RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9414
(582 letters)
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 152 bits (385), Expect = 3e-42
Identities = 104/182 (57%), Positives = 134/182 (73%), Gaps = 5/182 (2%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
MR+G F++G LR KI+M S I MRDP++YRI+ H++T N WCIYPMYD+ H ISD
Sbjct: 153 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISD 212
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLL 120
A+E ITHS+CTLEFQD+R Y+W+L+ N P+QYEFSRLNL +T+ SKRKL
Sbjct: 213 ALEGITHSLCTLEFQDNRRLYDWVLD-----NITIPVHPRQYEFSRLNLEYTVMSKRKLN 267
Query: 121 KLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALRDD 180
L+ K V+GWDDPRMPT+ G+RRRGYT SI+ FCKRIGV+K D+ I + LE +R+D
Sbjct: 268 LLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRED 327
Query: 181 LD 182
L+
Sbjct: 328 LN 329
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
C-terminal (anticodon-binding) domain {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 135 bits (340), Expect = 3e-37
Identities = 75/195 (38%), Positives = 100/195 (51%), Gaps = 15/195 (7%)
Query: 185 APRIMAVLNPIKLIISNFLDNQEIECTAPLFSRQHTQYKEK-LRYFPISKILWIERDDFM 243
APR MAV++P+KL+I N+ + T P H E R P S +WI+R DF
Sbjct: 1 APRAMAVIDPVKLVIENY-QGEGEMVTMPN----HPNKPEMGSRQVPFSGEIWIDRADFR 55
Query: 244 EIPTKKYFRLYPPIGKNSGNRVRLRYGYVVECTGFKKNKNNEVVEVYCKYFPDSKSGTKL 303
E K+Y RL G VRLR YV++ +K+ + ++C Y D+ S
Sbjct: 56 EEANKQYKRLVL------GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDP- 108
Query: 304 SSNYKVKGNIHWISKSHALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLE 363
+ KVKG IHW+S +HAL +E RLYDRLF P P DF +INP S + + E
Sbjct: 109 ADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPG--AADDFLSVINPESLVIKQGFAE 166
Query: 364 PNLKLIFPKKHAQFE 378
P+LK K QFE
Sbjct: 167 PSLKDAVAGKAFQFE 181
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 80.6 bits (198), Expect = 3e-17
Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 26/175 (14%)
Query: 7 KDGAHVLRVK---INMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIE 63
+ HV+R+K +R ++Y + + YP Y A+ + D +
Sbjct: 140 RGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPD-VVLLKSDGYPTYHLANVVDDHLM 198
Query: 64 NITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLLKLL 123
+T I E+ P + + P N T SKRK
Sbjct: 199 GVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLR-----NPDKTKISKRK----- 248
Query: 124 EKKIVDGWDDPRMPTLIGMRRRGYTPESIKLFCKRIGVSKSDSWINIEILEQALR 178
+L + G+ PE+++ + +G S D I LE+ ++
Sbjct: 249 -----------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR-EIFTLEEFIQ 291
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 71.3 bits (174), Expect = 4e-15
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 438 YGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII---GAAKHMHTIFSKLCTGCDLCIKKC 494
+ + A+I E CI C C +C + + CTGC LC+ C
Sbjct: 93 ELSNIEQVVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVC 152
Query: 495 PV-NCISMIEVTP 506
P+ +CI M+ T
Sbjct: 153 PIIDCIRMVSRTT 165
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 71.8 bits (175), Expect = 2e-14
Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 11/153 (7%)
Query: 1 MRSGEFKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISD 60
+ + A +R + + +R I + + Y+ A + D
Sbjct: 118 VLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDD 177
Query: 61 AIENITHSICTLEFQDHRPFYEWILNKIDKTNFIKRPFPKQYEFSRLNLTHTITSKRKLL 120
+ +T + + + + + + LN SK+
Sbjct: 178 HFQGVTEIVRGADLIEPTVRQISLYQLFG-----WKVPDYIHLPLALNPQGAKLSKQNHA 232
Query: 121 KLLEKKIVDGWDDPRMPTLIGMRRRGYTPESIK 153
L DPR + ++ G E+
Sbjct: 233 PALP------KGDPRPVLIAALQFLGQQAEAHW 259
