RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9414
(582 letters)
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 567 bits (1463), Expect = 0.0
Identities = 177/378 (46%), Positives = 234/378 (61%), Gaps = 18/378 (4%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 219
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLL 120
A+E ITHS+CTLEFQD+R Y+W+L+ I P+QYEFSRLNL +T+ SKRKL
Sbjct: 220 ALEGITHSLCTLEFQDNRRLYDWVLDNITIP-----VHPRQYEFSRLNLEYTVMSKRKLN 274
Query: 121 KLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
L+ K V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 275 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 334
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKEKLRYFPISKILWIERD 240
L+ APR MAV++P+KL+I N+ + T P + + R P S +WI+R
Sbjct: 335 LNENAPRAMAVIDPVKLVIENY-QGEGEMVTMPNHPNKP---EMGSRQVPFSGEIWIDRA 390
Query: 241 DFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSG 300
DF E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 391 DFREEANKQYKRLVL------GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSK 444
Query: 301 TKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISA 360
+ KVKG IHW+S +HAL +E RLYDRLF P P DF +INP S +
Sbjct: 445 -DPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPG--AADDFLSVINPESLVIKQG 501
Query: 361 YLEPNLKLIFPKKHAQFE 378
+ EP+LK K QFE
Sbjct: 502 FAEPSLKDAVAGKAFQFE 519
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 550 bits (1419), Expect = 0.0
Identities = 151/418 (36%), Positives = 226/418 (54%), Gaps = 60/418 (14%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
M++GEF DG HVLR KI++ + N+ +RDP++YRI + H+RT++ W IYP YD+ HP+ D
Sbjct: 200 MKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQD 259
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLL 120
AIE +THS+C+LEF D+R Y+W++ K++ P P QYEF R L +TITSKRKL
Sbjct: 260 AIEGVTHSMCSLEFVDNRAIYDWLMEKLNFD-----PRPHQYEFGRRGLEYTITSKRKLR 314
Query: 121 KLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
+L++ V GWDDPRMPTL RR G TPE+++ F +IGVS+++ ++I + E A+RDD
Sbjct: 315 ELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRDD 374
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIEC------------TAPLFSRQHTQYKEKL-- 226
L+ +APR+MAVL+P+K+ ++N + + + + +
Sbjct: 375 LNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAV 434
Query: 227 RYFPISKILWIERDDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEV 286
R P+++ L+IERDDF P K + RL P G VRLR ++ F ++ +V
Sbjct: 435 RDVPLTRELYIERDDFSPAPPKGFKRLTP------GGTVRLRGAGIIRADDFGTDEAGQV 488
Query: 287 VEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPN------- 339
+ + K G IHW+S AL E RLYDRLF P+P
Sbjct: 489 THIRATLLGEDA---------KAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVE 539
Query: 340 -------------------IVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFE 378
++ F + P+S +V+ Y+EP++ QFE
Sbjct: 540 DDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFE 597
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 445 bits (1147), Expect = e-151
Identities = 78/379 (20%), Positives = 139/379 (36%), Gaps = 72/379 (18%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
M E K+G+ V+RVK ++ N +RD + RI H RT + +YPM +++ + D
Sbjct: 225 MF--EMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDD 282
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLL 120
+ +TH + + +R E++ + P+ + RL + S
Sbjct: 283 HLLGVTHVLRGKDHLANREKQEYLYRHLGW------EPPEFIHYGRLKMDDVALSTSGAR 336
Query: 121 KLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
+ + + GWDDPR+ TL + RRG PE+I+ IGV +DS ++ + + R
Sbjct: 337 EGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSI 396
Query: 181 LDIKAPRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKEK-LRYFPISKILWIER 239
L+ +A R +P+KL + +E PL H + E R + +++
Sbjct: 397 LEEEARRYFFAADPVKLEVVGLPGPVRVE--RPL----HPDHPEIGNRVLELRGEVYLPG 450
Query: 240 DDFMEIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKS 299
DD E P +RL V +G + + + +++
Sbjct: 451 DDLGEGP------------------LRLIDAVNVIYSG-------GELRYHSEGIEEARE 485
Query: 300 GTKLSSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVIS 359
IHW+ AL E + D +
Sbjct: 486 --------LGASMIHWVPAESALEAEVIMPDASRVR------------------------ 513
Query: 360 AYLEPNLKLIFPKKHAQFE 378
+E + + Q E
Sbjct: 514 GVIEADASELEVDDVVQLE 532
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Length = 446
Score = 95.4 bits (237), Expect = 3e-21
