998754
No 31
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=99.01 E-value=7.4e-11 Score=119.31 Aligned_cols=82 Identities=18% Similarity=0.408 Sum_probs=65.7
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. ..||. +.. ....+.+.+|.++|++|+.|+.+|
T Consensus 66 ~~C~~C~~p~C~-------------~~CP~-Ai~----------------------~~~~g~v~id~~~CigC~~C~~~C 109 (274)
T 1ti6_B 66 TPCMHCENAPCV-------------AKGNG-AVY----------------------QREDGIVLIDPEKAKGKKELLDTC 109 (274)
T ss_dssp ECCCCCTTCHHH-------------HHTTT-SEE----------------------ECTTSCEEECTTTTTTCGGGGGGC
T ss_pred CcCCCCCChHHH-------------hhChH-Hhh----------------------hccCCcEEechhhccchHHHHhhC
Confidence 479999999997 57886 531 012345789999999999999999
Q ss_pred cccceecccccceeecccCCccc----------c---chhhcCccCceeeeecC
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGC----------D---LCIKKCPVNCISMIEVT 505 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~C----------g---~Cv~~CP~~AI~~~~~~ 505 (582)
|++||.+.... ....+|++| | .|+++||++||.+.+..
T Consensus 110 P~~Ai~~~~~~---~~~~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~ 160 (274)
T 1ti6_B 110 PYGVMYWNEEE---NVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTT 160 (274)
T ss_dssp SSCCCEEETTT---TEEECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEEC
T ss_pred ccCCeEEEccc---CccccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCC
Confidence 99999876432 346789999 8 99999999999998653
No 32
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=99.00 E-value=1.5e-10 Score=96.02 Aligned_cols=56 Identities=36% Similarity=0.739 Sum_probs=48.6
Q ss_pred eeccccccccchhhhcccccceecccccceeecccCCcccc------chhhcCcc-Cceeeeec
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPV-NCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg------~Cv~~CP~-~AI~~~~~ 504 (582)
+++.++|++||.|+.+||++||.+... ...++...|++|| .|+.+||+ +||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~-~~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISMGDH-IYEINSDKCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEECCSS-SCEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred EEeCCcCcChhHHHHHCchhccCcCCC-ceEEeChhccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 467899999999999999999987643 3567889999999 99999999 99998653
No 33
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=98.96 E-value=3.5e-10 Score=97.48 Aligned_cols=56 Identities=32% Similarity=0.722 Sum_probs=48.9
Q ss_pred eecccccccc--chhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 448 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 448 ~id~~~Ci~C--g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.++.++|++| |.|+.+||+++|.+..+ ...++...|++||.|+.+||++||.+...
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~~-~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 59 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGAR-MLYIHPDECVDCGACEPVCPVEAIYYEDD 59 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECSS-CEEECTTTCCCCCCSGGGCTTCCEEEGGG
T ss_pred EEecccCCCCCcChhhhhcCccccCcCCC-cEEEeCCcCcchhhHHHhCCccCEEecCC
Confidence 5788999988 99999999999987643 35678899999999999999999998753
No 34
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.95 E-value=2.8e-10 Score=106.67 Aligned_cols=59 Identities=29% Similarity=0.627 Sum_probs=50.7
Q ss_pred ceeccccccccc-----hhhhcccccceeccccc--ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg-----~Cv~~CP~~ai~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.+|.++|++|+ .|+.+||++||.+...+ ...++...|++||.|+.+||++||.+....
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 67 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAITARPYA 67 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCSSCCEEECCCT
T ss_pred CEEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCcccCcccChHhHhCCccceEEeccc
Confidence 468999999999 99999999999886544 234677899999999999999999998654
No 35
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=98.95 E-value=2.6e-10 Score=107.91 Aligned_cols=56 Identities=34% Similarity=0.648 Sum_probs=46.0
Q ss_pred ccccccccchhhhcccccceeccccc---------------ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGAAKH---------------MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~~~~---------------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
|.++|++|+.|+.+||+++|.+.... ...++...|++||.|+.+||++||.+....
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~~ 119 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDF 119 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEETTTCCCCCHHHHHCSSSCEEECSCC
T ss_pred CCccCcccccchhhCCcccEEeecccccccccccccccccceeecCCCcCcChhChhhhCCccceEecCcc
Confidence 46799999999999999999754321 234677899999999999999999998543
No 36
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=98.93 E-value=1.7e-10 Score=117.92 Aligned_cols=82 Identities=29% Similarity=0.681 Sum_probs=65.0
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCC-CchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPT-GGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQS 463 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~ 463 (582)
..|.+|+.+.|. .+||. ++.. ....+.+.+|.++|++|+.|+.+
T Consensus 98 ~~C~~C~~~~C~-------------~~CP~~gAi~----------------------~~~~g~v~id~~~CigCg~C~~~ 142 (294)
T 1kqf_B 98 DGCMHCEDPGCL-------------KACPSAGAII----------------------QYANGIVDFQSENCIGCGYCIAG 142 (294)
T ss_dssp ESCCCBSSCHHH-------------HHCCSTTSEE----------------------EETTSCEEECGGGCCCCCHHHHH
T ss_pred ccCCCcCChhhh-------------hhCCccCccc----------------------cccccceEeCcccCCCcchhhhc
Confidence 479999999997 68987 5431 01234578899999999999999
Q ss_pred ccccceecccccceeecccCCcccc---------chhhcCccCceeeeec
Q psy9414 464 CPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIEV 504 (582)
Q Consensus 464 CP~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~~ 504 (582)
||+++|.+.... ....+|++|+ .|+.+||++||.+.+.
T Consensus 143 CP~~ai~~~~~~---~~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~ 189 (294)
T 1kqf_B 143 CPFNIPRLNKED---NRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTK 189 (294)
T ss_dssp CTTCCCEEETTT---TEEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEH
T ss_pred CCCCCcEecCCC---CCeeeCCCccchhhcCccHHHHHhCCcCcEEEecH
Confidence 999999875432 2345899998 9999999999999753
No 37
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=98.92 E-value=4.1e-10 Score=103.74 Aligned_cols=59 Identities=25% Similarity=0.589 Sum_probs=50.4
Q ss_pred ceeccccccccc-----hhhhcccccceeccccc--ceeecccCCccccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCT-----LCIQSCPVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg-----~Cv~~CP~~ai~~~~~~--~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.+|.++|++|+ .|+++||++||.++..+ ...++...|++||.|+.+||++||.+....
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~ 68 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDVRGYV 68 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCGGGCCCCCHHHHHCTTCCEEECCCT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCcccCcCHhHHHHhCCccceEecCcc
Confidence 468899999999 99999999999876543 235778899999999999999999987654
No 38
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=98.90 E-value=4.7e-10 Score=109.47 Aligned_cols=83 Identities=19% Similarity=0.482 Sum_probs=64.9
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCC---CCchHHHHHHHHhhCCCccccccccCCCCCcccceecccccc--ccch
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCP---TGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCI--GCTL 459 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci--~Cg~ 459 (582)
..|.+|+.+.|. .+|| .++.. .+...+.+.+|.++|+ +|+.
T Consensus 70 ~~C~~C~~p~C~-------------~~CP~~~~gAi~---------------------~~~~~g~v~id~~~C~~~~C~~ 115 (214)
T 1h0h_B 70 DQCRHCIAPPCK-------------ATADMEDESAII---------------------HDDATGCVLFTPKTKDLEDYES 115 (214)
T ss_dssp ECCCCCSSCHHH-------------HHHTTTCTTSEE---------------------ECTTTCCEEECGGGGGCSCHHH
T ss_pred CcCcCcCCchhh-------------ccCCccccccEE---------------------ecCCCCeEEEeHHHCccccccH
Confidence 479999998887 6788 54421 0111345788999999 9999
Q ss_pred hhhcccccceecccccceeecccCCccc------c---chhhcCccCceeeeec
Q psy9414 460 CIQSCPVDAIIGAAKHMHTIFSKLCTGC------D---LCIKKCPVNCISMIEV 504 (582)
Q Consensus 460 Cv~~CP~~ai~~~~~~~~~i~~~~C~~C------g---~Cv~~CP~~AI~~~~~ 504 (582)
|+.+||++||.+.... .+..+|++| | .|+++||++||.+.+.
T Consensus 116 C~~~CP~~Ai~~~~~~---~~~~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~ 166 (214)
T 1h0h_B 116 VISACPYDVPRKVAES---NQMAKCDMCIDRITNGLRPACVTSCPTGAMNFGDL 166 (214)
T ss_dssp HHHHCTTCCCEECTTS---SCEECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEH
T ss_pred HHHhcCCCCeEecCCC---cccCcCCCCcchhhcCCChhHHHhcCcccEEEccH
Confidence 9999999999876432 346789999 5 9999999999999764
No 39
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=98.90 E-value=6.2e-10 Score=119.39 Aligned_cols=62 Identities=37% Similarity=0.813 Sum_probs=52.5
Q ss_pred CCCCcc-cceeccccccccchhhhcccccceecccccceee-cccCCccccchhhcCccCceee
Q psy9414 440 NEKSRC-CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTI-FSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 440 ~~~~~~-~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
.+.+.+ .+.+|.++|++|+.|+++||++||.........+ +...|++||.|+.+||++||.+
T Consensus 20 ~d~~~~m~i~~d~~kCi~Cg~C~~~CP~~ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 20 ADPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp CCGGGCCSEEECTTTCCCCCHHHHHCTTCCCBCCTTSCCBCCCGGGCCCCCTTGGGCTTCCEEE
T ss_pred cCCCCCceEEECcccCCCccHHHHhcCcCceecccccceeecChhhCCchhhHHHhhCcCCccc
Confidence 344555 7889999999999999999999998764433445 7889999999999999999998
No 40
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=98.85 E-value=5.8e-10 Score=87.09 Aligned_cols=57 Identities=21% Similarity=0.456 Sum_probs=44.3
Q ss_pred cceeccccccccchhhhcccccceecccccce-eec---cc--CCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAAKHMH-TIF---SK--LCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~-~i~---~~--~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.+.+|.++|++||.|+.+||. ++.++.++.. .++ .. .|..|+.|+++||++||.+.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~-~~~~~~~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPD-VFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTT-TEEECTTSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECcccCcCchHHHHhCCc-eEEECCCCceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 357899999999999999995 8876533332 233 23 478999999999999998864
No 41
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.85 E-value=5e-10 Score=121.49 Aligned_cols=82 Identities=27% Similarity=0.557 Sum_probs=64.9
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. .+||.++.. .+...+.+.+|.++|++|+.|+.+|
T Consensus 182 ~~C~~C~~~~Cv-------------~aCP~gAI~---------------------~~~~~g~v~id~~kCigCg~Cv~~C 227 (512)
T 1q16_B 182 RLCEHCLNPACV-------------ATCPSGAIY---------------------KREEDGIVLIDQDKCRGWRMCITGC 227 (512)
T ss_dssp ECCCCCSSCHHH-------------HTCTTCCEE---------------------EETTTCCEEECTTTCCCCCCHHHHC
T ss_pred ccCcCCCCchhh-------------hhCCcCcEE---------------------eecCCCeEEECHHHCCCchHHHhhC
Confidence 489999988887 689876531 0112345788999999999999999
Q ss_pred cccceecccccceeecccCCcccc---------chhhcCccCceeeee
Q psy9414 465 PVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNCISMIE 503 (582)
Q Consensus 465 P~~ai~~~~~~~~~i~~~~C~~Cg---------~Cv~~CP~~AI~~~~ 503 (582)
|++||.+.... ....+|++|+ .|+++||++||.+..
T Consensus 228 P~~AI~~~~~~---~~~~kC~~Cg~ri~~G~~P~Cv~~CP~~Ai~~g~ 272 (512)
T 1q16_B 228 PYKKIYFNWKS---GKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGV 272 (512)
T ss_dssp TTCCEEEETTT---TEEEECCTTHHHHTTTCCCHHHHTCTTCCEEEEE
T ss_pred CccceecccCC---CCcccCcCCCchhhcCCCCceEeeCchhhhhccc
Confidence 99999876432 2367899999 999999999998763
No 42
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.69 E-value=9.6e-09 Score=122.95 Aligned_cols=60 Identities=27% Similarity=0.583 Sum_probs=49.6
Q ss_pred cceeccccccccchhhhcccccceecc---cc--------------------c---ceeecccCCccccchhhcCcc--C
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA---AK--------------------H---MHTIFSKLCTGCDLCIKKCPV--N 497 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~---~~--------------------~---~~~i~~~~C~~Cg~Cv~~CP~--~ 497 (582)
.+.+|.++|++||.|+.+||.++|... .. + ...++...|++||.|+.+||+ +
T Consensus 680 ~p~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~~ 759 (1231)
T 2c42_A 680 VPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEK 759 (1231)
T ss_dssp EEEECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSSC
T ss_pred ceEEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCcc
Confidence 467899999999999999999998642 10 0 134678899999999999999 9
Q ss_pred ceeeeecC
Q psy9414 498 CISMIEVT 505 (582)
Q Consensus 498 AI~~~~~~ 505 (582)
||.+....
T Consensus 760 AI~~~~~~ 767 (1231)
T 2c42_A 760 ALVMQPLD 767 (1231)
T ss_dssp SEEEEEGG
T ss_pred CeEEecch
Confidence 99998765
No 43
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=98.60 E-value=1.7e-08 Score=96.89 Aligned_cols=59 Identities=22% Similarity=0.613 Sum_probs=51.7
Q ss_pred cceeccccccccc--hhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 446 CAIIKENKCIGCT--LCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 446 ~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+.++...|++|+ .|+.+||++||.....+...++.+.|++||.|+.+||++||.+...
T Consensus 50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~~~g~~~id~~~CigC~~C~~~CP~~Ai~~~~~ 110 (195)
T 2vpz_B 50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDARYLHPA 110 (195)
T ss_dssp EEEEEEEECCCCSSCTTTTTCSSSCEEECTTSCEEECTTTCCCCCHHHHHCTTCCCEECTT
T ss_pred eEEECcccCcCccCcHHHHhcCCCceecccccceeecCCCCCCcChhHhhCCCCCeEECCC
Confidence 4567889999999 7999999999987655666788999999999999999999998654
No 44
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=98.59 E-value=1.9e-08 Score=104.83 Aligned_cols=60 Identities=25% Similarity=0.551 Sum_probs=51.7
Q ss_pred ccceeccccccccc--hhhhcccccceeccc-ccceeecccCCccccchhhcCccCceeeeec
Q psy9414 445 CCAIIKENKCIGCT--LCIQSCPVDAIIGAA-KHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~~-~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+.++.++|++|+ .|+.+||++||.... .+...++.++|++|+.|+.+||++||.+...