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 61.9 bits (150), Expect = 4e-13
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
A + CI C C CPV+AI + I + C C C CPV+
Sbjct: 1 AYVINEACISCGACEPECPVNAISS-GDDRYVIDADTCIDCGACAGVCPVDAP 52
Score = 39.2 bits (91), Expect = 5e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 445 CCAIIKENKCIGCTLCIQSCPVDAIIGA 472
+I + CI C C CPVDA + A
Sbjct: 28 DRYVIDADTCIDCGACAGVCPVDAPVQA 55
Score = 33.8 bits (77), Expect = 0.003
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTP 506
C C C +CPVN IS +
Sbjct: 8 CISCGACEPECPVNAISSGDDRY 30
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId:
879]}
Length = 58
Score = 61.2 bits (148), Expect = 9e-13
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 451 ENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK--LCTGCDLCIKKCPVNCISM 501
+ C+ C C++ CP + + + + I CP I
Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIVR 57
Score = 38.8 bits (90), Expect = 7e-05
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 431 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII 470
I P E + I ++ I SCP +AI+
Sbjct: 17 ICPDVFEMNEEGDKAVVINPDSDLDCVEEAIDSCPAEAIV 56
Score = 28.1 bits (62), Expect = 0.40
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 484 CTGCDLCIKKCPVNCISMIE 503
C C+ C++ CP E
Sbjct: 8 CMACEACVEICPDVFEMNEE 27
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus
asaccharolyticus [TaxId: 1258]}
Length = 55
Score = 60.4 bits (146), Expect = 1e-12
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISM 501
A + + CI C C CPV+ I ++ I + C C C CPV +
Sbjct: 1 AYVINDSCIACGACKPECPVNCIQ--EGSIYAIDADSCIDCGSCASVCPVGAPNP 53
Score = 36.9 bits (85), Expect = 3e-04
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 445 CCAIIKENKCIGCTLCIQSCPVDAI 469
I + CI C C CPV A
Sbjct: 27 SIYAIDADSCIDCGSCASVCPVGAP 51
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 61.2 bits (148), Expect = 2e-12
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFS-KLCTGCDLCIKKCPVNCISMIE 503
I E KCIGC C Q CP AI G H+I + C C C+ CP N I +
Sbjct: 29 IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYEAQ 84
Score = 34.7 bits (79), Expect = 0.003
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
P I+G +I CI C C+ CP +AI
Sbjct: 45 PTAAIFGEMG-EPHSIPHIEACINCGQCLTHCPENAI 80
Score = 33.5 bits (76), Expect = 0.010
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 475 HMHTIFSKLCTGCDLCIKKCPVNCISMIE 503
H I C GCD C + CP I
Sbjct: 25 HFVQIDEAKCIGCDTCSQYCPTAAIFGEM 53
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 59.4 bits (143), Expect = 6e-12
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAI-------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCI 499
+ + CIGCT C+++CP D + A + + ++ C GC C CP + +
Sbjct: 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Query: 500 SM 501
S+
Sbjct: 63 SI 64
Score = 38.2 bits (88), Expect = 2e-04
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 432 IPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
+ + G + + + + C+GC C +CP D +
Sbjct: 25 LEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFL 62
Score = 35.1 bits (80), Expect = 0.003
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKAD 520
C GC C++ CP + + M+ C+ G A S + D
Sbjct: 10 CIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTED 46
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 58.3 bits (140), Expect = 3e-11
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 449 IKENKCIGCTLCIQSCPVDAI--------IGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500
+ + CI CI +CPV+ + K + + C C C+ CPV I
Sbjct: 40 VDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAID 99
Query: 501 M 501
+
Sbjct: 100 V 100