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 9/129 (6%)
Query: 380 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG 439
LP+ C +CG P C +A +A+ KA+ + CP L PI + G
Sbjct: 10 KQLPKKNCGECGTPTCLAFAMNLASGKASLDSCPYVSDAAREALDAAAAPPIAKVVLGAG 69
Query: 440 NEK----SRCCAIIKENKCIGCTLCIQSCPVD----AIIGAAKHMHTIFSKLCTGCDLCI 491
+ + T + + + ++ + G I
Sbjct: 70 PTAVEMGDETELFRHDKRFYHETAIAIQVSDNLSSEELKAKVEAING-LNFDRVGQHYTI 128
Query: 492 KKCPVNCIS 500
+ + +
Sbjct: 129 QAIAIRHDA 137
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 76.0 bits (187), Expect = 2e-17
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAII-------GAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
+ + CIGCT C+++CP D + A + + ++ C GC C CP + +
Sbjct: 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Query: 500 SMIEVTPCRT 509
S+ T
Sbjct: 63 SIRVYLGAET 72
Score = 41.8 bits (98), Expect = 2e-05
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 431 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
++ + G + + + + C+GC C +CP D +
Sbjct: 24 VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Score = 38.3 bits (89), Expect = 4e-04
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 483 LCTGCDLCIKKCPVNCISMIEVTPCRTG 510
C GC C++ CP + + M+ C+ G
Sbjct: 9 TCIGCTQCVRACPTDVLEMVPWDGCKAG 36
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 73.4 bits (180), Expect = 5e-14
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 380 NLLPQTQCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG 439
LP+ C +CG P C +A IA KA + CP + L P+ I
Sbjct: 10 KHLPKKNCKECGQPTCLAFAMQIAAGKAGLDACPYVSDEAKELLESASAPPV---ALIKV 66
Query: 440 NEKSRCCAIIKEN 452
+ + I E
Sbjct: 67 GKGEKVLEIGHET 79
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 63.6 bits (155), Expect = 5e-11
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 417 RKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHM 476
R + ++ ++ P + I E KCIGC C Q CP AI G
Sbjct: 3 RTVMERIEYEMHTPDPKAD-----PDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEP 57
Query: 477 H-TIFSKLCTGCDLCIKKCPVNCIS 500
H + C C C+ CP N I
Sbjct: 58 HSIPHIEACINCGQCLTHCPENAIY 82
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 440 NEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTG 486
E +I CI C C+ CP +AI A + + KL G
Sbjct: 52 GEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDG 98
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 56.5 bits (137), Expect = 9e-11
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500
A + CI C C CPV+AI + + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNAIS-SGDDRYVIDADTCIDCGACAGVCPVDAPV 53
Score = 38.0 bits (89), Expect = 3e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAIIGA 472
P+N I + +I + CI C C CPVDA + A
Sbjct: 19 PVNAISSGDDR---YVIDADTCIDCGACAGVCPVDAPVQA 55
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 484 CTGCDLCIKKCPVNCISM 501
C C C +CPVN IS
Sbjct: 8 CISCGACEPECPVNAISS 25
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 57.2 bits (138), Expect = 2e-10
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII--------GAAKHMHTIFSKLC 484
P+ + + CI CI +CPV+ + K + + C
Sbjct: 24 PVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQAC 83
Query: 485 TGCDLCIKKCPVNCISM 501
C C+ CPV I +
Sbjct: 84 IFCMACVNVCPVAAIDV 100
Score = 35.3 bits (81), Expect = 0.008
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 465 PVDAIIGAAKH--MHTIFSKLCTGCDLCIKKCPVNCISMIEV 504
PV+ H + + LC CI CPVN +
Sbjct: 24 PVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDT 65
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 55.5 bits (134), Expect = 4e-10
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 499
A++ ++CI C +C CP A I + I LCT C C++ CPV+ I
Sbjct: 1 ALMITDECINCDVCEPECPNGA-ISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAI 58
Score = 36.6 bits (85), Expect = 0.002
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 484 CTGCDLCIKKCPVNCISM 501
C CD+C +CP IS
Sbjct: 8 CINCDVCEPECPNGAISQ 25
Score = 30.4 bits (69), Expect = 0.25
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCT------LCIQSCPVDAII 470
P I +++ +I+ + C C C++ CPVDAII
Sbjct: 19 PNGAISQGDETY---VIEPSLCTECVGHYETSQCVEVCPVDAII 59
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 61.8 bits (150), Expect = 5e-10
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 396 RQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYG--NEKSRCCAIIKENK 453
