Query psy9416
Match_columns 344
No_of_seqs 196 out of 1359
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:37:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 4.3E-48 9.2E-53 361.3 21.4 219 3-240 18-236 (236)
2 cd09286 NMNAT_Eukarya Nicotina 100.0 2.8E-47 6.1E-52 353.5 20.8 224 8-239 1-225 (225)
3 PRK06973 nicotinic acid mononu 100.0 8.1E-47 1.8E-51 354.0 20.4 198 6-240 21-242 (243)
4 TIGR00482 nicotinate (nicotina 100.0 9.7E-47 2.1E-51 341.7 18.7 191 11-239 1-193 (193)
5 PRK00071 nadD nicotinic acid m 100.0 3.9E-46 8.4E-51 340.1 19.8 195 8-240 5-202 (203)
6 COG1057 NadD Nicotinic acid mo 100.0 2.7E-46 5.9E-51 340.1 18.4 192 6-240 2-196 (197)
7 KOG3199|consensus 100.0 2.5E-43 5.3E-48 316.7 18.7 226 4-242 5-233 (234)
8 cd02165 NMNAT Nicotinamide/nic 100.0 4E-43 8.7E-48 317.3 18.5 191 9-239 1-192 (192)
9 PRK08887 nicotinic acid mononu 100.0 8.7E-42 1.9E-46 305.3 16.3 165 9-242 4-173 (174)
10 PRK07152 nadD putative nicotin 100.0 1.3E-41 2.8E-46 333.1 18.8 184 9-243 3-188 (342)
11 TIGR01510 coaD_prev_kdtB pante 100.0 9.6E-32 2.1E-36 236.1 12.5 153 10-236 2-154 (155)
12 cd02163 PPAT Phosphopantethein 100.0 4.4E-31 9.6E-36 231.5 11.2 152 10-235 2-153 (153)
13 PRK00168 coaD phosphopantethei 100.0 1E-29 2.3E-34 224.1 13.8 154 9-236 3-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 99.9 3.2E-28 6.9E-33 207.9 8.9 155 11-214 1-157 (157)
15 cd02168 NMNAT_Nudix Nicotinami 99.8 9.1E-20 2E-24 164.3 14.3 156 10-236 2-165 (181)
16 TIGR01527 arch_NMN_Atrans nico 99.8 1.2E-19 2.7E-24 161.2 14.6 153 10-237 2-155 (165)
17 cd02166 NMNAT_Archaea Nicotina 99.8 1.6E-19 3.4E-24 160.1 13.6 151 10-239 2-159 (163)
18 COG0669 CoaD Phosphopantethein 99.8 1E-18 2.2E-23 152.1 13.9 156 6-236 2-157 (159)
19 PRK01153 nicotinamide-nucleoti 99.8 1.8E-18 4E-23 154.9 12.9 61 10-76 3-64 (174)
20 cd02039 cytidylyltransferase_l 99.8 1E-18 2.2E-23 148.1 10.5 139 10-214 2-143 (143)
21 PRK05379 bifunctional nicotina 99.7 1.3E-17 2.7E-22 163.8 14.2 164 1-237 1-172 (340)
22 PRK13964 coaD phosphopantethei 99.7 3.9E-17 8.4E-22 141.5 13.8 137 9-218 3-139 (140)
23 cd02167 NMNAT_NadR Nicotinamid 99.7 1.1E-16 2.4E-21 141.3 11.8 71 10-87 2-74 (158)
24 TIGR01526 nadR_NMN_Atrans nico 99.7 4.1E-17 8.8E-22 159.3 8.8 191 9-275 3-198 (325)
25 PRK08099 bifunctional DNA-bind 99.7 1.4E-16 3E-21 159.6 12.3 192 6-275 51-255 (399)
26 cd02169 Citrate_lyase_ligase C 99.6 4.2E-15 9E-20 143.6 10.2 69 6-85 114-182 (297)
27 smart00764 Citrate_ly_lig Citr 99.6 3.2E-14 6.9E-19 128.5 14.2 58 15-82 7-64 (182)
28 PRK13793 nicotinamide-nucleoti 99.6 4.3E-14 9.4E-19 128.6 13.7 64 6-75 3-67 (196)
29 TIGR00124 cit_ly_ligase [citra 99.5 1.5E-13 3.4E-18 134.6 12.9 67 8-84 140-206 (332)
30 cd02170 cytidylyltransferase c 99.5 6.1E-13 1.3E-17 113.8 12.1 130 6-216 1-134 (136)
31 TIGR00339 sopT ATP sulphurylas 99.5 1.4E-12 2.9E-17 130.1 16.0 177 6-234 184-382 (383)
32 PRK00777 phosphopantetheine ad 99.4 1.1E-12 2.5E-17 115.3 10.2 59 8-74 3-65 (153)
33 TIGR00125 cyt_tran_rel cytidyl 99.3 1.1E-11 2.5E-16 92.6 6.3 60 10-75 2-64 (66)
34 cd02171 G3P_Cytidylyltransfera 99.2 4E-10 8.6E-15 95.5 11.9 61 6-71 1-62 (129)
35 cd02064 FAD_synthetase_N FAD s 99.1 6.7E-10 1.4E-14 99.8 12.6 67 12-83 4-78 (180)
36 cd02164 PPAT_CoAS phosphopante 99.0 1.2E-09 2.5E-14 95.2 7.8 60 11-75 3-66 (143)
37 cd02174 CCT CTP:phosphocholine 99.0 8.7E-09 1.9E-13 90.4 13.3 70 7-80 3-73 (150)
38 COG1056 NadR Nicotinamide mono 99.0 3.4E-09 7.4E-14 94.7 9.3 61 9-75 5-66 (172)
39 PF08218 Citrate_ly_lig: Citra 98.9 5.6E-09 1.2E-13 93.3 10.2 58 15-82 7-64 (182)
40 cd02173 ECT CTP:phosphoethanol 98.9 2.6E-08 5.6E-13 87.6 12.8 68 9-81 4-74 (152)
41 cd02156 nt_trans nucleotidyl t 98.7 1.2E-08 2.6E-13 83.6 5.1 54 11-71 3-58 (105)
42 TIGR01518 g3p_cytidyltrns glyc 98.7 7.5E-08 1.6E-12 81.4 8.7 54 12-70 3-58 (125)
43 COG3053 CitC Citrate lyase syn 98.7 4.4E-08 9.6E-13 93.5 6.7 68 15-92 153-224 (352)
44 PTZ00308 ethanolamine-phosphat 98.6 7.5E-07 1.6E-11 88.3 13.2 69 8-81 193-264 (353)
45 PLN02406 ethanolamine-phosphat 98.5 1.7E-06 3.7E-11 87.2 14.2 86 8-104 54-140 (418)
46 PRK13671 hypothetical protein; 98.5 1.4E-07 3.1E-12 91.3 5.7 54 13-71 6-61 (298)
47 PLN02388 phosphopantetheine ad 98.4 3.7E-06 8.1E-11 75.8 13.0 64 7-75 20-86 (177)
48 TIGR02199 rfaE_dom_II rfaE bif 98.4 2E-06 4.4E-11 74.7 10.8 60 6-71 11-74 (144)
49 PRK01170 phosphopantetheine ad 98.4 1.1E-06 2.4E-11 85.9 8.4 60 9-74 3-63 (322)
50 TIGR00083 ribF riboflavin kina 98.4 5.3E-06 1.2E-10 80.2 12.6 69 12-83 3-76 (288)
51 PRK05627 bifunctional riboflav 98.4 1.1E-05 2.4E-10 78.6 14.8 71 10-83 16-92 (305)
52 PRK07143 hypothetical protein; 98.3 1.1E-05 2.4E-10 77.7 13.5 68 7-83 16-87 (279)
53 cd02172 RfaE_N N-terminal doma 98.3 2.5E-05 5.3E-10 68.0 13.7 56 10-70 7-64 (144)
54 PF01747 ATP-sulfurylase: ATP- 98.1 0.00025 5.4E-09 65.9 16.3 174 6-235 21-213 (215)
55 COG1019 Predicted nucleotidylt 97.9 1.4E-05 3.1E-10 69.9 5.4 66 1-73 1-68 (158)
56 PTZ00308 ethanolamine-phosphat 97.9 0.00013 2.8E-09 72.6 12.4 56 8-70 12-71 (353)
57 PRK13670 hypothetical protein; 97.8 0.00015 3.3E-09 72.9 10.8 61 6-71 1-62 (388)
58 cd00517 ATPS ATP-sulfurylase. 97.7 0.0014 3E-08 65.3 15.5 177 7-235 158-352 (353)
59 COG0196 RibF FAD synthase [Coe 97.7 0.00061 1.3E-08 66.4 12.4 70 12-84 20-95 (304)
60 PRK05537 bifunctional sulfate 97.6 0.0012 2.6E-08 69.6 14.9 201 6-264 187-417 (568)
61 PRK11316 bifunctional heptose 97.6 0.00072 1.6E-08 69.0 12.6 66 7-78 341-409 (473)
62 PRK04149 sat sulfate adenylylt 97.6 0.0029 6.2E-08 63.8 15.8 174 7-236 188-380 (391)
63 PLN02413 choline-phosphate cyt 97.5 0.002 4.3E-08 62.1 13.5 68 8-78 28-96 (294)
64 COG2046 MET3 ATP sulfurylase ( 97.4 0.0041 8.9E-08 61.8 14.5 175 7-236 184-376 (397)
65 COG0615 TagD Cytidylyltransfer 97.3 0.00031 6.8E-09 61.0 4.8 56 9-70 4-62 (140)
66 COG1323 Predicted nucleotidylt 96.8 0.0042 9E-08 61.8 7.7 64 7-74 2-65 (358)
67 PF05636 HIGH_NTase1: HIGH Nuc 96.3 0.0054 1.2E-07 61.8 4.9 62 6-71 1-62 (388)
68 PF06574 FAD_syn: FAD syntheta 96.2 0.013 2.8E-07 51.8 6.7 75 6-84 5-85 (157)
69 KOG2803|consensus 95.4 0.027 5.9E-07 54.9 5.7 65 2-70 3-68 (358)
70 PLN02406 ethanolamine-phosphat 95.4 0.028 6E-07 57.2 5.8 68 8-80 252-322 (418)
71 KOG3351|consensus 93.6 0.072 1.6E-06 50.5 3.7 70 11-85 146-220 (293)
72 COG2870 RfaE ADP-heptose synth 91.4 1.8 3.9E-05 44.1 10.4 127 9-218 334-466 (467)
73 PLN02660 pantoate--beta-alanin 82.8 3.8 8.3E-05 39.8 6.8 50 19-71 32-84 (284)
74 TIGR00018 panC pantoate--beta- 80.4 4.7 0.0001 39.1 6.5 50 19-71 33-85 (282)
75 KOG2803|consensus 79.9 2.9 6.2E-05 41.2 4.8 28 8-35 199-226 (358)
76 cd00560 PanC Pantoate-beta-ala 79.4 5.6 0.00012 38.5 6.6 50 19-71 33-85 (277)
77 KOG4238|consensus 77.0 16 0.00035 37.0 9.1 58 14-74 422-481 (627)
78 PRK00380 panC pantoate--beta-a 76.1 6.4 0.00014 38.1 6.0 50 19-71 33-85 (281)
79 KOG2804|consensus 71.7 8.7 0.00019 37.7 5.6 58 7-69 63-124 (348)
80 PF00837 T4_deiodinase: Iodoth 59.0 73 0.0016 30.3 9.1 79 3-83 100-190 (237)
81 PF02569 Pantoate_ligase: Pant 55.5 25 0.00055 34.1 5.6 54 15-71 29-85 (280)
82 PRK13477 bifunctional pantoate 50.7 32 0.00068 36.3 5.8 56 13-71 25-83 (512)
83 PRK15364 pathogenicity island 36.6 37 0.00081 31.0 3.2 23 218-240 92-114 (196)
84 COG1019 Predicted nucleotidylt 36.5 43 0.00093 29.8 3.5 51 165-215 92-146 (158)
85 PRK13660 hypothetical protein; 36.0 3.4E+02 0.0073 24.7 12.8 138 62-234 30-176 (182)
86 COG0414 PanC Panthothenate syn 32.8 88 0.0019 30.5 5.2 55 14-71 28-85 (285)
87 PRK13671 hypothetical protein; 32.7 36 0.00079 33.3 2.7 31 205-235 195-225 (298)
88 TIGR02069 cyanophycinase cyano 31.1 2.5E+02 0.0054 26.6 8.1 27 134-163 83-109 (250)
89 cd03145 GAT1_cyanophycinase Ty 26.9 3.8E+02 0.0081 24.5 8.3 25 134-161 84-108 (217)
90 COG0162 TyrS Tyrosyl-tRNA synt 24.6 2.7E+02 0.0059 28.5 7.4 54 13-69 40-93 (401)
91 KOG0564|consensus 24.0 77 0.0017 33.4 3.4 37 70-106 110-146 (590)
92 COG3172 NadR Predicted ATPase/ 20.3 35 0.00076 31.0 0.1 30 237-272 12-41 (187)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=4.3e-48 Score=361.32 Aligned_cols=219 Identities=44% Similarity=0.745 Sum_probs=183.1
Q ss_pred cccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 3 SAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 3 ~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
.++..+|+||||||||||+||+.|++.|++.+..++..+|+++++|++++|+|+..+++++|++||++|+++++++.|++
T Consensus 18 ~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~V~~ 97 (236)
T PLN02945 18 GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACEDSDFIMVDP 97 (236)
T ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEecH
Confidence 35678899999999999999999999999999887666667789999999998888999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
||+.+++++||++||+++++.|+.. +. +...+.+++||||+|++.+|.+|+.|+++..++|
T Consensus 98 ~E~~~~~~syT~dtL~~l~~~~~~~-------~~------------~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l 158 (236)
T PLN02945 98 WEARQSTYQRTLTVLARVETSLNNN-------GL------------ASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTI 158 (236)
T ss_pred HHhCCCCCccHHHHHHHHHHHhccc-------cc------------cCCCCceEEEEechhHHHhcCCCCcCCHHHHHHH
Confidence 9999999999999999999998210 00 0001479999999999999997777998444669
Q ss_pred hhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 163 AGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 163 l~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
++.++|||+.|+|.+.+....+...+.....++++++.....+||||+||+++++|+++.++||+.|.+||.+|+||.
T Consensus 159 ~~~~~~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~~lvP~~V~~YI~~~~LY~ 236 (236)
T PLN02945 159 CRDYGVVCIRREGQDVEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVKYLTPDGVIDYIKEHGLYM 236 (236)
T ss_pred HHhCCEEEEeCCCCCHHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCCC
Confidence 999999999999987543222222344444567777543248899999999999999999999999999999999994
No 2
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=2.8e-47 Score=353.54 Aligned_cols=224 Identities=52% Similarity=0.928 Sum_probs=181.9
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
+|++|||||||||+||+.|++.|++.++.++. .|++++++|++.+++|+..+++++|++||++|++++++++|++||+.
T Consensus 1 ~~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 1 VVLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred CEEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 57889999999999999999999999988753 57777899999999998889999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
+++++||++||+++++.|+.. -|.-+.....++ ...+.+.+++||||+|++.+|.+|+.|+++++++|++.+
T Consensus 81 ~~~~syT~~TL~~l~~~~p~~---~~~~~~~~~~~~-----~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~ 152 (225)
T cd09286 81 QPEWMRTAKVLRHHREEINNK---YGGIEGAAKRVL-----DGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEF 152 (225)
T ss_pred CCccccHHHHHHHHHHHhccc---cccccccccccc-----ccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhC
Confidence 999999999999999998310 000000000000 112335799999999999999977779965589999999
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCC
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY 239 (344)
+|+|+.|+|.+....+...+.+.++..++.+++.....+||||+||+++++|++++++||++|.+||.+|+||
T Consensus 153 ~~vv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~~~llp~~V~~YI~~~~LY 225 (225)
T cd09286 153 GLVVVERTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVKYLLPDPVIEYIEQHQLY 225 (225)
T ss_pred CEEEEeCCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 9999999998754332222234455567888765334699999999999999999999999999999999999
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=8.1e-47 Score=353.96 Aligned_cols=198 Identities=20% Similarity=0.271 Sum_probs=167.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC----CCeEEe
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS----TWIKLS 81 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~----~~i~V~ 81 (344)
.+.++||||||||||+||+.|++.|++.++.+ +|+ |+|++.+|+|+..+++++|++||++|+++. +++.|+
T Consensus 21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld--~v~---~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~ 95 (243)
T PRK06973 21 PRRIGILGGTFDPIHDGHLALARRFADVLDLT--ELV---LIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVRVA 95 (243)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHHcCCC--EEE---EEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence 34466799999999999999999999999999 996 899999999977889999999999999964 489999
Q ss_pred ccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHH
Q psy9416 82 EWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINH 161 (344)
Q Consensus 82 d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~ 161 (344)
++|+++++++||++||++|+++|+ | +.++|||||+|++.+|. +|++ +++
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~------p--------------------~~~~~fiiG~D~l~~l~---~W~~--~~~ 144 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIG------P--------------------DASLALLIGADQLVRLD---TWRD--WRR 144 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcC------C--------------------CCCEEEEEchhhHhhcC---Cccc--HHH
Confidence 999999999999999999999983 2 47899999999999998 7998 899
Q ss_pred HhhcCCEEEEcCCCCCchhhhh-----------hhhhhhhcCCeEEEEe-ccccccccHHHHHHHHHcC--------CCc
Q psy9416 162 IAGHHGIVVITRGDTNPAKFIY-----------QHDILSKHMNKIIIVN-EWIKNEISSTYLRRALRRG--------DSI 221 (344)
Q Consensus 162 il~~~~~vVv~R~g~~~~~~~~-----------~~~~L~~~~~~i~~l~-~~~~~~ISST~IR~~l~~g--------~~i 221 (344)
|++.++|||+.|+|++..+... ....+.......+++. .+ ..+||||+||+++++| +++
T Consensus 145 L~~~~~lvV~~R~g~~~~~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~~~-~~~ISST~IR~~l~~g~~~~~~~~~~i 223 (243)
T PRK06973 145 LFDYAHLCAATRPGFDLGAASPAVAAEIAARQADADVLQATPAGHLLIDTTL-AFDLSATDIRAHLRACIARRAQVPDAS 223 (243)
T ss_pred HHHhCCEEEEECCCCCcccchhHHHHHHhhhhhhhhhhhcCCCceEEEcCCC-cccccHHHHHHHHHcCCCcccccCCCh
Confidence 9999999999999976432110 0111222222334443 44 5899999999999999 999
Q ss_pred cCCCcHHHHHHHHHcCCCC
Q psy9416 222 KYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 222 ~~lVP~~V~~YI~~~~LY~ 240 (344)
.++||++|++||.+|+||.
