Query psy9416
Match_columns 344
No_of_seqs 196 out of 1359
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 18:37:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nup_A FKSG76; NAD biosynthesi 100.0 2.2E-48 7.6E-53 364.5 21.4 236 1-245 1-239 (252)
2 1kqn_A Nmnat, nicotinamide mon 100.0 4.5E-48 1.5E-52 368.0 16.9 241 5-245 6-260 (279)
3 3h05_A Uncharacterized protein 100.0 4.2E-45 1.4E-49 326.2 10.6 170 8-246 3-177 (177)
4 1yum_A 'probable nicotinate-nu 100.0 2.6E-42 8.9E-47 321.9 19.8 202 2-241 18-232 (242)
5 1kam_A Deamido-NAD(+), nicotin 100.0 1.3E-40 4.3E-45 299.3 20.2 190 2-240 2-193 (194)
6 2h29_A Probable nicotinate-nuc 100.0 4.6E-41 1.6E-45 301.0 16.6 183 9-240 4-188 (189)
7 1k4m_A NAMN adenylyltransferas 100.0 9.5E-41 3.3E-45 304.4 19.0 197 7-240 3-213 (213)
8 2qtr_A Nicotinate (nicotinamid 100.0 1.4E-39 4.8E-44 290.1 17.5 183 9-240 4-188 (189)
9 3nd5_A Phosphopantetheine aden 100.0 5.7E-31 1.9E-35 233.7 10.7 160 6-240 2-162 (171)
10 3f3m_A Phosphopantetheine aden 100.0 1.3E-29 4.4E-34 224.4 14.1 154 8-236 4-158 (168)
11 1o6b_A Phosphopantetheine aden 100.0 2.4E-29 8.1E-34 220.8 11.1 162 6-242 2-163 (169)
12 1vlh_A Phosphopantetheine aden 100.0 4E-29 1.4E-33 221.6 9.5 156 8-237 13-168 (173)
13 3nbk_A Phosphopantetheine aden 99.9 1.1E-27 3.7E-32 213.6 12.1 158 3-236 18-175 (177)
14 1qjc_A Phosphopantetheine aden 99.9 8.9E-28 3E-32 207.7 11.2 154 9-236 3-156 (158)
15 1od6_A PPAT, phosphopantethein 99.9 2.4E-27 8.1E-32 205.6 10.5 153 10-236 3-157 (160)
16 4f3r_A Phosphopantetheine aden 99.9 6.1E-26 2.1E-30 199.7 12.1 158 3-236 2-159 (162)
17 1ej2_A Nicotinamide mononucleo 99.9 7.1E-26 2.4E-30 201.4 8.2 157 9-240 5-164 (181)
18 3k9w_A Phosphopantetheine aden 99.9 2E-24 6.9E-29 194.2 13.2 158 4-236 20-177 (187)
19 1f9a_A Hypothetical protein MJ 99.9 2.5E-24 8.7E-29 189.2 9.6 152 9-240 2-158 (168)
20 2qjo_A Bifunctional NMN adenyl 99.9 1E-23 3.6E-28 201.9 10.8 163 2-238 3-173 (341)
21 1jhd_A Sulfate adenylyltransfe 99.9 2.9E-22 1E-26 198.5 15.3 171 12-236 197-390 (396)
22 3nv7_A Phosphopantetheine aden 99.9 3.1E-23 1.1E-27 181.5 5.8 155 6-235 2-156 (157)
23 1v47_A ATP sulfurylase; produc 99.9 2E-21 6.8E-26 189.8 13.0 173 6-236 156-348 (349)
24 2qjt_B Nicotinamide-nucleotide 99.8 2.5E-21 8.6E-26 186.5 10.7 164 2-236 3-176 (352)
25 1lw7_A Transcriptional regulat 99.7 5.1E-19 1.7E-23 172.3 3.8 179 9-267 4-198 (365)
26 2b7l_A Glycerol-3-phosphate cy 99.7 3.2E-17 1.1E-21 137.8 8.0 78 7-102 2-83 (132)
27 1coz_A Protein (glycerol-3-pho 99.7 5E-17 1.7E-21 136.0 6.8 65 7-80 2-70 (129)
28 3do8_A Phosphopantetheine aden 99.4 2.1E-13 7.2E-18 117.9 5.2 69 11-85 4-77 (148)
29 3glv_A Lipopolysaccharide core 99.3 3.5E-12 1.2E-16 109.0 7.9 67 6-80 2-71 (143)
30 3hl4_A Choline-phosphate cytid 99.1 1.6E-10 5.6E-15 106.7 8.9 68 6-80 76-147 (236)
31 3elb_A Ethanolamine-phosphate 98.9 2.2E-09 7.6E-14 104.3 9.5 70 1-79 2-75 (341)
32 1g8f_A Sulfate adenylyltransfe 98.9 8.8E-09 3E-13 105.1 12.4 194 7-264 190-420 (511)
33 2x0k_A Riboflavin biosynthesis 98.9 1.5E-08 5E-13 98.5 13.1 74 10-86 18-97 (338)
34 1r6x_A ATP:sulfate adenylyltra 98.9 1.6E-08 5.4E-13 100.0 13.4 171 7-235 189-385 (395)
35 3gmi_A UPF0348 protein MJ0951; 98.8 3.1E-08 1E-12 96.9 13.5 184 6-236 52-259 (357)
36 1mrz_A Riboflavin kinase/FMN a 98.7 4.7E-08 1.6E-12 93.2 9.6 67 12-83 4-74 (293)
37 3elb_A Ethanolamine-phosphate 98.7 2.9E-08 9.8E-13 96.5 7.6 70 8-81 199-272 (341)
38 3op1_A Macrolide-efflux protei 98.3 4.8E-06 1.7E-10 79.8 13.4 72 10-84 23-102 (308)
39 2gks_A Bifunctional SAT/APS ki 98.0 3.8E-05 1.3E-09 78.8 12.8 191 6-248 164-387 (546)
40 1m8p_A Sulfate adenylyltransfe 97.8 0.00013 4.6E-09 75.2 12.5 192 6-248 191-411 (573)
41 1x6v_B Bifunctional 3'-phospho 97.2 0.0081 2.8E-07 62.6 16.6 181 6-235 413-616 (630)
42 3cr8_A Sulfate adenylyltranfer 97.2 0.00086 2.9E-08 68.9 9.1 204 6-265 164-395 (552)
43 2ejc_A Pantoate--beta-alanine 95.3 0.02 7E-07 53.9 5.8 60 7-70 22-84 (280)
44 3ag6_A Pantothenate synthetase 84.5 1.7 5.7E-05 40.9 6.5 50 19-71 34-86 (283)
45 1v8f_A Pantoate-beta-alanine l 83.4 2.2 7.7E-05 39.9 6.8 49 19-71 28-80 (276)
46 3cov_A Pantothenate synthetase 78.3 2.7 9.3E-05 39.8 5.5 49 19-71 44-97 (301)
47 3inn_A Pantothenate synthetase 73.4 7.6 0.00026 36.9 7.2 50 19-71 54-106 (314)
48 3uk2_A Pantothenate synthetase 68.6 5.6 0.00019 37.3 5.0 59 9-71 24-85 (283)
49 3q12_A Pantoate--beta-alanine 54.2 12 0.00042 35.1 4.5 50 19-71 36-88 (287)
50 3en0_A Cyanophycinase; serine 48.5 31 0.0011 32.1 6.4 112 7-164 27-138 (291)
51 1f0k_A MURG, UDP-N-acetylgluco 46.1 23 0.00079 32.1 5.1 37 1-42 1-38 (364)
52 3mxt_A Pantothenate synthetase 44.8 24 0.00081 33.1 4.8 49 19-71 36-87 (285)
53 3n8h_A Pantothenate synthetase 44.4 18 0.0006 33.6 3.9 54 15-71 31-87 (264)
No 1
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=100.00 E-value=2.2e-48 Score=364.53 Aligned_cols=236 Identities=44% Similarity=0.755 Sum_probs=187.0
Q ss_pred CCcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeE
Q psy9416 1 MSSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIK 79 (344)
Q Consensus 1 ~~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~ 79 (344)
|+++.+ +++||||||||||+||+.|++.|++.++.++. .||+++++|+..+++|+.+++.++|++||++|+++++++.
T Consensus 1 m~~~~~-~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~ 79 (252)
T 1nup_A 1 MKSRIP-VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIR 79 (252)
T ss_dssp --CCEE-EEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEE
T ss_pred CCCCCc-eEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceE
Confidence 444444 45569999999999999999999999988754 6665689999999988888999999999999999999999
Q ss_pred EeccccccCCcccHHHHHHHHHHHHhhh--hhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcc
Q psy9416 80 LSEWEAQQSEWTRTRVSLDHHEDELNQQ--LDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSAD 157 (344)
Q Consensus 80 V~d~E~~~~~~syT~dtL~~lk~~~~~~--~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~ 157 (344)
|++||+.+.+++||++||++++++|+.. +++.| |..+.+.+ .+..+.+++||||+|++.+|.+|++|+++
T Consensus 80 v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~-~~~~~~~~-------~p~~~~~~~fiiGaD~l~~l~~p~~W~~~ 151 (252)
T 1nup_A 80 VDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGP-DHGKALFS-------TPAAVPELKLLCGADVLKTFQTPNLWKDA 151 (252)
T ss_dssp ECCHHHHSSSCCCHHHHHHHHHHHHC----------------------------CCCEEEEEEEHHHHHHTTSTTTSCHH
T ss_pred eehHHhcCCCCCCHHHHHHHHHHHHhhcccccccc-cccccccc-------CCCCCceEEEEEecchHhHCCCcCccCcc
Confidence 9999999999999999999999998311 00001 00000000 00112799999999999999988899986
Q ss_pred hHHHHhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcC
Q psy9416 158 DINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHG 237 (344)
Q Consensus 158 ~~e~il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~ 237 (344)
++++|++.++|+|++|+|.+..++..+.+.+..+..+|++++.+...+||||.||++++.|+++++|||+.|++||++|+
T Consensus 152 ~~~~i~~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~ 231 (252)
T 1nup_A 152 HIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHG 231 (252)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHCHHHHHTGGGEEEECCCSCCCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHTT
T ss_pred hHHHHHhhCcEEEEECCCCChHHhhhhHHHHHhcCCCEEEEcCCCCCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcC
Confidence 68999999999999999998665444344555566789999776458999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy9416 238 LYSVVESP 245 (344)
Q Consensus 238 LY~~~~~~ 245 (344)
||+.+...
T Consensus 232 LY~~~~~~ 239 (252)
T 1nup_A 232 LYTKGSTW 239 (252)
T ss_dssp CSCC----
T ss_pred CcCCCccC
Confidence 99876554
No 2
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=100.00 E-value=4.5e-48 Score=367.95 Aligned_cols=241 Identities=45% Similarity=0.778 Sum_probs=189.7
Q ss_pred cCceEEEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 5 AIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 5 ~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
++++++||||||||||+||+.|++.|++.++.++. +|+.++|+|+..+++|+.+++.++|++|+++|+++.+++.|++|
T Consensus 6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K~~l~s~~~R~~ml~~ai~~~~~~~v~~~ 85 (279)
T 1kqn_A 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTW 85 (279)
T ss_dssp CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCCTTCCCHHHHHHHHHHHTTTCSSEEECCT
T ss_pred CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccccCCCCHHHHHHHHHHHhcCCCcEEEecc
Confidence 45567779999999999999999999999988753 57666899998888887789999999999999999999999999
Q ss_pred ccccCCcccHHHHHHHHHHHHhhhhh---------ccccccccccc--ccccCCCCCC-C-CceeEEEEEeccccccCcC
Q psy9416 84 EAQQSEWTRTRVSLDHHEDELNQQLD---------AQCTNKTDVKR--ARHDQHNGSP-R-RKIQVMFLCGVDVLESMAV 150 (344)
Q Consensus 84 E~~~~~~syT~dtL~~lk~~~~~~~~---------~~P~~~~~~p~--~~~~~~~~~~-~-~~~~l~fL~GsD~l~~~~~ 150 (344)
|+.+.+++||++||++|+++++.... ..|.-...+.. .....++..+ . ...+++||||+|++.+|.+
T Consensus 86 E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~GaD~l~~~~~ 165 (279)
T 1kqn_A 86 ESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAV 165 (279)
T ss_dssp GGGCSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEEHHHHHHTTS
T ss_pred ccccCCCCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEehhhHhhCcC
Confidence 99999999999999999999831000 00000000000 0000000000 1 1278999999999999998
Q ss_pred CCCCCcchHHHHhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHH
Q psy9416 151 PNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVE 230 (344)
Q Consensus 151 p~~W~~~~~e~il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~ 230 (344)
|+.|+++++++|++.++|||++|+|++..+.+...+.|.++..+|++++.+...+||||+||+++++|+++++|||+.|+
T Consensus 166 p~~W~~~~~e~il~~~~lvv~~R~g~~~~~~~~~~~~l~~~~~~i~~v~~~~~~~ISST~IR~~l~~g~si~~lvP~~V~ 245 (279)
T 1kqn_A 166 PNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQ 245 (279)
T ss_dssp TTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHHTCHHHHHTGGGEEEEECCSCCCCCHHHHHHHHHTTCCCBTTBCHHHH
T ss_pred ccccCcchHHHHHhhCcEEEEeCCCCChHhhhhhHHHHhhcCCcEEEECCCCCCccCHHHHHHHHHcCCChhhcCCHHHH
Confidence 88999866899999999999999998765444334566667789999987645899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCC
Q psy9416 231 QYIYQHGLYSVVESP 245 (344)
Q Consensus 231 ~YI~~~~LY~~~~~~ 245 (344)
+||++|+||+.++..