+ + + P +K I + + K + +G + + A+I E
Sbjct: 894 KMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGK-ALQYLGTFGELSNIEQVVAVIDEEM 952
Query: 454 CIGCTLCIQSCP---VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV-NCISMIEVT---P 506
CI C C +C AI + + CTGC LC+ CP+ +CI M+ T
Sbjct: 953 CINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYE 1012
Query: 507 CRTG 510
+ G
Sbjct: 1013 PKRG 1016
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 55.9 bits (134), Expect = 1e-09
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 447 AIIKENKCIGC-----TLCIQSCPVDAII--GAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
+ + KC GC T C CP D + + +C C C+K CP I
Sbjct: 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAI 62
Query: 500 SM 501
+
Sbjct: 63 DV 64
Score = 40.5 bits (94), Expect = 3e-04
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
P + + +++ + + C C C++ CP AI
Sbjct: 26 PNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAI 62
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 55.6 bits (133), Expect = 3e-09
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 447 AIIKENKCIGC-----TLCIQSCPVDAIIGAAKHM--HTIFSKLCTGCDLCIKKCPVNCI 499
+ +KC GC T C+ CP D +I + M + C C CIK CP I
Sbjct: 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61
Query: 500 SM 501
+
Sbjct: 62 TA 63
Score = 40.6 bits (94), Expect = 3e-04
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
P + + + + + C C CI+ CP AI
Sbjct: 25 PNDLMILDPEEMKAFNQEPEACWECYSCIKICPQGAI 61
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 57.4 bits (139), Expect = 8e-09
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 20/110 (18%)
Query: 412 CPTGGRKG---IIKLAKYLN----KPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSC 464
C R+ +KL KP +P + ++ + KC+ C C+ +C
Sbjct: 98 CGPCNRRENCEFLKLVIKYKARASKPFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNAC 157
Query: 465 PVDAIIGA-------------AKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ A A+ C C CI CPV +S
Sbjct: 158 GKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSE 207
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 50.4 bits (121), Expect = 2e-08
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 499
++ + CI C +C CP AI + + I LCT C C + CPV+CI
Sbjct: 1 SLKITDDCINCDVCEPECPNGAISQGEEI-YVIDPNLCTECVGHYDEPQCQQVCPVDCI 58
Score = 34.6 bits (80), Expect = 0.010
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 484 CTGCDLCIKKCPVNCISM 501
C CD+C +CP IS
Sbjct: 8 CINCDVCEPECPNGAISQ 25
Score = 30.0 bits (68), Expect = 0.40
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 448 IIKENKCIGCT------LCIQSCPVDAIIGAAKHMHT 478
+I N C C C Q CPVD I ++ +
Sbjct: 31 VIDPNLCTECVGHYDEPQCQQVCPVDCIPLDDANVES 67
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP:
d.58.1.1
Length = 80
Score = 50.1 bits (120), Expect = 3e-08
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCI 499
A+ + C C C++ CP +AI ++ I C+ C C CP +CI
Sbjct: 1 ALYINDDCTACDACVEECPNEAIT-PGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCI 58
Score = 32.0 bits (73), Expect = 0.070
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 484 CTGCDLCIKKCPVNCISMIE 503
CT CD C+++CP I+ +
Sbjct: 8 CTACDACVEECPNEAITPGD 27
Score = 29.7 bits (67), Expect = 0.44
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 448 IIKENKCIGCT------LCIQSCPVDAIIGAAKHMHT 478
+I KC C C CP D I + T
Sbjct: 31 VIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRET 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 9e-08
Identities = 62/351 (17%), Positives = 107/351 (30%), Gaps = 109/351 (31%)
Query: 77 HRPFYEWILNKI---------DKTNFIK---------RPFPKQYEFSRLNLTHTITSKRK 118
R Y+++++ I +I+ + F K Y SRL + ++
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKL--RQA 143
Query: 119 LLKLLEKK--IVDGWDDPRMP-----TLIGMRRRGYTPESIKLFCKRIGVSKSDSWINI- 170
LL+L K ++DG + + Y + F + W+N+
Sbjct: 144 LLELRPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDF----KI----FWLNLK 190
Query: 171 ------EILE--QALRDDLDIK-------APRIMAVLNPIKLIISNFLDNQEIE-CTAPL 214
+LE Q L +D + I ++ I+ + L ++ E C L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---L 247
Query: 215 FSRQHTQYKEKLRYFPIS-KILWIERD----DFMEIPTKKYFRLYPPIGKNSGNRVRLRY 269
+ Q + F +S KIL R DF+ T + L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL---------------- 291
Query: 270 GYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHALSIEARLY 329