T Consensus 142 ~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 142 PFFFYLARMCNHCTNPACLAACPTGAIYKREDNGIVLVDQERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp EECEEEEECCCCCSSCHHHHHCTTCCEEECTTTCCEEECTTTCCCCCHHHHHCTTCCEEEETT
T ss_pred eEEEECCCCCcCcCCccccccCCCCceeecCCCCeEEechhhcCCchHHHhhcCccceecccc
Confidence 35678899999999 999999999997653 4556788899999999999999999998653
No 45
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=98.46 E-value=6.7e-08 Score=104.85 Aligned_cols=60 Identities=25% Similarity=0.507 Sum_probs=51.6
Q ss_pred ccceeccccccccc--hhhhcccccceecc-cccceeecccCCccccchhhcCccCceeeeec
Q psy9414 445 CCAIIKENKCIGCT--LCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg--~Cv~~CP~~ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
..+.++.++|++|+ .|+.+||++||... ..+...++.++|++||.|+.+||++||.+...
T Consensus 175 ~~i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~~AI~~~~~ 237 (512)
T 1q16_B 175 TFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWK 237 (512)
T ss_dssp CCCEEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEETT
T ss_pred ceEEecCccCcCCCCchhhhhCCcCcEEeecCCCeEEECHHHCCCchHHHhhCCccceecccC
Confidence 45678999999999 79999999999864 34556788999999999999999999998743
No 46
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.41 E-value=9e-08 Score=113.64 Aligned_cols=61 Identities=38% Similarity=0.873 Sum_probs=51.0
Q ss_pred cccceeccccccccchhhhcccc---cceeccccc-ceeecccCCccccchhhcCcc-CceeeeecC
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPV---DAIIGAAKH-MHTIFSKLCTGCDLCIKKCPV-NCISMIEVT 505 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~---~ai~~~~~~-~~~i~~~~C~~Cg~Cv~~CP~-~AI~~~~~~ 505 (582)
...+.+|.++|++||.|+.+||. ++|.+.... ...++ ..|++||.|+.+||+ +||++....
T Consensus 943 ~~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 943 QVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVT-DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp CEEEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEEC-TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred cceEEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEeC-ccCCChhHHHhhCCCCCCEEEecCc
Confidence 44568899999999999999996 899876543 34455 899999999999999 999998754
No 47
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=98.38 E-value=1.4e-07 Score=96.35 Aligned_cols=58 Identities=33% Similarity=0.756 Sum_probs=50.3
Q ss_pred cceeccccccccc--hhhhcccc-cceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCT--LCIQSCPV-DAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg--~Cv~~CP~-~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...++.+.|++|+ .|+.+||+ +||.....+...++.++|++||.|+.+||++||.+..
T Consensus 92 ~~~~~~~~C~~C~~~~C~~~CP~~gAi~~~~~g~v~id~~~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 92 EWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEEEEESCCCBSSCHHHHHCCSTTSEEEETTSCEEECGGGCCCCCHHHHHCTTCCCEEET
T ss_pred eEEECcccCCCcCChhhhhhCCccCccccccccceEeCcccCCCcchhhhcCCCCCcEecC
Confidence 3456789999999 89999999 9998655566678899999999999999999998864
No 48
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=98.32 E-value=2.9e-07 Score=92.92 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=49.5
Q ss_pred cceeccccccccch--hhhcccccceecccccceeecccCCccccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~--Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
...+....|++|+. |+.+||+ ||.....+...++.++|++|+.|+.+||++||.+..
T Consensus 60 ~~~~~~~~C~~C~~p~C~~~CP~-Ai~~~~~g~v~id~~~CigC~~C~~~CP~~Ai~~~~ 118 (274)
T 1ti6_B 60 DINYRPTPCMHCENAPCVAKGNG-AVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNE 118 (274)
T ss_dssp EEEEEEECCCCCTTCHHHHHTTT-SEEECTTSCEEECTTTTTTCGGGGGGCSSCCCEEET
T ss_pred eeeEcCCcCCCCCChHHHhhChH-HhhhccCCcEEechhhccchHHHHhhCccCCeEEEc
Confidence 34677889999998 9999999 997654566788999999999999999999999864
No 49
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.30 E-value=1.1e-07 Score=104.92 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=67.1
Q ss_pred eecccccccccccccCCCcEEecC--cccccChHHHHHHH-HHcCCCCCCCCCCCceeEeecccCC--Cccccccchhhh
Q psy9414 48 IYPMYDYAHPISDAIENITHSICT--LEFQDHRPFYEWIL-NKIDKTNFIKRPFPKQYEFSRLNLT--HTITSKRKLLKL 122 (582)
Q Consensus 48 ~~P~Y~fa~~vdD~~~githvir~--~e~~~~~~~~~~l~-~~l~~~~~~~~~~p~~~~~~~l~~~--~~~lSKr~~~~~ 122 (582)
.+|+|+|+++|| ++|++|+.++ .+|. .++. ++||+ .+|.+.|++.+... |.|||||+.+
T Consensus 223 ~~~~~~l~~~vd--~~G~Dh~~~h~s~~~~------~~i~~~alG~------~~p~~~h~~~i~~~g~g~KmSKs~Gn-- 286 (523)
T 1irx_A 223 PMRWSHFGVDFE--PAGKDHLVAGSSYDTG------KEIIKEVYGK------EAPLSLMYEFVGIKGQKGKMSGSKGN-- 286 (523)
T ss_dssp HHHHHHSCCCBC--CEEHHHHSTTSHHHHH------HHHHHHHHCC------CCCBCCEECCEEESCC---------C--
T ss_pred HhhHHHcCCCCc--CCCcCccCCCcchhhH------HHHHHHHhCC------CCCeEEEEEEEEeCCCCCCCCCcCCC--
Confidence 346889999888 8899999886 4443 2333 79999 88999999987766 8999999842
Q ss_pred ccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHH-HHHH
Q psy9414 123 LEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE-ILEQ 175 (582)
Q Consensus 123 v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~-~l~~ 175 (582)
..|+..+++. |.|+||++|+.+.|+. ++..|+++ .|..
T Consensus 287 -------------~i~~~~~~~~-~~pdalR~~l~~~~~~-~~~~fs~~~~l~~ 325 (523)
T 1irx_A 287 -------------VILLSDLYEV-LEPGLVRFIYARHRPN-KEIKIDLGLGILN 325 (523)
T ss_dssp -------------CCCHHHHHTT-SCHHHHHHHHHSSCTT-SCEEECCSTTHHH
T ss_pred -------------CCCHHHHHHH-cCHHHHHHHHHhcCCC-CCceeCcchhHHH
Confidence 3478899988 9999999999987774 35566666 4444
No 50
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=98.29 E-value=1.4e-07 Score=99.31 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=47.8
Q ss_pred cceeccccc-ccc--chhhhcccccceecc-cccceeecccCCccccchhhcCccCceeee
Q psy9414 446 CAIIKENKC-IGC--TLCIQSCPVDAIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 446 ~~~id~~~C-i~C--g~Cv~~CP~~ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.+.+|.+.| .+| +.|+.+||++||..+ ..+...++.+.|++||.|+.+||++||...
T Consensus 199 ~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~ 259 (366)
T 3mm5_B 199 PPIPNDEAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDP 259 (366)
T ss_dssp CCCCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTEEEECGGGCCCCCHHHHHCTTCCCCCT
T ss_pred ceEEcchhccccccccchhccCCccceEecCCCCeEEEehhhCCCcchHHHhCCHhhcccc
Confidence 356788877 567 999999999999886 245678899999999999999999998643
No 51
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.20 E-value=1.8e-07 Score=92.44 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=56.4
Q ss_pred cccc-cCCCCCCCchH-HHHHHHHhhCCCcccc-cc-ccCCCCCcccceeccccccccchhhhcccccceecc-------
Q psy9414 404 NKKA-NYNQCPTGGRK-GIIKLAKYLNKPIIPL-NT-IYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGA------- 472 (582)
Q Consensus 404 ~~~~-~c~~Cp~~~~~-~l~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~------- 472 (582)
+|+. .+.+|..++.+ .++.+..+++... .+ .. ....+........+.++|++||.|+.+||..++...
T Consensus 96 ~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~~p~~ 174 (238)
T 2wdq_B 96 GLPVIRDLVVDMGQFYAQYEKIKPYLLNNG-QNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAG 174 (238)
T ss_dssp TSBEEETTEECCHHHHHHHHHTCCSCCCCC-SSCCSSSCCCCHHHHHTTTTTTTCCCCCTTGGGCHHHHHCTTTSCCHHH
T ss_pred CCcchhhceechHHHHHHHHhhcCccccCc-CCCCcccccCCHHHHHHHhccccccccCCchhhCcCCccCCCCCCCHHH
Confidence 5555 56677777663 5665544444322 11 00 011111223456688999999999999998664210
Q ss_pred --------cccc-------e-----eecccCCccccchhhcCccCce
Q psy9414 473 --------AKHM-------H-----TIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 473 --------~~~~-------~-----~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
.+.. . ......|+.||.|+++||+++.
T Consensus 175 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 221 (238)
T 2wdq_B 175 LLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLN 221 (238)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCC
T ss_pred HHHHHHHHhCCcccchHHHHHHHhccCCCCcCcccchhhhhcCCCCC
Confidence 0000 0 0245789999999999999954
No 52
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=98.13 E-value=6.5e-07 Score=87.14 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=49.7
Q ss_pred cceeccccccccch--hhhccc---ccceeccc-ccceeecccCCc--cccchhhcCccCceeeee
Q psy9414 446 CAIIKENKCIGCTL--CIQSCP---VDAIIGAA-KHMHTIFSKLCT--GCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~--Cv~~CP---~~ai~~~~-~~~~~i~~~~C~--~Cg~Cv~~CP~~AI~~~~ 503 (582)
...++...|++|+. |+.+|| ++||.... .+...++.+.|+ +|+.|+.+||++||.+..
T Consensus 64 ~~~~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~~~g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~ 129 (214)
T 1h0h_B 64 DWLFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVA 129 (214)
T ss_dssp EEEEEEECCCCCSSCHHHHHHTTTCTTSEEECTTTCCEEECGGGGGCSCHHHHHHHCTTCCCEECT
T ss_pred eeeecCCcCcCcCCchhhccCCccccccEEecCCCCeEEEeHHHCccccccHHHHhcCCCCeEecC
Confidence 34567899999996 999999 99998654 455678899999 999999999999999864
No 53
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=98.11 E-value=6.2e-07 Score=94.86 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=46.3
Q ss_pred cceecccccc-cc--chhhhcccccceeccc---c----cceeecccCCccccchhhcCccCceeee
Q psy9414 446 CAIIKENKCI-GC--TLCIQSCPVDAIIGAA---K----HMHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 446 ~~~id~~~Ci-~C--g~Cv~~CP~~ai~~~~---~----~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
.+.+|.+.|. .| +.|+.+||++||.... + ....++.++|++||.|+.+||.+||...
T Consensus 210 ~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~~Ai~~~ 276 (386)
T 3or1_B 210 PPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPALPLSDG 276 (386)
T ss_dssp CCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTTCCCCCT
T ss_pred cceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCCcCCccccHHHhCcHhhCcCC
Confidence 3467888875 34 9999999999998742 2 2467899999999999999999998754
No 54
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.08 E-value=1.7e-07 Score=92.92 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=57.8
Q ss_pred cccccCCCCCCCchHHHHHHHHhhCCCccccccc--------cCCCCCcccceeccccccccchhhhcccccceec----
Q psy9414 404 NKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTI--------YGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIG---- 471 (582)
Q Consensus 404 ~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~---- 471 (582)
-++.++..|..++.+.++.++..++.....+... ............+.++|++||.|+.+||..++..
T Consensus 90 i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~g 169 (243)
T 1kf6_B 90 VEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIG 169 (243)
T ss_dssp EECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCGGGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHHHHCTTSCC
T ss_pred EEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCCccccccCCHHHHHHhhhhhhccccCccccccCCCcccCCCCC
Confidence 3556667777777777777776655322111110 0000111124578899999999999999876531
Q ss_pred ------------ccc------ccee----ecccCCccccchhhcCccC
Q psy9414 472 ------------AAK------HMHT----IFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 472 ------------~~~------~~~~----i~~~~C~~Cg~Cv~~CP~~ 497 (582)
+.. .... .....|++||.|+.+||++
T Consensus 170 P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 170 PAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp HHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTC
T ss_pred HHHHHHHHHHhhCccccchHHHHHHHhccCCcccCcccCCcchhCCCC
Confidence 100 0001 2356899999999999998
No 55
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=97.91 E-value=4.6e-06 Score=93.08 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=47.0
Q ss_pred eccccc------cccchhhhcccccceec-c-ccc---ceeecccCCccccchhhcCccCceeeee
Q psy9414 449 IKENKC------IGCTLCIQSCPVDAIIG-A-AKH---MHTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 449 id~~~C------i~Cg~Cv~~CP~~ai~~-~-~~~---~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.|.+.| ..|+.|+++||.+++.. + .++ ...++...|+.||.|..+||+++|.+..
T Consensus 507 ~d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~i~~~~ 572 (584)
T 2gmh_A 507 KDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQNINWVV 572 (584)
T ss_dssp SSTTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCCEEECC
T ss_pred cCcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCCceeEC
Confidence 367788 88999999999999977 3 244 5678999999999999999999998763
No 56
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=97.90 E-value=2.7e-06 Score=90.46 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=43.4
Q ss_pred ceeccccccc-------cchhhhcccccceecccccceeecccCCccccchhhcCccCcee
Q psy9414 447 AIIKENKCIG-------CTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 447 ~~id~~~Ci~-------Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~ 500 (582)
+.+|.+.|.. |+.|+.+||++||..++ +...++...|++||.|+.+||.+++.