T Consensus 246 ~YI~~~~LY~~~~~~ 260 (279)
T 1kqn_A 246 EYIEKHNLYSSESED 260 (279)
T ss_dssp HHHHHHTCCSHHHHT
T ss_pred HHHHHcCCcCCCccc
Confidence 999999999865543
No 3
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=4.2e-45 Score=326.20 Aligned_cols=170 Identities=22% Similarity=0.305 Sum_probs=136.0
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCC--CeEEecccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDST--WIKLSEWEA 85 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~--~i~V~d~E~ 85 (344)
.++||||||||||+||+.+++ |++.+ + +|+ ++|+++++.|++.+++++|++|+++|+++++ ++.|++||.
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-a~~~~--d--~v~---~~p~~~~~~k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~ 74 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-SLSHF--D--LVL---LEPSIAHAWGKNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQ 74 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-TCTTS--S--EEE---EEECC-------CCCHHHHHHHHHHHHHHHCCTTEEECCHHH
T ss_pred EEEEEEeccchhhHHHHHHHH-HHHHC--C--EEE---EEECCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEehhh
Confidence 456699999999999999998 76655 5 885 7888877777788999999999999999975 899999998
Q ss_pred c--cCC-cccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 86 Q--QSE-WTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 86 ~--~~~-~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
. +++ ++||++||++|++.+ | +.+++||||+|.+.+|. +|++ +++|
T Consensus 75 ~l~~~~~~syT~dTl~~l~~~~-------p--------------------~~~~~~iiG~D~l~~l~---~W~~--~~~l 122 (177)
T 3h05_A 75 ALYQPGQSVTTYALLEKIQEIY-------P--------------------TADITFVIGPDNFFKFA---KFYK--AEEI 122 (177)
T ss_dssp HHC----CCCHHHHHHHHHHHS-------T--------------------TSEEEEEECHHHHHTGG---GSTT--HHHH
T ss_pred hcccCCCCcchHHHHHHHHHHh-------c--------------------CCCeEEEEecchhhhcc---cchh--HHHH
Confidence 7 666 999999999999998 4 48999999999999998 7998 8999
Q ss_pred hhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCCCC
Q psy9416 163 AGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVV 242 (344)
Q Consensus 163 l~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~~~ 242 (344)
++.++++|++| ..+||||+||+++++|+++++|||+.|.+||.+|+||+.+
T Consensus 123 ~~~~~~vv~~r-----------------------------~~~iSST~IR~~i~~g~~~~~lvp~~V~~yI~~~~LY~~~ 173 (177)
T 3h05_A 123 TERWTVMACPE-----------------------------KVKIRSTDIRNALIEGKDISTYTTPTVSELLLNEGLYRET 173 (177)
T ss_dssp HHHSEEEECCC-----------------------------SSCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHC-------
T ss_pred HHhCCEEEEcC-----------------------------CCCCcHHHHHHHHHcCCChhHhCCHHHHHHHHHcCCCCCc
Confidence 99999999875 2689999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9416 243 ESPH 246 (344)
Q Consensus 243 ~~~k 246 (344)
++||
T Consensus 174 ~~~~ 177 (177)
T 3h05_A 174 LSGK 177 (177)
T ss_dssp ----
T ss_pred ccCC
Confidence 8886
No 4
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=100.00 E-value=2.6e-42 Score=321.91 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=169.4
Q ss_pred CcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC-CCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK-DLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 2 ~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~-~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
++++++.+++|||||||+|+||+.|++.|++.++.+ +|+ ++|+.++|.|. ..++.++|++|+++|+++.+++.|
T Consensus 18 ~~~~~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld--~v~---v~~~~~~p~K~~~~~~~~~R~~ml~~a~~~~~~v~v 92 (242)
T 1yum_A 18 GSHMGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALD--ELR---LLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTV 92 (242)
T ss_dssp ----CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCS--EEE---EEECCCCGGGSCTTCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCCCceEEEEEeeCcHhhHHHHHHHHHHHHHcCCC--EEE---EEEcCCCCCCCCCCCCHHHHHHHHHHHhcCCCeEEE
Confidence 345566667799999999999999999999999777 885 78888877774 578999999999999999999999
Q ss_pred eccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHH
Q psy9416 81 SEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDIN 160 (344)
Q Consensus 81 ~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e 160 (344)
++||+.+++++||++||++++++|+ | +.+++||+|+|++.+|. +|++ ++
T Consensus 93 ~~~e~~~~~~sytvdtl~~l~~~~~------p--------------------~~~~~fI~G~D~l~~l~---~W~~--~~ 141 (242)
T 1yum_A 93 DPRELQRDKPSYTIDTLESVRAELA------A--------------------DDQLFMLIGWDAFCGLP---TWHR--WE 141 (242)
T ss_dssp CCGGGGSSSSCCHHHHHHHHHHHSC------T--------------------TCEEEEEEEHHHHTTGG---GSTT--GG
T ss_pred eeeeecCCCCCCHHHHHHHHHHHhC------C--------------------CCcEEEEEehhHhhhhh---hhcC--HH
Confidence 9999999999999999999999983 3 47999999999999998 7998 89
Q ss_pred HHhhcCCEEEEcCCCCCchhhhhh-hhhhh-----------hcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHH
Q psy9416 161 HIAGHHGIVVITRGDTNPAKFIYQ-HDILS-----------KHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDK 228 (344)
Q Consensus 161 ~il~~~~~vVv~R~g~~~~~~~~~-~~~L~-----------~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~ 228 (344)
+|++.++++|++|+ +...+...+ ...+. ....+|.+++.+ ..+||||.||++++.|++|++|||+.
T Consensus 142 ~i~~~~~~vv~~R~-~~~~~~~~e~~~~~~~~~~~~~~~L~~~~~~i~~~~~~-~~~ISST~IR~~i~~g~~i~~lVP~~ 219 (242)
T 1yum_A 142 ALLDHCHIVVLQRP-DADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQT-PLAVSATQIRALLGAGRSVRFLVPDA 219 (242)
T ss_dssp GSTTTCEEEEEECS-SSCCCCCGGGHHHHHHHBCSCGGGCCSSSCCEEEEECC-CCSCCHHHHHHHHHTTCCCBTTBCHH
T ss_pred HHHhhCcEEEEECC-CchhhhhHHHHHHHHHhhccchhhhccCCCeEEEecCC-CCcCcHHHHHHHHHcCCChhHcCCHH
Confidence 99999999999999 332211100 00011 123479999887 47999999999999999999999999
Q ss_pred HHHHHHHcCCCCC
Q psy9416 229 VEQYIYQHGLYSV 241 (344)
Q Consensus 229 V~~YI~~~~LY~~ 241 (344)
|++||++++||+.
T Consensus 220 V~~yI~~~~LY~~ 232 (242)
T 1yum_A 220 VLNYIEAHHLYRA 232 (242)
T ss_dssp HHHHHHHTTTTCC
T ss_pred HHHHHHHhCCcCC
Confidence 9999999999985
No 5
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=100.00 E-value=1.3e-40 Score=299.31 Aligned_cols=190 Identities=23% Similarity=0.331 Sum_probs=161.2
Q ss_pred CcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHHhhcCCCeE
Q psy9416 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLALEDSTWIK 79 (344)
Q Consensus 2 ~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~ 79 (344)
|.++|+.++++||||||+|+||+.|++.|++.++.+ +|+ +.|+.+++.| +..++.++|++|+++++++.+++.
T Consensus 2 m~~~m~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d--~v~---~~~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~v~ 76 (194)
T 1kam_A 2 MPGGSKKIGIFGGTFDPPHNGHLLMANEVLYQAGLD--EIW---FMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFK 76 (194)
T ss_dssp ----CCEEEEEEECCSSCCHHHHHHHHHHHHHTTCS--EEE---EEECCCC---------CHHHHHHHHHHHHTTCTTEE
T ss_pred CCCCCcEEEEEEeccccccHHHHHHHHHHHHHhCCC--EEE---EEECCCCCCcCCcCCCCHHHHHHHHHHHHcCCCCeE
Confidence 456565556699999999999999999999998777 775 7787777777 457899999999999999999999
Q ss_pred EeccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchH
Q psy9416 80 LSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDI 159 (344)
Q Consensus 80 V~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~ 159 (344)
|+++|.++++++||++||++++..| | +.+++||+|.|.+.+|. .|++ +
T Consensus 77 v~~~e~~~~~~~~t~~~l~~l~~~~-------p--------------------~~~~~~v~G~D~~~~~~---~W~~--~ 124 (194)
T 1kam_A 77 LELVEMEREGPSYTFDTVSLLKQRY-------P--------------------NDQLFFIIGADMIEYLP---KWYK--L 124 (194)
T ss_dssp ECCGGGSTTCCCSHHHHHHHHHHHS-------T--------------------TSEEEEEEETTTTTTCC---CCHH--H
T ss_pred EeHHHhcCCCCCChHHHHHHHHHHC-------C--------------------CCcEEEEEecchhhhhc---cccC--H
Confidence 9999999999999999999999998 4 48999999999999997 8998 8
Q ss_pred HHHhhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCC
Q psy9416 160 NHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239 (344)
Q Consensus 160 e~il~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY 239 (344)
++|++.++++|++|+|.... + +.++.+++.+ ..+||||.||++++.|++++++||+.|.+||++|+||
T Consensus 125 e~i~~~~~~~v~~R~g~~~~--------l---~~~i~~~~~~-~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY 192 (194)
T 1kam_A 125 DELLNLIQFIGVKRPGFHVE--------T---PYPLLFADVP-EFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLY 192 (194)
T ss_dssp HHHHHHSEEEEEECSSCCCC--------C---SSCCEEEECC-CBCCCHHHHHHHHHHTCCCTTTSCHHHHHHHHHTTCS
T ss_pred HHHHHhCcEEEEECCCcchh--------c---CCCEEEeCCC-CCCcCHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCc
Confidence 99999999999999987521 1 2477888877 4799999999999999999999999999999999999
Q ss_pred C
Q psy9416 240 S 240 (344)
Q Consensus 240 ~ 240 (344)
+
T Consensus 193 ~ 193 (194)
T 1kam_A 193 E 193 (194)
T ss_dssp C
T ss_pred c
Confidence 7
No 6
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=100.00 E-value=4.6e-41 Score=301.04 Aligned_cols=183 Identities=21% Similarity=0.354 Sum_probs=164.3
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
++++||||||+|+||+.|++.|++.++.+ +|+ +.|+..++.| ...++.++|++|+++|+++.+++.|+++|+.