Score = 36.7 bits (84), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 431 IIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
+T + + E CI C C+ CPV AI
Sbjct: 60 FQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAI 98
Score = 36.3 bits (83), Expect = 0.001
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 470 IGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 512
+G + + LC CI CPVN +
Sbjct: 31 LGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEK 73
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria
(Desulfovibrio africanus) [TaxId: 873]}
Length = 64
Score = 55.6 bits (133), Expect = 9e-11
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMH---TIFSKLCTGCDLCIKKCPVNCISMIE 503
+ +++CI C C++ P + + + + CPV CI +
Sbjct: 6 VDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63
Score = 35.1 bits (80), Expect = 0.001
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 435 NTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
+ + ++ + +CPV I
Sbjct: 25 FAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCI 59
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 55.2 bits (132), Expect = 1e-10
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK-----LCTGCDLCIKKCPVNCISMIE 503
+ ++ CIG +C CP + L ++ CPV+ I++ E
Sbjct: 6 VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65
Score = 31.7 bits (71), Expect = 0.025
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 438 YGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
G + + I E +++CPV AI
Sbjct: 30 EGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 54.0 bits (129), Expect = 5e-10
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCIS 500
A++ ++CI C +C CP AI + I LCT C C++ CPV+CI
Sbjct: 1 ALMITDECINCDVCEPECPNGAISQ-GDETYVIEPSLCTECVGHYETSQCVEVCPVDCII 59
Query: 501 MIE 503
Sbjct: 60 KDP 62
Score = 34.3 bits (78), Expect = 0.004
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 445 CCAIIKENKCIGCT------LCIQSCPVDAII 470
+I+ + C C C++ CPVD II
Sbjct: 28 ETYVIEPSLCTECVGHYETSQCVEVCPVDCII 59
Score = 28.6 bits (63), Expect = 0.49
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 479 IFSKLCTGCDLCIKKCPVNCISMIEVTP 506
+ + C CD+C +CP IS + T
Sbjct: 3 MITDECINCDVCEPECPNGAISQGDETY 30
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 53.5 bits (128), Expect = 6e-10
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 447 AIIKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504
A + CIG C++ CPVD I + + I +C C C CPV+ I +
Sbjct: 1 AYVITEPCIGTKDASCVEVCPVDCIHEG-EDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 59
Query: 505 TPCRTGWDAWSQKKADDARK 524
P W ++ QK D +K
Sbjct: 60 VP--EEWKSYIQKNRDFFKK 77
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId:
2336]}
Length = 59
Score = 51.0 bits (121), Expect = 3e-09
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 448 IIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSK-LCTGCDLCIKKCPVNCISM 501
+ + CIGC +C CP +G + + CP IS+
Sbjct: 4 RVDADACIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAKDAADSCPTGAISV 58
Score = 30.2 bits (67), Expect = 0.072
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 440 NEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
+ + + E SCP AI
Sbjct: 27 GDDGKAKVLQPETDLPCAKDAADSCPTGAI 56
>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus
[TaxId: 1427]}
Length = 81
Score = 51.6 bits (123), Expect = 3e-09
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 447 AIIKENKCIGCTLCIQSCP----------VDAIIGAAKHMHTIFSKLCTGCDLCIKKCPV 496
I+ + CI C C + P + + + + L + CP
Sbjct: 4 TIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPT 63
Query: 497 NCISMIE 503
+ I + +
Sbjct: 64 DSIKVAD 70
Score = 29.7 bits (66), Expect = 0.19