T Consensus 243 ~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~-~~~~id~~~Ci~Cg~Ci~~CP~~~~~ 302 (418)
T 3mm5_A 243 IKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDG-KELTIDNRECVRCMHCINKMPKALKP 302 (418)
T ss_dssp CEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECS-SCEEECTTTCCCCCHHHHHCTTTEEC
T ss_pred ccccHHHHhhhccccccCccccccCCccccccCC-ceeEEChhhcCccChhHHhCcHhhcc
Confidence 4567666543 48899999999999874 45688999999999999999997654
No 57
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=97.84 E-value=4.9e-06 Score=83.56 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=41.4
Q ss_pred cccchhhhcccccceecccccceeecccCCccccchhhcCccCceeeeec
Q psy9414 455 IGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504 (582)
Q Consensus 455 i~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~ 504 (582)
.+|+.|++.||.++|.++.......+..+|++||.|+.+|| +||.+...
T Consensus 174 ~~C~~C~~~CP~g~I~id~~~~v~~d~~~C~~C~~C~~vCp-~aI~~~~~ 222 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKDGKLSVKNELSCTLCEECLRYCN-GSIRISFV 222 (265)
T ss_dssp SCCTTHHHHCTTCCEEEETTEEEESCGGGCCCCCHHHHHHT-TSEEEEEE
T ss_pred hhHHHHHHhCcccCeEecCCeeEEeccccCCCchHHHHhCC-CceEEEec
Confidence 89999999999999988654433456789999999999999 99987654
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.51 E-value=4.3e-05 Score=85.41 Aligned_cols=62 Identities=37% Similarity=0.820 Sum_probs=49.6
Q ss_pred cccceecccccc--ccc-hhhhccccc-----ceecc-cccceeecccCCccccchhhcCccCceeeeecC
Q psy9414 444 RCCAIIKENKCI--GCT-LCIQSCPVD-----AIIGA-AKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 444 ~~~~~id~~~Ci--~Cg-~Cv~~CP~~-----ai~~~-~~~~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
..+.++|.++|- .|+ .|.+.||.. +|.++ ..+...|....|++||.|+..||.+||.+...+
T Consensus 6 ~~~~~~~~~~c~~~~~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~nl~ 76 (608)
T 3j16_B 6 SRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLP 76 (608)
T ss_dssp EEEEEECSSSCCHHHHCSHHHHHCHHHHHTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCEEEEEES
T ss_pred ceEEEEeccccCccccccchhhcCCCccCCceEEEEcCCCCceEEehhhccccccccccCCccceEEecCC
Confidence 346788999995 584 899999973 66553 334578889999999999999999999987654
No 59
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=97.51 E-value=1.1e-05 Score=79.65 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=35.8
Q ss_pred eccccccccchhhhcccccceec----------------cc-ccc----------eeecccCCccccchhhcCccC
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIG----------------AA-KHM----------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~----------------~~-~~~----------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
.+.+.|++||.|+.+||.+++.. +. +.. .......|+.||.|+++||.+
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKN 221 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHHCTTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTC
T ss_pred hhhhhhhccCcCcccCCCCccCCCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCC
Confidence 45689999999999999986521 00 100 012356899999999999998
No 60
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=97.49 E-value=2.2e-05 Score=83.65 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=35.9
Q ss_pred chhhhcccccceecccccceeecccCCccccchhhcCccCce
Q psy9414 458 TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 458 g~Cv~~CP~~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~AI 499 (582)
+.|+..||++||..++ +...++...|+.||.|+.+||..+.
T Consensus 278 ~~vv~~CPt~ai~~~~-~~l~Id~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 278 AEVVGLCPTGCMTYES-GTLSIDNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp HHTTTTCTTCCEEEET-TEEEECGGGCCCCSHHHHHCTTTEE
T ss_pred hhhhccCcHHheeecC-CEEEEccccCCchhhhHhhCcHhhc
Confidence 5799999999999875 4568899999999999999998654
No 61
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=97.43 E-value=3.6e-05 Score=65.92 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=39.6
Q ss_pred ccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccccccccCCCCCcccceeccccccccchhhhcc
Q psy9414 385 TQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464 (582)
Q Consensus 385 ~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~~C 464 (582)
..|.+|+.+.|. ..||.+... . ..+.+.++.+.|++||.|+.+|
T Consensus 6 ~~C~~C~~~~C~-------------~~CP~~ai~---------------~--------~~~~~~i~~~~C~~Cg~C~~~C 49 (106)
T 7fd1_A 6 DNCIKCKYTDCV-------------EVCPVDCFY---------------E--------GPNFLVIHPDECIDCALCEPEC 49 (106)
T ss_dssp GGGTTTCCCHHH-------------HHCTTCCEE---------------E--------CSSCEEECTTTCCCCCTTGGGC
T ss_pred cccCCccCcHHH-------------HHcCccceE---------------c--------CCCcEEECcccCCChhhhHHhC
Confidence 478899877776 578876421 0 1123567889999999999999
Q ss_pred cccceeccc
Q psy9414 465 PVDAIIGAA 473 (582)
Q Consensus 465 P~~ai~~~~ 473 (582)
|++||.+..
T Consensus 50 P~~ai~~~~ 58 (106)
T 7fd1_A 50 PAQAIFSED 58 (106)
T ss_dssp TTCCEEEGG
T ss_pred CChhhhccc
Confidence 999998754
No 62
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.40 E-value=0.00018 Score=77.75 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=89.0
Q ss_pred CCcEEEEecCCCccccCCeee-eeccccccccc-ccccCCCcEEec--Ccc----cccChHHHHHHHHHcCCCCCCCCCC
Q psy9414 27 RDPIIYRIRHVNHYRTNNNWC-IYPMYDYAHPI-SDAIENITHSIC--TLE----FQDHRPFYEWILNKIDKTNFIKRPF 98 (582)
Q Consensus 27 ~D~v~~R~~~~~H~~~g~k~~-~~P~Y~fa~~v-dD~~~githvir--~~e----~~~~~~~~~~l~~~l~~~~~~~~~~ 98 (582)
+|+++.+....-+|.--..|= .+|.++.++.. .....|.++.|. |.| |..+.+.|...+ +|+ ..
T Consensus 179 ~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~--~g~------~~ 250 (461)
T 1li5_A 179 MDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCA--HDG------QY 250 (461)
T ss_dssp TCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHH--SSS------CC
T ss_pred cceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHh--cCC------CC
Confidence 699999985433333233443 46777776643 344457889999 999 444555555443 577 55
Q ss_pred Cc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHH
Q psy9414 99 PK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 177 (582)
Q Consensus 99 p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~ 177 (582)
|. +.|.+.+.++|.|||||..+ ..|+..+.++ |.|++|+-|+.. +--.++..|+++.|....
T Consensus 251 ~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~~~ 313 (461)
T 1li5_A 251 VNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQAR 313 (461)
T ss_dssp EEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHHHH
T ss_pred CcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHHHH
Confidence 54 56668998999999999853 3478887776 999999999987 556778899999887754
Q ss_pred H
Q psy9414 178 R 178 (582)
Q Consensus 178 ~ 178 (582)
+
T Consensus 314 ~ 314 (461)
T 1li5_A 314 A 314 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.39 E-value=4.5e-05 Score=85.10 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCcEE--ecCcccccChHHHHHHHHHcCCCCCCCCCCC--ceeEe--ecccCCCccccccchhhhccccccCCCCCCCcc
Q psy9414 64 NITHS--ICTLEFQDHRPFYEWILNKIDKTNFIKRPFP--KQYEF--SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMP 137 (582)
Q Consensus 64 githv--ir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p--~~~~~--~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~ 137 (582)
+.+|+ +.|.+|..+.+++..++++||+ ..| .+.|+ +.++++|.|||||++.. .
T Consensus 345 ~~~~~iyV~g~~h~~~~~~~~~~~~alG~------~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~---------------v 403 (592)
T 1iq0_A 345 KAEETINVVDVRQSHPQALVRAALALAGY------PALAEKAHHLAYETVLLEGRQMSGRKGLA---------------V 403 (592)
T ss_dssp CCSEEEEEEESSSCCCHHHHHHHHHHTTC------HHHHTTEEEEEECCEEETTBCSCC----C---------------C
T ss_pred CCCEEEEEEeccHHHHHHHHHHHHHHcCC------CCCCCcEEEEEeeEEEcCCCcccCCCCCc---------------c
Confidence 77888 7999999999999999999999 432 56677 45889999999998532 2
Q ss_pred cHHHHHHcC------------------------CCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 138 TLIGMRRRG------------------------YTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 138 tl~~lr~~G------------------------~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
|+..|.+.| +-+++|+=|+.+. ...++..|||+++.+++.
T Consensus 404 ~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~d~~~~~~~ 467 (592)
T 1iq0_A 404 SVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp BHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECHHHHHCSSS
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecHHHHHHHhc
Confidence 555555554 6667787777765 446788888888876654
No 64
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.38 E-value=0.00019 Score=76.55 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=77.3
Q ss_pred CCCCcEEEEecCCCccccCCee-eeecccc----------cccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCC
Q psy9414 25 NMRDPIIYRIRHVNHYRTNNNW-CIYPMYD----------YAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNF 93 (582)
Q Consensus 25 ~~~D~v~~R~~~~~H~~~g~k~-~~~P~Y~----------fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~ 93 (582)
..+|++++++...-+|.--..| ..+|.++ |..++|-|..|+.|+. -|..+.+.|...+ .|.
T Consensus 201 ~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~---~H~~~~~a~~~a~--~g~--- 272 (414)
T 3c8z_A 201 DQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIF---PHHEYSAAHAESV--TGE--- 272 (414)
T ss_dssp STTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTT---THHHHHHHHHHHH--HCC---
T ss_pred CcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEecccccc---HHHHHHHHHHHHh--cCC---
Confidence 3469999998653343211111 1345444 2347788888887764 2444444443322 365
Q ss_pred CCCCCC--ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHH
Q psy9414 94 IKRPFP--KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE 171 (582)
Q Consensus 94 ~~~~~p--~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~ 171 (582)
.++ ++.|.+.|.++|.|||||+. ...|+..+.++||.|+++|-|+.. +-..++..|+++
T Consensus 273 ---~~~~~~~~h~g~v~~~G~KMSKS~G---------------N~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~ 333 (414)
T 3c8z_A 273 ---RRFARHYVHTGMIGWDGHKMSKSRG---------------NLVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNE 333 (414)
T ss_dssp ---SCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHH
T ss_pred ---CCcCeEEEEcCEEecCCeEcccccC---------------CcCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHH
Confidence 333 35666899999999999985 345899999999999999999998 777788999999
Q ss_pred HHHHHHHHhhhc
Q psy9414 172 ILEQALRDDLDI 183 (582)
Q Consensus 172 ~l~~~~~~~l~~ 183 (582)
.|...++. ++.
T Consensus 334 ~l~~~~~~-l~~ 344 (414)
T 3c8z_A 334 VLDEANAR-LAR 344 (414)
T ss_dssp HHHHHHHH-HHH
T ss_pred HHHHHHHH-HHH
Confidence 88887664 443
No 65
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.36 E-value=4.9e-05 Score=82.12 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=79.1
Q ss_pred CCcEEEEecCCCccccCCeeeeeccc---ccccccccccCCCcEE--ecCcccccChHHHHHHHHHcCCCCCCCCCCCce
Q psy9414 27 RDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDAIENITHS--ICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQ 101 (582)
Q Consensus 27 ~D~v~~R~~~~~H~~~g~k~~~~P~Y---~fa~~vdD~~~githv--ir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~ 101 (582)
.|.|+.|.+++ ||| |.|..+++..++.+++ +.|.||..+.+++..++++||+ .++.+
T Consensus 206 ~~~vl~ksDG~------------~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~------~~~~~ 267 (464)
T 3fnr_A 206 KDRVIIREDGR------------GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGF------DSNNL 267 (464)
T ss_dssp SCEEEECTTSC------------BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTC------CGGGE
T ss_pred CceEEEeCCCc------------eehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCC------Cccce
Confidence 37899999986 788 5899999999999999 5999999999999999999999 55544
Q ss_pred --eEeecccC--CCc--cccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 102 --YEFSRLNL--THT--ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 102 --~~~~~l~~--~~~--~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
.+|+.+++ +|. |||||++.. .++..+.+. +-+++++-|+... ...++..|||+.+.+
T Consensus 268 ~h~~~g~V~l~~dG~~~KMSKr~Gn~---------------v~l~dll~~-~g~dalRy~~l~~-~~~~d~~Fd~~~~~~ 330 (464)
T 3fnr_A 268 EIILAQMVSLLKDGEPYKMSKRAGNF---------------ILMSDVVDE-IGSDALRYIFLSK-KCDTHLEFDISDLQK 330 (464)
T ss_dssp EEEEECCEEEEETTEECCC---CCSS---------------CBHHHHHHH-HCHHHHHHHTTSS-CTTSCEEEEGGGGGC
T ss_pred EEEEeeeEEecCCCcccCCcCcCCCC---------------CCHHHHHhh-ccHHHHHHHHHhc-CCCCCCccCHHHHHH
Confidence 34556654 664 999998532 245554433 4467776555443 334556666665543
No 66
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.28 E-value=4.6e-05 Score=75.86 Aligned_cols=50 Identities=22% Similarity=0.415 Sum_probs=35.5
Q ss_pred eeccccccccchhhhccccccee----c-------------cccc------ce-e---ecccCCccccchhhcCccC
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAII----G-------------AAKH------MH-T---IFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~----~-------------~~~~------~~-~---i~~~~C~~Cg~Cv~~CP~~ 497 (582)
..+.+.|++||.|+.+||..++. + +... .. . .....|+.||.|+++||.+
T Consensus 152 ~~~~~~Ci~CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 152 LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp TTTTTTCCCCCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTC
T ss_pred hHhHHhchhhCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCccccchhhhcCCC
Confidence 34678999999999999986531 0 1100 00 1 1346899999999999998
No 67
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=97.27 E-value=0.00015 Score=53.97 Aligned_cols=25 Identities=40% Similarity=0.937 Sum_probs=22.3
Q ss_pred ceeccccccccchhhhcccccceec
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
..++.+.|++||.|+.+||++||.+
T Consensus 30 ~~~~~~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 30 YVIDADTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CEECTTTCCCCCHHHHTCTTCCEEE
T ss_pred EEeccccCcChhChHHHccccceec
Confidence 4678899999999999999999875
No 68
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=97.23 E-value=3.6e-05 Score=65.71 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred ceeccccccccchhhhcccccceecccccceeecccCCc-cccchhhcCccCceeeeecC
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCT-GCDLCIKKCPVNCISMIEVT 505 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~~~~i~~~~C~-~Cg~Cv~~CP~~AI~~~~~~ 505 (582)
+.++.++|++||.|+.+||++||.+.......+...... .--.....||.+|+.+....