T Consensus 4 ~~v~~GsFdp~H~GH~~l~~~a~~~~~~d--~v~---~~~~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~ 78 (189)
T 2h29_A 4 IVLYGGQFNPIHTAHMIVASEVFHELQPD--EFY---FLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIK 78 (189)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCS--EEE---EEECSBCTTSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHH
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHcCCC--EEE---EEECCCCCCCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhc
Confidence 45589999999999999999999998777 885 6888888877 4568999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
+++++||++||+++++.+ | +.+++||+|.|++.+|. .|++ ++++++.+
T Consensus 79 ~~~~syt~dtl~~l~~~~-------p--------------------~~~~~~i~G~D~~~~~~---~W~~--~~~i~~~~ 126 (189)
T 2h29_A 79 RGGQSYTYDTIKAFKEQH-------K--------------------DSELYFVIGTDQYNQLE---KWYQ--IEYLKEMV 126 (189)
T ss_dssp HCSBCCHHHHHHHHHHHS-------T--------------------TEEEEEEEEHHHHTTGG---GSTT--HHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHC-------C--------------------CCcEEEEEecchhhhhc---cccC--HHHHHhhC
Confidence 999999999999999988 4 47899999999999997 7998 79999999
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
+++|++|++.+.. ...+|.+++.+ ..+||||.||+.++.|++++++||+.|.+||++|+||+
T Consensus 127 ~~~v~~R~~~~~~-----------~~~~i~~~~~~-~~~ISST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 188 (189)
T 2h29_A 127 TFVVVNRDKNSQN-----------VENAMIAIQIP-RVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYE 188 (189)
T ss_dssp EEEEECCSSSCCC-----------CCTTSEEECCC-CBCCCHHHHHHHHHTTCCCBTTBCHHHHHHHHHHTTTC
T ss_pred cEEEEECCCCccc-----------cCCcEEEEcCC-CCccCHHHHHHHHHcCCChhhcCCHHHHHHHHHhCCcc
Confidence 9999999987532 12467788777 48999999999999999999999999999999999996
No 7
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=100.00 E-value=9.5e-41 Score=304.44 Aligned_cols=197 Identities=23% Similarity=0.291 Sum_probs=168.4
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC-CCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK-DLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~-~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
+++++|||||||+|+||+.|++.|++.++.+ +|+ +.|+.++++|. ..++.++|++|+++++++.+++.|+++|.
T Consensus 3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d--~v~---~~~~~~~~~k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~ 77 (213)
T 1k4m_A 3 SLQALFGGTFDPVHYGHLKPVETLANLIGLT--RVT---IIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDEREL 77 (213)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTCS--CEE---EEECSSCTTSCCCSSCHHHHHHHHHHHHTTCTTEEECCHHH
T ss_pred eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCC--EEE---EEECCCCCCCCCCCCCHHHHHHHHHHHhccCCCEEEeHHHh
Confidence 3525699999999999999999999999777 775 68887777774 57899999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
++++++||++|++++++.++ | +.+++|++|.|.+.+|. +|++ +++|++.
T Consensus 78 ~~~~~s~t~~~l~~l~~~~~------~--------------------~~~~~~i~G~D~~~~l~---~W~~--~~~i~~~ 126 (213)
T 1k4m_A 78 KRNAPSYTAQTLKEWRQEQG------P--------------------DVPLAFIIGQDSLLTFP---TWYE--YETILDN 126 (213)
T ss_dssp HCSSCCCHHHHHHHHHHHHC------T--------------------TSCEEEEEEHHHHHHGG---GSTT--HHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHhC------C--------------------CCcEEEEEehhhhhhhh---ccCC--HHHHHhh
Confidence 99999999999999999873 3 47899999999999998 7998 8999999
Q ss_pred CCEEEEcCCCCCchhhhhh------------hhhhh-hcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHH
Q psy9416 166 HGIVVITRGDTNPAKFIYQ------------HDILS-KHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQY 232 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~~~------------~~~L~-~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~Y 232 (344)
++++|++|+|.+......+ .+.|. ....+|.+++.+ ..+||||.||++++.|++|++|||+.|.+|
T Consensus 127 ~~~vv~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~iSST~IR~~i~~g~~i~~lvP~~V~~y 205 (213)
T 1k4m_A 127 AHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETP-WFNISATIIRERLQNGESCEDLLPEPVLTY 205 (213)
T ss_dssp CEEEEECCTTCCSSCSSHHHHHHHHHHBCSCTTHHHHSSSCCEEEECCC-CCCCCHHHHHHHHHTTCCCTTTSCHHHHHH
T ss_pred CcEEEEECCCCchhhhhhHHHHHHhhhhcchhhhhhhccCCeEEEEeCC-cccCCHHHHHHHHHcCCCchhcCCHHHHHH
Confidence 9999999999863221000 00111 123478888877 689999999999999999999999999999
Q ss_pred HHHcCCCC
Q psy9416 233 IYQHGLYS 240 (344)
Q Consensus 233 I~~~~LY~ 240 (344)
|++|+||+
T Consensus 206 I~~~~LY~ 213 (213)
T 1k4m_A 206 INQQGLYR 213 (213)
T ss_dssp HHHHTTTC
T ss_pred HHHcCCCC
Confidence 99999995
No 8
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=100.00 E-value=1.4e-39 Score=290.05 Aligned_cols=183 Identities=23% Similarity=0.299 Sum_probs=162.2
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC--CCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK--KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
+++|||||||+|+||+.|++.|++.++.+ +|+ ++|+..+++| +.+++.++|++|+++++++.+++.|+++|.+
T Consensus 4 i~i~~GsFDPvH~GH~~li~~a~~~~~~d--~v~---~~~~~~~~~k~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~ 78 (189)
T 2qtr_A 4 IGIIGGTFDPPHYGHLLIANEVYHALNLE--EVW---FLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELS 78 (189)
T ss_dssp EEEEEECCSSCCHHHHC-CHHHHHHTTCS--EEE---EEECSSCTTCTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGG
T ss_pred EEEEecCcccccHHHHHHHHHHHHHcCCC--EEE---EEECCCCCCccCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhc
Confidence 45699999999999999999999998777 885 7788777877 4578999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
+++++||++||++++.++ | +.+++|++|.|.+..+. .|++ +++|++.+
T Consensus 79 ~~~~~~~~~~l~~l~~~~-------p--------------------~~~~~~v~G~D~~~~~~---~w~~--~~~l~~~~ 126 (189)
T 2qtr_A 79 RKGPSYTYDTMLQLTKKY-------P--------------------DVQFHFIIGGDMVEYLP---KWYN--IEALLDLV 126 (189)
T ss_dssp SCSCCCHHHHHHHHHHHC-------T--------------------TCEEEEEEEHHHHHHGG---GSTT--HHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHC-------C--------------------CCCEEEEEehhhhhhhh---ccCC--HHHHHHhC
Confidence 999999999999999988 4 48999999999999997 7997 89999999
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
+++|++|+|...+ ...++.+++.+ ..+||||.||++++.|++++++||+.|.+||++|+||+
T Consensus 127 ~~~v~~r~~~~~~-----------~~~~v~~~~~~-~~~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY~ 188 (189)
T 2qtr_A 127 TFVGVARPGYKLR-----------TPYPITTVEIP-EFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188 (189)
T ss_dssp EEEEECCTTCCCC-----------CSSCCEEECCC-CCCCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGGG
T ss_pred CEEEEECCCCCcc-----------CCceEEEEcCC-CCccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcC
Confidence 9999999987532 01266777666 46999999999999999999999999999999999996
No 9
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.97 E-value=5.7e-31 Score=233.74 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=117.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEE-eccc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKL-SEWE 84 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V-~d~E 84 (344)
||++ +|||||||+|+||+.++++|++.+ + +|+ +.|. .++.|++.++.++|++|+++|+++.+++.| +++|
T Consensus 2 m~i~-i~~GsFDPiH~GHl~i~~~a~~~~--D--~vi---v~v~-~~~~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e 72 (171)
T 3nd5_A 2 RKIA-LFPGSFDPMTNGHLNLIERSAKLF--D--EVI---IGVF-INTSKQTLFTPEEKKYLIEEATKEMPNVRVIMQET 72 (171)
T ss_dssp CCEE-EEEECCTTCCHHHHHHHHHHHTTC--S--EEE---EEEE-C------CCCHHHHHHHHHHHHTTCTTEEEEEECS
T ss_pred CeEE-EEEEEccccCHHHHHHHHHHHHHC--C--CeE---EEEe-cCCCCCCCCCHHHHHHHHHHHHccCCCEEEeeCCC
Confidence 4555 599999999999999999999987 4 775 5554 346777889999999999999999999999 9997
Q ss_pred cccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhh
Q psy9416 85 AQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAG 164 (344)
Q Consensus 85 ~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~ 164 (344)
+||++|+++++ .+ +|++|.|.+.++ +..++
T Consensus 73 ------~~tvd~~~~l~--------------------------------~~-~~i~G~~~~~d~-----------~~e~~ 102 (171)
T 3nd5_A 73 ------QLTVESAKSLG--------------------------------AN-FLIRGIRNVKDY-----------EYEKD 102 (171)
T ss_dssp ------SCHHHHHHHHT--------------------------------CC-EEEEEECSHHHH-----------HHHHH
T ss_pred ------CcHHHHHHHCC--------------------------------CC-EEEECCCchhhh-----------HHHHH
Confidence 58999987653 22 899998865433 33333
Q ss_pred cCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 165 HHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 165 ~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
.+.+ +|. +......|+++..+...+||||.||+.++.|.++++|||+.|.+||++++||-
T Consensus 103 la~~---nr~-------------l~~~~etv~l~~~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~~~~y~ 162 (171)
T 3nd5_A 103 IAKM---NQH-------------LAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQKKNDW 162 (171)
T ss_dssp HHHH---HHH-------------HCTTSEEEEEECCGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHC----
T ss_pred HHHH---hhh-------------hcCCccEEEEeCCccccccchHHHHHHHHcCCChhHhCCHHHHHHHHHhhccc
Confidence 3332 221 11112467777776555999999999999999999999999999999999995
No 10
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.96 E-value=1.3e-29 Score=224.39 Aligned_cols=154 Identities=14% Similarity=0.234 Sum_probs=117.3
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
.+++|||||||+|+||+.++++|++.+ + +|+ +.|+. +|+|+..++.++|++|+++|+++.+++.|++||
T Consensus 4 ki~i~~GsFDPiH~GHl~i~~~a~~~~--d--~vi---v~v~~-~p~K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e--- 72 (168)
T 3f3m_A 4 TIAVIPGSFDPITYGHLDIIERSTDRF--D--EIH---VCVLK-NSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFS--- 72 (168)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHGGGS--S--EEE---EEECC------CCSCHHHHHHHHHHHTTTCTTEEEEECC---
T ss_pred eEEEEEEEcCcCCHHHHHHHHHHHHhC--C--EEE---EEEcC-CCCCCCCCCHHHHHHhHHHHhcCCCCEEEEEcC---
Confidence 355699999999999999999999987 4 775 66664 457778899999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHH-HHhhcC
Q psy9416 88 SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDIN-HIAGHH 166 (344)
Q Consensus 88 ~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e-~il~~~ 166 (344)
.||++|+++++ .+ +|++|.|++.++. +| ++...
T Consensus 73 ---~~tvd~~~~l~--------------------------------~~-~~I~G~d~~~d~~---------~e~~~a~~- 106 (168)
T 3f3m_A 73 ---GLLVDYCEQVG--------------------------------AK-TIIRGLRAVSDFE---------YELRLTSM- 106 (168)
T ss_dssp ---SCHHHHHHHHT--------------------------------CC-EEEEEECTTCCHH---------HHHHHHHH-
T ss_pred ---CCHHHHHHHcC--------------------------------CC-EEEEcCCchhhhh---------HHHHHhHH-
Confidence 39999998653 22 7999999875542 23 22221
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
.|. +......|++++.|....||||.||+.++.|+++++|||+.|.+||+++
T Consensus 107 -----~r~-------------l~~~~e~v~l~~~p~~~~ISST~IRe~~~~g~~i~~lvP~~V~~~i~~~ 158 (168)
T 3f3m_A 107 -----NKK-------------LNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKK 158 (168)
T ss_dssp -----HHH-------------HCTTSEEEEEECCTTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred -----hHh-------------hCCCCcEEEEeCCcccccccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 121 1111246777777743349999999999999999999999999999986
No 11
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.96 E-value=2.4e-29 Score=220.78 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=121.1
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
+++ ++|||||||+|+||+.+++.|++.++ +|+ ++|+.+ |.|+.+++.++|++|+++++++.+++.++++|
T Consensus 2 ~~i-~i~~GsFDpvH~GH~~li~~a~~~~d----~v~---v~~~~~-p~k~~l~~~~~R~~ml~~a~~~~~~v~v~~~e- 71 (169)
T 1o6b_A 2 ASI-AVCPGSFDPVTYGHLDIIKRGAHIFE----QVY---VCVLNN-SSKKPLFSVEERCELLREVTKDIPNITVETSQ- 71 (169)
T ss_dssp CCE-EEEEECCTTCCHHHHHHHHHHHHHSS----EEE---EEECCC-CSSCCSSCHHHHHHHHHHHHTTCTTEEEEECS-
T ss_pred CcE-EEEEEeeCCCCHHHHHHHHHHHHhCC----EEE---EEECCC-CccCCCCCHHHHHHHHHHHHhcCCCEEEcccc-
Confidence 444 45999999999999999999999874 664 566644 56667889999999999999999999999998
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
+||++++++++ .+ +|++|.|.+..+. ....