+EV + KY L + N +S I +
Sbjct: 292 --DHHSMTLTP---DEVKSLLLKYL--DCRPQDLPRE-VLTTNPRRLS-----IIAESIR 338
Query: 330 DRLF-IDPYPNIVNNKDFKLLINPNSKKVISAYLEPNL------KL-IFPK 372
D L D + + VN +I + LEP +L +FP
Sbjct: 339 DGLATWDNWKH-VNCDKLTTII-----ESSLNVLEPAEYRKMFDRLSVFPP 383
Score = 48.7 bits (115), Expect = 4e-06
Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 74/257 (28%)
Query: 170 IEILEQALRDDLDIKAPRIMAVLNPIKLIISN------FLDNQEIECTAPLF----SRQH 219
+ + E A D+ D K V + K I+S + + T LF S+Q
Sbjct: 22 LSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 220 TQYKE------KLRY-FPISKILWIERDDFMEIPTKKYF----RLY---PPIGKNSGNRV 265
++ ++ Y F +S I +R + T+ Y RLY K + +R+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 266 R----LRYGYVVECTGFKKNKNNEVVEVY----CKYFPDSKS--GTKLSSNYKVK----G 311
+ LR + + + V + K+ + +YKV+
Sbjct: 135 QPYLKLR-------QALLELRPAKNVLIDGVLGS-----GKTWVALDVCLSYKVQCKMDF 182
Query: 312 NIHWISKSHALSIEA------RLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPN 365
I W++ + S E +L + IDP ++ + + +S ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHS-------IQAE 233
Query: 366 LKLIFPKKHAQFEQNLL 382
L+ + K +E LL
Sbjct: 234 LRRLL--KSKPYENCLL 248
Score = 43.3 bits (101), Expect = 2e-04
Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 68/250 (27%)
Query: 38 NHYRTNNNWCIYPMYDYAHPISDAIENITHSICTLEFQDHRPFYE--------------- 82
+ T +NW + D ++ IE+ S+ LE ++R ++
Sbjct: 339 DGLATWDNW-KHVNCD---KLTTIIES---SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 83 ----W----------ILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLLEKKIV 128
W ++NK+ K + +++ PK+ S ++ + K + L + IV
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 129 DGWDDPR---MPTLIGMRRRGYTPESIKLFCKRIG-----VSKSDSW-------INIEIL 173
D ++ P+ LI Y F IG + + ++ L
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQY-------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 174 EQALR-DDLDIKAP-RIMAVLNPIKL----IISNFLDNQEIECTAPLFSRQHTQYKEKLR 227
EQ +R D A I+ L +K I N + + F + +E L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLI 560
Query: 228 YFPISKILWI 237
+ +L I
Sbjct: 561 CSKYTDLLRI 570
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 3e-07
Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 122/309 (39%)
Query: 218 QHTQYK----EKLRYFPISKILWIERDDFM---------EI----PTKK--YFRLYPPIG 258
Q +Q + + + ++ +W D+ +I P +F G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF------G 1677
Query: 259 KNSGNRVRLRYG---YVVECTGFKKNKN--NEVVEVYCKY-FPDSKSGTKLSSN------ 306
G R+R Y + G K + E+ E Y F K +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 307 ------YKV---KGNIHWISKS--H------ALSIEARLYDRLFIDPYPNIVNNKDFKLL 349
++ KG I + H AL+ A
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD---------------------- 1775
Query: 350 INPNSKKVISAYLEPNLKLIFPKKHAQFEQNLLPQTQCTKCGY------PG--------- 394
V+S +E ++++F Q +P+ + + Y PG
Sbjct: 1776 -------VMS--IESLVEVVF--YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 395 -CRQYAEAIANKK------ANYNQCPT------GGRKGIIKLAKYLNK------PIIPLN 435
+ E + + NYN G + + + LN II L
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYN-VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 436 TIYGNEKSR 444
E+
Sbjct: 1884 KSLSLEEVE 1892
Score = 39.6 bits (92), Expect = 0.003
Identities = 33/205 (16%), Positives = 56/205 (27%), Gaps = 91/205 (44%)
Query: 63 ENITHSI-CTLEFQDHRPF---YEWILNKIDKTNFIKRPFPK------------------ 100
+I H++ L ++ E I N I KRPF K
Sbjct: 99 NDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 101 -----Q-------------YEFSRLNLTHTITSKRKLLKLLEKKIVD------------G 130
Q Y+ + + I + L L + +D
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 131 W-DDPR--------------MPTLIGM----------RRRGYTPESI-KLFCKRIGVSK- 163
W ++P P LIG+ + G+TP + G S+
Sbjct: 218 WLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 164 ---------SDSWIN-IEILEQALR 178
+DSW + + +A+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAIT 301
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9*
3m9s_9*
Length = 182
Score = 49.4 bits (118), Expect = 4e-07
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 15/66 (22%)
Query: 451 ENKCIGCTLCIQSCPVDAI-IGAAKHMHTIFSK--------------LCTGCDLCIKKCP 495
KCIGC+LC +CP AI + A++ C C LC + CP
Sbjct: 50 LEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACP 109
Query: 496 VNCISM 501
I +
Sbjct: 110 TGAIVL 115
Score = 34.4 bits (79), Expect = 0.058