T Consensus 224 ~~lvP~~V~~YI~~~~LY~ 242 (243)
T PRK06973 224 AEHVPAAVWAYILQHRLYH 242 (243)
T ss_pred hHhCCHHHHHHHHHcCCCC
Confidence 9999999999999999996
No 4
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=9.7e-47 Score=341.72 Aligned_cols=191 Identities=31% Similarity=0.488 Sum_probs=167.6
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC--CCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK--DLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~--~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
||||||||||+||+.|++.|++.++.+ +|+ ++|+..+|+|+ ..+++++|++||++|+++++++.|+++|++++
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d--~v~---~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 75 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLD--KVI---FVPTANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRG 75 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCC--EEE---EEeCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCC
Confidence 489999999999999999999999888 885 88999998875 45899999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
+++||++||++|+++| | +.+++||||+|++.+|. +|++ +++|++.++|
T Consensus 76 ~~syT~~tl~~l~~~~-------p--------------------~~~~~~iiG~D~l~~l~---~W~~--~~~i~~~~~~ 123 (193)
T TIGR00482 76 GPSYTIDTLKHLKKKY-------P--------------------DVELYFIIGADALRSFP---LWKD--WQELLELVHL 123 (193)
T ss_pred CCCCHHHHHHHHHHHC-------C--------------------CCeEEEEEcHHHhhhhc---cccC--HHHHHHhCcE
Confidence 9999999999999998 4 48999999999999998 8998 9999999999
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCC
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY 239 (344)
+|++|+|++.+..............+|.+++.+ ..+||||+||+++++|+++.++||++|++||.+|+||
T Consensus 124 iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~iSST~IR~~l~~g~~~~~lvP~~V~~YI~~~~LY 193 (193)
T TIGR00482 124 VIVPRPGYTLDKALLEKAILRMHHGNLTLLHNP-RVPISSTEIRQRIRQGKSIEYLLPDPVIKYIKQHGLY 193 (193)
T ss_pred EEEeCCCCCcchhhhHHHHhcccCCcEEEEcCC-ccccCHHHHHHHHHcCCCchhhCCHHHHHHHHHhCCC
Confidence 999999986432211000001123468888877 4899999999999999999999999999999999999
No 5
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=3.9e-46 Score=340.11 Aligned_cols=195 Identities=25% Similarity=0.357 Sum_probs=169.8
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC--CCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK--DLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~--~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
.++||||||||||+||+.|++.|++.++.+ +|+ ++|+..+++|+ ..++.++|++||++|+++.+++.|+++|+
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d--~v~---~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEEAAERLGLD--EVW---FLPNPGPPHKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHHHHHHcCCC--EEE---EEeCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 356699999999999999999999988877 875 78888877764 57899999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
.+++++||++||+++++.| | +.+++||||+|++.+|. +|++ +++|++.
T Consensus 80 ~~~~~syT~~tl~~l~~~~-------p--------------------~~~~~fiiG~D~l~~l~---~W~~--~~~i~~~ 127 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARY-------P--------------------DVELVFIIGADALAQLP---RWKR--WEEILDL 127 (203)
T ss_pred hCCCCCCHHHHHHHHHHHC-------C--------------------CCcEEEEEcHHHhhhcc---cccC--HHHHHHh
Confidence 9999999999999999998 4 48999999999999998 7998 8999999
Q ss_pred CCEEEEcCCCCCchhhh-hhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 166 HGIVVITRGDTNPAKFI-YQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~-~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
++++|++|+|.+..... .....+.....++.+++.+ ..+||||+||+++++|+++.++||+.|.+||++|+||+
T Consensus 128 ~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ISST~IR~~l~~g~~~~~lvp~~V~~YI~~~~LY~ 202 (203)
T PRK00071 128 VHFVVVPRPGYPLEALALPALQQLLEAAGAITLLDVP-LLAISSTAIRERIKEGRPIRYLLPEAVLDYIEKHGLYR 202 (203)
T ss_pred CcEEEEeCCCCCccccchhHHHHhhccCCCEEEEeCC-CCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHhCccC
Confidence 99999999998643211 0011122224678999877 58999999999999999999999999999999999996
No 6
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-46 Score=340.07 Aligned_cols=192 Identities=32% Similarity=0.450 Sum_probs=170.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC--CCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK--DLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~--~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
++.++||||||||||.||+.||+.|.+.++.+ +|+ ++|+..+|+|+ ..+|.+||++||++|+++.+.++|+++
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld--~vi---~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~ 76 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLD--KVI---FLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDR 76 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCC--eEE---EecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHH
Confidence 44556699999999999999999999999999 986 89999999886 489999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHh
Q psy9416 84 EAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIA 163 (344)
Q Consensus 84 E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il 163 (344)
|+.+.+++||++||++++++++ | +.++|||||+|++.+|. +|++ +++|+
T Consensus 77 e~~r~g~sYT~dTl~~~~~~~~------p--------------------~~~~~fIiGaD~l~~l~---~W~~--~~ell 125 (197)
T COG1057 77 EIKRGGPSYTIDTLEHLRQEYG------P--------------------DVELYFIIGADNLASLP---KWYD--WDELL 125 (197)
T ss_pred HHHcCCCcchHHHHHHHHHHhC------C--------------------CCcEEEEEehHHhhhhh---hhhh--HHHHH
Confidence 9999999999999999998885 4 47999999999999998 7998 99999
Q ss_pred hcCCEEEEcCCCCC-chhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 164 GHHGIVVITRGDTN-PAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 164 ~~~~~vVv~R~g~~-~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
..++|||++|+|+. ... .... ....+.+++.+ ..+||||.||+++.+|+++.+++|++|.+||.+|+||.
T Consensus 126 ~~~~~vv~~Rp~~~~~~~-----~~~~-~~~~~~~~~~~-~~~ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~LY~ 196 (197)
T COG1057 126 KLVTFVVAPRPGYGELEL-----SLLS-SGGAIILLDLP-RLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGLYR 196 (197)
T ss_pred HhCCEEEEecCCchhhhh-----hhhc-CCceEEEccCc-cccCchHHHHHHHhCCCCchhcCCHHHHHHHHHhcccc
Confidence 99999999999984 211 1111 13457777777 58999999999999999999999999999999999996
No 7
>KOG3199|consensus
Probab=100.00 E-value=2.5e-43 Score=316.70 Aligned_cols=226 Identities=47% Similarity=0.796 Sum_probs=194.4
Q ss_pred ccCceEEEeCCccchhhHHHHHHHHHHHHHhcccC-CEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 4 AAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLG-HTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 4 ~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~-~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
.+.+++++.+||||||+++|++|++.|++++...+ ++||+||+||++++|.|++++|+-||+.|+++|.+.+.|+.+|.
T Consensus 5 ~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~ 84 (234)
T KOG3199|consen 5 EKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLMVDG 84 (234)
T ss_pred ccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhccccceecch
Confidence 35678999999999999999999999999995444 49999999999999999999999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCC-CCcchHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNL-WSADDINH 161 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~-W~~~~~e~ 161 (344)
||..|+.++.|+..|+|+++..... .+.-+-.+...+...+.+|||.|.+++|..|+. |...++..
T Consensus 85 weslQ~~wt~T~~vlrHhqe~~~~k-------------r~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~ 151 (234)
T KOG3199|consen 85 WESLQKEWTRTVKVLRHHQEELNRK-------------RGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRT 151 (234)
T ss_pred hhhccHHHhhhhHHHHHHHHHHHHH-------------hccccccccccCCceEEEEeCchHHHhccCCCCCcchhhHHH
Confidence 9999999999999999999866311 011123345566789999999999999999976 88778899
Q ss_pred HhhcCCEEEEcCCCCCchhhhhhhh-hhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 162 IAGHHGIVVITRGDTNPAKFIYQHD-ILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 162 il~~~~~vVv~R~g~~~~~~~~~~~-~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
|+..++++|++|.|.++.+++...+ .+......+.+.+.-..++||||.||+++.+|++++|++|+.|++||++|+||.
T Consensus 152 i~~~yGl~cv~r~gsD~~~~i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~PD~Vi~yI~~h~LY~ 231 (234)
T KOG3199|consen 152 ILGEYGLVCVTREGSDVENFLSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLTPDSVIEYIREHNLYS 231 (234)
T ss_pred HHhhCcEEEEeccCCCHHHHHhccHHHHHhhcceEEEeeeeecCCcchHHHHHHHHcCCeeEeeCcHHHHHHHHHhhchh
Confidence 9999999999999999998887655 444444445555544369999999999999999999999999999999999998
Q ss_pred CC
Q psy9416 241 VV 242 (344)
Q Consensus 241 ~~ 242 (344)
.+
T Consensus 232 ~~ 233 (234)
T KOG3199|consen 232 SE 233 (234)
T ss_pred cc
Confidence 65
No 8
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=4e-43 Score=317.31 Aligned_cols=191 Identities=28% Similarity=0.385 Sum_probs=166.4
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC-CCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK-DLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~-~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
++||||||||||.||+.|++.|++.++.+ +|+ ++|+..++.|+ ..+++++|++||++++++.+++.|+++|+.+
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d--~v~---~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLD--RVL---LLPSANPPHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCC--EEE---EEeCCCCCCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 35699999999999999999999999777 885 77888877764 6789999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCC
Q psy9416 88 SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHG 167 (344)
Q Consensus 88 ~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~ 167 (344)
++++||++||+++++.+ | +.+++||||+|++.+|. +|++ +++|++.++
T Consensus 76 ~~~~~t~~tl~~l~~~~-------p--------------------~~~~~~liG~D~l~~~~---~W~~--~~~i~~~~~ 123 (192)
T cd02165 76 DGPSYTIDTLEELRERY-------P--------------------NAELYFIIGSDNLIRLP---KWYD--WEELLSLVH 123 (192)
T ss_pred CCCCCHHHHHHHHHHhc-------c--------------------CCCEEEEEcHHHhhhcc---cccC--HHHHHHhCc
Confidence 99999999999999998 4 48999999999999997 8998 899999999
Q ss_pred EEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCC
Q psy9416 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239 (344)
Q Consensus 168 ~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY 239 (344)
++|++|+|.+........ ......++.+++.+ ..+||||+||++++.|+++.++||+.|.+||++|+||
T Consensus 124 ~iv~~R~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~~iSST~IR~~~~~g~~~~~lvp~~V~~yI~~~~lY 192 (192)
T cd02165 124 LVVAPRPGYPIEDASLEK--LLLPGGRIILLDNP-LLNISSTEIRERLKNGKSIRYLLPPAVADYIKEHGLY 192 (192)
T ss_pred EEEEeCCCCCcccchhhh--hccCCCcEEEecCC-ccccCHHHHHHHHHcCCChhHhCCHHHHHHHHHccCC
Confidence 999999997654221110 11123467777666 5899999999999999999999999999999999999
No 9
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=8.7e-42 Score=305.33 Aligned_cols=165 Identities=22% Similarity=0.292 Sum_probs=145.5
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC--CCeEEeccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS--TWIKLSEWEAQ 86 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~--~~i~V~d~E~~ 86 (344)
++||||||||||+||+.+++.+ ..++ +|+ ++|+..++.++..+++++|++|+++|+++. +++.|+++|..
T Consensus 4 i~ifGGSFDP~H~GHl~ia~~~---~~~d--~v~---~vP~~~~~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~ 75 (174)
T PRK08887 4 IAVFGSAFNPPSLGHKSVIESL---SHFD--LVL---LVPSIAHAWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQE 75 (174)
T ss_pred EEEeCCCCCCCCHHHHHHHHHh---hcCC--EEE---EEECCCCcccCCCCCHHHHHHHHHHHHhccCCCceEEehHHhh
Confidence 5669999999999999999884 2555 885 888875444447789999999999999996 79999999998
Q ss_pred c---CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHh
Q psy9416 87 Q---SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIA 163 (344)
Q Consensus 87 ~---~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il 163 (344)
+ ++++||++||++++++| | +.+++||||+|++.+|. .|++ +++|+
T Consensus 76 ~~~~~~~~yT~~tl~~l~~~~-------p--------------------~~~~~~iiG~D~l~~l~---~W~~--~~~i~ 123 (174)
T PRK08887 76 LYAPDESVTTYALLTRLQELY-------P--------------------EADLTFVIGPDNFLKFA---KFYK--ADEIT 123 (174)
T ss_pred hccCCCCcchHHHHHHHHHHC-------C--------------------CCeEEEEEccchHHHHH---HhCC--HHHHH
Confidence 8 78899999999999998 4 47999999999999998 7998 89999
Q ss_pred hcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCCCC
Q psy9416 164 GHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVV 242 (344)
Q Consensus 164 ~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~~~ 242 (344)
+.+.+++++| ..+||||+||++++.|+++.++||+.|.+||.+|+||..+
T Consensus 124 ~~~~l~~~~~-----------------------------~~~ISST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 173 (174)
T PRK08887 124 QRWTVMACPE-----------------------------KVPIRSTDIRNALQNGKDISHLTTPGVARLLKEHQLYTEP 173 (174)
T ss_pred hhCeEEEeCC-----------------------------CCCcCHHHHHHHHHcCCChhHhCCHHHHHHHHHccccCCC
Confidence 9999888643 2468999999999999999999999999999999999765
No 10
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=1.3e-41 Score=333.09 Aligned_cols=184 Identities=25% Similarity=0.337 Sum_probs=162.5
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC-CCCC-HHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK-DLVS-SKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~-~~~s-~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
++||||||||||+||+.|++.|++.++.+ +|+ |+|+..+|+|+ ..++ .++|++||++|+++.|++.|+++|+.
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d--~v~---~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKAIKKLKLD--KLF---FVPTYINPFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHHHHhCCC--EEE---EEeCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 55699999999999999999999999988 896 89999999885 3344 49999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
+++++||++||+++++.| | +.+++||||+|++.+|. +|++ +++|++.+
T Consensus 78 ~~~~syt~~tl~~l~~~~-------p--------------------~~~~~~iiG~D~~~~l~---~W~~--~~~l~~~~ 125 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKY-------P--------------------NDEIYFIIGSDNLEKFK---KWKN--IEEILKKV 125 (342)
T ss_pred CCCCCcHHHHHHHHHHhC-------C--------------------CCcEEEEecHHHhhhcc---cccC--HHHHHHhC
Confidence 999999999999999998 4 48999999999999998 7998 89999999
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCCCCC
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVVE 243 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~~~~ 243 (344)
+|+|++|+|.+.+.. +.+ .++++++.+ ..+||||+||+++++|+ ||+.|++||.+|+||..+.
T Consensus 126 ~~iv~~R~g~~~~~~------~~~--~~i~~~~~~-~~~iSST~IR~~~~~~~-----vP~~V~~YI~~~~LY~e~~ 188 (342)
T PRK07152 126 QIVVFKRKKNINKKN------LKK--YNVLLLKNK-NLNISSTKIRKGNLLGK-----LDPKVNDYINENFLYLEDI 188 (342)
T ss_pred CEEEEECCCCCcccc------ccc--CcEEEecCC-ccccCHHHHHHHHHcCC-----CCHHHHHHHHHcCccccHH
Confidence 999999999764321 111 367888777 58999999999999875 9999999999999997654
No 11
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.97 E-value=9.6e-32 Score=236.06 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=122.5
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccccCC
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQSE 89 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~~ 89 (344)
++|||||||||.||+.|++.|++.+ + +|+ +.|+ .+|+|+..++.++|++||++|+++.|+++|+++|
T Consensus 2 ~l~gGsFdP~H~GHl~l~~~a~~~~--d--~v~---~~~~-~~p~k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e----- 68 (155)
T TIGR01510 2 ALYPGSFDPVTNGHLDIIKRAAALF--D--EVI---VAVA-KNPSKKPLFSLEERVELIKDATKHLPNVRVDVFD----- 68 (155)
T ss_pred EEEEeecCCCcHHHHHHHHHHHHhC--C--EEE---EEEc-CCCCCCCCcCHHHHHHHHHHHHhhCCCeEEcCcc-----
Confidence 5699999999999999999999987 4 775 6676 4577777899999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCEE
Q psy9416 90 WTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIV 169 (344)
Q Consensus 90 ~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~v 169 (344)
+||++|+++++. . +|++|.|+ |++ ++++++.+.