T Consensus 72 -----~~~~~~l~~l~--------------------------------~~-~~i~G~d~~~~~~-----------~~~~- 101 (169)
T 1o6b_A 72 -----GLLIDYARRKN--------------------------------AK-AILRGLRAVSDFE-----------YEMQ- 101 (169)
T ss_dssp -----SCHHHHHHHTT--------------------------------CS-EEEEEECSGGGHH-----------HHHH-
T ss_pred -----hHHHHHHHHcC--------------------------------CC-EEEEcCccccchH-----------HHHH-
Confidence 58988875432 22 7999999764432 1111
Q ss_pred CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCCCC
Q psy9416 166 HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVV 242 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~~~ 242 (344)
++++.|.+.. . -..+.++..+....||||.||++++.|++++++||++|.+||.+++||+.+
T Consensus 102 --~~~~~r~~~~------------~-~~~i~~~~~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~yi~~~~ly~~~ 163 (169)
T 1o6b_A 102 --GTSVNRVLDE------------S-IETFFMMANNQYSFLSSSIVKEVARYDGSVSEFVPPEVELALQQKFRQGGS 163 (169)
T ss_dssp --HHHHHHHHCT------------T-SEEEEEECCSTTTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred --HHHHhccccC------------C-CCEEEEECCCCCCcCcHHHHHHHHHcCCChhHHCCHHHHHHHHHhhCcCCC
Confidence 1122222110 0 123444544323579999999999999999999999999999999999764
No 12
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.95 E-value=4e-29 Score=221.55 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=122.8
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
.+++|||||||+|+||+.+++.|++.+ + +|+ +.|+.+++ |++.++.++|++|+++|+++.+++.|+++|
T Consensus 13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~--D--~vi---v~v~~~~~-kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e--- 81 (173)
T 1vlh_A 13 MKAVYPGSFDPITLGHVDIIKRALSIF--D--ELV---VLVTENPR-KKCMFTLEERKKLIEEVLSDLDGVKVDVHH--- 81 (173)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTC--S--EEE---EEEECCTT-CCCSSCHHHHHHHHHHHTTTCTTEEEEEEC---
T ss_pred eEEEEEEEECcCcHHHHHHHHHHHHHC--C--EEE---EEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCCEEEecCc---
Confidence 356799999999999999999999987 4 775 66776644 457799999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCC
Q psy9416 88 SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHG 167 (344)
Q Consensus 88 ~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~ 167 (344)
+ ||++|+++++ .+ +|+.|. . .|++ ++.++ +
T Consensus 82 -~--~tvd~l~~l~--------------------------------~~-~~i~gl------~---~w~d--~~~~~---~ 111 (173)
T 1vlh_A 82 -G--LLVDYLKKHG--------------------------------IK-VLVRGL------R---AVTD--YEYEL---Q 111 (173)
T ss_dssp -S--CHHHHHHHHT--------------------------------CC-EEEEEE------C---TTSC--HHHHH---H
T ss_pred -c--hHHHHHHHhC--------------------------------CC-eEEeCC------C---cccc--hhhcc---c
Confidence 2 9999998654 22 355443 3 6887 67765 4
Q ss_pred EEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcC
Q psy9416 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHG 237 (344)
Q Consensus 168 ~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~ 237 (344)
++++.|++... ...++++..+....||||.||+.++.|.++++|||+.|.+||.++.
T Consensus 112 ~~~~~r~~~~~-------------~~~i~l~~~~~~~~iSST~IR~~i~~g~~i~~lvP~~V~~yI~~~~ 168 (173)
T 1vlh_A 112 MALANKKLYSD-------------LETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKL 168 (173)
T ss_dssp HHHHHHHHSTT-------------CEEEEEECCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHHT
T ss_pred hhhcCCCCCCC-------------CcEEEEeCCCCCCceeHHHHHHHHHcCCChhHcCCHHHHHHHHHHH
Confidence 56667764310 1356666665434599999999999999999999999999999974
No 13
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.95 E-value=1.1e-27 Score=213.58 Aligned_cols=158 Identities=12% Similarity=0.151 Sum_probs=120.9
Q ss_pred cccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 3 SAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 3 ~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
..+||+++ |||||||+|+||+.++++|++.+ + +|+ +.|+.+ ++|++.++.++|++|+++++++.+++.|++
T Consensus 18 ~~~mki~i-~~GsFDPiH~GHl~ii~~A~~~~--D--~Vi---v~v~~n-p~K~~~~s~eeR~~mv~~a~~~~~~v~V~~ 88 (177)
T 3nbk_A 18 GSHMTGAV-CPGSFDPVTLGHVDIFERAAAQF--D--EVV---VAILVN-PAKTGMFDLDERIAMVKESTTHLPNLRVQV 88 (177)
T ss_dssp --CCCEEE-EEECCTTCCHHHHHHHHHHHHHS--S--EEE---EEECCC-TTSCCSSCHHHHHHHHHHHCTTCTTEEEEE
T ss_pred CCCCEEEE-EEEeeCCCCHHHHHHHHHHHHHC--C--EEE---EEEcCC-CCCCCCCCHHHHHHHHHHHhCCCCCEEEEe
Confidence 34566655 99999999999999999999987 4 785 667654 577888999999999999999999999999
Q ss_pred cccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
|| .||+|+++.+. .+ +++.|.+. |.+ +|..
T Consensus 89 ~e------~l~vd~~~~~~--------------------------------a~-~ivrGlr~---------~~D--feye 118 (177)
T 3nbk_A 89 GH------GLVVDFVRSCG--------------------------------MT-AIVKGLRT---------GTD--FEYE 118 (177)
T ss_dssp CC------SCHHHHHHHTT--------------------------------CC-EEEEEECT---------TCC--HHHH
T ss_pred cC------chHHHHHHHcC--------------------------------CC-EEEECCCc---------hhH--HHHH
Confidence 98 48888877421 33 67888775 554 4444
Q ss_pred hhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 163 AGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 163 l~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
++.+.+ +| .| .....+++...+....||||.||+.++.|.++++|||+.|.+||+++
T Consensus 119 ~~~a~~---nr-------------~l-~~ietvfl~~~~~~~~ISST~IRe~~~~ggdv~~lVP~~V~~~l~~~ 175 (177)
T 3nbk_A 119 LQMAQM---NK-------------HI-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDR 175 (177)
T ss_dssp HHHHHH---HH-------------HH-HCCEEEEEECCGGGSSCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred HHHHHH---HH-------------hc-CCCceEEEeCCCcccccchHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 433321 11 12 22245666666556799999999999999999999999999999875
No 14
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.95 E-value=8.9e-28 Score=207.66 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=113.8
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccccC
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQS 88 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~~ 88 (344)
++++||||||+|+||+.|++.|++.++ +|+ ++|+.+ |+|+..++.++|++|+++|+++.+++.++++|
T Consensus 3 i~i~~GsFDpvH~GH~~l~~~a~~~~d----~v~---v~~~~~-p~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~~---- 70 (158)
T 1qjc_A 3 RAIYPGTFDPITNGHIDIVTRATQMFD----HVI---LAIAAS-PSKKPMFTLEERVALAQQATAHLGNVEVVGFS---- 70 (158)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTSS----EEE---EEEESC-CSSCCSSCHHHHHHHHHHHTTTCTTEEEEEEC----
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhCC----EEE---EEECCC-CCCCCCCCHHHHHHHHHHHHhcCCCeEEcccc----
Confidence 445999999999999999999999774 664 566665 55667889999999999999999999999998
Q ss_pred CcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCCE
Q psy9416 89 EWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGI 168 (344)
Q Consensus 89 ~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~~ 168 (344)
+||++||++++ .+ +|++|.|. |.+ ++.+...+
T Consensus 71 --~~~~~~l~~l~--------------------------------~~-~~v~G~d~---------~~~--~~~~~~~~-- 102 (158)
T 1qjc_A 71 --DLMANFARNQH--------------------------------AT-VLIRGLRA---------VAD--FEYEMQLA-- 102 (158)
T ss_dssp --SCHHHHHHHTT--------------------------------CC-EEEEECCT---------TCC--HHHHHHHH--
T ss_pred --hHHHHHHHHcC--------------------------------CC-EEEEeccc---------hhh--hHHHHHHH--
Confidence 38888875432 22 89999885 443 33333221
Q ss_pred EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 169 VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 169 vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
++.|... .....+.++..+....||||.||++++.|++++++||+.|.+||.+|
T Consensus 103 -~~~r~~~-------------~~~~~i~~~~~~~~~~iSST~IR~~i~~g~~~~~~vP~~V~~yI~~~ 156 (158)
T 1qjc_A 103 -HMNRHLM-------------PELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAK 156 (158)
T ss_dssp -HHHHHHC-------------TTSEEEEECCCGGGTTCCHHHHHHHHHTTCCCGGGSCHHHHHHHHHH
T ss_pred -HhCccCC-------------CCCCEEEEECCCCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHh
Confidence 1122110 00123445544422479999999999999999999999999999986
No 15
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.94 E-value=2.4e-27 Score=205.62 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=111.4
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCC--CCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKK--DLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~--~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
+++||||||+|+||+.|++.|++.++ +|+ ++|+.+ |+|+ ..++.++|++|+++++++.+++.|+++|.