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 484 CTGCDLCIKKCPVNCISMI 502
C GC LC CP I +
Sbjct: 53 CIGCSLCAAACPAYAIYVE 71
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 451 ENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503
+++CI C C++ P +D I A + + + CPV CI +
Sbjct: 8 QDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEE-VEEAMDTCPVQCIHWED 63
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 45.1 bits (107), Expect = 2e-06
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPV-NCI 499
A++ KCI C +C CP +AI I S CT C C K CP+ N I
Sbjct: 1 ALLITKKCINCDMCEPECPNEAISMGDHIYE-INSDKCTECVGHYETPTCQKVCPIPNTI 59
Score = 30.9 bits (70), Expect = 0.18
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 484 CTGCDLCIKKCPVNCISMIE 503
C CD+C +CP ISM +
Sbjct: 8 CINCDMCEPECPNEAISMGD 27
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 48.8 bits (117), Expect = 4e-06
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 447 AIIKENKCI----GCTLCIQSCPV-----DAI-IGAAKHMHTIFSKLCTGCDLCIKKCPV 496
A+I +KC G LC + CPV +AI I + I CTGC +C+ KCP
Sbjct: 22 AVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81
Query: 497 NCISMI 502
N IS++
Sbjct: 82 NAISIV 87
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 47.7 bits (114), Expect = 8e-06
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 447 AIIKENKCIG--CTL-CIQSCPV-----DAI-IGAAKHMHTIFSKLCTGCDLCIKKCPVN 497
AI+ +KC C C +SCPV I + + I LC GC +C+KKCP +
Sbjct: 9 AIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFD 68
Query: 498 CISMI 502
I +I
Sbjct: 69 AIQII 73
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Length = 59
Score = 42.0 bits (99), Expect = 1e-05
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 449 IKENKCIGCTLCIQSCP-VDAIIGAAKHMHTIFSKLCTGC-DLCIKKCPVNCIS 500
I +CIGC C++ CP V A+I + C I CPV IS
Sbjct: 4 IDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDACPVEAIS 57
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium
tuberculosis, Fe cluster, metal-binding, electron
transfer, transport; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 41.2 bits (97), Expect = 7e-05
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 448 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
+I E C+ CI+ CPVD I M I C C C CPV I +
Sbjct: 3 VIAEP-CVDVKDKACIEECPVDCIY-EGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60
Query: 506 PCRTGWDAWSQKKAD 520
P W +++Q AD
Sbjct: 61 P--DQWSSYAQANAD 73
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Length = 77
Score = 40.3 bits (95), Expect = 7e-05
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 448 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
+I E CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 3 VITEP-CIGTKDASCVEVCPVDCIH-EGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60
Query: 506 PCRTGWDAWSQKKADDARK 524
P W ++ QK D +K
Sbjct: 61 P--EEWKSYIQKNRDFFKK 77
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
{Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Length = 58
Score = 39.8 bits (93), Expect = 8e-05
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 448 IIKENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500
I + C+ C C++ CP ++ A ++ C + I CP I
Sbjct: 2 IEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCV--EEAIDSCPAEAIV 56
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
azotobacter, hydrogen bonds, stability, high resolution;
1.64A {Thermus aquaticus} SCOP: d.58.1.2
Length = 78
Score = 40.3 bits (95), Expect = 8e-05
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 448 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
+I E CIG C++ CPV+ I I + C C C+ CPVN I E
Sbjct: 3 VICEP-CIGVKDQSCVEVCPVECIY-DGGDQFYIHPEECIDCGACVPACPVNAIYPEEDV 60
Query: 506 PCRTGWDAWSQKKAD 520
P W ++ +K
Sbjct: 61 P--EQWKSYIEKNRK 73
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 41.1 bits (97), Expect = 9e-05
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 448 IIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVT 505
++ +N CI C T C++ CPVD + I C C LC +CP I +
Sbjct: 3 VVTDN-CIKCKYTDCVEVCPVDCFY-EGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60
Query: 506 PCRTGWDAWSQKKADDARK 524
P + Q A+ A
Sbjct: 61 P--EDMQEFIQLNAELAEV 77
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 41.4 bits (97), Expect = 5e-04
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 448 IIKENKCIGCTLCIQSCPVDA--IIGAAKHMHTIFSKLCTGC-DL--------CIKKCPV 496