T Consensus 69 -~yt~dt~~~l~~--------------------------------~-~~i~G~~~---------~~~--~~~~~~~~~-- 101 (155)
T TIGR01510 69 -GLLVDYAKELGA--------------------------------T-FIVRGLRA---------ATD--FEYELQMAL-- 101 (155)
T ss_pred -chHHHHHHHcCC--------------------------------C-EEEecCcc---------hhh--HHHHHHHHh--
Confidence 699999997651 2 57888884 665 566766655
Q ss_pred EEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 170 VITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 170 Vv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
+.|.- .. ....++++..+...+||||.||++++.|++++++||++|++||+++
T Consensus 102 -~~r~~---~~----------~~~~i~~~~~~~~~~iSST~IR~~i~~g~~~~~lvP~~V~~YI~~~ 154 (155)
T TIGR01510 102 -MNKHL---AP----------EIETVFLMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLKAK 154 (155)
T ss_pred -hCccc---cc----------CCcEEEEeCCcchhhccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 35521 00 0124556565544589999999999999999999999999999985
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.97 E-value=4.4e-31 Score=231.48 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=122.1
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccccCC
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQSE 89 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~~ 89 (344)
++|||||||+|.||+.+++.|.+.+ + +|+ +.|+.++ +|+...+.++|++|+++|+++.|++.|+++|
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~--d--~v~---v~~~~~~-~k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e----- 68 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLF--D--EVI---VAVAVNP-SKKPLFSLEERVELIREATKHLPNVEVDGFD----- 68 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHC--C--EEE---EEEcCCC-CCCCCCCHHHHHHHHHHHHcCCCCEEecCCc-----
Confidence 5699999999999999999999987 4 775 6676544 5667789999999999999999999999986
Q ss_pred cccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCEE
Q psy9416 90 WTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIV 169 (344)
Q Consensus 90 ~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~v 169 (344)
+||++|+++++. + +|++|.|+ |.+ ++.++ .++
T Consensus 69 -s~t~~~l~~l~~--------------------------------~-~~i~G~d~---------~~~--~e~~~---~~~ 100 (153)
T cd02163 69 -GLLVDFARKHGA--------------------------------N-VIVRGLRA---------VSD--FEYEF---QMA 100 (153)
T ss_pred -chHHHHHHHcCC--------------------------------C-EEEECCcc---------hhh--HHHHH---HHH
Confidence 899999987642 2 58999996 444 45554 455
Q ss_pred EEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHH
Q psy9416 170 VITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQ 235 (344)
Q Consensus 170 Vv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~ 235 (344)
++.|++... ...++++..+...+||||.||++++.|+++.+|||+.|.+||++
T Consensus 101 ~~~r~~~~~-------------~~~i~~~~~~~~~~iSST~IR~~~~~g~~i~~lvP~~V~~yI~~ 153 (153)
T cd02163 101 GMNRKLAPE-------------IETVFLMASPEYSFISSSLVKEIARFGGDVSGFVPPVVAKALKE 153 (153)
T ss_pred HhCCCCCCC-------------CcEEEEeCCCccceecHHHHHHHHHcCCChhHhCCHHHHHHHhC
Confidence 588887421 02456666654457999999999999999999999999999974
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.96 E-value=1e-29 Score=224.12 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=122.2
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
+++|||||||+|.||+.+++.|.+.++ +|+ +.|+.+ ++|++.++.++|++|+++|+++.+++.|+++|
T Consensus 3 igi~gGsFdP~H~GHl~~~~~a~~~~d----~v~---v~~~~~-~~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e---- 70 (159)
T PRK00168 3 IAIYPGSFDPITNGHLDIIERASRLFD----EVI---VAVAIN-PSKKPLFSLEERVELIREATAHLPNVEVVSFD---- 70 (159)
T ss_pred EEEEeeecCCCCHHHHHHHHHHHHHCC----EEE---EEECCC-CCCCCCCCHHHHHHHHHHHHcCCCCEEEecCC----
Confidence 455999999999999999999999874 775 456544 46777899999999999999999999999987
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
+||++|+++++ .. +|+.|.| .|.+ ++.+++.+.
T Consensus 71 --~~t~~~~~~~~--------------------------------~~-~~~~gl~---------~w~d--~e~~~~~~~- 103 (159)
T PRK00168 71 --GLLVDFAREVG--------------------------------AT-VIVRGLR---------AVSD--FEYEFQMAG- 103 (159)
T ss_pred --ccHHHHHHHcC--------------------------------CC-EEEecCc---------chhh--HHHHHHHHH-
Confidence 78999987543 12 5788888 4665 566655544
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
+.|++.+. ...++++..+...+||||.||++++.|+++++|||+.|.+||.++
T Consensus 104 --~~r~~~~~-------------~~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~ 156 (159)
T PRK00168 104 --MNRKLAPE-------------IETVFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKEK 156 (159)
T ss_pred --hCCCCCCC-------------CcEEEEeCCCCcceecHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 77876421 134555555534689999999999999999999999999999986
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.95 E-value=3.2e-28 Score=207.90 Aligned_cols=155 Identities=31% Similarity=0.505 Sum_probs=119.9
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
+|||||||||.||+.|++.|++.++.+ .|+ ++|+..++.| +..++.++|++||++++.+.+++.|++||..+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~--~vi---~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~ 75 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDED--LVI---VVPSDNSPHKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD 75 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSES--EEE---EEEEEHHCHSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccc--ccc---cccccccccccccccCcHHHHHHHHHHHHhhcCCccccchhHHhH
Confidence 589999999999999999999999876 564 6777776665 457999999999999999999999999999886
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
++.+ | +.+++|++|.|++.++. .|++ +++++..+++
T Consensus 76 ------------~~~~-------~--------------------~~~~~~v~g~D~~~~~~---~~~~--~~~~~~~~~~ 111 (157)
T PF01467_consen 76 ------------KKKY-------P--------------------DVKIYFVIGADNLRNFP---KWRD--WQEILKEVNI 111 (157)
T ss_dssp ------------HHHS-------T--------------------SSCEEEEEECTHHEEEE---ESTT--HHHHHHHHHE
T ss_pred ------------hhhc-------c--------------------ccccceeccCCceeeec---CCCc--HHHHHHhCCE
Confidence 3344 3 48999999999999997 7987 8999999999
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHH
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRA 214 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~ 214 (344)
+|+.|++............+......+.++......+||||+||++
T Consensus 112 ~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 112 IVVSRGGDDPIETISDDEILEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp EEEEHHHTTTHEEEEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred EEEEcCCCCccchhhhccccccccceeEEEecCCCCccCHHHHhcC
Confidence 9999997654322222233444445555555544678999999985
No 15
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.83 E-value=9.1e-20 Score=164.33 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=98.7
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHHhhcC----CCeEEeccc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLALEDS----TWIKLSEWE 84 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lAi~d~----~~i~V~d~E 84 (344)
++|||||||+|+||+.+++.|.+.++ +|+ +++++.+ ++.+++.+++++|++|+++++.+. ..+.+-.++
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~----~vi--i~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~ 75 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAK----KVI--ILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLR 75 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC----eEE--EEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecC
Confidence 46999999999999999999999887 564 2344543 345667899999999999998774 245565555
Q ss_pred cccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHh
Q psy9416 85 AQQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIA 163 (344)
Q Consensus 85 ~~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il 163 (344)
... |.-+.+ .++++..... -..+.++ .++|.|.-.+- .|. +++
T Consensus 76 D~~----~~~~~W~~~v~~~v~~~----------------------~~~~~~i-~~~g~~kd~~~----~~~-----~lf 119 (181)
T cd02168 76 DHL----YSDNLWLAEVQQQVLEI----------------------AGGSASV-GLVGHRKDASS----YYL-----RSF 119 (181)
T ss_pred CCC----CChHHHHHHHHHhChHh----------------------hCCCCcE-EEeCCccCCCc----cce-----eec
Confidence 432 111122 2222221000 0002343 44476652211 111 111
Q ss_pred hcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHc--CCCccCCCcHHHHHHHHHc
Q psy9416 164 GHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRR--GDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 164 ~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~--g~~i~~lVP~~V~~YI~~~ 236 (344)
..+.+++.+...+||||.||+++.. |.+++++||++|.+||.+.
T Consensus 120 -----------------------------pe~~~~~~p~~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~ 165 (181)
T cd02168 120 -----------------------------PQWDYLEVPNYPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAF 165 (181)
T ss_pred -----------------------------CCcCeecCccccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHh
Confidence 1222333443347999999999999 6799999999999999986
No 16
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.83 E-value=1.2e-19 Score=161.17 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=98.4
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
++|||+|||+|+||+.+++.|.+.++ +|+ +++|+.+.++| ++.+++++|++|++.++++.+...+......
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~D----~li--i~i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~-- 73 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEVD----ELI--IGIGSAQESHTLENPFTAGERILMITQSLKEVGDLTYYIIPIE-- 73 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHCC----EEE--EEEcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecC--
Confidence 35899999999999999999999875 675 34577776655 5678899999999999988763333332221
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
.. ...+.+.+.-..+. | ..+. +.+|.+ .| +++++..+
T Consensus 74 d~-~~~~~w~~~v~~~~------p--------------------~~D~-vf~~~~---------~~-----~~~f~e~g- 110 (165)
T TIGR01527 74 DI-ERNSIWVSYVESMT------P--------------------PFDV-VYSNNP---------LV-----RRLFKEAG- 110 (165)
T ss_pred Cc-cHHHHHHHHHHHhC------C--------------------CCCE-EEECCH---------HH-----HHHHHHcC-
Confidence 11 11122222211221 2 1342 333311 12 33443333
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcC
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHG 237 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~ 237 (344)
-.+..+.......+|||+||+.+..|++|+.|||++|++||.+-+
T Consensus 111 ------------------------~~v~~~p~~~r~~~S~T~IR~~i~~~~~W~~lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 111 ------------------------YEVKRPPMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEIK 155 (165)
T ss_pred ------------------------CEEEECCCcCCCcccHHHHHHHHHcCCChhhhCCHHHHHHHHHcC
Confidence 222222221245899999999999999999999999999999864
No 17
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.82 E-value=1.6e-19 Score=160.07 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=96.3
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCC----CeEEeccc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDST----WIKLSEWE 84 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~----~i~V~d~E 84 (344)
++|||||||+|+||+.+++.|++.++ +|+ +++|+++++++ +...++++|++|+++++++.. .+.+.+++
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~d----~l~--v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~ 75 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEVD----ELI--IGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVP 75 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC----EEE--EEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecC
Confidence 46999999999999999999999874 775 34677776655 456899999999999998742 34443332
Q ss_pred cccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhh
Q psy9416 85 AQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAG 164 (344)
Q Consensus 85 ~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~ 164 (344)
.. +..+ .|.. ..+..+.
T Consensus 76 d~-----~~~~---------------------------------------------------------~w~~-~v~~~vp 92 (163)
T cd02166 76 DI-----ERNS---------------------------------------------------------LWVS-YVESLTP 92 (163)
T ss_pred CC-----CchH---------------------------------------------------------HHHH-HHHHHCC
Confidence 11 1111 1221 0112222
Q ss_pred cCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccc--cccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCC
Q psy9416 165 HHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWI--KNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239 (344)
Q Consensus 165 ~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~--~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY 239 (344)
.++++++.++ .. ...+.+++ +.++..|. ...||||.||+.+.+|++++.+||++|.+||.+.++-
T Consensus 93 ~~div~~g~~---~~-----~~~f~~~g--~~v~~~p~~~~~~~s~t~iR~~~~~~~~~~~~vp~~v~~~l~~~~~~ 159 (163)
T cd02166 93 PFDVVYSGNP---LV-----ARLFKEAG--YEVRRPPMFNREEYSGTEIRRLMLGGEDWEELVPKSVAEVIKEIGGV 159 (163)
T ss_pred CCCEEEECch---HH-----HHhhhhcC--CeEecCCcccCCCCCHHHHHHHHHcCCchhhcCCHHHHHHHHHcCCh
Confidence 3344443321 00 01111222 22223332 3469999999999999999999999999999987653
No 18
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.80 E-value=1e-18 Score=152.05 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=114.2
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
|++++ |+|||||+|+||+.++++|...++ +|+ +....+|.|+++.+.++|++|++.++++.|+++|..++.
T Consensus 2 ~~iav-ypGSFDPiTnGHlDii~RA~~~Fd----~vi----VaV~~np~K~plFsleER~~l~~~~~~~l~nV~V~~f~~ 72 (159)
T COG0669 2 MKIAV-YPGSFDPITNGHLDIIKRASALFD----EVI----VAVAINPSKKPLFSLEERVELIREATKHLPNVEVVGFSG 72 (159)
T ss_pred CeeEE-eCCCCCCCccchHHHHHHHHHhcc----EEE----EEEEeCCCcCCCcCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 45554 999999999999999999999887 563 234556789999999999999999999999999987753
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
- |-.+-++.+ +. .++-|--...+|. +|--+..
T Consensus 73 L----------lvd~ak~~~----------------------------a~-~ivRGLR~~sDfe---------YE~qma~ 104 (159)
T COG0669 73 L----------LVDYAKKLG----------------------------AT-VLVRGLRAVSDFE---------YELQMAH 104 (159)
T ss_pred H----------HHHHHHHcC----------------------------CC-EEEEeccccchHH---------HHHHHHH
Confidence 2 223333332 33 6777777776664 2321111
Q ss_pred CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 166 HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
. ...|..--+.+++...+....||||.+|+-..-|.+++.+||+.|.+-++++
T Consensus 105 ~------------------N~~L~~eveTvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l~~k 157 (159)
T COG0669 105 M------------------NRKLAPEVETVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARALRAK 157 (159)
T ss_pred H------------------HHhhcccccEEEecCCcceehhhHHHHHHHHHhCCCchhhCCHHHHHHHHHh
Confidence 1 1112211245666666667899999999999999999999999999998874
No 19
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.78 E-value=1.8e-18 Score=154.95 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=48.6
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCC
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDST 76 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~ 76 (344)
++|||||||+|+||+.+++.|++.++ +|+ +++++.+++++ ++.+++++|++|++.++++.+
T Consensus 3 gl~~G~F~P~H~GHl~~i~~a~~~~d----~v~--v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~ 64 (174)
T PRK01153 3 ALFIGRFQPFHKGHLEVIKWILEEVD----ELI--IGIGSAQESHTLKNPFTAGERILMIRKALEEEG 64 (174)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhCC----EEE--EEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 56999999999999999999999655 775 34555555544 567899999999999997543
No 20
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.78 E-value=1e-18 Score=148.08 Aligned_cols=139 Identities=21% Similarity=0.149 Sum_probs=96.0
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
++++|+|||+|+||+.|++.|++.+ .+ +++ ++|..+++.+ +...+.++|++|++.+.++ ...+..++..