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~d----~v~---v~~~~~-p~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~-- 72 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLFE----KVT---VAVLEN-PSKRGQYLFSAEERLAIIREATAHLANVEAATFSG-- 72 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHSS----EEE---EEEECC------CCSSCHHHHHHHHHHHTTTCTTEEEEEECS--
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHCC----EEE---EEEcCC-CCCCCCCCCCHHHHHHHHHHHhcCCCCEEEEecCc--
Confidence 45899999999999999999999874 664 566633 5564 57899999999999999999999999982
Q ss_pred CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCC
Q psy9416 88 SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHG 167 (344)
Q Consensus 88 ~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~ 167 (344)
||++|+++++ .+ +|++|.|. |.+ ++.+...+
T Consensus 73 ----~~~~~l~~l~--------------------------------~~-~~v~G~d~---------~~~--~~~~~~~~- 103 (160)
T 1od6_A 73 ----LLVDFVRRVG--------------------------------AQ-AIVKGLRA---------VSD--YEYELQMA- 103 (160)
T ss_dssp ----CHHHHHHHTT--------------------------------CS-EEEEEECT---------TSC--HHHHHHHH-
T ss_pred ----hHHHHHHHcC--------------------------------CC-EEEEeCCc---------ccc--hHHHHHHH-
Confidence 8998886432 22 78999883 555 34333221
Q ss_pred EEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 168 ~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
++.|.+. ... ..+.++..+....||||.||++++.|++++++||+.|.+||++|
T Consensus 104 --~~~r~~~------------~~~-~~i~~~~~~~~~~ISST~IR~~l~~G~~~~~~vP~~V~~~I~~~ 157 (160)
T 1od6_A 104 --HLNRQLY------------PGL-ETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAK 157 (160)
T ss_dssp --HHHHHHT------------TTC-EEEEEECCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred --HhCcCCC------------CCC-CEEEEeCCCCCCcccHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 1122110 001 24555554423589999999999999999999999999999987
No 16
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.93 E-value=6.1e-26 Score=199.69 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=108.9
Q ss_pred cccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 3 SAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 3 ~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
++||++++ |||||||+|+||+.++++|++.++ +|+ +.|+. +++|++..+.++|++|++.++++ +++.|++
T Consensus 2 ~~mm~i~i-~~GsFDPiH~GHl~li~~A~~~~d----~vi---v~v~~-~~~K~~~~~~~~R~~m~~~~~~~-~~v~V~~ 71 (162)
T 4f3r_A 2 NAMKPIAI-YPGTFDPLTNGHVDIIERALPLFN----KII---VACAP-TSRKDPHLKLEERVNLIADVLTD-ERVEVLP 71 (162)
T ss_dssp ---CCEEE-EEECCTTCCHHHHHHHHHHGGGCS----EEE---EEECC-C------CCHHHHHHHHHHHCCC-TTEEEEE
T ss_pred CCceEEEE-EEEEcCCCCHHHHHHHHHHHHHCC----cEE---EEEec-CCccCCCCCHHHHHHHHHHhhCC-CCEEEEe
Confidence 56777665 999999999999999999999774 775 55654 46777889999999999999999 9999999
Q ss_pred cccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
|+. +|+++++. ++ .+ +|+.|.|.+.+|. +|.-
T Consensus 72 ~~~------l~~~~~~~----~~----------------------------~~-~~v~G~r~~~Df~---------~e~~ 103 (162)
T 4f3r_A 72 LTG------LLVDFAKT----HQ----------------------------AN-FILRGLRAVSDFD---------YEFQ 103 (162)
T ss_dssp CCS------CHHHHHHH----TT----------------------------CC-EEEEEECSHHHHH---------HHHH
T ss_pred ccc------hHHHHHHH----cC----------------------------CC-EEEECCCchhhhh---------hHHH
Confidence 872 55555542 31 23 7999999876663 2211
Q ss_pred hhcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 163 AGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 163 l~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
+... . ..|...-..+++...+....||||.||+.++.|.++++|||+.|.+||+++
T Consensus 104 ~a~~-----n-------------r~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~~VP~~V~~~l~~~ 159 (162)
T 4f3r_A 104 LAHM-----N-------------YQLSPEIETIFLPAREGYSYVSGTMVREIVTLGGDVSPFVPPLVARHLQKR 159 (162)
T ss_dssp HHHH-----H-------------HHHCTTCEEEEEECCGGGSSCCHHHHHHHHHTTCCCTTTSCHHHHHHC---
T ss_pred HHHH-----H-------------HHhCCCccEEEEECCcccccccHHHHHHHHHcCCChhHhCCHHHHHHHHHH
Confidence 1110 1 112111235566665545699999999999999999999999999999875
No 17
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.92 E-value=7.1e-26 Score=201.36 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=117.5
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCCCeEEecccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQ 87 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~~ 87 (344)
++++||||||+|+||+.+++.|++.++ +|+ ++.|+.++|+| +.+++.++|++|++.++++.+ + +
T Consensus 5 ~~i~~G~Fdp~H~GH~~l~~~a~~~~d----~v~--v~v~~~~~p~~~~~~~~~~~R~~~~~~a~~~~~-~--~------ 69 (181)
T 1ej2_A 5 RGLLVGRMQPFHRGHLQVIKSILEEVD----ELI--ICIGSAQLSHSIRDPFTAGERVMMLTKALSENG-I--P------ 69 (181)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTCS----EEE--EEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTT-C--C------
T ss_pred EEEEEEEcCCcCHHHHHHHHHHHHhCC----eeE--EEECCCCCCcCCCCCCCHHHHHHHHHHHHhhCC-C--C------
Confidence 456999999999999999999988744 664 23456666654 457899999999999998876 2 0
Q ss_pred CCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcCC
Q psy9416 88 SEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHG 167 (344)
Q Consensus 88 ~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~~ 167 (344)
.+.++++|.|.+.... .|.+ .++++...++
T Consensus 70 ----------------------------------------------~~~v~v~~~d~~~~~~---~w~~-~~~~l~~~~~ 99 (181)
T 1ej2_A 70 ----------------------------------------------ASRYYIIPVQDIECNA---LWVG-HIKMLTPPFD 99 (181)
T ss_dssp ----------------------------------------------GGGEEEEECCCCSCHH---HHHH-HHHHHSCCCS
T ss_pred ----------------------------------------------CCcEEEEecCccCCHH---HHHH-HHHHHCCCCC
Confidence 0127788888877665 6876 2367777889
Q ss_pred EEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccc--cccccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWI--KNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 168 ~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~--~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
++++.|++. . ..+.. .++.++..+. ...||||.||++++.|.+++++||+.|.+||++|+||.
T Consensus 100 ~~v~gr~~~--~------~~~~~--~~i~~~~~~~~~~~~ISST~IR~~l~~G~~i~~lvP~~V~~yI~~~~l~~ 164 (181)
T 1ej2_A 100 RVYSGNPLV--Q------RLFSE--DGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEINGVE 164 (181)
T ss_dssp EEECCCHHH--H------HHHHH--TTCCEECCCCSSTTTSSHHHHHHHHHHTCCCGGGSCHHHHHHHHHTTHHH
T ss_pred EEEECCHHH--H------HHHHh--CCeEEEecCCCccCcCcHHHHHHHHHcCCChhHhCCHHHHHHHHHcCChH
Confidence 999888641 1 11221 2344555543 12499999999999999999999999999999999995
No 18
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.91 E-value=2e-24 Score=194.15 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=115.6
Q ss_pred ccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 4 AAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 4 ~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
+|||+++ ++|||||+|+||+.++++|++.++ +|+ +.+.. ++.|+.+.+.++|++|++.++++.+++.|.++
T Consensus 20 ~~mki~v-~~GsFDpiH~GHl~li~~A~~~~d----~vi---v~v~~-~p~K~~l~s~eeR~~ml~~~~~~v~~v~v~~f 90 (187)
T 3k9w_A 20 GSMVVAV-YPGTFDPLTRGHEDLVRRASSIFD----TLV---VGVAD-SRAKKPFFSLEERLKIANEVLGHYPNVKVMGF 90 (187)
T ss_dssp CCCCEEE-EEECCTTCCHHHHHHHHHHHHHSS----EEE---EEEEC-CGGGCCSSCHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCcEEEE-EEEeCCcCcHHHHHHHHHHHHHCC----cEE---EEEec-CCccCCCCCHHHHHHHHHHHhccCCcEEEEec
Confidence 3567655 899999999999999999999874 664 33333 35667789999999999999999999999988
Q ss_pred ccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHh
Q psy9416 84 EAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIA 163 (344)
Q Consensus 84 E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il 163 (344)
+ .|+.++++. ++ .+ ++++|.|++.+|. +|.-+
T Consensus 91 ~------~~~~d~l~~----l~----------------------------~~-~iv~G~r~~~Df~---------~E~~l 122 (187)
T 3k9w_A 91 T------GLLKDFVRA----ND----------------------------AR-VIVRGLRAVSDFE---------YEFQM 122 (187)
T ss_dssp S------SCHHHHHHH----TT----------------------------CS-EEEEECCTTSCHH---------HHHHH
T ss_pred h------hhHHHHHHH----cC----------------------------CC-EEEECCCcccccc---------hHHHH
Confidence 6 467766553 31 23 8999999876653 23221
Q ss_pred hcCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHHc
Q psy9416 164 GHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQH 236 (344)
Q Consensus 164 ~~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~ 236 (344)
... .| .|......+++...+....||||.||+.++.|.++++|||+.|.+||.++
T Consensus 123 a~~-----nr-------------~l~~~ietv~l~~~~~~~~ISST~IRe~~~~g~~i~~lVP~~V~~~i~~k 177 (187)
T 3k9w_A 123 AGM-----NR-------------YLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEK 177 (187)
T ss_dssp HHH-----HH-------------HHCTTCEEEEECCCGGGTTCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHH
T ss_pred HHH-----HH-------------HhCCCCcEEEEecccccccccHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 110 11 11111123444444435799999999999999999999999999999986
No 19
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.90 E-value=2.5e-24 Score=189.17 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=108.2
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC-CCCCCHHHHHHHHHHHhhcCC-CeEEeccccc
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK-KDLVSSKHRCEMVRLALEDST-WIKLSEWEAQ 86 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K-~~~~s~~~Rl~Ml~lAi~d~~-~i~V~d~E~~ 86 (344)
+++|||||||+|+||+.+++.|++.++ +|+ +++|+.++|+| +..++.++|++|+++++++.+ ++.+.
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~d----~v~--v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~~~v~v~----- 70 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEVD----EII--IGIGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYPI----- 70 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTCS----EEE--EEECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEEE-----
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhCC----eEE--EEEcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEE-----
Confidence 356999999999999999999998753 665 33567777655 356799999999999999876 44321
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhcC
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHH 166 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~~ 166 (344)
+.|.+.... .|.+ ..+++...+
T Consensus 71 ------------------------------------------------------~~d~l~~~~---~w~~-~~~~~~~~~ 92 (168)
T 1f9a_A 71 ------------------------------------------------------PIKDIEFNS---IWVS-YVESLTPPF 92 (168)
T ss_dssp ------------------------------------------------------ECCCCSCGG---GHHH-HHHHHSCCC
T ss_pred ------------------------------------------------------eeCCcccHH---HHHH-HHHHhccCC
Confidence 223222222 4654 134555566
Q ss_pred CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEecccccc---ccHHHHHHHHHcCCCccCCCcHHHHHHHHHcCCCC
Q psy9416 167 GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNE---ISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240 (344)
Q Consensus 167 ~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~---ISST~IR~~l~~g~~i~~lVP~~V~~YI~~~~LY~ 240 (344)
+++++.|++. . ..+.. .++.++..+. .+ ||||.||+.++.|.+++++||+.|.+||.+|+||.
T Consensus 93 ~~~~~~~~~~--~------~~~~~--~~i~~~~~~~-~~~~~ISST~IR~~~~~g~~i~~lvP~~V~~yI~~~~l~~ 158 (168)
T 1f9a_A 93 DIVYSGNPLV--R------VLFEE--RGYEVKRPEM-FNRKEYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIKGVE 158 (168)
T ss_dssp SEEECCCHHH--H------HHHHH--TTCEEECCCC-CSTTTSSHHHHHHHHHHTCCCGGGSCHHHHHHHHHHTHHH
T ss_pred CEEEECcHHH--H------Hhhhh--cCcEEEeCCc-cccCcccHHHHHHHHHcCCChhHcCCHHHHHHHHHcCChH
Confidence 7776665421 0 11111 2456666653 44 99999999999999999999999999999999884
No 20
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.89 E-value=1e-23 Score=201.86 Aligned_cols=163 Identities=21% Similarity=0.232 Sum_probs=119.9
Q ss_pred CcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC-CCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG-KKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 2 ~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~-K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
|++||++++ |||||||+|+||+.+++.|++.++ +|+ +++|+.++++ |+.+++.++|++|+++++++.+
T Consensus 3 ~~~~~~~~i-~~G~FdP~H~GH~~li~~a~~~~d----~v~--v~v~~~~~p~~~~~~~~~~~R~~m~~~~~~~~~---- 71 (341)
T 2qjo_A 3 MQTKYQYGI-YIGRFQPFHLGHLRTLNLALEKAE----QVI--IILGSHRVAADTRNPWRSPERMAMIEACLSPQI---- 71 (341)
T ss_dssp CSSSEEEEE-EEECCTTCCHHHHHHHHHHHHHEE----EEE--EEEEEETCCCCSSSCSCHHHHHHHHHTTSCHHH----
T ss_pred ccceeeEEE-EEEEeCCCCHHHHHHHHHHHHhCC----eEE--EEECCcccCCCCCCCCCHHHHHHHHHHHhhhcc----
Confidence 566777655 899999999999999999999884 554 3455555444 4567899999999999876532
Q ss_pred eccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHH
Q psy9416 81 SEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDIN 160 (344)
Q Consensus 81 ~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e 160 (344)
. .++++++|.|.+.++. .|.+. .+
T Consensus 72 -----------------------~-----------------------------~~~~~i~~~d~~~~~~---~w~~~-~~ 95 (341)
T 2qjo_A 72 -----------------------L-----------------------------KRVHFLTVRDWLYSDN---LWLAA-VQ 95 (341)
T ss_dssp -----------------------H-----------------------------TTEEEEEEECCTTCHH---HHHHH-HH
T ss_pred -----------------------C-----------------------------CeEEEEECCCCcCChH---HHHHH-HH
Confidence 1 3579999999988886 68872 24
Q ss_pred HHhhc-----CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccC--CCcHHHHHHH
Q psy9416 161 HIAGH-----HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKY--LINDKVEQYI 233 (344)
Q Consensus 161 ~il~~-----~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~--lVP~~V~~YI 233 (344)
++++. ++++++.++..... ..+..+ .++.++..+...+||||.||++++.|+++.+ |||+.|.+||
T Consensus 96 ~l~~~l~r~~~~~~~~g~~~~~~~------~~~~~~-~~~~~~~~~~~~~iSST~IR~~l~~g~~~~~~~lvp~~v~~~i 168 (341)
T 2qjo_A 96 QQVLKITGGSNSVVVLGHRKDASS------YYLNLF-PQWDYLETGHYPDFSSTAIRGAYFEGKEGDYLDKVPPAIADYL 168 (341)
T ss_dssp HHHHHHHTTCSCEEEEECCCSGGG------GGGGSC-TTSEEEECCCCTTCCHHHHHHHHHHTCGGGTTTTSCHHHHHHH
T ss_pred HHhHHhcCCCceEEEEcCCCCCCh------HHHHhc-cccceeecccCCCCCcHHHHHHHHcCCCcchhhhCCHHHHHHH
Confidence 56665 67888865532111 111222 2345555543479999999999999998777 9999999999
Q ss_pred HHcCC
Q psy9416 234 YQHGL 238 (344)
Q Consensus 234 ~~~~L 238 (344)
.++++
T Consensus 169 ~~~~~ 173 (341)
T 2qjo_A 169 QTFQK 173 (341)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 99876
No 21
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.88 E-value=2.9e-22 Score=198.46 Aligned_cols=171 Identities=15% Similarity=0.071 Sum_probs=136.1
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC-CC----eEEeccccc
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS-TW----IKLSEWEAQ 86 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~-~~----i~V~d~E~~ 86 (344)
.+|||||+|+||+.|++.|++.++.+ .|+ |.|... ++|.+.++.++|++|++++++.+ |. +.+.++|..