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~~~~~~~d~~~~~~~~~~~ga~~~g~~~ 91 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVEAIYYEDDVPDQWSSYAQANADFFAELGSPGGASKVGQTD 91 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTCCEEEGGGCCGGGTTHHHHHHHTTTTTCCCSCHHHHCSCS
T ss_pred EEEeCCcCcchhhHHHhCCccCEEecCCChHHHHHHHHhchHHHhhcCCCcceEEeecCC
Confidence 567899999999999999999998754321111000000 00113478999999887543
No 69
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=97.17 E-value=3.3e-05 Score=88.67 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=39.3
Q ss_pred eeccccccccchhhhcccccceecc-----ccc---ceeecccCCccccchhhcCccCceee
Q psy9414 448 IIKENKCIGCTLCIQSCPVDAIIGA-----AKH---MHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 448 ~id~~~Ci~Cg~Cv~~CP~~ai~~~-----~~~---~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
..+.++|++||.|+.+||.++.... ..+ ........|+.||.|+.+||++++..
T Consensus 411 ~~~~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 411 VNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTCCCHH
T ss_pred HHhHHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCCCChH
Confidence 4467899999999999999763211 011 01223568999999999999998654
No 70
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=97.17 E-value=0.00023 Score=75.51 Aligned_cols=54 Identities=30% Similarity=0.577 Sum_probs=49.3
Q ss_pred cccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccc
Q psy9414 380 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIP 433 (582)
Q Consensus 380 ~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~ 433 (582)
.+||+++|+.||+++|+.|+++|+++.+..+.||.++...+.+++..+..++..
T Consensus 10 ~~LP~~nCg~CG~~~C~~fA~ai~~G~a~~~~Cp~~~~~~~~~la~~lappI~~ 63 (446)
T 4djd_C 10 KQLPKKNCGECGTPTCLAFAMNLASGKASLDSCPYVSDAAREALDAAAAPPIAK 63 (446)
T ss_dssp TTSCCCCCCTTSSSSHHHHHHHHHHTCSCGGGCSCSCHHHHHHHHHTTSCSSCE
T ss_pred hcCCCCCCCCCCccCHHHHHHHHHcCCCCcccCCCCcHHHHHHHHhhccCCcee
Confidence 468999999999999999999999999999999999999999999988876543
No 71
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.04 E-value=0.00061 Score=74.32 Aligned_cols=133 Identities=12% Similarity=0.129 Sum_probs=88.0
Q ss_pred CCCCcEEEEe--cCC-CccccCC-eeeeec----cccccccccc---ccCCCcEEecCcccccCh-HHHHHHHHHcCCCC
Q psy9414 25 NMRDPIIYRI--RHV-NHYRTNN-NWCIYP----MYDYAHPISD---AIENITHSICTLEFQDHR-PFYEWILNKIDKTN 92 (582)
Q Consensus 25 ~~~D~v~~R~--~~~-~H~~~g~-k~~~~P----~Y~fa~~vdD---~~~githvir~~e~~~~~-~~~~~l~~~l~~~~ 92 (582)
.++||.+-|. ... =||+-++ .|.+|. ...|++++.| ..-.+++.+.|.|+.-.- ........++|+
T Consensus 200 ~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~-- 277 (497)
T 2csx_A 200 GLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGY-- 277 (497)
T ss_dssp CCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred CCccccccccCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCC--
Confidence 4789999993 311 1444443 455542 1134455544 233677888899987611 111123456788
Q ss_pred CCCCCCCc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHH
Q psy9414 93 FIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIE 171 (582)
Q Consensus 93 ~~~~~~p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~ 171 (582)
.+|. ++++|.+.++|.|||||+.+. .++..+.+ +|.++|+|-|+...+-..++..|+++
T Consensus 278 ----~~~~~~~~~G~v~~~G~KMSKS~GN~---------------i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~ 337 (497)
T 2csx_A 278 ----ELPKKVFAHGWWTVEGKKMSKTLGNV---------------VDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKK 337 (497)
T ss_dssp ----CCCSCEEEECCEESSSSBCCTTTTCC---------------CCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHH
T ss_pred ----CCCcEEEECcEEEeCCceeCCcCCCC---------------CCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChH
Confidence 5565 778899888999999998532 34555554 58899999999998877889999999
Q ss_pred HHHHHHHH
Q psy9414 172 ILEQALRD 179 (582)
Q Consensus 172 ~l~~~~~~ 179 (582)
.+....+.
T Consensus 338 ~l~~~~~~ 345 (497)
T 2csx_A 338 AILNRING 345 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98775543
No 72
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.98 E-value=0.00035 Score=55.84 Aligned_cols=27 Identities=37% Similarity=0.727 Sum_probs=23.8
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.++.+.|++||.|+.+||++||.+.
T Consensus 31 ~~~~~~~~C~~Cg~C~~~CP~~ai~~~ 57 (77)
T 1bc6_A 31 QYYIDPDVCIDCGACEAVCPVSAIYHE 57 (77)
T ss_dssp SEEECTTTCCSCCSHHHHSGGGSSEET
T ss_pred cEEECcccCcCccCCHhhcCccceEec
Confidence 356789999999999999999999864
No 73
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=96.96 E-value=0.00048 Score=55.50 Aligned_cols=27 Identities=33% Similarity=0.738 Sum_probs=23.9
Q ss_pred ceeccccccccc------hhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCT------LCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg------~Cv~~CP~~ai~~~~ 473 (582)
..++.++|++|+ .|+.+||++||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (80)
T 1rgv_A 30 YVIDPTKCSECVGAFDEPQCRLVCPADCIPDNP 62 (80)
T ss_dssp CEECTTTCCTTTTTCSSCHHHHHCSSCCCCBCG
T ss_pred eEEcchhCcCCCCcCCccHHHHhcCcccEEecC
Confidence 467889999999 999999999998754
No 74
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.92 E-value=0.00036 Score=77.97 Aligned_cols=60 Identities=42% Similarity=0.851 Sum_probs=48.4
Q ss_pred CCcccceecccccc--ccc--hhhhcccc-----cceecccc-cceeecccCCccccchhhcCccCceee
Q psy9414 442 KSRCCAIIKENKCI--GCT--LCIQSCPV-----DAIIGAAK-HMHTIFSKLCTGCDLCIKKCPVNCISM 501 (582)
Q Consensus 442 ~~~~~~~id~~~Ci--~Cg--~Cv~~CP~-----~ai~~~~~-~~~~i~~~~C~~Cg~Cv~~CP~~AI~~ 501 (582)
+...+.++|.++|- .|+ .|.+.||. .+|.+... +...+....|++||.|+..||..||.+
T Consensus 17 ~~~~~~~~~~~~c~p~~c~~~~c~~~cp~~~~~~~~~~~~~~~~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 17 RKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp CCEEEEECCGGGCCTTTSSSCHHHHHCHHHHTTCCSEEEETTTTEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred ccceEEEeeccccCCCCCChhhHhhhCCCCcCCceEEEEcCCCCcceeeecccCccccccCCCCcceEEE
Confidence 34457789999995 695 99999996 25655443 556788899999999999999999888
No 75
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=96.85 E-value=0.00048 Score=55.83 Aligned_cols=28 Identities=39% Similarity=0.901 Sum_probs=24.5
Q ss_pred cceeccccccccc------hhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCT------LCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg------~Cv~~CP~~ai~~~~ 473 (582)
.+.++.++|++|+ .|+.+||++||.+..
T Consensus 29 ~~~i~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 3eun_A 29 TYVIEPSLCTECVGHYETSQCVEVCPVDAIIKDP 62 (82)
T ss_dssp SEEECGGGCCTTTTTCSSCHHHHHCTTCCEEECG
T ss_pred ceEEchhhcCCCCCCCCccHHHHhCCccceEEcC
Confidence 3567889999999 999999999998764
No 76
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=96.83 E-value=0.00053 Score=55.52 Aligned_cols=27 Identities=41% Similarity=0.765 Sum_probs=23.9
Q ss_pred ceeccccccccc------hhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCT------LCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg------~Cv~~CP~~ai~~~~ 473 (582)
..++.++|++|+ .|+.+||++||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~Ai~~~~ 62 (82)
T 2fgo_A 30 YVIDPNLCTECVGHYDEPQCQQVCPVDCIPLDD 62 (82)
T ss_dssp EEECTTTCCTTTTTCSSCHHHHHCTTCCCCBCT
T ss_pred EEEEchhCccCCCcCCCCHhHhhCCcccEEccC
Confidence 467889999999 999999999998754
No 77
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=96.82 E-value=0.00027 Score=66.15 Aligned_cols=28 Identities=36% Similarity=0.673 Sum_probs=24.4
Q ss_pred cceeccccccccchhhhcccccceeccc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
...++.++|++||.|+.+||++||.+..
T Consensus 90 ~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 90 VYEINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp EEEEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred eeecCCCcCcChhChhhhCCccceEecC
Confidence 4467889999999999999999998753
No 78
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=96.73 E-value=0.00093 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.826 Sum_probs=23.8
Q ss_pred ceeccccccccc------hhhhcccc-cceeccc
Q psy9414 447 AIIKENKCIGCT------LCIQSCPV-DAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg------~Cv~~CP~-~ai~~~~ 473 (582)
..++.++|++|+ .|+.+||+ +||.+..
T Consensus 30 ~~~~~~~C~~C~~~~~~~~C~~~CP~~~Ai~~~~ 63 (85)
T 2zvs_A 30 YEINSDKCTECVGHYETPTCQKVCPIPNTIVKDP 63 (85)
T ss_dssp CEECGGGCCTTTTTCSSCHHHHHCSSCCEEECTT
T ss_pred eEEeChhccCCCCcCCccHhhHhCcCCCCEEecC
Confidence 467889999999 99999999 9998754
No 79
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=96.68 E-value=0.00041 Score=63.41 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.3
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.++|++||.|+.+||++||.+.
T Consensus 40 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (150)
T 1jnr_B 40 YNREPDMCWECYSCVKMCPQGAIDVR 65 (150)
T ss_dssp EESCGGGCCCCCHHHHHCTTCCEEEC
T ss_pred eeeCcccCcCHhHHHHhCCccceEec
Confidence 46788999999999999999999865
No 80
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=96.66 E-value=0.0004 Score=55.69 Aligned_cols=27 Identities=37% Similarity=0.892 Sum_probs=23.8
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
+.++.+.|++||.|+.+||++||.+..
T Consensus 32 ~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 58 (78)
T 1h98_A 32 FYIHPEECIDCGACVPACPVNAIYPEE 58 (78)
T ss_dssp EEECTTTCCCCCTHHHHCTTCCEEEGG
T ss_pred EEECcccCCcHhHHHHhCCccceEecc
Confidence 467899999999999999999998643
No 81
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=96.64 E-value=0.00034 Score=74.81 Aligned_cols=54 Identities=30% Similarity=0.564 Sum_probs=2.4
Q ss_pred cccccccCCcCCCCCchhHHHHHHcccccCCCCCCCchHHHHHHHHhhCCCccc
Q psy9414 380 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIP 433 (582)
Q Consensus 380 ~glp~~~C~~Cg~~gC~~~a~~l~~~~~~c~~Cp~~~~~~l~~l~~~~~~~~~~ 433 (582)
.+||++||++||+++|..|+++|+.+.+..+.||.++.....+++..++.+...
T Consensus 10 ~~LP~~nCg~CG~p~C~~~A~ai~~g~a~i~~Cp~g~ee~~ekLaellap~ike 63 (445)
T 2h9a_A 10 KHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPVAL 63 (445)
T ss_dssp -------------------------------------------------CCSCC
T ss_pred HhCCCCCCccCCcccHHHHHHHHHcCCCCCCCCCcCcHHHHHHHHhcccccccc
Confidence 478999999999999999999999999999999999988888888887765433
No 82
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.61 E-value=0.00048 Score=64.03 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.4
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.+|.++|++||.|+.+||++||.+.
T Consensus 38 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 64 (166)
T 3gyx_B 38 AFNQEPEACWECYSCIKICPQGAITAR 64 (166)
T ss_dssp EEESCGGGCCCCCHHHHHCSSCCEEEC
T ss_pred eEecCcccCcccChHhHhCCccceEEe
Confidence 345788999999999999999999764
No 83
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=96.24 E-value=0.0031 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred ccccccccchhhhcccccceecc
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
+.+.|++|+.|+.+||++||.+.
T Consensus 37 ~~~~c~~C~~C~~~CP~~Ai~~~ 59 (60)
T 1rof_A 37 PETDLPCAKDAADSCPTGAISVE 59 (60)
T ss_dssp SSCCSTTHHHHHHHCTTCCEECC
T ss_pred chhhHHHHHHHHHhCCHhHEEEe
Confidence 37899999999999999999763
No 84
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=96.05 E-value=0.00079 Score=70.56 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=25.3
Q ss_pred cccceeccccccccchhhhcccccceecc
Q psy9414 444 RCCAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 444 ~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.+.+|.++|++||.|+.+||.+||...
T Consensus 231 ~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~ 259 (366)
T 3mm5_B 231 NKTIKVDVEKCMYCGNCYTMCPGMPLFDP 259 (366)
T ss_dssp TTEEEECGGGCCCCCHHHHHCTTCCCCCT
T ss_pred CCeEEEehhhCCCcchHHHhCCHhhcccc
Confidence 34678999999999999999999998654
No 85
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=95.88 E-value=0.0021 Score=68.63 Aligned_cols=22 Identities=36% Similarity=0.931 Sum_probs=21.0
Q ss_pred ccccccccchhhhcccccceec
Q psy9414 450 KENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
+.++|++||.|+.+||++||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~Ai~~ 83 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPENAIYE 83 (421)
T ss_dssp CGGGCCCCCTTGGGCTTCCEEE
T ss_pred ChhhCCchhhHHHhhCcCCccc
Confidence 8899999999999999999987
No 86
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=95.81 E-value=0.0021 Score=64.64 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=32.3
Q ss_pred cccccccchhhhcccccceec-----------------ccccc----------eeecccCCccccchhhcCccC
Q psy9414 451 ENKCIGCTLCIQSCPVDAIIG-----------------AAKHM----------HTIFSKLCTGCDLCIKKCPVN 497 (582)
Q Consensus 451 ~~~Ci~Cg~Cv~~CP~~ai~~-----------------~~~~~----------~~i~~~~C~~Cg~Cv~~CP~~ 497 (582)
...||.||.|..+||...... +.... .......|..||.|..+||.+
T Consensus 179 ~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 179 LYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKH 252 (282)
T ss_pred hhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccChhhCCccccCcCC
Confidence 457999999999999753210 00000 011246799999999999988
No 87
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.0023 Score=67.62 Aligned_cols=64 Identities=8% Similarity=0.010 Sum_probs=46.8
Q ss_pred ccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCC-Cccccccchh
Q psy9414 51 MYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLT-HTITSKRKLL 120 (582)
Q Consensus 51 ~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~-~~~lSKr~~~ 120 (582)
+|-.-.+.|..+++++|+++|.|+..|...+..+++.||+ ..|...+.+.| +++ |+|||||...