+ CIGC CI CP + + ++ K CT C D C+K CP
Sbjct: 127 DFQSENCIGCGYCIAGCPFNIPRLNKEDNRVY----K-CTLCVDRVSVGQEPACVKTCPT 181
Query: 497 NCI 499
I
Sbjct: 182 GAI 184
Score = 31.4 bits (71), Expect = 0.71
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 460 CIQSCPVDAII-----GAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506
C+++CP I G + C GC CI CP N + +
Sbjct: 108 CLKACPSAGAIIQYANGIVDFQS----ENCIGCGYCIAGCPFNIPRLNKEDN 155
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 448 IIKENKCIGCTLCIQSCPVDAI-IGAAKHMHTIFSKLCTGCD---------LCIKKCPVN 497
++ KCI C CI +CP DA + A ++ SK CT C C++ CP
Sbjct: 84 LVDPKKCIACGACIAACPYDARYLHPAGYV----SK-CTFCAHRLEKGKVPACVETCPTY 138
Query: 498 CI 499
C
Sbjct: 139 CR 140
Score = 28.8 bits (65), Expect = 3.2
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 17/67 (25%)
Query: 448 IIKENKCIGCTLCIQSC------PVDAI--------IGAAKHMHTIF-SKLCTGCD--LC 490
I + C+GC C +C P +G ++ F + C C+ C
Sbjct: 7 AIDLSLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPC 66
Query: 491 IKKCPVN 497
+ CP
Sbjct: 67 VPVCPTG 73
Score = 28.5 bits (64), Expect = 4.4
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 460 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCP 495
C+ CP A + + K C C CI CP
Sbjct: 66 CVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACP 101
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
cobalt(III), electron transport; HET: NCO; 1.50A
{Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
3pni_A
Length = 66
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 447 AIIKENKCIGCTLCIQSCP-----VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
+ ++ CIG +C CP D K +L ++ CPV+ I++
Sbjct: 4 VSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63
Query: 502 IE 503
E
Sbjct: 64 EE 65
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 39.4 bits (92), Expect = 0.003
Identities = 20/134 (14%), Positives = 32/134 (23%), Gaps = 34/134 (25%)
Query: 450 KENKCIGCTLCIQSCPVDAII-----------GAAKHMHTIFSKL--------------- 483
CI C C CP + I GA + + +K
Sbjct: 684 VPENCIQCNQCAFVCP-HSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTL 742
Query: 484 -CTGCDLCIKKCPVN--CISMIEVTPC----RTGWDAWSQKKADDARKRYYLRKKRLFHE 536
C GC C CP + M + + ++ K F E
Sbjct: 743 DCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYAARIPVKSEVLPRDSLKGSQFQE 802
Query: 537 KKENYAKLKKATIQ 550
++ +
Sbjct: 803 PLMEFSGACSGCGE 816
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 39.2 bits (91), Expect = 0.003
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD---------LCIKKCPVNC 498
+I ++KC G +CI CP I + + S+ C C +C + C
Sbjct: 211 LIDQDKCRGWRMCITGCPYKKIY---FNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRI 267
Query: 499 I 499
Sbjct: 268 R 268
Score = 31.1 bits (70), Expect = 1.1
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 460 CIQSCPVDAIIGAAKHMHT----IFSKLCTGCDLCIKKCPVNCISMIEVT 505
C+ +CP AI K I C G +CI CP I +
Sbjct: 192 CVATCPSGAIY---KREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKS 238
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 37.8 bits (88), Expect = 0.005
Identities = 21/126 (16%), Positives = 30/126 (23%), Gaps = 47/126 (37%)
Query: 386 QCTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRC 445
QC C P C K II ++ + C
Sbjct: 71 QCRHCIAPPC---------KAT----ADMEDESAIIH-----------------DDATGC 100
Query: 446 CAIIKEN-KCIGCTLCIQSCPVDA--IIGAAKHMHTIFSKLCTGC-DL--------CIKK 493
+ I +CP D + + M K C C D C+
Sbjct: 101 VLFTPKTKDLEDYESVISACPYDVPRKVAESNQMA----K-CDMCIDRITNGLRPACVTS 155
Query: 494 CPVNCI 499
CP +
Sbjct: 156 CPTGAM 161
Score = 33.1 bits (76), Expect = 0.17
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 460 CIQSCPVDAIIGAAKH------MHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506
C + ++ + T +K + I CP + + +
Sbjct: 80 CKATADMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESN 132
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 36.5 bits (84), Expect = 0.017
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 16/63 (25%)
Query: 448 IIKENKCIGCTLCIQSCPVDAII--GAAKHMHTIFSKLCTGCD---------LCIKKCPV 496
++ + +C G C+++CP AI ++ K C C C ++CP
Sbjct: 178 LVDQERCKGHRHCVEACPYKAIYFNPVSQTS----EK-CILCYPRIEKGIANACNRQCPG 232
Query: 497 NCI 499
Sbjct: 233 RVR 235
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 36.4 bits (84), Expect = 0.020
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 448 IIKENKCIGCTLCIQSCPVDAI 469