T Consensus 197 afqTrNPiHrgH~~l~~~Ale~~~~D--~vl---l~P~~g-~~K~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~m~ 270 (396)
T 1jhd_A 197 AFQTRNPMHRAHEELCRMAMESLDAD--GVV---VHMLLG-KLKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDML 270 (396)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHTCS--EEE---EEEEEC-CCCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCC
T ss_pred EeccCCCCchHHHHHHHHHHHHcCCC--eEE---EEECCC-CCCCCCCCHHHHHHHHHHHHHhcCCCcceEEEechHHhh
Confidence 39999999999999999999999877 775 788866 47788899999999999999994 76 888899999
Q ss_pred cCCcccHHHHHHH-HHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEecccc--ccCcCCCCCCcchHHHHh
Q psy9416 87 QSEWTRTRVSLDH-HEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVL--ESMAVPNLWSADDINHIA 163 (344)
Q Consensus 87 ~~~~syT~dtL~~-lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l--~~~~~p~~W~~~~~e~il 163 (344)
.+|++||+ +.. +++.| +++ +||+|.|.+ .+|. .|++ +++|+
T Consensus 271 ~aGPreai--lhaiirkn~----------------------------G~t-~fIVGrDhag~~~~y---~~~~--aq~il 314 (396)
T 1jhd_A 271 YAGPREAV--LHAYFRQNM----------------------------GAT-HFIIGRDHAGVGDYY---GAFD--AQTIF 314 (396)
T ss_dssp CCTHHHHH--HHHHHHHHT----------------------------TCS-EEEECTTTTCCTTCS---CTTH--HHHHH
T ss_pred cCCchHHH--HHHHHHHcC----------------------------CCc-EEEECCCCCCccccC---Ccch--HHHHH
Confidence 99999987 333 44444 256 999999997 6675 6887 89999
Q ss_pred hc--------CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c-----ccccccHHHHHHHHHcCC-CccCCCcHH
Q psy9416 164 GH--------HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W-----IKNEISSTYLRRALRRGD-SIKYLINDK 228 (344)
Q Consensus 164 ~~--------~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~-----~~~~ISST~IR~~l~~g~-~i~~lVP~~ 228 (344)
+. +.++++.|.++... ...+..++. | ....||||+||+++++|+ ....++|++
T Consensus 315 ~~~~~~~~l~i~iv~~~~~~Y~~~------------~~~~~~~~~~p~~~~~~~~~ISgT~IR~~L~~G~~pP~~f~~pe 382 (396)
T 1jhd_A 315 DDEVPEGAMEIEIFRADHTAYSKK------------LNKIVMMRDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPE 382 (396)
T ss_dssp HHTSCTTSCSCEEEECCCEEEETT------------TTEEEEGGGCTTCCGGGEECCCHHHHHHHHHTTCCCCTTTCCHH
T ss_pred HhcccccccceeEEecccceecCC------------CCeEEEccccCcccCCCccccCHHHHHHHHHCCCCCCcccCCHH
Confidence 86 57888888866322 122333311 1 146899999999999997 558899999
Q ss_pred HHHHHHHc
Q psy9416 229 VEQYIYQH 236 (344)
Q Consensus 229 V~~YI~~~ 236 (344)
|.+||.++
T Consensus 383 V~~~I~~~ 390 (396)
T 1jhd_A 383 VAKILMDY 390 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999984
No 22
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.87 E-value=3.1e-23 Score=181.55 Aligned_cols=155 Identities=16% Similarity=0.263 Sum_probs=106.6
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecccc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEA 85 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~ 85 (344)
||++ +|||||||+|+||+.++++|++.++ +|+ +.+ ..+++|++..+.++|++|++.++++.+++.|++++.
T Consensus 2 m~i~-i~~GsFDPiH~GHl~ii~~A~~~~D----~vi---v~v-~~~~~K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~ 72 (157)
T 3nv7_A 2 QKVG-IYPGTFDPVTNGHIDIIHRSSELFE----KLI---VAV-AHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFEG 72 (157)
T ss_dssp -CEE-EEEECCTTCCHHHHHHHHHHHTTSS----EEE---EEE-ECCGGGCCSSCHHHHHHHHHHHHTTSTTEEEEEECS
T ss_pred CEEE-EEEEEcCCCCHHHHHHHHHHHHhCC----ceE---EEE-ccCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 4555 4999999999999999999999764 675 333 334567788999999999999999999999988852
Q ss_pred ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhhc
Q psy9416 86 QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGH 165 (344)
Q Consensus 86 ~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~~ 165 (344)
.+++ +++ +++ | + +++.|.+...++. +|.-+..
T Consensus 73 ------l~~~---~~~-~~~------~----------------------~-~ivrG~r~~~D~~---------ye~~~a~ 104 (157)
T 3nv7_A 73 ------LLAY---LAK-EYH------C----------------------K-VLVRGLRVVSDFE---------YELQMGY 104 (157)
T ss_dssp ------CHHH---HHH-HTT------C----------------------C-CBCCCCSCCCCHH---------HHHHHHH
T ss_pred ------hHHH---HHH-HcC------C----------------------C-EEEECCcccchhh---------hhHHHHH
Confidence 2333 333 231 2 2 6888877665442 2221110
Q ss_pred CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHcCCCccCCCcHHHHHHHHH
Q psy9416 166 HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQ 235 (344)
Q Consensus 166 ~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI~~ 235 (344)
. ...|...-..+++...+....||||.||+.+..|.+|+++||+.|.+||++
T Consensus 105 ~------------------n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~~ggdv~~~VP~~V~~~l~~ 156 (157)
T 3nv7_A 105 A------------------NKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLISK 156 (157)
T ss_dssp H------------------HHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHHTTCCCTTTSCTTTHHHHCC
T ss_pred H------------------HHHhCCCceEEEEcCCcccceeeHHHHHHHHHcCCChHHhCCHHHHHHHhh
Confidence 0 011110012333333333468999999999999999999999999999864
No 23
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.85 E-value=2e-21 Score=189.76 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=135.1
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC-CC----eEE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS-TW----IKL 80 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~-~~----i~V 80 (344)
+++++ .|||||+|+||..|++.|++.+ + .|+ +.|...+ .|.+.++.++|++|++++++++ |. +.+
T Consensus 156 ~~Vva--fqTrNPiHrgH~~l~~~ale~~--d--~vl---l~P~~g~-~K~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~ 225 (349)
T 1v47_A 156 RKVVA--FQTRNAPHRAHEYLIRLGLELA--D--GVL---VHPILGA-KKPDDFPTEVIVEAYQALIRDFLPQERVAFFG 225 (349)
T ss_dssp CSEEE--EEESSCCCHHHHHHHHHHHHHS--S--EEE---EEEBCSC-CCTTSCCHHHHHHHHHHHHHHHSCGGGEEECC
T ss_pred CeEEE--eecCCCCchHHHHHHHHHHHhC--C--cEE---EEECCCC-CCCCCCCHHHHHHHHHHHHhhcCCCcceEEEe
Confidence 34444 6999999999999999999963 4 674 7888654 6788899999999999999996 87 667
Q ss_pred eccccccCCcccHHHHHHHH-HHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEecccc--ccCcCCCCCCcc
Q psy9416 81 SEWEAQQSEWTRTRVSLDHH-EDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVL--ESMAVPNLWSAD 157 (344)
Q Consensus 81 ~d~E~~~~~~syT~dtL~~l-k~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l--~~~~~p~~W~~~ 157 (344)
.++|...+|++||+ |..+ ++.| ++. +||+|.|.. .+|- .|++
T Consensus 226 ~p~~m~~aGPreai--lhaiirkn~----------------------------G~t-~fIVGrDhag~~~~y---~~~~- 270 (349)
T 1v47_A 226 LATPMRYAGPKEAV--FHALVRKNF----------------------------GAT-HFLVGRDHAGVGDFY---DPYA- 270 (349)
T ss_dssp BCSCCCCCTHHHHH--HHHHHHHHT----------------------------TCS-EEEECTTTTCSTTCS---CTTH-
T ss_pred chHHhhcCCcHHHH--HHHHHHHcC----------------------------CCc-EEEECcCCCCccccc---Cccc-
Confidence 88888899999985 5553 3333 255 999999997 6665 6887
Q ss_pred hHHHHhhcC-----CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEe-cc-----ccccccHHHHHHHHHcCC-CccCCC
Q psy9416 158 DINHIAGHH-----GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVN-EW-----IKNEISSTYLRRALRRGD-SIKYLI 225 (344)
Q Consensus 158 ~~e~il~~~-----~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~-~~-----~~~~ISST~IR~~l~~g~-~i~~lV 225 (344)
+++|++.+ .++++.|.++... ...+..+. .| ....||||+||+++++|+ ...+++
T Consensus 271 -aq~i~~~~~~l~i~~v~~~~~~Y~~~------------~~~~~~~~~~p~~~~~~~~~ISgT~iR~~L~~G~~pp~~f~ 337 (349)
T 1v47_A 271 -AHRIFDRLPPLGIEIVKVGAVFHCPL------------CGGIASERTCPEGHREKRTAISMTKVRALLREGKAPPSELV 337 (349)
T ss_dssp -HHHGGGGSCCCSSEEEECCCEEEETT------------TTEEEETTTSCGGGGGGCEECCHHHHHHHHHTTCCCCTTTS
T ss_pred -HHHHHHhhhhcCceEEeccccEEccc------------CCceEEccccCccCCCcccccCHHHHHHHHHCcCCCchhcC
Confidence 89999997 7888888776322 12233331 11 147899999999999998 457999
Q ss_pred cHHHHHHHHHc
Q psy9416 226 NDKVEQYIYQH 236 (344)
Q Consensus 226 P~~V~~YI~~~ 236 (344)
|++|.+||++.