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~-~~--~~~---v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~--~~~v~~~~~~ 73 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEA-LD--EVI---IIIVSNPPKKKRNKDPFSLHERVEMLKEILKD--RLKVVPVDFP 73 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHc-CC--ceE---EEEcCCChhhcccccCCCHHHHHHHHHHhccC--CcEEEEEecC
Confidence 4589999999999999999999987 23 554 5566665543 3678999999999999873 3455666666
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
...++++.+.+..+...+ ...++++|.|....+. .|++...+++...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~~v~G~d~~~~~~---~~~~~~~~~~~~~~ 121 (143)
T cd02039 74 EVKILLAVVFILKILLKV-----------------------------GPDKVVVGEDFAFGKN---ASYNKDLKELFLDI 121 (143)
T ss_pred hhhccCHHHHHHHHHHHc-----------------------------CCcEEEECCccccCCc---hhhhHHHHHhCCce
Confidence 555677765555444444 1238999999999997 68742234443344
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHH
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRA 214 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~ 214 (344)
.++++.|.+ ....||||.||++
T Consensus 122 ~vv~~~~~~--------------------------~~~~iSSt~IR~~ 143 (143)
T cd02039 122 EIVEVPRVR--------------------------DGKKISSTLIREL 143 (143)
T ss_pred EEEeeEecC--------------------------CCcEEehHHhhcC
Confidence 444444431 1257899999973
No 21
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.75 E-value=1.3e-17 Score=163.85 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCc--ccCCCCCCCCCHHHHHHHHHHHhhcCC--
Q psy9416 1 MSSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPV--HDKYGKKDLVSSKHRCEMVRLALEDST-- 76 (344)
Q Consensus 1 ~~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~--~~~~~K~~~~s~~~Rl~Ml~lAi~d~~-- 76 (344)
||..+++ ++||||+|||+|+||+.+++.|++.++ +|+ +.|+ ..++.+++.+++++|++|++.++++.+
T Consensus 1 ~~~~~~~-~~~~~G~F~P~H~GHl~~i~~a~~~~d----~l~---v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~ 72 (340)
T PRK05379 1 PMNRRYD-YLVFIGRFQPFHNGHLAVIREALSRAK----KVI---VLIGSADLARSIKNPFSFEERAQMIRAALAGIDLA 72 (340)
T ss_pred CCCccce-EEEEeeccCCCCHHHHHHHHHHHHHCC----EEE---EEEccCCCCCcCCCCCCHHHHHHHHHHHhhcCCCc
Confidence 4555555 455999999999999999999999884 675 4453 445566778999999999999998654
Q ss_pred CeEEeccccccCCcccHHHHHH-HHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCC
Q psy9416 77 WIKLSEWEAQQSEWTRTRVSLD-HHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWS 155 (344)
Q Consensus 77 ~i~V~d~E~~~~~~syT~dtL~-~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~ 155 (344)
.+.+-.++... |+-+.+. +.++..... . .| +.++ .++|.|.-.+- +
T Consensus 73 r~~~~pi~d~~----~~~~~W~~~v~~~v~~~-~-~~--------------------~~~~-~~~g~~~~~~~-----~- 119 (340)
T PRK05379 73 RVTIRPLRDSL----YNDSLWLAEVQAAVAEH-A-GA--------------------DARI-GLIGHEKDASS-----Y- 119 (340)
T ss_pred eEEEEECCCCC----cChHHHHHHHHHHHHhc-c-CC--------------------CCcE-EEECCcCCCCh-----H-
Confidence 45555555432 1111121 222111000 0 02 2454 45576652211 1
Q ss_pred cchHHHHhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccC---CCcHHHHHH
Q psy9416 156 ADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKY---LINDKVEQY 232 (344)
Q Consensus 156 ~~~~e~il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~---lVP~~V~~Y 232 (344)
+.+++...+++ ..+...++|||.||+++..|.++.. +||++|.+|
T Consensus 120 ---~~~~f~~~~~~-----------------------------~~~~~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~ 167 (340)
T PRK05379 120 ---YLRSFPQWELV-----------------------------DVPNTEDLSATEIRDAYFEGRISSFYGWAVPAPVYAF 167 (340)
T ss_pred ---HHHhccccccc-----------------------------cCCcccccCccHHHHHHHcCCCchhhhhcCCHHHHHH
Confidence 12232221111 1222578999999999999988665 999999999
Q ss_pred HHHcC
Q psy9416 233 IYQHG 237 (344)
Q Consensus 233 I~~~~ 237 (344)
|.+-+
T Consensus 168 l~~~~ 172 (340)
T PRK05379 168 LEAFR 172 (340)
T ss_pred HHHhc
Confidence 98753
No 22
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.74 E-value=3.9e-17 Score=141.51 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=94.9
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
+++|||||||+|+||+.++++|.+.++ +|+ +.|+.+ +.|+...+.++|++|+++++++.++++|..++..
T Consensus 3 iai~~GSFDPih~GHl~ii~~A~~~~D----~v~---v~v~~n-p~K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~-- 72 (140)
T PRK13964 3 IAIYPGSFDPFHKGHLNILKKALKLFD----KVY---VVVSIN-PDKSNASDLDSRFKNVKNKLKDFKNVEVLINENK-- 72 (140)
T ss_pred EEEEeeeeCCCCHHHHHHHHHHHHhCC----EEE---EEeccC-CCCCCCCCHHHHHHHHHHHHcCCCCcEEecCcCC--
Confidence 345999999999999999999999864 774 566654 5677789999999999999999999988755322
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
.++ .+. ++.+ +. +++-|-....+|. +|.-+...
T Consensus 73 ---l~v---~~~-~~~~----------------------------a~-~ivrGlR~~~Dfe---------yE~~~a~~-- 105 (140)
T PRK13964 73 ---LTA---EIA-KKLG----------------------------AN-FLIRSARNNIDFQ---------YEIVLAAG-- 105 (140)
T ss_pred ---cHH---HHH-HHCC----------------------------Ce-EEEEecCCCccHH---------HHHHHHHH--
Confidence 222 222 2331 34 7888888877664 23221111
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcC
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRG 218 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g 218 (344)
...|..--..|+++..+....||||.||+...-|
T Consensus 106 ----------------n~~l~~~ietvfl~~~~~~~~iSSs~vre~~~~~ 139 (140)
T PRK13964 106 ----------------NKSLNNDLETILIIPDYDKIEYSSTLLRHKKFLK 139 (140)
T ss_pred ----------------HHhhcCCCeEEEeecCCCCCEEeHHHHHHHHHcc
Confidence 1112211246677766667899999999987655
No 23
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.70 E-value=1.1e-16 Score=141.30 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=60.5
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
+||||||||+|+||+.+++.|++.++ +|+ ++|++.++.| +..++.++|++|+++++++.+++.|+.+|...
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~d----~v~---vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d 74 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQVD----ELL---IIVGSDDTRDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEPD 74 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHCC----EEE---EEECCCCcccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 56999999999999999999999874 774 6666666543 56789999999999999999999999998843
No 24
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.69 E-value=4.1e-17 Score=159.33 Aligned_cols=191 Identities=13% Similarity=0.054 Sum_probs=120.6
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC--CCCCCCHHHHHHHHHHHhhcCCC-eEEecccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG--KKDLVSSKHRCEMVRLALEDSTW-IKLSEWEA 85 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~--K~~~~s~~~Rl~Ml~lAi~d~~~-i~V~d~E~ 85 (344)
++||||||||+|.||+.+++.|++.++ +|+ ++|+..++. ++..++.++|++|+++++++.+. ++|++++-
T Consensus 3 i~i~~GsFdP~H~GHl~ii~~a~~~~d----~v~---v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~~ 75 (325)
T TIGR01526 3 IGVVFGKFYPLHTGHIYLIYEAFSKVD----ELH---IVVGSLFYDSKAKRPPPVQDRLRWLREIFKYQKNQIFIHHLNE 75 (325)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHCC----EEE---EEECCCCcCccCCCCCCHHHHHHHHHHHhccCCCeEEEEEcCC
Confidence 456999999999999999999999864 775 667665444 34678999999999999999999 99998873
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
..- +.|. +-++...+..... ... . . -....++.|... +.. ..
T Consensus 76 ~~~-~~~~-~~w~~~~~~~~~~---~~~-----~-----------g-~~~~~vf~~E~~---------y~~----~~--- 117 (325)
T TIGR01526 76 DGI-PEYP-NGWDSWSNALKTL---FHE-----K-----------H-FEPDIVFSSEPQ---------YAA----PY--- 117 (325)
T ss_pred CCC-CCCc-chHHHHHHHHHHH---hcc-----c-----------C-CcccEEEeCCcc---------cHH----HH---
Confidence 211 2221 2222222222100 000 0 0 001112222110 100 00
Q ss_pred CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-cccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc-CCCCCCC
Q psy9416 166 HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-WIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH-GLYSVVE 243 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~-~LY~~~~ 243 (344)
.+.+...+..+.. .....||||.+|+..... |..|+..|..|+.+. .|.+.+.
T Consensus 118 ----------------------~~~~~~ev~~V~~~~~v~~ISat~ir~~p~~~---w~~i~~~~~~~~~~~~~~~G~~~ 172 (325)
T TIGR01526 118 ----------------------EKYLGLEVVLVDPDRTFFSVSATQIRENPFQH---WKHIPREVRPFFVKTVAILGGES 172 (325)
T ss_pred ----------------------HHhhCCeeEeeccccccCCCCHHHHHHCHHHH---HHhCCHHHHhhcCcEEEEECCCC
Confidence 0011122222222 125789999999765433 667899999988765 5668999
Q ss_pred CCCcccchhhhhhhhhhccCCCCCCCCCcccC
Q psy9416 244 SPHLEVSPILDLLSNLNNNFLPNGSPETHVNA 275 (344)
Q Consensus 244 ~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 275 (344)
+|||+ |...|+..|++..++|..-.+
T Consensus 173 ~gkst------l~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 173 TGKST------LVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred CCHHH------HHHHHHHhhCCCEEeehhHHH
Confidence 99999 999999999999988874433
No 25
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.69 E-value=1.4e-16 Score=159.58 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=121.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC---------CCCCCCHHHHHHHHHHHhhcCC
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG---------KKDLVSSKHRCEMVRLALEDST 76 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~---------K~~~~s~~~Rl~Ml~lAi~d~~ 76 (344)
|+.++|++|+|||+|+||+.+++.|.+.++.. .|+ + +..+++ ++...+.++|++|++.++.+.+
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d~l--~v~---v--~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~ 123 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDEL--HII---I--CYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQK 123 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHCCee--EEE---E--EccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCC
Confidence 44456699999999999999999999987743 332 2 222221 2457899999999999999999
Q ss_pred CeEEecccc-ccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCC
Q psy9416 77 WIKLSEWEA-QQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLW 154 (344)
Q Consensus 77 ~i~V~d~E~-~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W 154 (344)
++.|..++. ..+...|..+-+ ..++...... . ...++ +++|.+.-
T Consensus 124 ~v~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~----~-------------------~~~~~-vf~~~~~d--------- 170 (399)
T PRK08099 124 NIKIHAFNEEGMEPYPHGWDVWSNGIKAFMAEK----G-------------------IQPDV-IYTSEEQD--------- 170 (399)
T ss_pred CEEEEecCCCCCCCCCccHHHHHHHHHHHHHhc----C-------------------CCCCE-EEEeCCCC---------
Confidence 999986655 333222222221 2222222100 0 01333 23333321
Q ss_pred CcchHHHHhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEecc-ccccccHHHHHHHHHcCCCccCCCcHHHHHHH
Q psy9416 155 SADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEW-IKNEISSTYLRRALRRGDSIKYLINDKVEQYI 233 (344)
Q Consensus 155 ~~~~~e~il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~-~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI 233 (344)
...+ ++...-....++.. ...+||+|+||+..... |.++|+.|..|.
T Consensus 171 ----~~~~-------------------------~~~~~~~~~~vd~~r~~~~iSaT~IR~~p~~~---w~~i~~~vr~~~ 218 (399)
T PRK08099 171 ----APQY-------------------------EEHLGIETVLVDPKRTFMNISGTQIRENPFRY---WEYIPTEVRPFF 218 (399)
T ss_pred ----hHHH-------------------------HHhcCCceeeeccccccCCcCHHHHhhCHHHH---HHhcCHHHhhCC
Confidence 0011 11111122233321 13689999999987654 789999999997
Q ss_pred HHc-CCCCCCCCCCcccchhhhhhhhhhccCCCCCCCCCcccC
Q psy9416 234 YQH-GLYSVVESPHLEVSPILDLLSNLNNNFLPNGSPETHVNA 275 (344)
Q Consensus 234 ~~~-~LY~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 275 (344)
.++ .+.+.+++|||+ |+..|+..|++..++|..-.+
T Consensus 219 ~~~IvI~G~~gsGKTT------L~~~La~~~g~~~v~E~~R~~ 255 (399)
T PRK08099 219 VRTVAILGGESSGKST------LVNKLANIFNTTSAWEYGREY 255 (399)
T ss_pred CcEEEEEcCCCCCHHH------HHHHHHHHhCCCeeeeccHHH
Confidence 777 777999999999 999999999888777654333
No 26
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.59 E-value=4.2e-15 Score=143.59 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=58.3
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
+|++. .-|||||||+||+.+++.|.+.++.+ .|+ ++|+ ++..+++++|++|+++++++.|+++|..++.
T Consensus 114 ~~~~~-~~~~FDPiH~GHl~ii~~a~~~~d~~--~V~---i~~~-----~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 114 KKIAA-IVMNANPFTLGHRYLVEKAAAENDWV--HLF---VVSE-----DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CceEE-EEecCCCCchHHHHHHHHHHhhCCeE--EEE---EEcC-----CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45565 58999999999999999999999876 664 6674 3456899999999999999999999887764
No 27
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.58 E-value=3.2e-14 Score=128.46 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=49.6
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 15 SYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 15 SFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
+|||+|+||+.+++.|++.++.+ .|+ +.|+ +...+++++|++|+++|+++.+++.|..
T Consensus 7 ~~DPiH~GHl~i~~~a~~~~d~~--~V~---v~p~-----~~~~~s~e~R~~Mi~~a~~~~~~v~v~~ 64 (182)
T smart00764 7 NANPFTLGHRYLVEQAAAECDWV--HLF---VVSE-----DASLFSFDERFALVKKGTKDLDNVTVHS 64 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHCCce--EEE---EEeC-----CCCCCCHHHHHHHHHHHhccCCCEEEEe
Confidence 89999999999999999999877 664 6675 3456899999999999999999877653
No 28
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.56 E-value=4.3e-14 Score=128.61 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=50.3
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHHhhcC
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLALEDS 75 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lAi~d~ 75 (344)
|...++|.|.|+|+|+||+++++.|++.++ +|+ +.+.+.+ +...+++.++.+|+.|++.++.+.
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~d----evI--I~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~ 67 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQSR----YVI--LALGSAQMERNIKNPFLAIEREQMILSNFSLD 67 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhCC----EEE--EEEccCCCCCCCCCCCCHHHHHHHHHHhcchh
Confidence 345667999999999999999999999887 554 2333333 444577899999999999998653
No 29
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.50 E-value=1.5e-13 Score=134.61 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=55.8
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWE 84 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E 84 (344)
.++++||||||+|+||+.|+++|.+.++.+ .|+ ++ . .++...+.++|++|++.++++.+++.|....
T Consensus 140 ~i~~~~g~fdP~t~GH~~li~~A~~~~d~~--~v~---v~--~---~~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~ 206 (332)
T TIGR00124 140 KIGSIVMNANPFTNGHRYLIEQAARQCDWL--HLF---VV--K---EDASLFSYDERFALVKQGIQDLSNVTVHNGS 206 (332)
T ss_pred cEEEEEeCcCCCchHHHHHHHHHHHHCCEE--EEE---EE--e---CCCCCCCHHHHHHHHHHHhcCCCCEEEEecC
Confidence 455699999999999999999999999876 553 32 1 2456899999999999999999998887654
No 30
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.47 E-value=6.1e-13 Score=113.79 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=81.4
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC----CCCCCCCCHHHHHHHHHHHhhcCCCeEEe
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK----YGKKDLVSSKHRCEMVRLALEDSTWIKLS 81 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~----~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~ 81 (344)
|++++ ++|+|||+|.||+.+++.|.+..+ .++ +.++.+. ..+....+.++|++|++. ++..+.+.+.
T Consensus 1 ~~~v~-~~G~FD~~H~GH~~ll~~a~~~~~----~l~---v~v~~~~~~~~~~~~~~~~~~eR~~~l~~-~~~vd~v~~~ 71 (136)
T cd02170 1 MKRVY-AAGTFDIIHPGHIRFLEEAKKLGD----YLI---VGVARDETVAKIKRRPILPEEQRAEVVEA-LKYVDEVILG 71 (136)
T ss_pred CeEEE-EcCccCCCCHHHHHHHHHHHHhCC----EEE---EEECCcHHHHhcCCCCCCCHHHHHHHHHc-CCCcCEEEEC
Confidence 35555 899999999999999999999764 343 2222222 223467899999999996 5554444332
Q ss_pred ccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHH
Q psy9416 82 EWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINH 161 (344)
Q Consensus 82 d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~ 161 (344)
. +.+.++.+.+.. | + ++++|.|...... .|.+ ++.
T Consensus 72 -----~-----~~~~~~~l~~~~-------~----------------------~-~vv~G~d~~fg~~---~~~~--~~~ 106 (136)
T cd02170 72 -----H-----PWSYFKPLEELK-------P----------------------D-VIVLGDDQKNGVD---EEEV--YEE 106 (136)
T ss_pred -----C-----CCCHhHHHHHHC-------C----------------------C-EEEECCCCCCCCc---chhH--HHH
Confidence 1 223455554432 2 2 8999999865443 5655 455
Q ss_pred HhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHH
Q psy9416 162 IAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALR 216 (344)
Q Consensus 162 il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~ 216 (344)
+.+....+++.| .....||||.||+++.