+I K G + +CP +
Sbjct: 93 LIDPEKAKGKKELLDTCPYGVM 114
Score = 29.1 bits (65), Expect = 3.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 448 IIKENKCIGCTLCIQSC 464
+I KC C C C
Sbjct: 7 VIDVAKCQDCNNCFMGC 23
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 36.7 bits (84), Expect = 0.023
Identities = 31/215 (14%), Positives = 63/215 (29%), Gaps = 25/215 (11%)
Query: 376 QFEQNLLPQTQCTKCGYPG-----CRQYAEAIANKKANYNQCPTGGRKGIIKLAKYLNKP 430
+ + ++ G P + E + + K + G + + +
Sbjct: 334 KLKIPVIASNPKIMYGLPNRTDADVDETMEELKSGKIPGCVMLDYDKLGELCVRLTMEMA 393
Query: 431 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPV-----DAIIGAAKHMHTIFSKL-- 483
I + + KC C C+ +CP +A+ A K + F ++
Sbjct: 394 PIRDAAGITALPTDEELVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHD 453
Query: 484 -CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEKKENYA 542
C GC C + C I + ++ A++ R + E +
Sbjct: 454 TCIGCRRCEQVCK----KEIPILNVIE--KIAQKQIAEEKGLMRAGRGQVSDAEIRAEGL 507
Query: 543 KLKKATIQFKK------NNRETQKSLIEMAVKRIK 571
L T N K + +A + +K
Sbjct: 508 NLVMGTTPGIIAIIGCPNYAGGTKDVYYIAEEFLK 542
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
geometry of [4Fe-4S] cluster, electron transport; 0.92A
{Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
1ir0_A 1wtf_A*
Length = 81
Score = 32.9 bits (75), Expect = 0.040
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 447 AIIKENKCIGCTLCIQSCP----------VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496
I+ + CI C C + P + + + + L + CP
Sbjct: 4 TIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPT 63
Query: 497 NCISMIE 503
+ I + +
Sbjct: 64 DSIKVAD 70
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE
dehydrogenase, metal-binding, NAD, NADP, oxidoreductase,
PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB:
1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Length = 334
Score = 35.6 bits (83), Expect = 0.042
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 170 IEILEQALRDDLDIKAPRIMAV--LNP 194
I IL+ L+ I P+I V LNP
Sbjct: 189 ITILDNDLKTKFGITQPQI-YVCGLNP 214
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
biosynthesis,oxidoreductase, structural GE PSI; 2.01A
{Pseudomonas aeruginosa}
Length = 328
Score = 34.8 bits (81), Expect = 0.058
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 170 IEILEQALRDDLDIKAPRIMAV--LNP 194
IL LRD I PRI V LNP
Sbjct: 184 ARILHADLRDKFGIAHPRI-LVCGLNP 209
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.072
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 529 RKKRLFHEKKENYAKLKKATI-QFKKNNRETQKSLIEMAVKRIKELKNKENKKIK 582
++KRL E +++ + KK+ E + E K + + +
Sbjct: 94 QRKRL-QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 30.3 bits (69), Expect = 0.17
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 451 ENKCIGCTLCIQSCP-VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIE 503
+ CIGC +C CP V + K CP IS+ E
Sbjct: 7 ADACIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISVEE 60
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 32.6 bits (74), Expect = 0.38
Identities = 1/23 (4%), Positives = 5/23 (21%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAI 469
++ P+ +
Sbjct: 6 HHHHHSQDPNSAAPAAEAPLSHV 28
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 31.7 bits (72), Expect = 0.77
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 126 KIVDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 156
DG D P LI + RG++ +
Sbjct: 326 FTPDGLGDVSGYPNLIAELLDRGWSQSDLAKLT 358
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 31.3 bits (71), Expect = 0.80
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 128 VDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 156
+DG++D +P + ++ GY+ I+
Sbjct: 367 MDGFEDITDLPKITARLKAEGYSDADIEAIW 397
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 30.6 bits (69), Expect = 1.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 128 VDGWDDPR-MPTLI-GMRRRGYTPESIK 153
VDGW D + + + RGY+ I
Sbjct: 366 VDGWKDVSEIRNVTAELITRGYSDADIA 393
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.9 bits (66), Expect = 1.8
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 515 SQKKADDARKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIE 564
+ A R+K + +E + + + K NNR K+ +
Sbjct: 114 QELDAASKVMEQEWREK-AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 162
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein;