T Consensus 338 ~peV~~~I~~~ 348 (349)
T 1v47_A 338 RPELLPILRRG 348 (349)
T ss_dssp CGGGHHHHHTT
T ss_pred CHHHHHHHHhh
Confidence 99999999873
No 24
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.84 E-value=2.5e-21 Score=186.52 Aligned_cols=164 Identities=12% Similarity=0.058 Sum_probs=107.8
Q ss_pred CcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC-CCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG-KKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 2 ~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~-K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
|+.||++ +||||||||+|+||+.+++.|++.++ +|+ ++++++++++ |+..++.++|++|+++++++.+
T Consensus 3 m~~~~~~-~i~~GtFdP~h~GHl~~~~~a~~~~d----~~~--~~v~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~---- 71 (352)
T 2qjt_B 3 MDPMYDI-SVFIGRFQPFHKGHLHNIIIALQNSK----KVI--INIGSCFNTPNIKNPFSFEQRKQMIESDLQVAG---- 71 (352)
T ss_dssp ---CEEE-EEEEECCTTCCHHHHHHHHHHHHSEE----EEE--EEEEEESCCCCSSSCSCHHHHHHHHHHHHHHTT----
T ss_pred ccccccE-EEEEEecCCCChHHHHHHHHHHHhCC----cEE--EEECCCCCCcccCCCCCHHHHHHHHHHHhcccc----
Confidence 3445555 45999999999999999999999865 564 3444444433 4567899999999999998753
Q ss_pred eccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHH
Q psy9416 81 SEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDIN 160 (344)
Q Consensus 81 ~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e 160 (344)
+ | ..+++++.|.|.+.... .|.+.--+
T Consensus 72 -----------------------~-------~--------------------~~~~~~~~~~d~~~~~~---~~~~~~~~ 98 (352)
T 2qjt_B 72 -----------------------I-------D--------------------LDTVVIEPLADYFYQEQ---KWQDELRK 98 (352)
T ss_dssp -----------------------C-------C--------------------GGGEEEEEEECCTTCHH---HHHHHHHH
T ss_pred -----------------------C-------c--------------------cceEEEEEcCCCcCChH---HHHHHHHH
Confidence 1 1 24667777777766665 57662113
Q ss_pred HHhhc----CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccccccccHHHHHHHHHc-C--CC-ccCCCcH-HHHH
Q psy9416 161 HIAGH----HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRR-G--DS-IKYLIND-KVEQ 231 (344)
Q Consensus 161 ~il~~----~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~~~~ISST~IR~~l~~-g--~~-i~~lVP~-~V~~ 231 (344)
.+.+. ..++++.|....... .+. ....+..++.+....||||.||+.+.. | .+ |++|||+ .|.+
T Consensus 99 ~~~~~~~~~~~~~~ig~~~~~~~~------~~~-~~~~~~~~~~~~~~~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~ 171 (352)
T 2qjt_B 99 NVYKHAKNNNSIAIVGHIKDSSSY------YIR-SFPEWDYIGVDNYKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYN 171 (352)
T ss_dssp HHTTTSCSSCCEEECCBSSSSHHH------HHH-HCTTSEECCBCCTTCCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHH
T ss_pred HHHHhcccCCeEEEEcCCCCcchh------hhh-cCCccceeccCCCCCCCchHHHHHHhccCcccchhhhcCChHHHHH
Confidence 33332 355666554321111 011 111233444433467999999999997 8 78 9999999 9999
Q ss_pred HHHHc
Q psy9416 232 YIYQH 236 (344)
Q Consensus 232 YI~~~ 236 (344)
||.+.
T Consensus 172 ~I~~w 176 (352)
T 2qjt_B 172 FLTKF 176 (352)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 25
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.74 E-value=5.1e-19 Score=172.29 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=118.5
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC-----C----CCCCCHHHHHHHHHHHhhcCCC-e
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG-----K----KDLVSSKHRCEMVRLALEDSTW-I 78 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~-----K----~~~~s~~~Rl~Ml~lAi~d~~~-i 78 (344)
+++|||||||+|+||+.++++|++.+ + +|+ +.|++++++ | +..++.++|++|++.++++.++ +
T Consensus 4 ~~i~~GtFdP~h~GHl~~~~~a~~~~--d--~v~---v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~ 76 (365)
T 1lw7_A 4 VGVIFGKFYPVHTGHINMIYEAFSKV--D--ELH---VIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQI 76 (365)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHTTC--S--EEE---EEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTE
T ss_pred EEEEEEeeCCCCHHHHHHHHHHHHHC--C--EEE---EEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcE
Confidence 45699999999999999999999976 4 775 677777653 1 3358999999999999999999 9
Q ss_pred EEeccccccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcch
Q psy9416 79 KLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADD 158 (344)
Q Consensus 79 ~V~d~E~~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~ 158 (344)
+|+.++.. ..++|. +.++ .|.. .
T Consensus 77 ~v~~~~~~-~~~~y~-~~~~------------------------------------------------------~~~~-~ 99 (365)
T 1lw7_A 77 FIHHLVED-GIPSYP-NGWQ------------------------------------------------------SWSE-A 99 (365)
T ss_dssp EEEEEECS-SSCCTT-SCHH------------------------------------------------------HHHH-H
T ss_pred EEEEeccC-CCCCCc-hHHH------------------------------------------------------HHHH-H
Confidence 99998765 333321 0000 0110 0
Q ss_pred HHHHhh----cCCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEecc-ccccccHHHHHHHHHcCCCccCCCcHHHHHHH
Q psy9416 159 INHIAG----HHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEW-IKNEISSTYLRRALRRGDSIKYLINDKVEQYI 233 (344)
Q Consensus 159 ~e~il~----~~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~-~~~~ISST~IR~~l~~g~~i~~lVP~~V~~YI 233 (344)
.+.+++ .+++ ++.++.+.. ....+.+.-.+.+++.. ....||||.||+... +++.+||..|.+|+
T Consensus 100 ~~~~i~~~~~~~~~-~~~~e~~~~------~~~~~~~~~e~v~l~~~~~~~~iSsT~IRe~~~---~~~~~v~~~v~~~l 169 (365)
T 1lw7_A 100 VKTLFHEKHFEPSI-VFSSEPQDK------APYEKYLGLEVSLVDPDRTFFNVSATKIRTTPF---QYWKFIPKEARPFF 169 (365)
T ss_dssp HHHHHHHTTCCCSE-EECSCGGGH------HHHHHHTCCEEECCCSSCCSSCCCHHHHHHCGG---GGGGGSCTTTGGGT
T ss_pred HHHHhhccCCCCcE-EEECCCCCH------HHHHHHcCCceEEeCCcccCCCCCHHHHHhChh---hChhhCCHHHHHhh
Confidence 112222 2332 333332211 01112222334455432 246899999999653 46789999999999
Q ss_pred HHc-CCCCCCCCCCcccchhhhhhhhhhccCCCCC
Q psy9416 234 YQH-GLYSVVESPHLEVSPILDLLSNLNNNFLPNG 267 (344)
Q Consensus 234 ~~~-~LY~~~~~~k~~~~~~~~~~~~l~~~~~~~~ 267 (344)
.+. .|-+...+|||+ |+.-|++.+.+..
T Consensus 170 g~k~~IvG~nGsGKST------Llk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSV------LVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHH------HHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHH------HHHHHHHHhCCCc
Confidence 865 677899999999 7877777776654
No 26
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.69 E-value=3.2e-17 Score=137.79 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=55.9
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC----CCCCCCCCHHHHHHHHHHHhhcCCCeEEec
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK----YGKKDLVSSKHRCEMVRLALEDSTWIKLSE 82 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~----~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d 82 (344)
++++ ++|+|||+|+||+.+++.|++.++ +++ +.++.++ +.|..+.+.++|++|++ ++.+.+.+.+
T Consensus 2 ~~~~-~~G~FDp~H~GH~~li~~a~~~~~----~~~---v~v~~~~~~~~~~~~~l~~~~eR~~~l~-~~~~~d~v~~-- 70 (132)
T 2b7l_A 2 KRVI-TYGTYDLLHYGHIELLRRAREMGD----YLI---VALSTDEFNQIKHKKSYYDYEQRKMMLE-SIRYVDLVIP-- 70 (132)
T ss_dssp CEEE-EEECCCSCCHHHHHHHHHHHHTSS----EEE---EEEECHHHHHHTTCCCSSCHHHHHHHHH-TBTTCCEEEE--
T ss_pred eEEE-EeeecCcCCHHHHHHHHHHHHhCC----cEE---EEEECCHHHhccCCCCCCCHHHHHHHHH-hcCCCCEEEE--
Confidence 5554 899999999999999999999765 443 3333322 33455789999999999 7876776655
Q ss_pred cccccCCcccHHHHHHHHHH
Q psy9416 83 WEAQQSEWTRTRVSLDHHED 102 (344)
Q Consensus 83 ~E~~~~~~syT~dtL~~lk~ 102 (344)
+.+|+ ++++++++
T Consensus 71 ------~~~~~-~~~~~~~~ 83 (132)
T 2b7l_A 71 ------EKGWG-QKEDDVEK 83 (132)
T ss_dssp ------ECCGG-GHHHHHHH
T ss_pred ------CCChH-HHHHHHHH
Confidence 23455 56766653
No 27
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.67 E-value=5e-17 Score=135.95 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=48.3
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC----CCCCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK----YGKKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~----~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
++++ ++|+|||+|+||+.++++|++.++ +++ +.++.++ +.++.+.+.++|++|++ ++.+.+++.+
T Consensus 2 ~~~~-~~G~FDp~H~GH~~li~~a~~~~d----~~~---v~v~~~~~~~~~~~~~l~~~~eR~~~l~-~~~~~d~v~~ 70 (129)
T 1coz_A 2 KKVI-TYGTFDLLHWGHIKLLERAKQLGD----YLV---VAISTDEFNLQKQKKAYHSYEHRKLILE-TIRYVDEVIP 70 (129)
T ss_dssp CEEE-EEECCCSCCHHHHHHHHHHHTTSS----EEE---EEEECHHHHHHHTCCCSSCHHHHHHHHT-TBTTCCEEEE
T ss_pred cEEE-EEEeCCCCCHHHHHHHHHHHHhCC----CeE---EEEECCHHHhcCCCCCCCCHHHHHHHHH-hcCCCCEEEe
Confidence 4554 899999999999999999998764 553 3444321 23356789999999999 6776676553
No 28
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.39 E-value=2.1e-13 Score=117.89 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=55.5
Q ss_pred EeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCC-C--CCCCCHHHHHHHHHHHh-hcC-CCeEEecccc
Q psy9416 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYG-K--KDLVSSKHRCEMVRLAL-EDS-TWIKLSEWEA 85 (344)
Q Consensus 11 ifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~-K--~~~~s~~~Rl~Ml~lAi-~d~-~~i~V~d~E~ 85 (344)
+|||||||+|+||+.+++.|++. +.+ +|+ +.|+.+++. | +...+.++|++|+++|+ ++. +.+.+..++.