T Consensus 169 ~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~------~~p~~l~~pll~gl~~G~KMSKS~~n 234 (394)
T 2dlc_X 169 IYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY------KKRAHLMNPMVPGLAQGGKMSASDPN 234 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC------CCCEEEEECCCCCCC----------C
T ss_pred echhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCC------CCCEEEecccccCCCCCCcCCCCCCC
Confidence 3444555677779999999999999999999999999999 89999998865 678 9999999753
No 88
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=95.46 E-value=0.0042 Score=52.27 Aligned_cols=26 Identities=38% Similarity=0.773 Sum_probs=22.9
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..++.+.|++||.|+.+||++||.+.
T Consensus 76 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~ 101 (103)
T 1xer_A 76 DPVNEQACIFCMACVNVCPVAAIDVK 101 (103)
T ss_dssp ECTTGGGCCCCCHHHHHCTTCCEEEC
T ss_pred eecCcccccChhhHHHhccccceEec
Confidence 45688899999999999999999864
No 89
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=95.41 E-value=0.019 Score=63.40 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=73.1
Q ss_pred cccCCCcEEecCccccc-ChHHHHHHHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcc
Q psy9414 60 DAIENITHSICTLEFQD-HRPFYEWILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMP 137 (582)
Q Consensus 60 D~~~githvir~~e~~~-~~~~~~~l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~ 137 (582)
|....+.|++ |.|+.. ++-.+-.++.++|+ ..| .++.++.+.++|.|||||+.+ ..
T Consensus 297 ~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~------~~p~~v~~hg~v~~~G~KMSKS~GN---------------vv 354 (560)
T 3h99_A 297 DSTAELYHFI-GKDIVYFLSLFWPAMLEGSNF------RKPSNLFVHGYVTVNGAKMSKSRGT---------------FI 354 (560)
T ss_dssp TCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTB------CCCSEEEEECCEEETTEECCTTTTC---------------CC
T ss_pred CCCceeEEEe-ccccchhHHHHHHHHHHhCCC------CCCcEEEEEeEEEeCCeeccccCCC---------------cC
Confidence 4445567887 999875 22344458888998 556 344567888899999999853 33
Q ss_pred cHHHHHHcCCCHHHHHHHHHHhcccC-CCCcccHHHHHH-HHHHhhhc
Q psy9414 138 TLIGMRRRGYTPESIKLFCKRIGVSK-SDSWINIEILEQ-ALRDDLDI 183 (582)
Q Consensus 138 tl~~lr~~G~~p~ai~~~~~~~G~s~-~~~~~~~~~l~~-~~~~~l~~ 183 (582)
++..+.+. |.++|+|=|+...+... .+..|+++.+.. .|++.+++
T Consensus 355 ~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~ 401 (560)
T 3h99_A 355 KASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNK 401 (560)
T ss_dssp BHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCC
T ss_pred CHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 67776666 89999999999987755 788999998764 56655444
No 90
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=95.37 E-value=0.0061 Score=46.41 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=22.2
Q ss_pred eeecccCCccccchhhcCccCceeeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
..++.++|++||.|+.+|| ++|.+.+
T Consensus 4 ~~id~~~C~~Cg~C~~~CP-~~~~~~~ 29 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAP-GAFAMDP 29 (64)
T ss_dssp CEECSTTCCSCCHHHHHCT-TTEEECS
T ss_pred EEEccccCCCchHHHHhCC-ccEeEcC
Confidence 3577889999999999999 9987754
No 91
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=95.29 E-value=0.0065 Score=48.31 Aligned_cols=26 Identities=27% Similarity=0.919 Sum_probs=22.8
Q ss_pred eecccCCccccchhhcCccCceeeee
Q psy9414 478 TIFSKLCTGCDLCIKKCPVNCISMIE 503 (582)
Q Consensus 478 ~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 503 (582)
.++.+.|++||.|+.+||++||.+.+
T Consensus 4 ~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 4 VKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp EEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred cccCCcCcChhHHHHHCCcccccccc
Confidence 45678999999999999999998765
No 92
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=95.15 E-value=0.0044 Score=63.77 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=57.3
Q ss_pred ecccccccccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccc
Q psy9414 49 YPMYDYAHPISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRK 118 (582)
Q Consensus 49 ~P~Y~fa~~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~ 118 (582)
.-+|-+..+.|+.+.+++||++|.|...+...+..|.+.||. ..|...+.+.| .++|+||||+.
T Consensus 155 ~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~------~~p~~l~~pll~~l~G~KMSKS~ 219 (323)
T 2cyb_A 155 QMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------SSPVCLHTPILVGLDGQKMSSSK 219 (323)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC------CCCEEEEECCCBCTTSSBCCTTT
T ss_pred hhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCC------CCceEEecCcccCCCCCcccCCc
Confidence 346777788899999999999999999999999999999999 88999999866 67899999995
No 93
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=95.11 E-value=0.0083 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred eccccccccchhhhcccccceec
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
++.+.|++|+.|+.+||++||.+
T Consensus 36 ~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 36 APDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred cChhhhhHHHHHHHhCCHhhEEc
Confidence 57889999999999999999875
No 94
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.006 Score=68.10 Aligned_cols=30 Identities=43% Similarity=0.868 Sum_probs=26.0
Q ss_pred Ccccceeccccccccchhhhcccccceecc
Q psy9414 443 SRCCAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 443 ~~~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..+.+.+.++.|+|||.|++-||++||.+.
T Consensus 44 ~~~~~~i~~~~c~~~~~~~~~cp~~~i~i~ 73 (608)
T 3j16_B 44 TSKIAFISEILCIGCGICVKKCPFDAIQII 73 (608)
T ss_dssp TTTEEEECTTTCCCCCHHHHHCSSCCEEEE
T ss_pred CCCceEEehhhccccccccccCCccceEEe
Confidence 445678999999999999999999999763
No 95
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=95.07 E-value=0.0074 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.0
Q ss_pred eec--cccccccchhhhcccccceec
Q psy9414 448 IIK--ENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 448 ~id--~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.++ .+.|++|+.|+.+||++||.+
T Consensus 32 ~~~~~~~~C~~C~~C~~~CP~~Ai~~ 57 (58)
T 1f2g_A 32 VVINPDSDLDCVEEAIDSCPAEAIVR 57 (58)
T ss_dssp EESCTTCCSTHHHHHHHTCSSCCCBC
T ss_pred EeCCCccchHHHHHHHhhCChhhEEe
Confidence 455 789999999999999999875
No 96
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=95.00 E-value=0.051 Score=58.41 Aligned_cols=137 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred EEEEeccCCCCCCCCcEEEEecCCCccccCCee-eeeccccccccccc-ccCC--CcEEecCcc----cccChHHHHHHH
Q psy9414 14 RVKINMKSKNINMRDPIIYRIRHVNHYRTNNNW-CIYPMYDYAHPISD-AIEN--ITHSICTLE----FQDHRPFYEWIL 85 (582)
Q Consensus 14 r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~-~~~P~Y~fa~~vdD-~~~g--ithvir~~e----~~~~~~~~~~l~ 85 (582)
|+..+-.-.|| .|+++++....-+|.=-+.| .+.|-+|+-|.... ...| ++-..-|.| |+.|.-.|..-
T Consensus 171 r~~~~~~K~~p--~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a- 247 (462)
T 3tqo_A 171 RVEVSDSKRDP--LDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEA- 247 (462)
T ss_dssp ------CCSST--TCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHH-
T ss_pred ccccccccCCc--cccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHH-
Confidence 43333334445 59999998765566433444 46787877664332 2223 222233444 34444444332
Q ss_pred HHcCCCCCCCCCCCce-eEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCC
Q psy9414 86 NKIDKTNFIKRPFPKQ-YEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKS 164 (582)
Q Consensus 86 ~~l~~~~~~~~~~p~~-~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~ 164 (582)
+.|. ..+.+ .|.+.|+.+|.|||||..+ ..|+..+.+. |.|++|+-|+..... .+
T Consensus 248 -~~g~------p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~y-r~ 303 (462)
T 3tqo_A 248 -GEEK------PFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHY-RN 303 (462)
T ss_dssp -HHSS------CCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCT-TS
T ss_pred -HcCC------CcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCC-CC
Confidence 2354 33444 4556899999999999853 4478887764 999999988887543 56
Q ss_pred CCcccHHHHHHHH
Q psy9414 165 DSWINIEILEQAL 177 (582)
Q Consensus 165 ~~~~~~~~l~~~~ 177 (582)
+..|+.+.|....
T Consensus 304 ~l~fs~~~l~~a~ 316 (462)
T 3tqo_A 304 PLSYSKENLENGR 316 (462)
T ss_dssp CEEECHHHHHHHH
T ss_pred CcCcCHHHHHHHH
Confidence 7788888877643
No 97
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=94.81 E-value=0.0071 Score=67.38 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=60.0
Q ss_pred CCceEEEEEEeccCCCCCCCCcEEEEecCCCccccCCeeeeeccc---ccccccccc-cCCCcEEe--cCcccccChHHH
Q psy9414 8 DGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMY---DYAHPISDA-IENITHSI--CTLEFQDHRPFY 81 (582)
Q Consensus 8 ~g~~~~r~k~d~~~~n~~~~D~v~~R~~~~~H~~~g~k~~~~P~Y---~fa~~vdD~-~~githvi--r~~e~~~~~~~~ 81 (582)
+|..++++.-- +..+.+.|+.|.+++ |+| |||..++.+ ..+.+++| -|.+|..+.++.
T Consensus 319 dGa~~~~~~~~----g~~~d~~v~~KsDG~------------~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~ 382 (607)
T 1f7u_A 319 KGAVLIDLTKF----NKKLGKAIVQKSDGT------------TLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQF 382 (607)
T ss_dssp TTEEEEEGGGT----CTTTCEEEEECTTSC------------CCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHH
T ss_pred CCcEEEEeccc----CCCCCceeEeccCCC------------cCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHH
Confidence 57777654321 223334688887775 555 677777776 46999999 999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceeEeecccCCCccccccch
Q psy9414 82 EWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKL 119 (582)
Q Consensus 82 ~~l~~~l~~~~~~~~~~p~~~~~~~l~~~~~~lSKr~~ 119 (582)
..+.++||+ ..+.++.+-.+.+. .+||||++
T Consensus 383 ~~~~~~lG~------~~~~~~~Hv~fg~v-~kMSkR~G 413 (607)
T 1f7u_A 383 FEILKQMGF------EWAKDLQHVNFGMV-QGMSTRKG 413 (607)
T ss_dssp HHHHHHTTC------GGGGGEEEECCCCE-ESCCGGGT
T ss_pred HHHHHHcCC------CcCcEEEEeccccc-ccccCCCC
Confidence 999999999 54543333221111 26999985
No 98
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=94.64 E-value=0.013 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=21.6
Q ss_pred eeecccCCccccchhhcCccCceeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..++.++|++||.|+.+|| +++.+.
T Consensus 4 v~vd~~~CigCg~C~~~CP-~~~~~~ 28 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAP-DIYDYD 28 (81)
T ss_dssp EEECTTTCCCCSHHHHHCT-TTEEEC
T ss_pred EEEecccCcccChhhHhCc-hheeeC
Confidence 3578899999999999999 888764
No 99
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=94.41 E-value=0.0081 Score=63.76 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=25.2
Q ss_pred ccceeccccccccchhhhcccccceeccccc
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAKH 475 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~~ 475 (582)
+.+.+|.++|++||.|+.+||.+++.....+
T Consensus 277 ~~~~id~~~Ci~Cg~Ci~~CP~~~~~~~~~g 307 (418)
T 3mm5_A 277 KELTIDNRECVRCMHCINKMPKALKPGDERG 307 (418)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTTEECCSSEE
T ss_pred ceeEEChhhcCccChhHHhCcHhhccCCCCC
Confidence 3678999999999999999999876644333
No 100
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=94.14 E-value=0.065 Score=58.17 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=67.1
Q ss_pred CCcEEecCcccccChH-HHHHHHHHcCCCCCCCCCCCc-eeEeecccC-CCccccccchhhhccccccCCCCCCCcccHH
Q psy9414 64 NITHSICTLEFQDHRP-FYEWILNKIDKTNFIKRPFPK-QYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLI 140 (582)
Q Consensus 64 githvir~~e~~~~~~-~~~~l~~~l~~~~~~~~~~p~-~~~~~~l~~-~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~ 140 (582)
+.+.-+-|.|+.-.-. ....+..++|+ .+|. ++++|.+.. +|.|||||+++. .++.
T Consensus 251 p~di~~~G~D~~~fh~~~~~a~~~~~g~------~~~~~v~~~G~v~~~~G~KMSKS~GN~---------------i~p~ 309 (500)
T 2d5b_A 251 PHAWHLIGKDILKPHAVFWPTMLKAAGI------PMYRHLNVGGFLLGPDGRKMSKTLGNV---------------VDPF 309 (500)
T ss_dssp GGEEEEEEGGGHHHHHTHHHHHHHHHTC------CCCSEEEEECCEECTTSSCCCTTTTCC---------------CCHH
T ss_pred CCeEEEEeechhhhHHHHHHHHHHHcCC------CCCcEEEECceEEeCCCCcccccCCCC---------------CCHH
Confidence 4567788999876111 11124457788 5665 678899888 899999998532 3455
Q ss_pred HHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 141 GMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 141 ~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.+.+ .|.++++|-|+...+-..++..|+++.+.....