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
+ ++ + + + CP D+I
Sbjct: 38 DDNQGIVEVPDILIDDMMDAFEGCPTDSI 66
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 50.6 bits (120), Expect = 9e-09
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAAKHMHTIFSKLCTGCD------LCIKKCPVNCIS 500
A+ + C C C++ CP +AI +K C+ C C CP +CI
Sbjct: 1 ALYINDDCTACDACVEECPNEAITPGDPIYVIDPTK-CSECVGAFDEPQCRLVCPADCIP 59
Query: 501 MIE 503
Sbjct: 60 DNP 62
Score = 30.2 bits (67), Expect = 0.12
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 445 CCAIIKENKCIGCT------LCIQSCPVDAIIGAAKHMHTI 479
+I KC C C CP D I + T
Sbjct: 28 PIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETR 68
Score = 25.9 bits (56), Expect = 3.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPC 507
CT CD C+++CP I+ +
Sbjct: 8 CTACDACVEECPNEAITPGDPIYV 31
>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 149
Score = 49.9 bits (118), Expect = 6e-08
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 449 IKENKCIGC-----TLCIQSCPVDAIIGAAKHMHT--IFSKLCTGCDLCIKKCPVNCISM 501
+ KC GC T C CP D + + M +C C C+K CP I +
Sbjct: 4 VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDMCWECYSCVKMCPQGAIDV 63
Score = 36.8 bits (84), Expect = 0.002
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCP 465
P + + +++ + + C C C++ CP
Sbjct: 25 PNDLMTLDKEKMKAYNREPDMCWECYSCVKMCP 57
Score = 29.1 bits (64), Expect = 0.79
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 484 CTGC-----DLCIKKCPVNCISMIEVTPC 507
C GC C CP + +++ +
Sbjct: 9 CDGCKALERTACEYICPNDLMTLDKEKMK 37
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 50.2 bits (119), Expect = 6e-08
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 449 IKENKCIGCTLCIQSCPVDAIIGAAKHM---------------HTIFSKLCTGCDLCIKK 493
KCIGC+LC +CP AI + I C C LC +
Sbjct: 23 NGLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEA 82
Query: 494 CPVNCISM 501
CP I +
Sbjct: 83 CPTGAIVL 90
Score = 32.5 bits (73), Expect = 0.057
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 441 EKSRCCAIIKENKCIGCTLCIQSCPVDAII 470
E+ I +CI C LC ++CP AI+
Sbjct: 60 ERYAKVYEINMLRCIFCGLCEEACPTGAIV 89
Score = 30.6 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCR 508
C GC LC CP I +
Sbjct: 28 CIGCSLCAAACPAYAIYVEPAENDP 52
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId:
274]}
Length = 77
Score = 47.4 bits (112), Expect = 9e-08
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 449 IKENKCIGC--TLCIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTP 506
+ CIG C++ CPV+ I I + C C C+ CPVN I E P
Sbjct: 3 VICEPCIGVKDQSCVEVCPVECIYDG-GDQFYIHPEECIDCGACVPACPVNAIYPEEDVP 61
Query: 507 CRTGWDAWSQKKAD 520
W ++ +K
Sbjct: 62 --EQWKSYIEKNRK 73
Score = 31.2 bits (70), Expect = 0.045
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 433 PLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAI 469
P+ IY I +CI C C+ +CPV+AI
Sbjct: 21 PVECIYDGGDQ---FYIHPEECIDCGACVPACPVNAI 54
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 47.1 bits (111), Expect = 1e-07
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 448 IIKENKCIGCTLCIQSCPVDAIIG-------------AAKHMHTIFSKLCTGCDLCIKKC 494
+ KC+ C C+ +C + A+ C C CI C
Sbjct: 15 TVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIAC 74
Query: 495 PVNCISM 501
PV +S
Sbjct: 75 PVAALSE 81
Score = 30.6 bits (68), Expect = 0.11
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 445 CCAIIKENKCIGCTLCIQSCPVDAI 469
+ C+ C CI +CPV A+
Sbjct: 55 DEKCFDDTNCLLCGQCIIACPVAAL 79
Score = 26.7 bits (58), Expect = 2.1
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 484 CTGCDLCIKKCPVNCISMIEVTPCRTGW 511
C C C+ C N + + G
Sbjct: 21 CLLCGRCVNACGKNTETYAMKFLNKNGK 48