T Consensus 107 l~~~g~~~~~~~---------------------------~~~~~vSSt~Ir~~i~ 134 (136)
T cd02170 107 LKKRGKVIEVPR---------------------------KKTEGISSSDIIKRIL 134 (136)
T ss_pred HHHCCeEEEECC---------------------------CCCCCCcHHHHHHHHH
Confidence 444332222222 0135799999999985
No 31
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.46 E-value=1.4e-12 Score=130.10 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=124.1
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC-----eEE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW-----IKL 80 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~-----i~V 80 (344)
.++++ -=||||+|+||++|++.|++.+..+ .|| +.|.-. ++|.+.++++.|++|++.+++.++. +.+
T Consensus 184 ~~Vva--fqt~nPiHr~H~~l~~~a~e~l~~d--~ll---l~P~~g-~~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~ 255 (383)
T TIGR00339 184 DTVVA--FQTRNPMHRAHEELTKRAARSLPNA--GVL---VHPLVG-LTKPGDIPAEVRMRAYEVLKEGYPNPERVMLTF 255 (383)
T ss_pred CeEEE--eccCCCCchHHHHHHHHHHHHcCCC--eEE---EEeCCC-CCCCCCCCHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 34555 4789999999999999999987766 775 788777 6778889999999999999999865 889
Q ss_pred eccccccCCcccHHHHHHH--HHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcC--C-CCCC
Q psy9416 81 SEWEAQQSEWTRTRVSLDH--HEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAV--P-NLWS 155 (344)
Q Consensus 81 ~d~E~~~~~~syT~dtL~~--lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~--p-~~W~ 155 (344)
.++|...+|++ ++|.| +++.|+ .. +||+|.|...--.. . ..|.
T Consensus 256 ~~~em~~agpr---eall~Aiir~nyG----------------------------~t-h~IiG~Dhag~g~~~~~~~~Y~ 303 (383)
T TIGR00339 256 LPLAMRYAGPR---EAIWHAIIRKNYG----------------------------AT-HFIVGRDHAGPGSNSKGQDFYG 303 (383)
T ss_pred cchHhhcCCcH---HHHHHHHHHHHCC----------------------------CC-EEEECCCCCCCCCCCccccCCC
Confidence 99999999997 88988 999883 34 99999998654310 0 0344
Q ss_pred cchHHHHhhcC----CE--EEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c----ccccccHHHHHHHHHcCCCc-cC
Q psy9416 156 ADDINHIAGHH----GI--VVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W----IKNEISSTYLRRALRRGDSI-KY 223 (344)
Q Consensus 156 ~~~~e~il~~~----~~--vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~----~~~~ISST~IR~~l~~g~~i-~~ 223 (344)
..+.+++++.+ ++ +.+.---|.. + ...+...+. + ....||.|+||+.|+.|..+ ..
T Consensus 304 ~~~aq~i~~~~~~~l~I~~v~~~~~~Yc~-----------~-c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~ 371 (383)
T TIGR00339 304 PYDAQELFEKYKAELGIKIVPFEHVAYCP-----------D-EDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEW 371 (383)
T ss_pred cchHHHHHHhCccccCceEEecceeEEEc-----------c-cCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCc
Confidence 44567788654 12 2211111100 0 111222221 1 14579999999999999754 45
Q ss_pred CCcHHHHHHHH
Q psy9416 224 LINDKVEQYIY 234 (344)
Q Consensus 224 lVP~~V~~YI~ 234 (344)
+..++|.+-+.
T Consensus 372 f~rpeV~~~L~ 382 (383)
T TIGR00339 372 FSRPEVVKILR 382 (383)
T ss_pred cCcHHHHHHHh
Confidence 77788877554
No 32
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.41 E-value=1.1e-12 Score=115.27 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=44.6
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc---CCCC-CCCCCHHHHHHHHHHHhhc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD---KYGK-KDLVSSKHRCEMVRLALED 74 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~---~~~K-~~~~s~~~Rl~Ml~lAi~d 74 (344)
+++ |||||||+|.||+.+++.|.+.. + +|+ +.++.+ ++.| ....++++|++|++.++.+
T Consensus 3 ~v~-~gGtFDplH~GH~~ll~~A~~~~--d--~li---vgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 3 KVA-VGGTFDPLHDGHRALLRKAFELG--K--RVT---IGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred EEE-EecccCCCCHHHHHHHHHHHHcC--C--EEE---EEEcCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 454 89999999999999999999863 3 665 222222 2333 4568999999999998876
No 33
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.26 E-value=1.1e-11 Score=92.60 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=45.9
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCc--ccCCCCC-CCCCHHHHHHHHHHHhhcC
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPV--HDKYGKK-DLVSSKHRCEMVRLALEDS 75 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~--~~~~~K~-~~~s~~~Rl~Ml~lAi~d~ 75 (344)
++++|+|||+|.||+.++++|++.++ . .++ +++. ..++.|+ ...+.++|.+|++.++...
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~~~~~-~--~vv---~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAKELFD-E--LIV---GVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHhCC-E--EEE---EECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 45899999999999999999999877 3 443 3333 2333444 6789999999999887654
No 34
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.16 E-value=4e-10 Score=95.51 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC-CCCCCCCCHHHHHHHHHHH
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK-YGKKDLVSSKHRCEMVRLA 71 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~-~~K~~~~s~~~Rl~Ml~lA 71 (344)
||+++ .+|+|||+|.||+.++++|.+..+ +++.++..-...+ +.++...+.++|++|++..
T Consensus 1 ~~~v~-~~G~FDgvH~GH~~ll~~a~~~~~----~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 1 MKVVI-TYGTFDLLHIGHLNLLERAKALGD----KLIVAVSTDEFNAGKGKKAVIPYEQRAEILESI 62 (129)
T ss_pred CcEEE-EeeeeccCCHHHHHHHHHHHHhCC----EEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcC
Confidence 45555 799999999999999999998765 3332222110111 1224568999999999753
No 35
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.13 E-value=6.7e-10 Score=99.78 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=46.3
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccC-----CCC--CCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDK-----YGK--KDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~-----~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
.-|+|||+|+||+.+++.|.+..+..+. .|+ +++...+ +.+ ..+.+.++|++|++.. . .+.+.+.++
T Consensus 4 ~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vv---v~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~-vd~v~~~~f 78 (180)
T cd02064 4 AIGNFDGVHLGHQALIKTLKKIARERGLPSAV---LTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-G-VDYLLVLPF 78 (180)
T ss_pred EEecCCccCHHHHHHHHHHHHHHHHcCCCeEE---EEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-C-CCEEEEeCC
Confidence 5799999999999999999998764333 443 3333222 222 3468999999999963 2 555655554
No 36
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=98.99 E-value=1.2e-09 Score=95.23 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=44.4
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCC---CCCCHHHHHHHHHHHhhcC
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKK---DLVSSKHRCEMVRLALEDS 75 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~---~~~s~~~Rl~Ml~lAi~d~ 75 (344)
+|||||||+|.||+.++..|.+... + +++ +..+... .+.|+ ...+.++|++|++.++++.
T Consensus 3 ~~GGtFD~lH~GH~~Ll~~a~~~~~-d--~v~--vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 3 AVGGTFDRLHDGHKILLSVAFLLAG-E--KLI--IGVTSDELLKNKSLKELIEPYEERIANLHEFLVDL 66 (143)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHhc-C--CcE--EEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999875 3 444 1223222 22332 2469999999999999885
No 37
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=98.99 E-value=8.7e-09 Score=90.41 Aligned_cols=70 Identities=17% Similarity=0.037 Sum_probs=45.4
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
++|+ .+|+|||+|.||+.++++|++....+ +|+-|+.+-... .++.++..+.++|.+|+.. +...+.+.+
T Consensus 3 ~rV~-~~G~FDl~H~GHi~~L~~A~~lg~~d--~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~-~~~Vd~Vi~ 73 (150)
T cd02174 3 VRVY-VDGCFDLFHYGHANALRQAKKLGPND--YLIVGVHSDEEIHKHKGPPVMTEEERYEAVRH-CKWVDEVVE 73 (150)
T ss_pred eEEE-EeCccCCCCHHHHHHHHHHHHhCCCC--EEEEEEecCHHHhhcCCCCcCCHHHHHHHHHh-cCCCCeEEE
Confidence 3455 79999999999999999999876222 454223221100 1222367899999999995 454444433
No 38
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.95 E-value=3.4e-09 Score=94.70 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=47.4
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHHhhcC
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLALEDS 75 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lAi~d~ 75 (344)
.++|-|.|.|+|.||+.+++.|++..+ +|+ +++.+.+ +...+++.++.+|..|++.++++.
T Consensus 5 rgv~~GRFqP~H~GHl~vi~~al~~vD----eli--I~iGSa~~~~t~~nPfTagER~~mi~~~L~~~ 66 (172)
T COG1056 5 RGVYFGRFQPLHTGHLYVIKRALSKVD----ELI--IVIGSAQESHTLKNPFTAGERIPMIRDRLREA 66 (172)
T ss_pred EEEEEeccCCccHhHHHHHHHHHHhCC----EEE--EEEccCcccccccCCCCccchhHHHHHHHHhc
Confidence 455899999999999999999999866 454 2344333 344567789999999999999753
No 39
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.94 E-value=5.6e-09 Score=93.33 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=48.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 15 SYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 15 SFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
.-||+|+||..|+++|.+.++.. .| |+...+ +...|+.+|++|++..+++.+++.|.+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~d~l--~v----FVV~eD----~S~Fpf~~R~~LVk~G~~~L~NV~V~~ 64 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKECDWL--HV----FVVSED----RSLFPFADRYELVKEGTADLPNVTVHP 64 (182)
T ss_pred cCCCCccHHHHHHHHHHHhCCEE--EE----EEEccc----cCcCCHHHHHHHHHHHhCcCCCEEEEc
Confidence 35999999999999999998855 44 344433 567999999999999999999988763
No 40
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=98.90 E-value=2.6e-08 Score=87.59 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=47.6
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHHhhcCCCeEEe
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLALEDSTWIKLS 81 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lAi~d~~~i~V~ 81 (344)
+.+++|+|||+|.||+.++++|++..+ +|+-|+.+.......| .+..+.++|.+|+ .+++..+.+.+.
T Consensus 4 iv~~~G~FD~~H~GHi~~L~~A~~lgd----~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v-~~~~~Vd~V~v~ 74 (152)
T cd02173 4 VVYVDGAFDLFHIGHIEFLEKARELGD----YLIVGVHDDQTVNEYKGSNYPIMNLHERVLSV-LACRYVDEVVIG 74 (152)
T ss_pred EEEEcCcccCCCHHHHHHHHHHHHcCC----EEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHH-HhcCCCCEEEEC
Confidence 444899999999999999999998643 5542333221112223 3678999999999 678877766553
No 41
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.74 E-value=1.2e-08 Score=83.57 Aligned_cols=54 Identities=13% Similarity=-0.058 Sum_probs=42.2
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHH
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lA 71 (344)
+|||+|||+|.||+.+++.|.+.++ +|+ +.++.+++.+ ....+.++|++|++..
T Consensus 3 ~~~G~Fdp~H~GH~~l~~~a~~~~d----~~i---~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 3 RFPGEPGYLHIGHAKLICRAKGIAD----QCV---VRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhCC----cEE---EEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 4899999999999999999999764 554 4555444433 3467889999999976
No 42
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.69 E-value=7.5e-08 Score=81.41 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=37.2
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc--CCCCCCCCCHHHHHHHHHH
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD--KYGKKDLVSSKHRCEMVRL 70 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~--~~~K~~~~s~~~Rl~Ml~l 70 (344)
..|+||++|.||++++++|++.... -++ .+.+... .+.++...+.++|+++++.
T Consensus 3 ~~G~FDg~H~GH~~~l~~a~~~~~~---~iv--~v~~d~~~~~~~~~~i~~~eeR~~~l~~ 58 (125)
T TIGR01518 3 TYGTFDLLHWGHINLLERAKQLGDY---LIV--ALSTDEFNLQKQKKAYHSYEHRKLILET 58 (125)
T ss_pred EcceeCCCCHHHHHHHHHHHHcCCE---EEE--EEechHHHhhcCCCCCCCHHHHHHHHHc
Confidence 5799999999999999999986542 233 2333221 1223456788999988874
No 43
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.65 E-value=4.4e-08 Score=93.52 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=52.2
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEe---ccccccCC-c
Q psy9416 15 SYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLS---EWEAQQSE-W 90 (344)
Q Consensus 15 SFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~---d~E~~~~~-~ 90 (344)
.-||+|+||..++++|..+++.. ++ |+...+ ..++|+++|++|++..+++.+++.+. ++-+.+.+ |
T Consensus 153 NANPFTLGH~YLVEqAaaqcDwl--HL----FvV~eD----~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiISrATFP 222 (352)
T COG3053 153 NANPFTLGHRYLVEQAAAQCDWL--HL----FVVKED----SSLFPYEDRLDLVKKGTADLPNVTVHSGSDYIISRATFP 222 (352)
T ss_pred eCCCccchhHHHHHHHHhhCCEE--EE----EEEecc----cccCCHHHHHHHHHHhhccCCceEEecCCCeEEEecccc
Confidence 57999999999999999998865 55 333333 46799999999999999999998775 34444443 3
Q ss_pred cc
Q psy9416 91 TR 92 (344)
Q Consensus 91 sy 92 (344)
.|
T Consensus 223 ~Y 224 (352)
T COG3053 223 AY 224 (352)
T ss_pred hh
Confidence 44
No 44
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.58 E-value=7.5e-07 Score=88.32 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=48.0
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHHhhcCCCeEEe
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLALEDSTWIKLS 81 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lAi~d~~~i~V~ 81 (344)
.+++++|+|||+|.||+.++++|++..+ +|+.|+-+-......| .+..+.++|.+|+. +++..+.+.+.
T Consensus 193 kiv~~~G~FDl~H~GHi~~L~~A~~lgd----~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-a~~~Vd~Vvi~ 264 (353)
T PTZ00308 193 RIVYVDGSFDLFHIGHIRVLQKARELGD----YLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVL-SCRYVDEVVIG 264 (353)
T ss_pred eEEEECCccCCCCHHHHHHHHHHHHhCC----EEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHH-hhCCCCeEEEc
Confidence 4556899999999999999999998654 4542232211122223 35789999999994 88776666553
No 45
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=98.52 E-value=1.7e-06 Score=87.18 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=54.3
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
+.++++|+|||+|.||+.++++|++..+ +|+-|+.+-......| ++..+.++|++|++. ++..+.+.+.
T Consensus 54 ~rV~~~G~FDllH~GH~~~L~qAk~lGd----~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~a-lk~VD~Vv~~----- 123 (418)
T PLN02406 54 VRVYMDGCFDMMHYGHANALRQARALGD----ELVVGVVSDEEIIANKGPPVTPMHERMIMVSG-VKWVDEVIPD----- 123 (418)
T ss_pred eEEEEcCeeCCCCHHHHHHHHHHHHhCC----EEEEEEecChhhhccCCCCcCCHHHHHHHHHh-cCCCceEEeC-----
Confidence 4445899999999999999999999644 4542333322222223 467899999999996 5554544332
Q ss_pred cCCcccHHHHHHHHHHHH
Q psy9416 87 QSEWTRTRVSLDHHEDEL 104 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~ 104 (344)
....++.+++..+-+++
T Consensus 124 -apy~~~~d~~~~li~~~ 140 (418)
T PLN02406 124 -APYAITEEFMNKLFNEY 140 (418)
T ss_pred -CccccchHHHHHHHHHh
Confidence 11223445555544455
No 46
>PRK13671 hypothetical protein; Provisional
Probab=98.50 E-value=1.4e-07 Score=91.29 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC--CCCCHHHHHHHHHHH
Q psy9416 13 CGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK--DLVSSKHRCEMVRLA 71 (344)
Q Consensus 13 gGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~--~~~s~~~Rl~Ml~lA 71 (344)
=-+|||||+||+.+++.|++.++.+ .|| ++|+.++++|. ...+..+|++|+...
T Consensus 6 IaeFNP~H~GHl~~~~~a~~~~~~d--~vi---~vpSg~~~qrg~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 6 IAEYNPFHNGHIYQINYIKNKFPNE--KII---VILSGKYTQRGEIAVASFEKRKKIALKY 61 (298)
T ss_pred EeeeCCccHHHHHHHHHHHHhcCCC--EEE---EEECcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 3699999999999999999999888 885 77888888874 345999999999986
No 47
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.44 E-value=3.7e-06 Score=75.77 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=43.9
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHHhhcC
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLALEDS 75 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lAi~d~ 75 (344)
+.++ .||+||.+|.||..|+..|.+..... -|++ |.+......| ....+.++|.++++..+...
T Consensus 20 ~~Vv-~gGtFDgLH~GHq~LL~~A~~~a~~~--vvIg--ft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~ 86 (177)
T PLN02388 20 GAVV-LGGTFDRLHDGHRLFLKAAAELARDR--IVIG--VCDGPMLSKKQFAELIQPIEERMHNVEEYIKSI 86 (177)
T ss_pred CeEE-EEecCCccCHHHHHHHHHHHHhhhcC--EEEe--cCCChhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence 4454 79999999999999999999865432 3331 3332221112 23569999999999888753
No 48
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.44 E-value=2e-06 Score=74.75 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=41.1
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCC-CC---CCCCCHHHHHHHHHHH
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKY-GK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~-~K---~~~~s~~~Rl~Ml~lA 71 (344)
.++++ ..|.||-+|.||+.+++.|++..+. .+++ +.+...+. .| ....+.++|+++++..