T Consensus 310 d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 310 ALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp HHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred HHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 5544 478999999999888778899999998877544
No 101
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=93.69 E-value=0.027 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=21.2
Q ss_pred eeecccCCccccchhhcCccCceeee
Q psy9414 477 HTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 477 ~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
..++.++|++||.|+.+||. +|.+.
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~-~~~~~ 28 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPD-VFEMN 28 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTT-TEEEC
T ss_pred EEECcccCcCchHHHHhCCc-eEEEC
Confidence 35778899999999999995 88774
No 102
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=93.08 E-value=0.012 Score=65.30 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=24.5
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.+|.+.|+.||.|..+||+++|...
T Consensus 545 ~~~i~~~~Ci~C~~C~~~cp~~~i~~~ 571 (584)
T 2gmh_A 545 RLQINAQNCVHCKTCDIKDPSQNINWV 571 (584)
T ss_dssp EEEECGGGCCCCCHHHHHCTTCCEEEC
T ss_pred EEEEeCCCCcCCCCchhhCCCCCceeE
Confidence 578999999999999999999999654
No 103
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=93.05 E-value=0.035 Score=58.37 Aligned_cols=27 Identities=22% Similarity=0.666 Sum_probs=24.5
Q ss_pred cceeccccccccchhhhcccccceecc
Q psy9414 446 CAIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 446 ~~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
.+.+|.++|++||.|+.+||.+||...
T Consensus 250 ~v~id~~~Ci~Cg~C~~~CP~~Ai~~~ 276 (386)
T 3or1_B 250 SVAINNDRCMYCGNCYTMCPALPLSDG 276 (386)
T ss_dssp EEEECTTTCCCCCHHHHHCTTCCCCCT
T ss_pred ccccCCCcCCccccHHHhCcHhhCcCC
Confidence 578999999999999999999999764
No 104
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=92.95 E-value=0.012 Score=69.64 Aligned_cols=26 Identities=38% Similarity=1.036 Sum_probs=22.5
Q ss_pred ceeccccccccchhhhcccc-cceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPV-DAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~-~ai~~~~ 473 (582)
..++ +.|++||.|+.+||+ +||.+..
T Consensus 980 ~~~~-~~C~~Cg~C~~~CP~~~Ai~~~~ 1006 (1025)
T 1gte_A 980 PTVT-DTCTGCTLCLSVCPIIDCIRMVS 1006 (1025)
T ss_dssp EEEC-TTCCCCCHHHHHCSSTTTEEEEE
T ss_pred EEeC-ccCCChhHHHhhCCCCCCEEEec
Confidence 4566 899999999999999 9998754
No 105
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=92.21 E-value=0.068 Score=64.22 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=34.2
Q ss_pred ccccccch-hhhcccccceeccccc----ceeecccCCccccchhhcCccCceeee
Q psy9414 452 NKCIGCTL-CIQSCPVDAIIGAAKH----MHTIFSKLCTGCDLCIKKCPVNCISMI 502 (582)
Q Consensus 452 ~~Ci~Cg~-Cv~~CP~~ai~~~~~~----~~~i~~~~C~~Cg~Cv~~CP~~AI~~~ 502 (582)
+.|--|.. .--.||.+.......+ ...++.++|++||.|+.+||.+||...
T Consensus 651 ~~~pv~~~~~dG~~p~G~~~~~k~~i~~~~p~~d~~kCi~Cg~Cv~vCP~~AI~~~ 706 (1231)
T 2c42_A 651 DKLPVSAFEADGRFPLGTSQFEKRGVAINVPQWVPENCIQCNQCAFVCPHSAILPV 706 (1231)
T ss_dssp GGSCGGGSCTTCCBCTTGGGGTCCCCCSEEEEECTTTCCCCCHHHHHCSSCCEEEE
T ss_pred CCCCccccCCCCcccCCcccccccCCCccceEEeCccCCchhhHHHhCCccccccc
Confidence 34544432 2246787754433222 245788999999999999999999763
No 106
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=92.06 E-value=0.031 Score=58.46 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=43.8
Q ss_pred ccccccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchh
Q psy9414 57 PISDAIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 120 (582)
Q Consensus 57 ~vdD~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~ 120 (582)
+.|=.+.+.+|+++|.|...+.....-+++.||+ ..|...+.+.| +++|+|||||...
T Consensus 171 aaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~------~~p~~l~~pll~gldG~KMSKS~~n 229 (372)
T 1n3l_A 171 ALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------SKRVHLMNPMVPGLTGSKMSSSEEE 229 (372)
T ss_dssp HHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTC------CCCEEEEECCCCCSSCC-------C
T ss_pred hccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCC------CCCEEEecCccCCCCcccccCCCCC
Confidence 3444457899999999999999999999999999 88999998865 6789999999754
No 107
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=91.98 E-value=0.037 Score=63.63 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.8
Q ss_pred ccccccchhhhcccccceecc
Q psy9414 452 NKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 452 ~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
..|++||.|+.+||++||...
T Consensus 218 ~~C~~CG~Cv~vCP~gAl~~~ 238 (783)
T 3i9v_3 218 LPSGFSGNITDICPVGALLDL 238 (783)
T ss_dssp CCSTTTTTHHHHCSSSSEEEG
T ss_pred CCCccchhHHhhcccCceecc
Confidence 379999999999999999754
No 108
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=91.25 E-value=0.26 Score=53.36 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=42.5
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 179 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~ 179 (582)
++.|-+.|.++|.||||+..+ ..|+..+.+.||.|++||-|+... --.++..|+.+.|....+.
T Consensus 286 ~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 286 VFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIA 349 (501)
T ss_dssp EEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHH
T ss_pred EEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHh
Confidence 455668999999999999853 458999999999999999888876 4456788888888765443
No 109
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=90.48 E-value=0.097 Score=55.64 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.3
Q ss_pred ccceeccccccccchhhhcccccceecccc
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIGAAK 474 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~~~~ 474 (582)
..+.+|.++|++||.|+.+||..+......
T Consensus 294 ~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~ 323 (437)
T 3or1_A 294 GTLSIDNKNCTRCMHCINTMPRALKIGDER 323 (437)
T ss_dssp TEEEECGGGCCCCSHHHHHCTTTEECCSSE
T ss_pred CEEEEccccCCchhhhHhhCcHhhccCCCC
Confidence 357899999999999999999976654333
No 110
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=90.28 E-value=0.087 Score=58.31 Aligned_cols=27 Identities=30% Similarity=0.776 Sum_probs=23.7
Q ss_pred ceeccccccccchhhhcccccceeccc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGAA 473 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~~ 473 (582)
..++.+.|++||.|+.+||++||....
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~ 209 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVAALSEKS 209 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSSTTEEECC
T ss_pred ceechhhCCcchhHHHhhccCCccccc
Confidence 457889999999999999999998653
No 111
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=90.06 E-value=0.28 Score=53.41 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc
Q psy9414 84 ILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 162 (582)
Q Consensus 84 l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s 162 (582)
+..++|+ ..| .++.+|.+..+|.|||||+++. .++..+.+. |.++++|-|+...+-.
T Consensus 286 ~l~~~g~------~~~~~v~~hG~v~~~G~KMSKS~GN~---------------v~p~d~i~~-~g~DalR~~ll~~~~~ 343 (524)
T 2x1l_A 286 FLMSAGL------PLPKRIFAHGWLLNRGEKMSKSIGNV---------------VDPVNLVDT-FGLDQVRYFLLREVPF 343 (524)
T ss_dssp HHHHHTC------CCCSCEEEECCEEECSCSEETTTEES---------------SCHHHHHHH-HCHHHHHHHHHHHSCT
T ss_pred HHHHCCC------CCCcEEEECcEEEeCCcccCCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCC
Confidence 3455687 555 5677799888999999998532 255565554 7899999999987777
Q ss_pred CCCCcccHHHHHHHHHH
Q psy9414 163 KSDSWINIEILEQALRD 179 (582)
Q Consensus 163 ~~~~~~~~~~l~~~~~~ 179 (582)
.++..|+++.+......
T Consensus 344 ~~d~~fs~~~l~~~~~~ 360 (524)
T 2x1l_A 344 GQDGSYNEDAIIGRVNA 360 (524)
T ss_dssp TSCEEECHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 88999999998776543
No 112
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.29 E-value=0.14 Score=56.91 Aligned_cols=27 Identities=41% Similarity=0.962 Sum_probs=24.2
Q ss_pred ccceeccccccccchhhhcccccceec
Q psy9414 445 CCAIIKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 445 ~~~~id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
+.+.+.++.|+|||.|++.||+.+|.+
T Consensus 60 ~~~~i~e~~c~gc~~~~~~~p~~~i~i 86 (607)
T 3bk7_A 60 YKPIIQEASCTGCGICVHKCPFNAISI 86 (607)
T ss_dssp TEEEECTTTCCCCCHHHHHCSSCCCEE
T ss_pred CcceeeecccCccccccCCCCcceEEE
Confidence 567888999999999999999998876
No 113
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=85.36 E-value=1 Score=49.13 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=48.6
Q ss_pred EEecCcccccC-hHHHHHHHHHcCCCCCCCCCCCc-eeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHH
Q psy9414 67 HSICTLEFQDH-RPFYEWILNKIDKTNFIKRPFPK-QYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRR 144 (582)
Q Consensus 67 hvir~~e~~~~-~~~~~~l~~~l~~~~~~~~~~p~-~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~ 144 (582)
|++ |.|++-. ...+-.++.++|+ .+|. .+.++.+..+|.|||||+++. .++..+.+
T Consensus 280 ~~~-G~D~~~fh~~~~~a~l~a~g~------~~~~~v~~hg~v~~~G~KMSKS~GNv---------------i~p~d~i~ 337 (536)
T 4dlp_A 280 HII-GKDISRFHAVYWPAFLMSAQL------PLPKRVFAHGFLFNRGEKMSKSVGNV---------------IDPFELVE 337 (536)
T ss_dssp EEE-EGGGHHHHHTHHHHHHHHTTC------CCCSCEEEECCEEC---------------------------CCHHHHHH
T ss_pred EEe-echHHHHHHHHHHHHHHHCCC------CCCcEEEeeeeEeeCCceecccCCCC---------------CCHHHHHH
Confidence 444 7776541 2223345567787 4444 344477888999999998533 23444433
Q ss_pred cCCCHHHHHHHHHHhcccCCCCcccHHHHHHHH
Q psy9414 145 RGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 177 (582)
Q Consensus 145 ~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~ 177 (582)
.|-++|+|-|+...+-..++..|+++.+....
T Consensus 338 -~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 369 (536)
T 4dlp_A 338 -RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRT 369 (536)
T ss_dssp -HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred -HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 36789999999987766778999999876643
No 114
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=82.70 E-value=1.8 Score=47.55 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHcCCCCCCCCCCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhccc
Q psy9414 84 ILNKIDKTNFIKRPFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVS 162 (582)
Q Consensus 84 l~~~l~~~~~~~~~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s 162 (582)
++.++|+ .+| ....++.++.+|.|||||+++. .++..+.+. |-++++|-|+...+-.
T Consensus 315 ~L~a~g~------~~~~~v~~hg~v~~~G~KMSKS~GNv---------------V~p~d~i~~-~G~DalR~~ll~~~~~ 372 (564)
T 3kfl_A 315 FLMSAEL------PLPERLVSHGWWTKDHKKISKSLGNA---------------FDPVEKAKE-FGIDALKYFLMRESNF 372 (564)
T ss_dssp HHHHTTC------CCCSCEEEECCEEETTEECCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHHCCS
T ss_pred HHHhCCC------CCCcEEEEcccEeeCCccccccCCCC---------------CCHHHHHHH-cCcHHHHHHHHHcCCc
Confidence 4567787 444 3455578888999999998532 244444432 6799999999997777
Q ss_pred CCCCcccHHHHHHH-HHHhh
Q psy9414 163 KSDSWINIEILEQA-LRDDL 181 (582)
Q Consensus 163 ~~~~~~~~~~l~~~-~~~~l 181 (582)
.++..|+++.+... |.+.+
T Consensus 373 ~~D~~fs~~~~~~~~n~~l~ 392 (564)
T 3kfl_A 373 QDDGDYSDKNMVARLNGELA 392 (564)
T ss_dssp SCCEECCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 78999999988764 44433
No 115
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=81.50 E-value=0.3 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=19.3
Q ss_pred eccccccccchhhhcccccceec
Q psy9414 449 IKENKCIGCTLCIQSCPVDAIIG 471 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~~ai~~ 471 (582)
.+.+.|+.||.|+.+||.++...
T Consensus 450 ~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 450 EIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHHCCCCCHHHHHCTTCCCHH
T ss_pred hchhhccchhhHHHhCCCCCChH
Confidence 34578999999999999988643
No 116
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=80.83 E-value=2.2 Score=46.47 Aligned_cols=64 Identities=13% Similarity=-0.040 Sum_probs=47.1
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRD 179 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~~ 179 (582)
.+++++.|..+|.||||+.++. .+...+.+ +|.++++|=|+.+.+.-.++..|+++.+....+.
T Consensus 310 ~v~~hg~l~~~G~KMSKSlGNv---------------i~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~ 373 (542)
T 3u1f_A 310 KIVAHGWWTKDRKKISKSLGNV---------------FDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNG 373 (542)
T ss_dssp CEEEECCCEETTBCCBTTTTBC---------------CCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHH
T ss_pred eeccccceecCCceeccccCCC---------------CChhHHHh-hcCchHHHHHHHhcCcccccccccHHHHHHHhhh
Confidence 3455678888999999998543 13334332 3779999999998887778999999988765443
No 117
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=79.83 E-value=1.8 Score=49.09 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=49.3
Q ss_pred CCC-ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHH
Q psy9414 97 PFP-KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQ 175 (582)
Q Consensus 97 ~~p-~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~ 175 (582)
..| ..+++|.|..+|.||||++.+. .+...+.+ .|.++++|=|+...+-..++..|+++.+..
T Consensus 327 ~~Pk~v~~hG~v~~~G~KMSKS~GNv---------------V~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~ 390 (722)
T 1rqg_A 327 NLPYDIPANEYLTLEGKKFSTSRNWA---------------IWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKV 390 (722)
T ss_dssp CCCSBCCEECCEEETTEECBTTTTBS---------------CBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHH
T ss_pred CCCCEEEEeeeEEeCCeeeeeeCCCc---------------CCHHHHHH-hcCchHHHHHHHhcCCCCCCCccCHHHHHH
Confidence 445 4667788888999999998533 23444444 588999999999988778899999988765
Q ss_pred H
Q psy9414 176 A 176 (582)
Q Consensus 176 ~ 176 (582)
.