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId:
354]}
Length = 106
Score = 46.6 bits (110), Expect = 4e-07
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 447 AIIKENKCIGCTL--CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEV 504
A + + CI C C++ CPVD + I C C LC +CP I +
Sbjct: 1 AFVVTDNCIKCKYTDCVEVCPVDCFYEG-PNFLVIHPDECIDCALCEPECPAQAIFSED- 58
Query: 505 TPCRTGWDAWSQKKADDARKRY 526
+ Q A+ A
Sbjct: 59 -EVPEDMQEFIQLNAELAEVWP 79
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 46.0 bits (108), Expect = 7e-07
Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 28/88 (31%)
Query: 447 AIIKENKCIGCTLCIQSCPVDAIIGAA--------------------------KHMHTIF 480
CI C C CP AI+ K I
Sbjct: 14 PQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQIN 73
Query: 481 SKLCTGCDLCIKKCPVN--CISMIEVTP 506
+ C GC C CP + M +
Sbjct: 74 TLDCMGCGNCADICPPKEKALVMQPLDT 101
Score = 32.2 bits (72), Expect = 0.045
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 483 LCTGCDLCIKKCPVNCISMIEVTPCRTGWDAWSQKKADDARKRYYLRKKR 532
C C+ C CP + I + A + A +A+ + K
Sbjct: 20 NCIQCNQCAFVCPHSAILPVLAKEEELV-GAPANFTALEAKGKELKGYKF 68
Score = 31.4 bits (70), Expect = 0.080
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 412 CPTGGRKGIIKLAKYLNKPIIPLNTIY----GNEKSRCCAIIKENKCIGCTLCIQSCPVD 467
CP ++ + L + + + I C+GC C CP
Sbjct: 31 CPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPK 90
Query: 468 AI 469
Sbjct: 91 EK 92
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 39.7 bits (92), Expect = 2e-04
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 448 IIKENKCIGCTLCIQSCP----VDAIIGAAKHMHTIFSKL-----CTGCDLCIKKCPVNC 498
I+ +CI C C++ + + + +HT + CPV
Sbjct: 80 ILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGA 139
Query: 499 I 499
+
Sbjct: 140 L 140
Score = 26.6 bits (58), Expect = 5.1
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 434 LNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPVDAII 470
L+ I + + CPV A++
Sbjct: 105 LDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALL 141
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 36.9 bits (85), Expect = 4e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 451 ENKCIGCT--LCIQSCPVDAI-IGAAKHMHTIFSKLCTGCDLCIKKCPVNCIS 500
E C + +CP A+ + + C C C CP +
Sbjct: 9 EAIRKTCEIPSTVAACPTGALKPDMKNKTIKVDVEKCMYCGNCYTMCPGMPLF 61
Score = 32.3 bits (73), Expect = 0.018
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 449 IKENKCIGCTLCIQSCPVDAII 470
+ KC+ C C CP +
Sbjct: 40 VDVEKCMYCGNCYTMCPGMPLF 61
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 452 NKCIGCTL--CIQSCPVDAIIGAAKHMHTIF-SKLCTGCDLCIKKCPVNCISMIEVTPCR 508
C C C+ +CP AI + + C G +CI CP I +
Sbjct: 182 RLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKS 241
Query: 509 TGWDAWSQKKAD 520
+
Sbjct: 242 EKCIFCYPRIEA 253
Score = 38.2 bits (88), Expect = 0.003
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 448 IIKENKCIGCTLCIQSCPVDAII-----GAAKHMHTIFSKLCTG-CDLCIKKCPVNCI 499
+I ++KC G +CI CP I G ++ + ++ G +C + C
Sbjct: 211 LIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIR 268
Score = 31.6 bits (71), Expect = 0.25
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 448 IIKENKCIGCTLCIQSCPVDAI 469
++ +KCIGC C +C
Sbjct: 10 VLNLDKCIGCHTCSVTCKNVWT 31
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 31.0 bits (69), Expect = 0.29
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 446 CAIIKENKCIGCTLCIQSCPVDAII---GAAKHMHTIFSKLCTGCDL---CIKKCPVNCI 499
+ CIGC CI CP + + C+K CP I
Sbjct: 124 IVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAI 183
Score = 28.7 bits (63), Expect = 1.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 439 GNEKSRCCAIIKENKCIGCTLCIQSC 464