T Consensus 11 ~~~v~-~~G~FDgvH~GH~~ll~~a~~~~~~---~~v~--v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 11 KKIVF-TNGCFDILHAGHVSYLQQARALGDR---LVVG--VNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred CCEEE-EeCcccccCHHHHHHHHHHHHhCCc---cEEE--EECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 34454 7999999999999999999987553 2331 33332211 12 3477889999999863
No 49
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=85.95 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=40.8
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcc-cCCCCCCCCCHHHHHHHHHHHhhc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVH-DKYGKKDLVSSKHRCEMVRLALED 74 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~-~~~~K~~~~s~~~Rl~Ml~lAi~d 74 (344)
++ .|||||++|.||+.+++.|.+..+ +++-| ++-.. ....|+...|+++|.++++..+..
T Consensus 3 V~-vgGTFD~lH~GH~~lL~~A~~~gd----~LiVg-vt~D~~~~~~k~~~~~~e~R~~~v~~fl~~ 63 (322)
T PRK01170 3 TV-VGGTFSKLHKGHKALLKKAIETGD----EVVIG-LTSDEYVRKNKVYPIPYEDRKRKLENFIKK 63 (322)
T ss_pred EE-EccccccCChHHHHHHHHHHHcCC----EEEEE-EccHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 44 699999999999999999987433 44312 22211 111222238999999999987754
No 50
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.36 E-value=5.3e-06 Score=80.18 Aligned_cols=69 Identities=7% Similarity=0.118 Sum_probs=44.6
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccC---CCC-CCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDK---YGK-KDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~---~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
.-|.||.+|+||..+++.|.+.....+. .+| .-|.|.... +.+ ..+.+.++|+++++.. +...+.+-++
T Consensus 3 aiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V-~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~--Gvd~~~~~~F 76 (288)
T TIGR00083 3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAV-LLFEPHPSEQFNWLTAPALTPLEDKARQLQIK--GVEQLLVVVF 76 (288)
T ss_pred EEEeCCccCHHHHHHHHHHHHHHHHhCCCEEE-EEeCCChHHHhCccCCCCCCCHHHHHHHHHHc--CCCEEEEeCC
Confidence 4699999999999999999987665443 343 133442111 111 1267889999999863 3445555554
No 51
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.35 E-value=1.1e-05 Score=78.60 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=45.7
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccC---CCC--CCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDK---YGK--KDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~---~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
.+.-|.||-+|.||..+++.|++..+..+. -++ .-+.|.... +.+ +.+.+.++|+++++.. . .+.+.+-++
T Consensus 16 vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~v-itFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-g-VD~~~~~~F 92 (305)
T PRK05627 16 VLTIGNFDGVHRGHQALLARAREIARERGLPSVV-MTFEPHPREVFAPDKAPARLTPLRDKAELLAEL-G-VDYVLVLPF 92 (305)
T ss_pred EEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEE-EEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-C-CCEEEEecC
Confidence 346899999999999999999997665543 222 123332110 111 3467889999999753 2 555555444
No 52
>PRK07143 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-05 Score=77.67 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=42.2
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCC---CC-CCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKY---GK-KDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~---~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
++++ .-|.||-+|+||..+++.|.+. +.. -+|. .+. ++.. .+ ..+.+.++|+++++.. +...+.+-+
T Consensus 16 ~~vv-aiG~FDGvH~GHq~Ll~~a~~~-~~~--~vV~-tF~--~P~~~~~~~~~~l~~~~er~~~l~~~--Gvd~~~~~~ 86 (279)
T PRK07143 16 KPTF-VLGGFESFHLGHLELFKKAKES-NDE--IVIV-IFK--NPENLPKNTNKKFSDLNSRLQTLANL--GFKNIILLD 86 (279)
T ss_pred CeEE-EEccCCcCCHHHHHHHHHHHHC-CCc--EEEE-EeC--ChHHhcccCcccCCCHHHHHHHHHHC--CCCEEEEeC
Confidence 4444 6799999999999999999863 321 3331 222 2111 11 1367889999998742 344555555
Q ss_pred c
Q psy9416 83 W 83 (344)
Q Consensus 83 ~ 83 (344)
+
T Consensus 87 F 87 (279)
T PRK07143 87 F 87 (279)
T ss_pred C
Confidence 5
No 53
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.27 E-value=2.5e-05 Score=67.99 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=39.5
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcc-cCCCC-CCCCCHHHHHHHHHH
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVH-DKYGK-KDLVSSKHRCEMVRL 70 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~-~~~~K-~~~~s~~~Rl~Ml~l 70 (344)
.+..|+||++|.||+.+++.|++.... -|+ .+.|.. ..+.| +...+.++|.++++.
T Consensus 7 vv~~G~FDgvH~GH~~ll~~a~~~~~~---~vv--~~~~d~~~~~~~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 7 VLCHGVFDLLHPGHVRHLQAARSLGDI---LVV--SLTSDRYVNKGPGRPIFPEDLRAEVLAA 64 (144)
T ss_pred EEEecccCCCCHHHHHHHHHHHHhCCe---EEE--EEeChHHhccCCCCCCCCHHHHHHHHHc
Confidence 347999999999999999999987553 233 244432 11223 356799999999964
No 54
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=98.06 E-value=0.00025 Score=65.93 Aligned_cols=174 Identities=15% Similarity=0.120 Sum_probs=96.7
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC-C--CeEEec
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS-T--WIKLSE 82 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~-~--~i~V~d 82 (344)
.+++++.. -||+|++|-.|++.|++.+ .+ .|+ +.|. -.+.|.+.++.+.|++=.+..++.+ | .+.++.
T Consensus 21 ~~Vvafqt--rnPlHraHe~l~~~a~e~~-~~--~ll---l~pl-vG~~k~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~ 91 (215)
T PF01747_consen 21 RRVVAFQT--RNPLHRAHEYLMRRALEKA-GD--GLL---LHPL-VGPTKPGDIPYEVRVRCYEALIDNYFPKNRVLLSP 91 (215)
T ss_dssp SSEEEEEE--SS---HHHHHHHHHHHHHH-TS--EEE---EEEB-ESB-STTSCCHHHHHHHHHHHHHHCSSTTGEEEEB
T ss_pred CeEEEEEe--CCCCCHHHHHHHHHHHHHh-cC--cEE---EEec-cCCCCcCCCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 46666443 9999999999999999998 33 443 4553 2345778899999999999988883 3 466666
Q ss_pred cccc--cCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCc-ch
Q psy9416 83 WEAQ--QSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSA-DD 158 (344)
Q Consensus 83 ~E~~--~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~-~~ 158 (344)
+... -+||.-. .| ..+++.|| +. .||+|-|...-- .||+ .+
T Consensus 92 lp~~mr~aGPrEa--llhAiirkN~G----------------------------cT-h~IvGrdhAg~g----~~Y~~~~ 136 (215)
T PF01747_consen 92 LPLPMRYAGPREA--LLHAIIRKNYG----------------------------CT-HFIVGRDHAGVG----DFYDPYE 136 (215)
T ss_dssp BESB---SHHHHH--HHHHHHHHHTT-----------------------------S-EEEE-TTTT-SC----BSS-TTH
T ss_pred cCchhcccCcHHH--HHHHHHHHHCC----------------------------Cc-eEEeCCcCCCcc----ccCCccH
Confidence 5543 2444211 22 23455553 34 688999987554 3444 34
Q ss_pred HHHHhhc------CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-cc----cccccHHHHHHHHHcCCCc-cCCCc
Q psy9416 159 INHIAGH------HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-WI----KNEISSTYLRRALRRGDSI-KYLIN 226 (344)
Q Consensus 159 ~e~il~~------~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~~----~~~ISST~IR~~l~~g~~i-~~lVP 226 (344)
.++|++. ..++.+..-.+... .+.+.-... |. ...||+|+||+.|+.|..+ ..+..
T Consensus 137 a~~i~~~~~~el~I~~v~~~~~~Yc~~------------~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~r 204 (215)
T PF01747_consen 137 AQEIFDEYAGELGIEPVPFPEMVYCPK------------CGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMR 204 (215)
T ss_dssp HHHHHHHHHHHCTSEEEE---EEEETT------------TTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-
T ss_pred HHHHHHcCcccCCceEEecceEEEEcC------------CCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCc
Confidence 5566654 23333332211110 112211111 11 2478999999999999765 45788
Q ss_pred HHHHHHHHH
Q psy9416 227 DKVEQYIYQ 235 (344)
Q Consensus 227 ~~V~~YI~~ 235 (344)
++|.+-|.+
T Consensus 205 peV~~~L~~ 213 (215)
T PF01747_consen 205 PEVAAILRR 213 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 55
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=69.88 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=44.3
Q ss_pred CCcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCC--CCCCCCCHHHHHHHHHHHhh
Q psy9416 1 MSSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKY--GKKDLVSSKHRCEMVRLALE 73 (344)
Q Consensus 1 ~~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~--~K~~~~s~~~Rl~Ml~lAi~ 73 (344)
|+.+.|++++ |||||++|.||..|++.|.+. +. +|+-|+.|- .... .+....|++.|++=+...+.
T Consensus 1 ~~~kfm~vav--GGTFd~LH~GHk~LL~~A~~~-G~---~v~IGlTsD-e~~k~~k~~~i~p~~~R~~~l~~fl~ 68 (158)
T COG1019 1 MKIKFMKVAV--GGTFDRLHDGHKKLLEVAFEI-GD---RVTIGLTSD-ELAKKKKKEKIEPYEVRLRNLRNFLE 68 (158)
T ss_pred CCccceEEEe--cccchhhhhhHHHHHHHHHHh-CC---eEEEEEccH-HHHHHhccccCCcHHHHHHHHHHHHH
Confidence 6677777665 999999999999999999884 43 454233221 1111 22356788999877665443
No 56
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=97.91 E-value=0.00013 Score=72.56 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=40.1
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc---CCCC-CCCCCHHHHHHHHHH
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD---KYGK-KDLVSSKHRCEMVRL 70 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~---~~~K-~~~~s~~~Rl~Ml~l 70 (344)
+.++..|.||-+|.||+.++++|++..+ .++ +-+..+ ...| ++..+.++|++|++.
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk~~g~----~Li---vgv~~d~~i~~~K~~pi~~~eeR~~~l~~ 71 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQARALGD----ELF---VGCHSDEEIMRNKGPPVMHQEERYEALRA 71 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHHHhCC----EEE---EEeCCHHHHhhcCCCCCCCHHHHHHHHHh
Confidence 4445799999999999999999999654 443 233222 1122 347799999999984
No 57
>PRK13670 hypothetical protein; Provisional
Probab=97.79 E-value=0.00015 Score=72.87 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=43.0
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHH
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLA 71 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lA 71 (344)
||+++| =--|||+|+||..+++.|++..+. +..++ ++|.+. ....+.+.+..+|.+|+...
T Consensus 1 Mk~~GI-IaEfdg~H~GH~~~i~~a~~~a~~-~~~~~---Vmp~~f~qrg~p~i~~~~~R~~~a~~~ 62 (388)
T PRK13670 1 MKVTGI-IVEYNPFHNGHLYHLNQAKKLTNA-DVTIA---VMSGNFVQRGEPAIVDKWTRAKMALEN 62 (388)
T ss_pred CceeEE-EeeeCCcCHHHHHHHHHHHHHHhC-CCcEE---EecHHHhCCCCCCCCCHHHHHHHHHHc
Confidence 466664 578999999999999999998776 33222 335432 12223478999999998863
No 58
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=97.68 E-value=0.0014 Score=65.25 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=105.6
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCC---CeEEecc
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDST---WIKLSEW 83 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~---~i~V~d~ 83 (344)
++++ -=|-||+|+||.+|++.|++.++.+ -|+ +.|.- .+.|.+.++.+-|++-.+..++..+ .+.+..+
T Consensus 158 ~Vva--fqtrnP~HraHe~l~~~a~~~~~~~--~ll---l~plv-G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~l 229 (353)
T cd00517 158 RVVA--FQTRNPMHRAHEELMKRAAEKLLND--GLL---LHPLV-GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAIL 229 (353)
T ss_pred eEEE--eecCCCCchhhHHHHHHHHHHcCCC--cEE---EEecc-CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 4454 4689999999999999999987523 332 45542 2447788999999999999888864 2444444
Q ss_pred c--cccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCc-chH
Q psy9416 84 E--AQQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSA-DDI 159 (344)
Q Consensus 84 E--~~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~-~~~ 159 (344)
+ ..-+||.-. .| ..+++.|+ +. .||+|-|...--.. ..||+ .+.
T Consensus 230 p~~mryAGPrEa--llhAiirkN~G----------------------------cT-hfIvGrDHAG~g~~-~~yY~~y~a 277 (353)
T cd00517 230 PLPMRYAGPREA--LWHAIIRKNYG----------------------------AT-HFIVGRDHAGVGHP-GDYYGPYDA 277 (353)
T ss_pred cchhcccCcHHH--HHHHHHHHhCC----------------------------CC-eEEECCCCCCCCCc-cccCCcchh
Confidence 3 344565321 12 23455553 44 79999887533210 12333 345
Q ss_pred HHHhhcCC----E--EEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c---ccccccHHHHHHHHHcCCCc-cCCCcHH
Q psy9416 160 NHIAGHHG----I--VVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W---IKNEISSTYLRRALRRGDSI-KYLINDK 228 (344)
Q Consensus 160 e~il~~~~----~--vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~---~~~~ISST~IR~~l~~g~~i-~~lVP~~ 228 (344)
++|++.+. + +.+.---+.. + ...+...+. + ....||+|+||+.|+.|..+ ..+..++
T Consensus 278 q~i~~~~~~~l~I~~v~~~~~~Yc~-----------~-c~~~~~~~~cp~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpe 345 (353)
T cd00517 278 QEIFKKLAPELGIEPVPFREAAYCP-----------K-CDGMASEDTCPHGEDFLNISGTKLRKMLREGEKPPEWFMRPE 345 (353)
T ss_pred HHHHHhCcccCCceEEecceeEEec-----------C-CCeEEecccCCCCCceeeeCHHHHHHHHHCCCCCCCccCcHH
Confidence 67776542 1 1111100000 0 011112211 1 14579999999999999754 4578889
Q ss_pred HHHHHHH
Q psy9416 229 VEQYIYQ 235 (344)
Q Consensus 229 V~~YI~~ 235 (344)
|.+-|.+
T Consensus 346 V~~~L~~ 352 (353)
T cd00517 346 VAKVLRE 352 (353)
T ss_pred HHHHHhh
Confidence 9887765
No 59
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.67 E-value=0.00061 Score=66.44 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=45.0
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccCCCCC-----CCCCHHHHHHHHHHHhhcCCCeEEeccc
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDKYGKK-----DLVSSKHRCEMVRLALEDSTWIKLSEWE 84 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~~~K~-----~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E 84 (344)
.=|.||=+|+||..++..|.+.....+. -+| .-+.|......++ .+.+.++|+++++.. ....+.+.++.
T Consensus 20 ~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~V-itF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~--gvd~~~v~~F~ 95 (304)
T COG0196 20 TIGNFDGVHLGHQKLLAQALEAAEKRGLPVVV-ITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY--GVDALVVLDFD 95 (304)
T ss_pred EEEcCCccchhHHHHHHHHHHHHHHhCCceEE-EEecCCCHHHcCCCCCccccCCHHHHHHHHHhc--CCcEEEEEeCC
Confidence 5799999999999999999987776654 332 1333322111111 267889999887743 23455565554
No 60
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.63 E-value=0.0012 Score=69.60 Aligned_cols=201 Identities=15% Similarity=0.092 Sum_probs=119.5
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC--eEEecc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW--IKLSEW 83 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~--i~V~d~ 83 (344)
.++++ -=|-||+|+||..|++.|++.++. -| ++.|.- .+.|.+.++.+-|++=.+.+++..|. +.+..+
T Consensus 187 ~~v~a--fqtrnP~Hr~He~l~~~a~~~~d~---~l---ll~p~~-G~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~ 257 (568)
T PRK05537 187 RRVVA--FQTRNPLHRAHEELTKRAAREVGA---NL---LIHPVV-GMTKPGDIDHFTRVRCYEALLDKYPPATTLLSLL 257 (568)
T ss_pred CcEEE--EecCCCCcHHHHHHHHHHHHhcCC---eE---EEecCC-CCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 34555 457999999999999999997763 23 366643 34577889999999999988887764 334444
Q ss_pred cc--ccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCc--CCCCCCc-c
Q psy9416 84 EA--QQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMA--VPNLWSA-D 157 (344)
Q Consensus 84 E~--~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~--~p~~W~~-~ 157 (344)
+. .-+||.-. .| ..+++.|+ +. .||+|-|...-.. +.+.||+ .
T Consensus 258 p~~mryaGprea--i~hAi~r~N~G----------------------------ct-h~ivGrdhAg~~~~~~~g~~Y~~~ 306 (568)
T PRK05537 258 PLAMRMAGPREA--LWHAIIRRNYG----------------------------CT-HFIVGRDHAGPGKDSRGKPFYGPY 306 (568)
T ss_pred cchhcccCcHHH--HHHHHHHHhCC----------------------------CC-eEEECCCCCCCCCCCcCcccCCch
Confidence 33 34555321 12 23444553 34 6999988764421 0012444 3
Q ss_pred hHHHHhhcCC------EEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c---ccccccHHHHHHHHHcCCCc-cCCCc
Q psy9416 158 DINHIAGHHG------IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W---IKNEISSTYLRRALRRGDSI-KYLIN 226 (344)
Q Consensus 158 ~~e~il~~~~------~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~---~~~~ISST~IR~~l~~g~~i-~~lVP 226 (344)
+.++|+..+. ++.+.---|. . -...+...+. | ....+|+|+||+.|+.|..+ ..+..