LEFT-handed parallel beta helix, lipid A biosynthesis,
lipid synthesis; 2.10A {Arabidopsis thaliana}
Length = 305
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 139 LIGMRRRGYTPESIKLF---CKRIGVSKSDSWINIEILEQALRDDLDIKA-PRIMAVLNP 194
L G+RR G+T +K ++I +S ++ E L D ++ + P + A+L
Sbjct: 223 LEGLRRNGFTMSEMKSLRAAYRKIFMSTETVSLSFEERLTELEQDQELYSVPAVSAMLQS 282
Query: 195 IKLIISN 201
I+ +
Sbjct: 283 IRDSFTE 289
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 149 PESIKLFCKRIGVSKSDSWINIEILEQALRDDLDIKAPRIMAVLNPIKLIISNFLDNQEI 208
P + F + G+S S + ++ A+R + ++++ + LD+ +
Sbjct: 48 PSAQNKFPQMAGMSASQLRSSRQMQAHAIR---------VSSIMS---EYVEE-LDSDIL 94
Query: 209 ECTAPLFSRQHTQYKEKLRYFPI 231
+R H K ++ +
Sbjct: 95 PELLATLARTHDLNKVGADHYNL 117
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 29.5 bits (67), Expect = 3.0
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 139 LIGMRRRGYTPESIK 153
+ G++RRG++ E+I
Sbjct: 199 IEGLKRRGFSREAIT 213
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
ssgcid, beta helix, structural genomics, seattle
structural center for infectious disease, transferase;
1.80A {Burkholderia thailandensis}
Length = 283
Score = 29.6 bits (67), Expect = 3.1
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 139 LIGMRRRGYTPESIK 153
+ G+RRRG++P++I
Sbjct: 216 VEGLRRRGFSPDAIS 230
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 29.6 bits (67), Expect = 3.1
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 128 VDGWDDPR-MPTLI-GMRRRGYTPESIK 153
G P L + +RG ++
Sbjct: 281 PLGIRTVGEFPNLTETLLKRGMPERVVR 308
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 29.1 bits (66), Expect = 3.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 139 LIGMRRRGYTPESIK 153
+GM+R G++PE
Sbjct: 194 SVGMKRAGFSPEVRN 208
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 28.9 bits (64), Expect = 3.2
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 483 LCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKRLFHEKKENYA 542
L +G + P+ ++ V T + Y+ ++K EKKE
Sbjct: 64 LISG-PFKVNGVPLRRVNARYVIATSTKVSV-EGVNVEKFNVEYFAKEKLTKKEKKEANL 121
Query: 543 KLKKATIQFKKNNRETQKSL---IEMAVKRIKELK 574
++ + K E QK + + +K+ LK
Sbjct: 122 FPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLK 156
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 29.2 bits (63), Expect = 4.7
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 11 HVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD--------AI 62
V+ IN +S + + DP+I+ + H+ N C + Y +
Sbjct: 309 QVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLGYWSTQGCRLVE 368
Query: 63 ENITHSIC 70
N TH+ C
Sbjct: 369 SNKTHTTC 376
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 28.9 bits (65), Expect = 5.4
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 126 KIVDGWDDP-RMPTLI-GMRRRGYTPESIKLFC 156
++ +G +D + P LI + RR +T +K
Sbjct: 294 RVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 326
>2g09_A Cytosolic 5'-nucleotidase III; uniprot Q9D020, UMPH-1, pyrim
nucleotidase 1, P5N-1, NT5C3 protein, AAH38029,
BC038029, M LEAD poisoning; HET: PIN; 2.10A {Mus
musculus} PDB: 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A*
2g07_A* 2jga_A 2vkq_A 2cn1_A
Length = 297
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 262 GNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKLSSNYKVKGNIHWISKSHA 321
G R + + C +++++ +Y+ L+ K + W +KSH
Sbjct: 61 GKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPV-LTVEEKFPYMVEWYTKSHG 119
Query: 322 LSIEARL 328
L IE +
Sbjct: 120 LLIEQGI 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.7 bits (62), Expect = 7.3
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 524 KRYYLRKKRLFHEKKENYAK--LKKATIQFKKNNRETQKSLIEMAVKRIKELKNKENKKI 581
K + R K K + A+ LK ++ +++ +R E K
Sbjct: 98 KALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAASVVAREMKIVTERRAEKKADSRVTY 156
Query: 582 K 582
Sbjct: 157 S 157
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 28.1 bits (63), Expect = 7.4
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 128 VDGWDDP-RMPTLI-GMRRRGYTPESIKLFC 156
G D +P L MR GY ++ C
Sbjct: 313 PQGIADVTGLPALQAAMRAHGYDEPLMRKLC 343
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,107,585
Number of extensions: 556949
Number of successful extensions: 1559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 130
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)