T Consensus 391 ~ 391 (722)
T 1rqg_A 391 R 391 (722)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=77.19 E-value=0.65 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceeccccccccchhhhcccccceecc
Q psy9414 447 AIIKENKCIGCTLCIQSCPVDAIIGA 472 (582)
Q Consensus 447 ~~id~~~Ci~Cg~Cv~~CP~~ai~~~ 472 (582)
+..+..+|++|+.|+.+|| +++...
T Consensus 196 v~~d~~~C~~C~~C~~vCp-~aI~~~ 220 (265)
T 2pa8_D 196 SVKNELSCTLCEECLRYCN-GSIRIS 220 (265)
T ss_dssp EESCGGGCCCCCHHHHHHT-TSEEEE
T ss_pred EEeccccCCCchHHHHhCC-CceEEE
Confidence 3457789999999999999 888764
No 119
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=76.05 E-value=0.78 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.1
Q ss_pred ccccccccchhhhccccccee
Q psy9414 450 KENKCIGCTLCIQSCPVDAII 470 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~ai~ 470 (582)
+...|+.||.|+.+||.++..
T Consensus 202 ~~~~C~~Cg~C~~vCP~gi~~ 222 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKGLNP 222 (238)
T ss_dssp TTTTCCCCCHHHHHCTTCCCH
T ss_pred CCCcCcccchhhhhcCCCCCH
Confidence 467899999999999998753
No 120
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=74.93 E-value=4 Score=46.96 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=52.4
Q ss_pred ceeEeec-ccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSR-LNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~-l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.++-++. |..+|.||||++.+. .+...+.+. |.++++|-|+...+...++..|+++.+...++
T Consensus 577 ~v~~hg~vl~~~G~KMSKS~GNv---------------V~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~ 640 (821)
T 1ile_A 577 NVICHGLILDEKGQKMSKSKGNV---------------VDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVR 640 (821)
T ss_dssp EEEEECCEECTTSSCCCTTTTCC---------------CCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred eEEEEeeEECCCCCCCCccCCCC---------------CCHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH
Confidence 4555665 446899999998532 356666654 89999999999998777899999999988656
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
+.++++
T Consensus 641 ~~~~kl 646 (821)
T 1ile_A 641 DYFLTL 646 (821)
T ss_dssp HTHHHH
T ss_pred HHHHHH
Confidence 666655
No 121
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=74.29 E-value=1 Score=50.34 Aligned_cols=84 Identities=11% Similarity=-0.039 Sum_probs=51.4
Q ss_pred CcccccChHHHHHHHHHcCCCCCCCCCC-C-ceeEe--ecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcC
Q psy9414 71 TLEFQDHRPFYEWILNKIDKTNFIKRPF-P-KQYEF--SRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRG 146 (582)
Q Consensus 71 ~~e~~~~~~~~~~l~~~l~~~~~~~~~~-p-~~~~~--~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G 146 (582)
|.+|....++-....++||+ .. + ...|+ +.+++.+.|||||++.| ...|+..|...+
T Consensus 384 g~~q~~~~~~l~~~l~~lG~------~~~~~~~~h~~~g~V~~~~~KMSkr~G~~-------------n~v~l~dLl~e~ 444 (629)
T 2zue_A 384 GAEQKHPQLAIKYALQLLGF------EDAAANLYHLAYEHVERPEGKFSGRKGTW-------------VGFTVDEVIQEA 444 (629)
T ss_dssp EGGGHHHHHHHHHHHHHTTC------HHHHHTEEEEEECCEEBTTBCCCTTTTTT-------------TTCBHHHHHHHH
T ss_pred eCcHhhHHHHHHHHHHHcCC------CCCCCeEEEEEeeeEEcCCCcccCCCCCC-------------CeeeHHHHHHHH
Confidence 34444444555566678898 43 2 34465 67889999999999622 123555555542
Q ss_pred --------------------------CCHHHHHHHHHHhcccCCCCcccHHHHH
Q psy9414 147 --------------------------YTPESIKLFCKRIGVSKSDSWINIEILE 174 (582)
Q Consensus 147 --------------------------~~p~ai~~~~~~~G~s~~~~~~~~~~l~ 174 (582)
+-+.|++=|+.+.. ..++..|||+.+.
T Consensus 445 ~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~-~~~~~~Fd~d~~~ 497 (629)
T 2zue_A 445 VKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYS-PDKKIIFRWEDVL 497 (629)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSC-TTSCEECCHHHHS
T ss_pred HHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcC-CCCCCeecHHHHH
Confidence 45566665555543 3567788888765
No 122
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=74.16 E-value=5.2 Score=46.89 Aligned_cols=62 Identities=13% Similarity=-0.050 Sum_probs=48.5
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQAL 177 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~ 177 (582)
..+++|.+..+|.||||++.+. .+...+.++ |-++++|-|+...+-..++..|+.+.+....
T Consensus 637 ~v~~~G~v~~~G~KMSKS~GNv---------------v~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~ 698 (967)
T 1wz2_A 637 GIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKLR 698 (967)
T ss_dssp CEEEECCEEESSSCCCTTTCCC---------------CBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHHH
T ss_pred eEEEeeEEeeCCEEccccccCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHHH
Confidence 5778888878999999998532 355665554 8899999999888888888899988776653
No 123
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=73.54 E-value=0.93 Score=44.04 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.7
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
+...|+.||.|+.+||.+.
T Consensus 200 ~~~~C~~Cg~C~~vCP~gi 218 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKHV 218 (243)
T ss_dssp TGGGCCCCCHHHHHCTTCC
T ss_pred CcccCcccCCcchhCCCCC
Confidence 4578999999999999974
No 124
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=72.58 E-value=4.9 Score=46.07 Aligned_cols=61 Identities=13% Similarity=-0.039 Sum_probs=47.4
Q ss_pred ceeEeecccCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHH
Q psy9414 100 KQYEFSRLNLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 176 (582)
Q Consensus 100 ~~~~~~~l~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~ 176 (582)
..+++|.+..+|.|||||+.+. .++..+.+. |.++++|-|+...+--.++..|+.+.+...
T Consensus 637 ~v~~~G~v~~~G~KMSKS~GNv---------------v~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 637 GIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp EEEEECCEEETTBCCCTTTTCC---------------CBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred EEEEEeEEEeCCeehhhcCCCc---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 5678888888999999998532 355565543 779999999988887778888998877654
No 125
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=72.17 E-value=0.57 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=18.3
Q ss_pred cccCCccccchhhcCccCcee
Q psy9414 480 FSKLCTGCDLCIKKCPVNCIS 500 (582)
Q Consensus 480 ~~~~C~~Cg~Cv~~CP~~AI~ 500 (582)
+...|+.||.|+.+||+.++.
T Consensus 147 ~~~~Ci~Cg~C~~~CP~~~~~ 167 (241)
T 2bs2_B 147 ELDRCIECGCCIAACGTKIMR 167 (241)
T ss_dssp HHHTCCCCCHHHHTCHHHHHC
T ss_pred hhhhhhccCcCcccCCCCccC
Confidence 457899999999999999863
No 126
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=64.25 E-value=2 Score=41.97 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=16.5
Q ss_pred ccccccccchhhhcccccc
Q psy9414 450 KENKCIGCTLCIQSCPVDA 468 (582)
Q Consensus 450 d~~~Ci~Cg~Cv~~CP~~a 468 (582)
....|+.||.|+.+||.+.
T Consensus 211 ~~~~C~~Cg~C~~~CP~~i 229 (252)
T 2h88_B 211 SLYRCHTIMNCTRTCPKGL 229 (252)
T ss_dssp TTTTCCCCCHHHHHCTTCC
T ss_pred CCCcCccccchhhhcCCCC
Confidence 3468999999999999875
No 127
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=60.88 E-value=2.5 Score=43.83 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=44.7
Q ss_pred cCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCC-----------------Cccccccch
Q psy9414 62 IENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLT-----------------HTITSKRKL 119 (582)
Q Consensus 62 ~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~-----------------~~~lSKr~~ 119 (582)
+.+.+|++.|.|...+.....-+.+.|+. ..|...+.++| .++ |+||||++.
T Consensus 175 ~~~~~~v~~G~DQ~~~~~l~rdla~r~~~------~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 175 YMDLDIALGGMDQRKAHMLARDVAEKLGR------KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHHTTTTC------CCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred hcCCCEEeccchHHHHHHHHHHHHHHcCC------CCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 47899999999999999999999999998 88988888865 466 689999953
No 128
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=52.94 E-value=18 Score=42.00 Aligned_cols=60 Identities=15% Similarity=-0.057 Sum_probs=42.7
Q ss_pred ceeEeecccC-CCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHH
Q psy9414 100 KQYEFSRLNL-THTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQA 176 (582)
Q Consensus 100 ~~~~~~~l~~-~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~ 176 (582)
.++.+|.+.. +|.|||||+++. .+...+.+ .|-++++|-|+.. +-..++..|+++.|...
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGNv---------------V~P~dvi~-~yGaDalR~~lls-~~~~~D~~fs~~~l~~~ 641 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGNV---------------IVPDQVVK-QKGADIARLWVSS-TDYLADVRISDEILKQT 641 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSCC---------------CCHHHHHH-HTCHHHHHHHHHT-SCTTSCEECCHHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCCc---------------CChHHHHH-hCCHHHHHHHHhc-cCCCCCcccCHHHHHHH
Confidence 3556687764 799999998533 24555443 4779999999887 65567788988877653
No 129
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=50.68 E-value=3.8 Score=40.85 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.1
Q ss_pred ccCCccccchhhcCccCce
Q psy9414 481 SKLCTGCDLCIKKCPVNCI 499 (582)
Q Consensus 481 ~~~C~~Cg~Cv~~CP~~AI 499 (582)
...|+.||.|..+||+-..
T Consensus 179 ~~~CI~CG~C~~aCP~~~~ 197 (282)
T 3vr8_B 179 LYECILCACCSASCPSYWW 197 (282)
T ss_pred hhhCcccCcCcccCCceec
Confidence 4579999999999998653
No 130
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=48.57 E-value=8.2 Score=39.61 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=41.9
Q ss_pred ccCCCcEEecCcccccChHHHHHHHHHcC------CCCCCCCCCCceeEe---ecc-cCCC--ccccccchh
Q psy9414 61 AIENITHSICTLEFQDHRPFYEWILNKID------KTNFIKRPFPKQYEF---SRL-NLTH--TITSKRKLL 120 (582)
Q Consensus 61 ~~~githvir~~e~~~~~~~~~~l~~~l~------~~~~~~~~~p~~~~~---~~l-~~~~--~~lSKr~~~ 120 (582)
.+.+.+||+.|.|...+.....-+.+.|+ + ..|...+- ++| +++| +||||+...
T Consensus 144 l~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f------~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n 209 (348)
T 2yy5_A 144 LLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKL------RLPQFVQNKDTNRIMDLFDPTKKMSKSSKN 209 (348)
T ss_dssp HTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCC------CCCEEECCTTTTTCBCSSCTTSBCCSSCSC
T ss_pred HHhCccEEEecccHHHHHHHHHHHHHHhhhhccccc------CCCeeecccccccccCCCCcchhcCCCCCC
Confidence 34799999999999999998888888885 3 56766653 444 5667 899999765
No 131
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=42.39 E-value=16 Score=38.55 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=44.9
Q ss_pred cccccccccccc-----CCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccchh
Q psy9414 51 MYDYAHPISDAI-----ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRKLL 120 (582)
Q Consensus 51 ~Y~fa~~vdD~~-----~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~~~ 120 (582)
.||+-+.--|.. .+-++|..|.|-..|-..=.-+.+.+|. ..|...+.++| .++| +||||+...
T Consensus 231 AaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~------~~p~~l~~~ll~gLdG~~~KMSKS~~n 302 (432)
T 2ip1_A 231 IATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKY------SKPALLHSRFFPALQGSTTKMSASDDT 302 (432)
T ss_dssp HHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTS------CCCEEEEECCCCCTTC--------CGG
T ss_pred HHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCC------CCceeeccccccCCCCCccccCCCCCC
Confidence 567777655553 4689999999998888888888899998 88888887765 5778 899999754
No 132
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=42.26 E-value=13 Score=38.19 Aligned_cols=57 Identities=14% Similarity=-0.052 Sum_probs=40.4
Q ss_pred cCCCcEEecCcccccChHHHHHHHHHcCC--CCCCCCCCCcee--Eeecc-cCCCc-cccccchh
Q psy9414 62 IENITHSICTLEFQDHRPFYEWILNKIDK--TNFIKRPFPKQY--EFSRL-NLTHT-ITSKRKLL 120 (582)
Q Consensus 62 ~~githvir~~e~~~~~~~~~~l~~~l~~--~~~~~~~~p~~~--~~~~l-~~~~~-~lSKr~~~ 120 (582)
+.+.+||+.|.|...+.....-|.+.|+- +.. ...|... +.++| +++|+ ||||+...
T Consensus 160 ~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~--f~~P~~~~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 160 AFGATLVPVGDDQLPMLEQTREIVRRFNALYAPV--LAEPQAQLSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp HHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSC--SCCCEEEECSSCSCCCTTSSSCCCTTTTC
T ss_pred hcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccc--cCCCeeeeecCccccCCCCccccCCCCCC
Confidence 36899999999999999999888887641 000 1445433 35554 56787 99999754
No 133
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=39.03 E-value=32 Score=39.66 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=48.5
Q ss_pred ceeEeecc-cCCCccccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 100 KQYEFSRL-NLTHTITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 100 ~~~~~~~l-~~~~~~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
.++-+|.+ ..+|.||||++.+. .+...+.+ .|-++++|-|+...+...++..|+++.++.. +
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGNv---------------IdP~dli~-~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~-~ 576 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGNV---------------IDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMA-R 576 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTCC---------------CCHHHHHH-HHCHHHHHHHHHHHCCTTCCEECCHHHHHHH-H
T ss_pred EEEEeeeEEcCCCCCccccCCCC---------------CCHHHHHH-HcChHHHHHHHHhcCCCCCCCccCHHHHHHH-H
Confidence 35556654 46899999998533 23444443 3779999999999888888999999988774 3
Q ss_pred Hhhhcc
Q psy9414 179 DDLDIK 184 (582)
Q Consensus 179 ~~l~~~ 184 (582)
..++++
T Consensus 577 ~f~nkl 582 (862)
T 1gax_A 577 NFANKL 582 (862)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 355543
No 134
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=36.71 E-value=9.4 Score=39.04 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=40.5
Q ss_pred cCCCcEEecCcccccChHHHHHHHHHcCC--CCCCCCCCCc--eeEeecc-cCCCccccccch
Q psy9414 62 IENITHSICTLEFQDHRPFYEWILNKIDK--TNFIKRPFPK--QYEFSRL-NLTHTITSKRKL 119 (582)
Q Consensus 62 ~~githvir~~e~~~~~~~~~~l~~~l~~--~~~~~~~~p~--~~~~~~l-~~~~~~lSKr~~ 119 (582)
+.+.++|+.|.|...+.....-|.+.|+. +..+ ..|. ..+.++| .++|+||||+..