T Consensus 307 ~a~~i~~~~~~~l~i~~~~~~~~~Y~-----------~-~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~~pP~~f~r 374 (568)
T PRK05537 307 DAQELFAKYADEIGITMVPFKEMVYV-----------Q-DKAQYVPVDEVPQGATVLTISGTELRRRLREGLEIPEWFSF 374 (568)
T ss_pred HHHHHHHhCccccCceEEecceeEEE-----------c-CCCeEEecCcCCCCcceeccCHHHHHHHHHCCCCCChhhcH
Confidence 4567777641 1111111000 0 0112222221 1 14679999999999999755 45889
Q ss_pred HHHHHHHHHc-----------CCCCCCCCCCcccchhhhhhhhhhccCC
Q psy9416 227 DKVEQYIYQH-----------GLYSVVESPHLEVSPILDLLSNLNNNFL 264 (344)
Q Consensus 227 ~~V~~YI~~~-----------~LY~~~~~~k~~~~~~~~~~~~l~~~~~ 264 (344)
|+|.+-+.+. -|.+-.-+|||+ +...|+..+.
T Consensus 375 peV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKST------ia~~La~~L~ 417 (568)
T PRK05537 375 PEVVAELRRTYPPRHKQGFTVFFTGLSGAGKST------IAKALMVKLM 417 (568)
T ss_pred HHHHHHHHHHhccccCCCeEEEEECCCCChHHH------HHHHHHHHhh
Confidence 9999855542 111345578887 6666666554
No 61
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.60 E-value=0.00072 Score=68.99 Aligned_cols=66 Identities=24% Similarity=0.297 Sum_probs=43.0
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHHhhcCCCe
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLALEDSTWI 78 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lAi~d~~~i 78 (344)
+++ +..|.||.+|.||+++++.|++..+.. .| ++-+.......| .+..+.++|.++++ ++....|+
T Consensus 341 ~iv-~~~G~fD~~H~GH~~~l~~a~~~~~~l--~v--~v~~d~~~~~~k~~~~pi~~~~~R~~~~~-~~~~vd~v 409 (473)
T PRK11316 341 KIV-MTNGCFDILHAGHVSYLANARKLGDRL--IV--AVNSDASVKRLKGEGRPVNPLEQRMAVLA-ALEAVDWV 409 (473)
T ss_pred eEE-EEecccccCCHHHHHHHHHHHHhCCee--EE--EEeCchhHHHhCCCCCCCCCHHHHHHHHH-hcCcCCEE
Confidence 445 479999999999999999999975532 22 122211111112 34678899999984 45555665
No 62
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=97.55 E-value=0.0029 Score=63.80 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=106.3
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhc-CC--CeEEecc
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALED-ST--WIKLSEW 83 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d-~~--~i~V~d~ 83 (344)
++++ -=|-||+|+||..|++.|.+..+ -++ +.|.- .+.|.+.++.+-|++-.+..++. .| .+.+..+
T Consensus 188 ~Vva--fqTrnP~HraHe~l~~~a~e~~d----~ll---l~plv-G~~k~~di~~~~r~~~~~~~~~~y~p~~~v~l~~l 257 (391)
T PRK04149 188 TVVA--FQTRNPPHRAHEYLQKCALEIVD----GLL---LNPLV-GETKSGDIPAEVRMEAYEALLKNYYPKDRVLLSVT 257 (391)
T ss_pred eEEE--eecCCCCchHHHHHHHHHHHhcC----eEE---EecCc-CCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 4444 45799999999999999988665 332 44543 34577889999999999988885 33 3445544
Q ss_pred cc--ccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHH
Q psy9416 84 EA--QQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDIN 160 (344)
Q Consensus 84 E~--~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e 160 (344)
+. .-+||.-. .| ..+++.|+ +. .||+|-|...--. .|...+.+
T Consensus 258 p~~mryAGPrEa--~lhAivrkN~G----------------------------cT-h~IvGrDHAG~g~---~Y~~~~aq 303 (391)
T PRK04149 258 PAAMRYAGPREA--IFHAIVRKNYG----------------------------CT-HFIVGRDHAGVGD---YYGPYDAQ 303 (391)
T ss_pred cchhcccCcHHH--HHHHHHHHhCC----------------------------CC-eEEECCCCCCccc---cCCCchHH
Confidence 43 33555321 22 33455553 44 7999999864432 23333566
Q ss_pred HHhhcC-------CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c----ccccccHHHHHHHHHcCCCc-cCCCcH
Q psy9416 161 HIAGHH-------GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W----IKNEISSTYLRRALRRGDSI-KYLIND 227 (344)
Q Consensus 161 ~il~~~-------~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~----~~~~ISST~IR~~l~~g~~i-~~lVP~ 227 (344)
+|+..+ .++.+.---+.. + ...+..... | ....||+|+||+.|+.|..+ ..+..+
T Consensus 304 ~i~~~~~~~~l~I~~v~~~~~~Yc~-----------~-c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rp 371 (391)
T PRK04149 304 EIFDEFTEEELGITPLKFEEAFYCP-----------K-CGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRP 371 (391)
T ss_pred HHHHhCCcccCCceEEecceeEEec-----------C-CCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcH
Confidence 777764 112111111100 0 112222211 1 14579999999999999754 458889
Q ss_pred HHHHHHHHc
Q psy9416 228 KVEQYIYQH 236 (344)
Q Consensus 228 ~V~~YI~~~ 236 (344)
+|.+-|.+.
T Consensus 372 eV~~iL~~~ 380 (391)
T PRK04149 372 EVAEVLIKG 380 (391)
T ss_pred HHHHHHHHH
Confidence 999888775
No 63
>PLN02413 choline-phosphate cytidylyltransferase
Probab=97.52 E-value=0.002 Score=62.07 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=44.2
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCccc-CCCCCCCCCHHHHHHHHHHHhhcCCCe
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHD-KYGKKDLVSSKHRCEMVRLALEDSTWI 78 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~-~~~K~~~~s~~~Rl~Ml~lAi~d~~~i 78 (344)
++++..|+||=+|.||+.++++|++..+.+ .++.|+-+-... .++.++..+.++|.+++.. ++--..+
T Consensus 28 ~rVyvdG~FDLfH~GHir~L~qAK~lg~~d--~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~a-cKyVDeV 96 (294)
T PLN02413 28 VRVYADGIYDLFHFGHARSLEQAKKLFPNT--YLLVGCCNDELTHKYKGKTVMTEDERYESLRH-CKWVDEV 96 (294)
T ss_pred eEEEEeCchhhCCHHHHHHHHHHHHhCCCC--EEEEEecccHHHHhcCCCCCCCHHHHHHHHHh-cccccEE
Confidence 344479999999999999999999975444 554222211111 1122467899999999884 5544443
No 64
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0041 Score=61.75 Aligned_cols=175 Identities=17% Similarity=0.137 Sum_probs=103.9
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCC---C--eEEe
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDST---W--IKLS 81 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~---~--i~V~ 81 (344)
|++. .--|+||+|+||-.|.+.|.+..+. ++ +-|.- ...|.+..+++-|++-.+..++... . +.+-
T Consensus 184 k~vv-afQTRNp~HraHEyl~K~Al~~vdg----ll---v~plV-G~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~ 254 (397)
T COG2046 184 KTVV-AFQTRNPPHRAHEYLQKRALEKVDG----LL---VHPLV-GATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVL 254 (397)
T ss_pred eEEE-EEecCCCchHHHHHHHHHHHHhcCc----EE---EEeee-ccccCCCchHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 4444 4589999999999999999987763 21 22321 1246778999999999998888752 2 3344
Q ss_pred ccccccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcc-hH
Q psy9416 82 EWEAQQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSAD-DI 159 (344)
Q Consensus 82 d~E~~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~-~~ 159 (344)
.|...-.||.-.+ + .-+++.|+ +. -|++|-|...-= .||++ +.
T Consensus 255 ~~aMRyagPrEa~--~HaIIRkNyG----------------------------cT-HfIVGRDHAGvG----~yYg~Y~a 299 (397)
T COG2046 255 PAAMRYAGPREAL--LHAIIRKNYG----------------------------CT-HFIVGRDHAGVG----DYYGPYDA 299 (397)
T ss_pred HHHhhhcCcHHHH--HHHHHHhhcC----------------------------Ce-eeeecCCCCCcc----ccCCcccH
Confidence 4444445553211 1 11334442 33 689999987544 45553 45
Q ss_pred HHHhhcCC----EEEE-cCCCCCchhhhhhhhhhhhcCCeEEEEe-cc---c-cccccHHHHHHHHHcCC-CccCCCcHH
Q psy9416 160 NHIAGHHG----IVVI-TRGDTNPAKFIYQHDILSKHMNKIIIVN-EW---I-KNEISSTYLRRALRRGD-SIKYLINDK 228 (344)
Q Consensus 160 e~il~~~~----~vVv-~R~g~~~~~~~~~~~~L~~~~~~i~~l~-~~---~-~~~ISST~IR~~l~~g~-~i~~lVP~~ 228 (344)
++|+..+. +.++ -|.-. + ..+. +.+.-.. .| . ...+|+|.+|+.|+.|. .-..+.-|+
T Consensus 300 q~if~~f~~eLgI~p~~f~e~~----Y------C~~c-~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPE 368 (397)
T COG2046 300 QEIFDEFSPELGITPVFFEEFF----Y------CPKC-GQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPE 368 (397)
T ss_pred HHHHHhcccccCcEEEecccee----e------cccc-cCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHH
Confidence 67877643 2111 11100 0 0000 0110111 11 1 45799999999999995 445677788
Q ss_pred HHHHHHHc
Q psy9416 229 VEQYIYQH 236 (344)
Q Consensus 229 V~~YI~~~ 236 (344)
|.+-|.+.
T Consensus 369 V~~vl~k~ 376 (397)
T COG2046 369 VADVLRKS 376 (397)
T ss_pred HHHHHHHh
Confidence 88888774
No 65
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=97.31 E-value=0.00031 Score=60.97 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=41.9
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCC--CC-CCCCCHHHHHHHHHH
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKY--GK-KDLVSSKHRCEMVRL 70 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~--~K-~~~~s~~~Rl~Ml~l 70 (344)
|+ .+|+||=+|.||++.+++|++..+.. .| .+++....- +| ++..+.++|++|++.
T Consensus 4 V~-~~GtFDilH~GHi~~L~~Ak~lGd~l--iV---v~a~de~~~~~~k~~pi~~~~qR~evl~s 62 (140)
T COG0615 4 VW-ADGTFDILHPGHIEFLRQAKKLGDEL--IV---VVARDETVIKRKKRKPIMPEEQRAEVLES 62 (140)
T ss_pred EE-EeeEEEEechhHHHHHHHHHHhCCeE--EE---EEeccHHHHHhcCCCCCCCHHHHHHHHHc
Confidence 54 69999999999999999999955232 33 466665543 23 456799999999884
No 66
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.77 E-value=0.0042 Score=61.82 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=42.9
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhc
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALED 74 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d 74 (344)
+.++ +=--|||+|+||..+++.|++.+..+ .++ ..++......+.+...+...|.+|.-..-.|
T Consensus 2 ~~~G-ii~eyNPfHnGH~y~i~~Ar~~~~~d--~~i-~~msgdf~qRgepai~~k~~r~~~aL~~g~D 65 (358)
T COG1323 2 KSIG-IIAEYNPFHNGHQYHINKAREEFKGD--EII-AVMSGDFTQRGEPAIGHKWERKKMALEGGAD 65 (358)
T ss_pred Ccee-eeeecCcccccHHHHHHHHHHhccCC--ceE-EeeecchhhcCCCccccHHHHHhhhhhcCce
Confidence 3444 24679999999999999999977776 343 1244333333445667888888886655444
No 67
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.26 E-value=0.0054 Score=61.84 Aligned_cols=62 Identities=26% Similarity=0.252 Sum_probs=30.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHH
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLA 71 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lA 71 (344)
||+++| ---|||+|+||+..++++++..+.+ .|| +++|...---..+..++.-.|.+|--..
T Consensus 1 Mk~~GI-IaEYNPFHnGH~y~i~~~k~~~~ad--~ii-~vMSGnFvQRGEPAi~dKw~RA~~AL~~ 62 (388)
T PF05636_consen 1 MKVVGI-IAEYNPFHNGHLYQIEQAKKITGAD--VII-AVMSGNFVQRGEPAIIDKWTRAEMALKN 62 (388)
T ss_dssp -------E---TT--HHHHHHHHHHH---TSS--EEE-EEE--TTSBTSSB-SS-HHHHHHHHHHH
T ss_pred CCCCCe-EEeECCccHHHHHHHHHHhccCCCC--EEE-EEECCCcccCCCeeeCCHHHHHHHHHHc
Confidence 456663 5689999999999999999999987 655 3455433222234567888898885443
No 68
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=96.24 E-value=0.013 Score=51.76 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=42.6
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCccc---CCCC--CCCCCHHHHHHHHHHHhhcCCCeE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHD---KYGK--KDLVSSKHRCEMVRLALEDSTWIK 79 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~---~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~ 79 (344)
.+.++ .=|.||=+|+||..+++.|.+.....+. .++ ..|.|... .+.+ ..+.+.++|+++++.. +...+.
T Consensus 5 ~~~~v-~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v-~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~--Gvd~~~ 80 (157)
T PF06574_consen 5 KKSVV-AIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVV-LTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL--GVDYVI 80 (157)
T ss_dssp S-EEE-EES--TT--HHHHHHHHHHHHHHHHCT-EEEE-EEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT--TESEEE
T ss_pred CCcEE-EEeCCCCccHHHHHHHHHHhhhhhhcccceEE-EEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc--CCCEEE
Confidence 34444 6799999999999999999998866654 332 24554321 1112 2378999999999863 233454
Q ss_pred Eeccc
Q psy9416 80 LSEWE 84 (344)
Q Consensus 80 V~d~E 84 (344)
+-++.
T Consensus 81 ~~~F~ 85 (157)
T PF06574_consen 81 VIPFT 85 (157)
T ss_dssp EE-CC
T ss_pred Eecch
Confidence 54554
No 69
>KOG2803|consensus
Probab=95.45 E-value=0.027 Score=54.88 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=44.3
Q ss_pred CcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHH
Q psy9416 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRL 70 (344)
Q Consensus 2 ~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~l 70 (344)
+++..+.-+-..|.||-+|.||-..+.+|++ ++. +++.|+-+--....+| ++..+.++|++|++.
T Consensus 3 ~~~~~~~rVw~DGCfDm~HyGHanaLrQAka-lGd---kLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ 68 (358)
T KOG2803|consen 3 PKKNRPVRVWADGCFDMVHYGHANALRQAKA-LGD---KLIVGVHSDEEITLNKGPPVFTDEERYEMVKA 68 (358)
T ss_pred CcCCCceeEEeccchhhhhhhhhHHHHHHHH-hCC---eEEEEecchHHHHhcCCCCcccHHHHHHHHhh
Confidence 3343333334799999999999999999986 554 5543444433333345 356799999999884
No 70
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=95.39 E-value=0.028 Score=57.19 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=43.6
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC--CC-CCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK--YG-KKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~--~~-K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
.+++.+|+||=+|.||+.++++|++..+ .++.|+-+-.... +. +.+..+.++|.+++.. ++--..+.+
T Consensus 252 ~iVyv~G~FDlfH~GHi~~L~~Ak~lGd----~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~a-ck~VD~VVi 322 (418)
T PLN02406 252 RIVYIDGAFDLFHAGHVEILRLARALGD----FLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA-CRYVDEVII 322 (418)
T ss_pred eEEEECCeeccCCHHHHHHHHHHHHhCC----EEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhc-cCcccEEEe
Confidence 3445799999999999999999998533 4432232221111 11 2456799999998874 555444433
No 71
>KOG3351|consensus
Probab=93.61 E-value=0.072 Score=50.49 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=46.6
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC---C-CCCHHHHHHHHHHHhhcC-CCeEEecccc
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK---D-LVSSKHRCEMVRLALEDS-TWIKLSEWEA 85 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~---~-~~s~~~Rl~Ml~lAi~d~-~~i~V~d~E~ 85 (344)
.+|||||=.|.||.-+...|.. +..+ +++.|+ -+.+--.|+ . ..|.+.|.+=+...+.+. |.+.+.-..+
T Consensus 146 alGGTFDrLH~gHKvLLs~aa~-la~~--~lVvGV--~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~vpi 220 (293)
T KOG3351|consen 146 ALGGTFDRLHDGHKVLLSVAAE-LASD--RLVVGV--TDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNVRVVPI 220 (293)
T ss_pred EeccchhhhccchHHHHHHHHH-Hhhc--eEEEEe--cChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3699999999999999888877 4555 565332 122211222 2 458899999999988885 5555544444
No 72
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.39 E-value=1.8 Score=44.07 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=77.0
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC---C---CCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG---K---KDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~---K---~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
+.+--|.||=.|.||+.....|+...+ .++ +--.++.-- | ++.-+.++|..++. +++...|+.+-
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lgd----~Li---vg~NsDaSvkrLKG~~RPin~~~~Ra~vLa-~L~~VD~vV~F- 404 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALGD----RLI---VGVNSDASVKRLKGESRPINSEEDRAAVLA-ALESVDLVVIF- 404 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhCC----eEE---EEeccchhhhhhcCCCCCCCcHHHHHHHHh-hcccceEEEEe-
Confidence 445899999999999999999999665 343 222333221 2 24456666766654 56666665431
Q ss_pred cccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
.-||=.+|-+.+ .| | .++=|.| |.. +++
T Consensus 405 ----------~edTP~~LI~~~------~P-------d----------------ilVKGgD----------y~~---~~i 432 (467)
T COG2870 405 ----------DEDTPEELIEAV------KP-------D----------------ILVKGGD----------YKI---EKI 432 (467)
T ss_pred ----------cCCCHHHHHHHh------Cc-------c----------------eEEccCC----------CCh---hhc
Confidence 113333344343 13 2 5677777 442 443
Q ss_pred hhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcC
Q psy9416 163 AGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRG 218 (344)
Q Consensus 163 l~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g 218 (344)
.. .+....+++.+.+++. ..+.|-|.|=+.++..