+ K+ +I + CIGC C +C
Sbjct: 23 RDYKAEVAKLIDVSTCIGCKACQVAC 48
Score = 27.1 bits (59), Expect = 5.0
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 6/112 (5%)
Query: 407 ANYNQCPTGGRKGIIKLAKYLNKPIIPLNTIYGNEKSRCCAIIKENKCIGCTLCIQSCPV 466
+ +N + + + +E + + + GC C +
Sbjct: 49 SEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCL 108
Query: 467 DAIIGAAKHMHT------IFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWD 512
A A + S+ C GC CI CP N + +
Sbjct: 109 KACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCT 160
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
562]}
Length = 416
Score = 28.8 bits (64), Expect = 1.9
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 321 ALSIEARLYDRLFIDPYPNIVNNKDFKLLINPNSKKVISAYLEPNLKLIFPKKHAQFEQN 380
S D ++D + IV + + N+ +++ A +E + FE
Sbjct: 134 QWSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAV------HFEDQ 187
Query: 381 LLPQTQCTKCGYPGCRQYAEAIANKKA 407
L +C G EAI A
Sbjct: 188 LASVKKCGHMGGKVLVPTQEAIQKLVA 214
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 27.7 bits (60), Expect = 3.3
Identities = 6/54 (11%), Positives = 12/54 (22%)
Query: 460 CIQSCPVDAIIGAAKHMHTIFSKLCTGCDLCIKKCPVNCISMIEVTPCRTGWDA 513
+ A+ + I + G + CP + E
Sbjct: 75 PCVAKGNGAVYQREDGIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVAQKCTM 128
Score = 27.7 bits (60), Expect = 3.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 448 IIKENKCIGCTLCIQSC 464
+I KC C C C
Sbjct: 7 VIDVAKCQDCNNCFMGC 23
>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 369
Score = 27.8 bits (61), Expect = 3.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 126 KIVDGWDDPR-MPTLI-GMRRRGYTPESIKLFC 156
++ +G +D P LI + RR +T +K
Sbjct: 294 RVPEGLEDVSKYPDLIAELLRRNWTEAEVKGAL 326
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 26.6 bits (58), Expect = 5.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 268 RYGYVVECTGFKKNKNNEVVEVYCKYFPDSK 298
Y V + KK NE+VE + KYF +SK
Sbjct: 105 WYKIYVPYSSVKKKNRNELVEEFMKYFFESK 135
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (56), Expect = 5.4
Identities = 9/57 (15%), Positives = 29/57 (50%)
Query: 523 RKRYYLRKKRLFHEKKENYAKLKKATIQFKKNNRETQKSLIEMAVKRIKELKNKENK 579
R+ + + +++ +E K ++ L+ + + N + + +++ A I ++ +E K
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63
>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase,
small subunit {Desulfovibrio gigas [TaxId: 879]}
Length = 214
Score = 26.8 bits (58), Expect = 6.1
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 448 IIKENKCIGCTLCIQSC 464
+ +C C C +C
Sbjct: 5 FVDTTRCTACRGCQVAC 21
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 26.3 bits (57), Expect = 7.6
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 6 FKDGAHVLRVKINMKSKNINMRDPIIYRIRHVNHYRTNNNWCIYPMYDYAHPISDAIENI 65
++ G + L +KI + I +I H N C+ + D + + +
Sbjct: 51 YEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA-AMTLRTV 109
Query: 66 THSICTL 72
S+ L
Sbjct: 110 LLSLQAL 116
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 25.3 bits (55), Expect = 9.2
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 369 IFPKKHAQFEQNLLPQTQ-CTKCGYPGCRQYAEAIANKKANYNQCPTGGRKGIIKLAKYL 427
+ P++H Q +LP Q + G LA
Sbjct: 28 LCPREHTQ---RILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGA 84
Query: 428 NKPIIPLNTI 437
P+I ++T+
Sbjct: 85 ELPMIGVSTL 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,346,671
Number of extensions: 120683
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 102
Length of query: 582
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,171,896
Effective search space: 576572832
Effective search space used: 576572832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)