T Consensus 151 ~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f--~~P~~~~~~~~~l~gldG~KMSKS~~ 211 (340)
T 2g36_A 151 IYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVF--PEPEAILSRVPKLPGTDGRKMSKSYG 211 (340)
T ss_dssp TTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCC--CCCEEEECCSCCCCCTTSSCCCGGGT
T ss_pred HhCCCEEEcccchHHHHHHHHHHHHHhhhhccccc--CCchhhhccccccCCCCccccCCCCC
Confidence 47999999999999999988888887752 0111 3454 3345654 567999999975
No 135
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=31.93 E-value=16 Score=37.30 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=40.5
Q ss_pred cCCCcEEecCcccccChHHHHHHHHHc----C--CCCCCCCCCCceeEe---ecc-cCCC-ccccccchh
Q psy9414 62 IENITHSICTLEFQDHRPFYEWILNKI----D--KTNFIKRPFPKQYEF---SRL-NLTH-TITSKRKLL 120 (582)
Q Consensus 62 ~~githvir~~e~~~~~~~~~~l~~~l----~--~~~~~~~~~p~~~~~---~~l-~~~~-~~lSKr~~~ 120 (582)
+.+.++++.|.|...+.....-|.+.| | + ..|...+- ++| +++| +||||+...
T Consensus 139 ~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f------~~P~~~~~~~~p~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 139 IYKADTVPVGEDQVQHIELTREIARRFNHLFGETF------PEPQALLNPEAPRVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp HTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCC------CCCEEECCTTSCCCBCTTSSSBCCTTTTC
T ss_pred hhCCcEEEcccchHHHHHHHHHHHHHHHhhcCccc------CCCeeecccccccccCCCCccccCCCCCC
Confidence 368999999999999988888888776 4 3 55655554 444 5678 899999754
No 136
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=29.23 E-value=17 Score=36.98 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=41.3
Q ss_pred ccCCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeE---eecc-cCCC--ccccccchh
Q psy9414 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYE---FSRL-NLTH--TITSKRKLL 120 (582)
Q Consensus 61 ~~~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~---~~~l-~~~~--~~lSKr~~~ 120 (582)
.+.+.++|+.|.|...+.....-|.+.|+...-.....|.... .++| +++| +||||+...
T Consensus 134 l~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n 199 (328)
T 1i6k_A 134 LLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199 (328)
T ss_dssp HTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSC
T ss_pred HHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCC
Confidence 3479999999999999999888888887720000004555443 2443 5677 899999865
No 137
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=28.78 E-value=18 Score=38.16 Aligned_cols=51 Identities=8% Similarity=-0.134 Sum_probs=43.3
Q ss_pred CCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCc-cccccch
Q psy9414 63 ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHT-ITSKRKL 119 (582)
Q Consensus 63 ~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~-~lSKr~~ 119 (582)
.+.++++-|.|...|-..-.-|.+.+|. .+|...+.+.| .++|+ ||||+..
T Consensus 186 l~~~l~~gG~DQ~~ni~l~rdlarr~~~------~~~~~lt~pll~gldG~~KMSKS~~ 238 (432)
T 1h3f_A 186 IRADVEMGGTDQRFNLLVGREVQRAYGQ------SPQVCFLMPLLVGLDGREKMSKSLD 238 (432)
T ss_dssp HTCSEEEEEGGGHHHHHHHHHHHHHTTC------CCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred cCccEEEechHHHHHHHHHHHHHHHhCC------CCceEeecccccCCCCccccCcCCC
Confidence 4689999999999999988999999998 77877777765 56787 9999974
No 138
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=27.66 E-value=11 Score=43.55 Aligned_cols=19 Identities=32% Similarity=0.987 Sum_probs=14.5
Q ss_pred cccccc------chhhhccccccee
Q psy9414 452 NKCIGC------TLCIQSCPVDAII 470 (582)
Q Consensus 452 ~~Ci~C------g~Cv~~CP~~ai~ 470 (582)
+.|..| |.|+..||.+-..
T Consensus 223 ~~C~~C~~~~~~~~Cv~~Cp~~~y~ 247 (897)
T 2dtg_E 223 TKCVACRNFYLDGRCVETCPPPYYH 247 (897)
T ss_dssp GGEECCSSCBBTTBCCSSCCSSCCC
T ss_pred CceeECccCccCCcchhhcCCceeE
Confidence 348888 7999999986543
No 139
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=27.29 E-value=31 Score=34.66 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=33.8
Q ss_pred CCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC-ccccccc
Q psy9414 63 ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH-TITSKRK 118 (582)
Q Consensus 63 ~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~-~~lSKr~ 118 (582)
.+.+|++.|.|...+. -+.+.+.- .+|...+.++| .++| +||||+.
T Consensus 162 ~~~~~v~~G~DQ~~~~----~l~R~i~~------~~~~~~~~~~l~~l~G~~KMSKS~ 209 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH----MLARELLP------KKVVCIHNPVLTGLDGEGKMSSSK 209 (314)
T ss_dssp HTCSEEEEEGGGHHHH----HHHHHHSS------SCCEEEEECCCBCTTSSSBCCTTT
T ss_pred hCCCEEEcChhHHHHH----HHHHHhcC------CCcEEeeccccccCCcccccCCCC
Confidence 4899999999987644 34444544 57888887765 5678 7999994
No 140
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=26.69 E-value=15 Score=39.46 Aligned_cols=18 Identities=28% Similarity=1.099 Sum_probs=13.0
Q ss_pred ccccc------chhhhccccccee
Q psy9414 453 KCIGC------TLCIQSCPVDAII 470 (582)
Q Consensus 453 ~Ci~C------g~Cv~~CP~~ai~ 470 (582)
.|..| |.|+..||.+...
T Consensus 217 ~C~aC~~~~~~g~Cv~~CP~~~y~ 240 (478)
T 1igr_A 217 ACVACRHYYYAGVCVPACPPNTYR 240 (478)
T ss_dssp SEEEESSEECSSSEESSCCTTCEE
T ss_pred ceeeeeeeccCCcCcccCCCceeE
Confidence 47777 6888888876543
No 141
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=25.19 E-value=26 Score=36.45 Aligned_cols=50 Identities=12% Similarity=-0.022 Sum_probs=31.9
Q ss_pred CC-cEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccch
Q psy9414 64 NI-THSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRKL 119 (582)
Q Consensus 64 gi-thvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~~ 119 (582)
+| ++|..|.|-..+-..-.-+.+.++. .+|...+.++| .++| +||||+..
T Consensus 219 di~~lvp~G~DQ~~~i~l~Rdla~r~~~------~~p~~l~~~~l~gLdG~~~KMSKS~~ 272 (393)
T 3hv0_A 219 DIHCLVPHAIDQDPYFRMVRDVAPRLGY------LKPSSIHSIFLPSLQGSQTKMSASVQ 272 (393)
T ss_dssp CCCEEEEEEGGGHHHHHHHHHHTGGGTC------CCCEEEEECCCCC-------------
T ss_pred CCceecccccchHHHHHHHHHHHHHcCC------CCceeeccCcccCCCCCCcCCCCCCC
Confidence 45 6889999988888777888888998 88988887765 4678 79999974
No 142
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=23.66 E-value=44 Score=34.71 Aligned_cols=50 Identities=8% Similarity=-0.131 Sum_probs=40.6
Q ss_pred CcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccchh
Q psy9414 65 ITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRKLL 120 (582)
Q Consensus 65 ithvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~~~ 120 (582)
-++|..|.|-..+-..-.-+.+.+|. ..|...+.++| .++| +||||+...
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~r~n~------~~p~~l~~~~l~gLdG~~~KMSKS~~n 260 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAESLGY------YKTAALHSKFVPSLTSLSGKMSASKPE 260 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTGGGTS------CCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred CceeecccchHHHHHHHHHHHHHcCC------CCCeeeecccccCCCCCccccccCCCC
Confidence 57899999988877777888888998 88888887765 4677 599999854
No 143
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=23.23 E-value=24 Score=37.72 Aligned_cols=64 Identities=13% Similarity=-0.013 Sum_probs=49.3
Q ss_pred cccccccccccc-----CCCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccchh
Q psy9414 51 MYDYAHPISDAI-----ENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRKLL 120 (582)
Q Consensus 51 ~Y~fa~~vdD~~-----~githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~~~ 120 (582)
.||+-..--|.. .+-++|..|.|-..+-..-.-|.+.+|. ..|...+.++| .++| +||||+...
T Consensus 285 AaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~------~~p~~l~~pll~gLdG~~~KMSKS~~n 356 (477)
T 1r6t_A 285 AAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY------PKPALLHSTFFPALQGAQTKMSASDPN 356 (477)
T ss_dssp HGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTC------CCCEEEEECCCEETTEEEEECCTTSTT
T ss_pred HHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCC------CCceeeecccccCCCCCccccCCCCCC
Confidence 567666544443 3558899999999888888888899998 88888887765 5778 799999754
No 144
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=22.09 E-value=43 Score=34.27 Aligned_cols=50 Identities=8% Similarity=-0.168 Sum_probs=32.9
Q ss_pred CCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccch
Q psy9414 64 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKL 119 (582)
Q Consensus 64 githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~ 119 (582)
+.++++-|.|-..+-..=.-|.+.++. .+|.....+.| .++|+||||+..
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla~r~n~------~~~~~l~~pll~~ldG~KMSKS~~ 260 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFINKLTG------EDVFGITVPLITSTTGAKLGKSAG 260 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHHHHHSS------CCCEEEEECCCC------------
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------CCccccccccccCCCcccccCCCC
Confidence 899999999999888888888999998 77877777765 567999999963
No 145
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=21.71 E-value=48 Score=34.62 Aligned_cols=49 Identities=10% Similarity=0.004 Sum_probs=41.0
Q ss_pred CCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccc
Q psy9414 64 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRK 118 (582)
Q Consensus 64 githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~ 118 (582)
+.+++..|.|-..+-..=.-+.+.++. .+|...+.++| .++| +||||+.
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r~~~------~~p~~l~~~~l~gLdG~~~KMSKS~ 294 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKALGE------KKPSSIYVSLLPDLKGVNRKMSASD 294 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTC------CCCEEEEECCCCCTTSCCCCSSCSC
T ss_pred CCeEEeeccchHHHHHHHHHHHHHcCC------CCceeeccCcccCCCCCCcCCCCCC
Confidence 578899999988888888888889998 88988877765 5678 6999997
No 146
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=21.64 E-value=1.3e+02 Score=31.59 Aligned_cols=51 Identities=8% Similarity=-0.195 Sum_probs=43.1
Q ss_pred CCcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCCccccccchh
Q psy9414 64 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTHTITSKRKLL 120 (582)
Q Consensus 64 githvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~~~lSKr~~~ 120 (582)
+.++++-|.|-..|-..=.-|.+.++. .+|.....+.| .++|+||||+...
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------~~~~~l~~plL~~ldG~KMSKS~~n 238 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------ATVHALTVPLVTAADGTKFGKSTGG 238 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------CCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------CCccccccccccCCCcCcCCCCCCC
Confidence 899999999999888888888899987 67777777765 5779999999754
No 147
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=21.55 E-value=1.6e+02 Score=33.93 Aligned_cols=50 Identities=22% Similarity=0.072 Sum_probs=37.7
Q ss_pred cccccchhhhccccccCCCCCCCcccHHHHHHcCCCHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Q psy9414 113 ITSKRKLLKLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178 (582)
Q Consensus 113 ~lSKr~~~~~v~~~~v~gwdDpr~~tl~~lr~~G~~p~ai~~~~~~~G~s~~~~~~~~~~l~~~~~ 178 (582)
||||++.+. .+...+.++ |-+.++|-|+...+--.++..++.+.++...|
T Consensus 639 KMSKSkGNv---------------VdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~a~r 688 (880)
T 4arc_A 639 KMSKSKNNG---------------IDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEGANR 688 (880)
T ss_dssp ECCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH
T ss_pred cccCcCCCC---------------CCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHHHHH
Confidence 999998543 255565544 88999999999998777888888887765543
No 148
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=21.47 E-value=23 Score=32.23 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=14.2
Q ss_pred eccccccccchhhhcccc
Q psy9414 449 IKENKCIGCTLCIQSCPV 466 (582)
Q Consensus 449 id~~~Ci~Cg~Cv~~CP~ 466 (582)
.+-.+|++|+.|+++|-.
T Consensus 139 gnlcRCt~y~~~v~A~~~ 156 (168)
T 1t3q_A 139 GNLCRCTGYETIIDAITD 156 (168)
T ss_dssp GSCCSSSCSHHHHHHHTC
T ss_pred CCcccCCCchHHHHHHHH
Confidence 356689999999998864
No 149
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=20.58 E-value=29 Score=36.18 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=32.0
Q ss_pred CcEEecCcccccChHHHHHHHHHcCCCCCCCCCCCceeEeecc-cCCC--ccccccc
Q psy9414 65 ITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRL-NLTH--TITSKRK 118 (582)
Q Consensus 65 ithvir~~e~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~~~~l-~~~~--~~lSKr~ 118 (582)
-+++..|.|-..+-..=.-+.+.+|. .+|...+.++| .++| +||||+.
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~r~~~------~~p~~l~~~~l~gLdG~~~KMSKS~ 275 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGY------LKPAVIHSKFFPGLSGPKGKMSSSS 275 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTC------CCCEEEEECCCCCC-----------
T ss_pred ceEEEeccchHHHHHHHHHHHHHcCC------CCceeeccccccCCCCCcccCCCCC
Confidence 57899999988877777788888998 88988887765 4677 7999994
Done!