T Consensus 433 ~g--------------------~~~v~~~GG~v~~i~f--~~g~STt~ii~ki~~~ 466 (467)
T COG2870 433 VG--------------------ADIVEAYGGEVLLIPF--EEGKSTTKIIEKIRAK 466 (467)
T ss_pred cc--------------------hhhhhhcCCeEEEEec--ccCCcHHHHHHHHhcc
Confidence 21 1223456778888865 4789999998888754
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=82.75 E-value=3.8 Score=39.79 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++..+. -|+-.+.-|....+.+ +-+.+.++|+++++.+
T Consensus 32 LH~GH~~LI~~a~~~a~~---vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 32 LHEGHLSLVRAARARADV---VVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred hhHHHHHHHHHHHHhCCE---EEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 999999999999987663 3432333444333211 2357889999998864
No 74
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=80.42 E-value=4.7 Score=39.15 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++..+. -|+-.+.-|....+.. +-+.+.++|+++++.+
T Consensus 33 LH~GH~~LI~~a~~~a~~---vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 33 LHDGHMSLIDRAVAENDV---VVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred ccHHHHHHHHHHHHhCCe---EEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 999999999999987642 3332222332222211 2356889999998864
No 75
>KOG2803|consensus
Probab=79.90 E-value=2.9 Score=41.20 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.2
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLF 35 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~ 35 (344)
.|+...|.||=+|.||+...+.|++..+
T Consensus 199 kvVYvdGaFDLFH~GHl~~Le~ak~lgd 226 (358)
T KOG2803|consen 199 KVVYVDGAFDLFHAGHLDFLEKAKRLGD 226 (358)
T ss_pred cEEEEcCchhhhccchHHHHHHHHhccC
Confidence 4455799999999999999999998665
No 76
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=79.42 E-value=5.6 Score=38.51 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++.... -|+-.+.-|....+.+ +-+.+.++++++++.+
T Consensus 33 LH~GH~~LI~~a~~~a~~---vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 33 LHEGHLSLVRRARAENDV---VVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred ccHHHHHHHHHHHHhCCE---EEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 999999999999987642 2332233333322211 2356789999998864
No 77
>KOG4238|consensus
Probab=77.00 E-value=16 Score=37.05 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=41.3
Q ss_pred CccchhhHHHHHHHHHHHHHhcccCC--EEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhc
Q psy9416 14 GSYNPPTNMHLRMFELARDHLFKLGH--TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALED 74 (344)
Q Consensus 14 GSFdP~H~GHl~ma~~A~~~l~~~~~--~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d 74 (344)
--=||+|+||--+++..++.+-..|+ -|+ ++-|- -.|.|.+.+|..-|+.--...++.
T Consensus 422 qlrnpvhnghallm~dt~~~ll~~g~k~pvl--llhpl-ggwtkdddvpl~~rmkqh~avl~e 481 (627)
T KOG4238|consen 422 QLRNPVHNGHALLMQDTRRRLLERGYKHPVL--LLHPL-GGWTKDDDVPLDWRMKQHAAVLEE 481 (627)
T ss_pred eecCccccchhhHhHhHHHHHHHhcccCceE--EEecC-CCCccCCCccchhhhHHHHHHHHh
Confidence 34599999999999999988776655 443 35553 357787778888887665555544
No 78
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=76.12 E-value=6.4 Score=38.14 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||..+++.|++.... -|+-.+..|....+.+ +-+.+.++|+++++.+
T Consensus 33 lH~GH~~Li~~a~~~a~~---vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 33 LHEGHLSLVREARAEADI---VVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred eeHHHHHHHHHHHHhCCE---EEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 999999999999987642 2332222222221111 2356789999998864
No 79
>KOG2804|consensus
Probab=71.67 E-value=8.7 Score=37.73 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=40.2
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC-CCC---CCCCCHHHHHHHHH
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK-YGK---KDLVSSKHRCEMVR 69 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~-~~K---~~~~s~~~Rl~Ml~ 69 (344)
++-+...|-||=+|.||.+-+++|...+... .++ +-.|++- -+| ....+..+|++-++
T Consensus 63 PVRVYADGIyDLFH~GHarqL~QaK~~FPNv--yLi---VGvc~De~Thk~KG~TVm~e~ERyE~lr 124 (348)
T KOG2804|consen 63 PVRVYADGIYDLFHYGHARQLEQAKKLFPNV--YLI---VGVCSDELTHKFKGRTVMNENERYEALR 124 (348)
T ss_pred ceEEEccchHHHhhhhHHHHHHHHHHhCCCe--EEE---EeecCchhhhhccCceecChHHHHHHhh
Confidence 4445589999999999999999999987754 443 3334442 233 23568888987555
No 80
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=59.05 E-value=73 Score=30.26 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=51.8
Q ss_pred cccCceEEEeCCccchhhHHHHHHHHHHHHHhcc-cCCEEEEeeecCcccCC---------CCCCCCCHHHHHHHHHHHh
Q psy9416 3 SAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFK-LGHTVCGGIMSPVHDKY---------GKKDLVSSKHRCEMVRLAL 72 (344)
Q Consensus 3 ~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~-~~~~Vv~g~~sP~~~~~---------~K~~~~s~~~Rl~Ml~lAi 72 (344)
+...+.|+-||..=.||...++..++...+.+.. -+..+| |+-=+|.+. .=+..-+.++|+++.++..
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V--YI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~ 177 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV--YIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLK 177 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh--hHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHH
Confidence 4456678889998899999999988776655442 111222 555444431 1123368899999999888
Q ss_pred hcCCC--eEEecc
Q psy9416 73 EDSTW--IKLSEW 83 (344)
Q Consensus 73 ~d~~~--i~V~d~ 83 (344)
+..+. +.||++
T Consensus 178 ~~~~~~pi~vD~m 190 (237)
T PF00837_consen 178 EEFPQCPIVVDTM 190 (237)
T ss_pred hhCCCCCEEEEcc
Confidence 77654 556655
No 81
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=55.46 E-value=25 Score=34.12 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=29.8
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 15 SYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 15 SFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
|--=.|-||+.+++.|+...+. -|+-.|+-|...++.. +-+-+.+.=+++|+.+
T Consensus 29 TMGaLHeGHlsLi~~A~~~~d~---vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 29 TMGALHEGHLSLIRRARAENDV---VVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp E-SS--HHHHHHHHHHHHHSSE---EEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred CCchhhHHHHHHHHHHHhCCCE---EEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 3334699999999999987764 3444466777666543 2234555567777654
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=50.74 E-value=32 Score=36.27 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=36.6
Q ss_pred CCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 13 CGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 13 gGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
=-|-==.|-||+.|++.|++.++. -|+-.|+-|...++.. +-+-+.+.=+++|+.+
T Consensus 25 VPTMG~LH~GHlsLi~~A~~~~d~---vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 25 VPTMGALHQGHLSLIRRARQENDV---VLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred ECCCcchhHHHHHHHHHHHHhCCE---EEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 344445799999999999997663 3443455666555532 2345667777777764
No 83
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=36.60 E-value=37 Score=30.97 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.6
Q ss_pred CCCccCCCcHHHHHHHHHcCCCC
Q psy9416 218 GDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 218 g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
+..-+.-||+.|++||++|++--
T Consensus 92 ddK~k~~LPddVI~YmrdNgI~V 114 (196)
T PRK15364 92 DAKTKEEVPEDVIKYMRDNGILI 114 (196)
T ss_pred CCcccccCCHHHHHHHHHcCcee
Confidence 44556789999999999998764
No 84
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=36.50 E-value=43 Score=29.80 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=28.1
Q ss_pred cCCEEEEcCCCCCchhhhhhhhhhhhc-CCeEEEEecc---ccccccHHHHHHHH
Q psy9416 165 HHGIVVITRGDTNPAKFIYQHDILSKH-MNKIIIVNEW---IKNEISSTYLRRAL 215 (344)
Q Consensus 165 ~~~~vVv~R~g~~~~~~~~~~~~L~~~-~~~i~~l~~~---~~~~ISST~IR~~l 215 (344)
.++.+|+.+..++....+.+...-... +-.|++++.- .-.+||||.||+-.
T Consensus 92 ~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrge 146 (158)
T COG1019 92 DFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRGE 146 (158)
T ss_pred ceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhhc
Confidence 478899998877544322211111111 1245555431 14589999999753
No 85
>PRK13660 hypothetical protein; Provisional
Probab=36.03 E-value=3.4e+02 Score=24.68 Aligned_cols=138 Identities=12% Similarity=0.212 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCCeEEeccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEe
Q psy9416 62 KHRCEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCG 141 (344)
Q Consensus 62 ~~Rl~Ml~lAi~d~~~i~V~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~G 141 (344)
..|-+++++.-++..||-+.- ..+--..+.+++..||+.| | +.++..++=
T Consensus 30 aL~~~l~~~~e~G~~wfi~gg---alG~d~wAaEvvl~LK~~y-------p--------------------~lkL~~~~P 79 (182)
T PRK13660 30 AIKRKLIALLEEGLEWVIISG---QLGVELWAAEVVLELKEEY-------P--------------------DLKLAVITP 79 (182)
T ss_pred HHHHHHHHHHHCCCCEEEECC---cchHHHHHHHHHHHHHhhC-------C--------------------CeEEEEEeC
Confidence 344444554334455654421 1222245667788999998 4 366665542
Q ss_pred ccccccCcCCCCCCcch---HHHHhhcCCEEEEcCCCC--CchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHH
Q psy9416 142 VDVLESMAVPNLWSADD---INHIAGHHGIVVITRGDT--NPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALR 216 (344)
Q Consensus 142 sD~l~~~~~p~~W~~~~---~e~il~~~~~vVv~R~g~--~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~ 216 (344)
. .... ..|..++ +..|++.++++++.-+.. .+.++......+-.....++.+=++....=..-.+|.+.+
T Consensus 80 F---~~q~--~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~k 154 (182)
T PRK13660 80 F---EEHG--ENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAKK 154 (182)
T ss_pred c---cchh--hcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHHH
Confidence 2 2233 2688742 456888999988865543 3544433334443444555555443222222234677776
Q ss_pred c----CCCccCCCcHHHHHHHH
Q psy9416 217 R----GDSIKYLINDKVEQYIY 234 (344)
Q Consensus 217 ~----g~~i~~lVP~~V~~YI~ 234 (344)
. |..+..+-|+...+.+.
T Consensus 155 ~~~~~~y~i~~I~~~~l~~~~~ 176 (182)
T PRK13660 155 KQEKEDYPLDLITFDDLQEIAE 176 (182)
T ss_pred hhhccCceEEEeCHHHHHHHHH
Confidence 6 77888888888777654
No 86
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=32.78 E-value=88 Score=30.48 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=33.5
Q ss_pred CccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 14 GSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
=|-.=.|-||+.|++.|++..+. -|+-.|+-|..+.+.. +-+-+.++=+++|+..
T Consensus 28 PTMG~LH~GHlsLVr~A~~~~d~---VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~ 85 (285)
T COG0414 28 PTMGNLHEGHLSLVRRAKKENDV---VVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE 85 (285)
T ss_pred cCCcccchHHHHHHHHHhhcCCe---EEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc
Confidence 34455799999999999976653 2333345565554422 2234556666677654
No 87
>PRK13671 hypothetical protein; Provisional
Probab=32.67 E-value=36 Score=33.34 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHcCCCccCCCcHHHHHHHHH
Q psy9416 205 EISSTYLRRALRRGDSIKYLINDKVEQYIYQ 235 (344)
Q Consensus 205 ~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~ 235 (344)
-.|+|.||+.+..+..+..+||+...+.+.+
T Consensus 195 ~aSAtaIR~~l~~~~~~~~~~p~~~~~~l~~ 225 (298)
T PRK13671 195 YASATYLRKMIFENKDISKYSPMKFKKPPKS 225 (298)
T ss_pred cccHHHHHHHHhccchHHHhCCHHHHHHHHH
Confidence 4699999999977778999999998776653
No 88
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=31.13 E-value=2.5e+02 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.5
Q ss_pred eeEEEEEeccccccCcCCCCCCcchHHHHh
Q psy9416 134 IQVMFLCGVDVLESMAVPNLWSADDINHIA 163 (344)
Q Consensus 134 ~~l~fL~GsD~l~~~~~p~~W~~~~~e~il 163 (344)
.+..|+.|-|.+.-+. .|+.....+.+
T Consensus 83 ad~I~~~GGnq~~l~~---~l~~t~l~~~l 109 (250)
T TIGR02069 83 ATGIFFTGGDQLRITS---LLGDTPLLDRL 109 (250)
T ss_pred CCEEEEeCCCHHHHHH---HHcCCcHHHHH
Confidence 7889999999986665 67765444433
No 89
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.94 E-value=3.8e+02 Score=24.52 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=18.7
Q ss_pred eeEEEEEeccccccCcCCCCCCcchHHH
Q psy9416 134 IQVMFLCGVDVLESMAVPNLWSADDINH 161 (344)
Q Consensus 134 ~~l~fL~GsD~l~~~~~p~~W~~~~~e~ 161 (344)
.+..|+.|-|...-+. .|+.....+
T Consensus 84 ad~I~~~GG~~~~~~~---~l~~t~l~~ 108 (217)
T cd03145 84 ADGIFFTGGDQLRITS---ALGGTPLLD 108 (217)
T ss_pred CCEEEEeCCcHHHHHH---HHcCChHHH
Confidence 6889999999987776 677643333
No 90
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.56 E-value=2.7e+02 Score=28.47 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=30.2
Q ss_pred CCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHH
Q psy9416 13 CGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVR 69 (344)
Q Consensus 13 gGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~ 69 (344)
.=|=+-+|+||+-.+...++ +...|++|+ +++.....+--.+.-..+.|-.+.+
T Consensus 40 DPTa~slHlGhlv~l~kL~~-fQ~aGh~~i--vLigd~ta~IgDpsGk~e~r~~l~~ 93 (401)
T COG0162 40 DPTAPSLHLGHLVPLMKLRR-FQDAGHKPI--VLIGDATAMIGDPSGKSEERKLLTR 93 (401)
T ss_pred CCCCCccchhhHHHHHHHHH-HHHCCCeEE--EEecccceecCCCCCCHHHHhhccH
Confidence 33445589999988887776 555666554 2444333332122245556655544
No 91
>KOG0564|consensus
Probab=23.99 E-value=77 Score=33.37 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHhhcCCCeEEeccccccCCcccHHHHHHHHHHHHhh
Q psy9416 70 LALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQ 106 (344)
Q Consensus 70 lAi~d~~~i~V~d~E~~~~~~syT~dtL~~lk~~~~~ 106 (344)
+|+++.|-+--+.|+-..++..|.+|.++|++++|+.
T Consensus 110 LALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGD 146 (590)
T KOG0564|consen 110 LALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGD 146 (590)
T ss_pred hhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCC
Confidence 4566666555556888888899999999999999974
No 92
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=20.30 E-value=35 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhccCCCCCCCCCc
Q psy9416 237 GLYSVVESPHLEVSPILDLLSNLNNNFLPNGSPETH 272 (344)
Q Consensus 237 ~LY~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~ 272 (344)
.+-+.+++|||+ |+..||+.||+...-|+.
T Consensus 12 ailG~ESsGKSt------Lv~kLA~~fnt~~~wEY~ 41 (187)
T COG3172 12 AILGGESSGKST------LVNKLANIFNTTSAWEYG 41 (187)
T ss_pred eeecCcccChHH------HHHHHHHHhCCCchhHHH
Confidence 456889999999 999999999996665553
Done!