T Consensus 4 i~gGtFDPiH~GHl~l~~~a~~~-~~d--~vi---v~v~~~~~~~k~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D 77 (148)
T 3do8_A 4 ALGGTFEPLHEGHKKLIDVAIKL-GGR--DIT---IGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITN 77 (148)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHH-HTT--CEE---EEEECHHHHHHHSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECS
T ss_pred EEEeeCCCCCHHHHHHHHHHHHh-CCC--EEE---EEECCCccccccCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecC
Confidence 48999999999999999999986 445 775 677777664 3 45789999999999999 875 4677666654
No 29
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.30 E-value=3.5e-12 Score=109.05 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=45.8
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC---CCCCCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK---YGKKDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~---~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
|++++ ++|+|||+|+||+.++++|++..+ +++. .+..... ..++.+.+.++|++|++. +...+.+.+
T Consensus 2 m~~v~-~~G~FD~vH~GH~~li~~a~~~~~----~~~v--~v~~~~~~~~~~~~~l~~~~eR~~~l~~-~~~vd~v~~ 71 (143)
T 3glv_A 2 MIRVM-ATGVFDILHLGHIHYLKESKKLGD----ELVV--VVARDSTARNNGKIPIFDENSRLALISE-LKVVDRAIL 71 (143)
T ss_dssp CCEEE-EEECCSSCCHHHHHHHHHHHTTSS----EEEE--EECCHHHHHHTTCCCSSCHHHHHHHHTT-BTTCSEEEE
T ss_pred ceEEE-EEeecCCCCHHHHHHHHHHHHhCC----CcEE--EEECCcchhhcCCCCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 56665 899999999999999999998654 3431 1121111 123567899999999986 443455544
No 30
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.10 E-value=1.6e-10 Score=106.75 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=47.4
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC---CCC-CCCCCHHHHHHHHHHHhhcCCCeEE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK---YGK-KDLVSSKHRCEMVRLALEDSTWIKL 80 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~---~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V 80 (344)
++++ +++|+|||+|.||+.++++|++.++.+ +|+ +....+. ..| ++..+.++|++|++ ++...+.+.+
T Consensus 76 ~~~V-~~~GtFD~~H~GHl~iL~rAk~lf~gD--~LI---VgV~~D~~v~~~Kg~pi~s~eER~e~v~-~~k~VD~Vvv 147 (236)
T 3hl4_A 76 PVRV-YADGIFDLFHSGHARALMQAKNLFPNT--YLI---VGVCSDELTHNFKGFTVMNENERYDAVQ-HCRYVDEVVR 147 (236)
T ss_dssp CEEE-EEEECCTTCCHHHHHHHHHHHTSSSSE--EEE---EEECCHHHHHHHTCCCSSCHHHHHHHHH-TBTTCSEEES
T ss_pred CeEE-EEeccCCCCCHHHHHHHHHHHHhcCCC--eEE---EEEcccHHHhhcCCCCCCCHHHHHHHHH-HhCCCCeEEE
Confidence 4445 489999999999999999999876434 554 2222332 123 46789999999999 4565555443
No 31
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=104.35 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=48.3
Q ss_pred CCcccCceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccC----CCCCCCCCHHHHHHHHHHHhhcCC
Q psy9416 1 MSSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDK----YGKKDLVSSKHRCEMVRLALEDST 76 (344)
Q Consensus 1 ~~~~~~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~----~~K~~~~s~~~Rl~Ml~lAi~d~~ 76 (344)
|-.++|++++ +.|+|||+|.||+.++++|++..+ +++ +..+.++ .+++...+.++|++|++. ++..+
T Consensus 2 m~~~~~~~v~-~~G~FD~lH~GH~~lL~~A~~l~d----~Li---VgV~~d~~v~~~K~~pi~s~eER~~~l~~-l~~VD 72 (341)
T 3elb_A 2 MGGRRAVRVW-CDGCYDMVHYGHSNQLRQARAMGD----YLI---VGVHTDEEIAKHKGPPVFTQEERYKMVQA-IKWVD 72 (341)
T ss_dssp --CCCCCEEE-EEECCCSCCHHHHHHHHHHHHTSS----EEE---EEECCHHHHHHHSSCCSSCHHHHHHHHHH-BTTCC
T ss_pred CCCCCceEEE-EEeeCCCCCHHHHHHHHHHHHhCC----cCE---EEeecCHHHhccCCCCCCCHHHHHHHHHH-cCCCC
Confidence 5566677766 899999999999999999999765 343 1222221 122467899999999995 55555
Q ss_pred CeE
Q psy9416 77 WIK 79 (344)
Q Consensus 77 ~i~ 79 (344)
.+.
T Consensus 73 ~Vv 75 (341)
T 3elb_A 73 EVV 75 (341)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 32
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.89 E-value=8.8e-09 Score=105.13 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=127.3
Q ss_pred ceEEEeCCccchhhHHH-HHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC--eE--Ee
Q psy9416 7 KTVLFVCGSYNPPTNMH-LRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW--IK--LS 81 (344)
Q Consensus 7 kivlifgGSFdP~H~GH-l~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~--i~--V~ 81 (344)
+++. ..|+||+|+|| ..|.+.|++... .|+ +.|.-- +.|.+.++.+-|++..+.+++.+|. +. +.
T Consensus 190 ~v~a--fqtrnP~HraH~e~~~~~a~e~~~----~ll---l~pl~g-~~k~~di~~~~r~~~~~~~~~~yp~~~~~l~~~ 259 (511)
T 1g8f_A 190 RVVA--FQTRNPMHRAHRELTVRAAREANA----KVL---IHPVVG-LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLL 259 (511)
T ss_dssp CEEE--EEESSCCCHHHHHHHHHHHHHHTC----EEE---EEEBCS-BCSTTCCCHHHHHHHHHHHGGGSCTTSEEECCB
T ss_pred cEEE--EecCCCCchHHHHHHHHHHHHcCC----cEE---EEECCC-CCCCCCCCHHHHHHHHHHHHHhCCcccEEEEec
Confidence 4444 56999999999 566666665332 343 556433 5677889999999999999998875 33 35
Q ss_pred ccccccCCcccHHHHHHH-HHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccc--------cCcCCC
Q psy9416 82 EWEAQQSEWTRTRVSLDH-HEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLE--------SMAVPN 152 (344)
Q Consensus 82 d~E~~~~~~syT~dtL~~-lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~--------~~~~p~ 152 (344)
+++..-+||...+ +.. +++.|+ +. .||+|-|... ++-
T Consensus 260 p~~m~yaGprea~--~hai~r~n~G----------------------------~t-h~IvGrdhAg~g~~~~~~~~Y--- 305 (511)
T 1g8f_A 260 PLAMRMSGDREAV--WHAIIRKNYG----------------------------AS-HFIVGRDHAGPGKNSKGVDFY--- 305 (511)
T ss_dssp CCBCCCCHHHHHH--HHHHHHHHTT----------------------------CS-EEECCTTTTCCCBCTTSCBSS---
T ss_pred chhhhccCcHHHH--HHHHHHHhCC----------------------------Cc-eEEeCCCCCCCCCCCcccccC---
Confidence 5666667776544 333 566663 44 8999999865 332
Q ss_pred CCCcchHHHHhhcC------CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-cc----cccccHHHHHHHHHcCCCc
Q psy9416 153 LWSADDINHIAGHH------GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-WI----KNEISSTYLRRALRRGDSI 221 (344)
Q Consensus 153 ~W~~~~~e~il~~~------~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~~----~~~ISST~IR~~l~~g~~i 221 (344)
.|+ +.++|+..+ ..+.+..-.+... .+.+..++. +. ...||+|+||+.+++|..+
T Consensus 306 ~~~--~aq~i~~~~~~~l~i~pv~fd~~~y~~~------------~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~ 371 (511)
T 1g8f_A 306 GPY--DAQELVESYKHELDIEVVPFRMVTYLPD------------EDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEI 371 (511)
T ss_dssp CTT--HHHHHHHHTHHHHCSEEECCCCEEEEGG------------GTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCC
T ss_pred Ccc--hHHHHHHhCccccCceEEeecceeEecc------------cCeEEEcccCCCCcccccccCHHHHHHHHhCCCCC
Confidence 233 367888765 4444433222111 134444432 21 3689999999999999988
Q ss_pred -cCCCcHHHHHHHHHcC---------C--CCCCCCCCcccchhhhhhhhhhccCC
Q psy9416 222 -KYLINDKVEQYIYQHG---------L--YSVVESPHLEVSPILDLLSNLNNNFL 264 (344)
Q Consensus 222 -~~lVP~~V~~YI~~~~---------L--Y~~~~~~k~~~~~~~~~~~~l~~~~~ 264 (344)
..+.++.|.+.+++.. + -+-.-+|||+ +-..|+..++
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKST------Ia~~La~~L~ 420 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQ------LSIALLSTFL 420 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHH------HHHHHHHHHT
T ss_pred CccccChhhHHHHHHhcccccccceEEEecccCCCCHHH------HHHHHHHHHH
Confidence 6789999999988732 1 1456688988 5566665554
No 33
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.88 E-value=1.5e-08 Score=98.49 Aligned_cols=74 Identities=7% Similarity=0.117 Sum_probs=49.7
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCccc---CCCC--CCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHD---KYGK--KDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~---~~~K--~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
.+..|+||++|+||..+++.|++..+..+. .|+ ..|-|... .+.+ +.+.+.++|++|++.. +.+.+.+.++
T Consensus 18 vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vv-vtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~--gVD~v~v~~F 94 (338)
T 2x0k_A 18 AVTIGVFDGVHRGHQKLINATVEKAREVGAKAIM-VTFDPHPVSVFLPRRAPLGITTLAERFALAESF--GIDGVLVIDF 94 (338)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEE-EEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHT--TCSEEEEECT
T ss_pred EEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEE-EEecCCHHHHcCCccCCCCCCCHHHHHHHHHhc--CCCEEEEccc
Confidence 347999999999999999999987765444 232 13333210 1122 3478999999999973 4566666666
Q ss_pred ccc
Q psy9416 84 EAQ 86 (344)
Q Consensus 84 E~~ 86 (344)
...
T Consensus 95 ~~~ 97 (338)
T 2x0k_A 95 TRE 97 (338)
T ss_dssp TTS
T ss_pred cHH
Confidence 433
No 34
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=98.88 E-value=1.6e-08 Score=100.02 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=113.9
Q ss_pred ceEEEeCCccchhhHHH-HHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC----eEEe
Q psy9416 7 KTVLFVCGSYNPPTNMH-LRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW----IKLS 81 (344)
Q Consensus 7 kivlifgGSFdP~H~GH-l~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~----i~V~ 81 (344)
++++ ..|+||+|+|| ..|.+.|++... .|+ +.|.-- +.|.+.++.+-|++..+.+++.+|. +.+.
T Consensus 189 ~Vva--fqtrNP~HraH~e~~~r~a~e~~~----~ll---lhPlvG-~tK~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~ 258 (395)
T 1r6x_A 189 RVVA--FQTRNPMHRAHRELTVRAAREANA----KVL---IHPVVG-LTKPGDIDHHTRVRVYQEIIKRYPNGIAFLSLL 258 (395)
T ss_dssp CEEE--ECCSSCCCHHHHHHHHHHHHHTTC----EEE---ECCBCS-BCCTTCCCHHHHHHHHHHHGGGSSTTCEEECCB
T ss_pred cEEE--eccCCCcchhhHHHHHHHHHHcCC----cEE---EEECCC-CCCCCCCCHHHHHHHHHHHHHhCCCccEEEEec
Confidence 4444 56999999999 666666665322 443 667543 5678889999999999999998875 3344
Q ss_pred ccccccCCcccHHHHHHH-HHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccc--------cCcCCC
Q psy9416 82 EWEAQQSEWTRTRVSLDH-HEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLE--------SMAVPN 152 (344)
Q Consensus 82 d~E~~~~~~syT~dtL~~-lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~--------~~~~p~ 152 (344)
+++..-+||...+ |-. +++.|+ +. .||+|-|... +|-
T Consensus 259 p~~mryAGPrEai--~HAiiRkN~G----------------------------ct-hfIVGRDhAG~g~~~~~~d~Y--- 304 (395)
T 1r6x_A 259 PLAMRMSGDREAV--WHAIIRKNYG----------------------------AS-HFIVGRDHAGPGKNSKGVDFY--- 304 (395)
T ss_dssp CCBCCCCHHHHHH--HHHHHHHHTT----------------------------CS-EEEECTTTTCCCBCTTSCBSS---
T ss_pred chhhhhcCcHHHH--HHHHHHHHcC----------------------------Cc-eEEECCCCCCCCCCCcccccC---
Confidence 5555567776544 333 566663 44 8999999865 332
Q ss_pred CCCcchHHHHhhcC------CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c----ccccccHHHHHHHHHcCCCc
Q psy9416 153 LWSADDINHIAGHH------GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W----IKNEISSTYLRRALRRGDSI 221 (344)
Q Consensus 153 ~W~~~~~e~il~~~------~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~----~~~~ISST~IR~~l~~g~~i 221 (344)
.|+ +.++|+..+ .++.+...-+... ...+...+. | ....||+|+||+.|+.|..+
T Consensus 305 ~~~--~aq~i~~~~~~el~I~~v~f~~~~Y~~~------------~~~~~~~~~~p~~~~~~~~iSGT~~R~~L~~G~~p 370 (395)
T 1r6x_A 305 GPY--DAQELVESYKHELDIEVVPFRMVTYLPD------------EDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEI 370 (395)
T ss_dssp CTT--HHHHHHHHHHHHHTCEEEECCCEEEEGG------------GTEEEETTTSCSSSCCCBCCCHHHHHHHHHHTCCC
T ss_pred Ccc--hHHHHHHhchhccCceEEEecceEEecc------------cCeEEEcccCCCCccceEccCHHHHHHHHHCcCCC
Confidence 233 367787765 4555544332211 122223221 1 14689999999999999887
Q ss_pred -cCCCcHHHHHHHHH
Q psy9416 222 -KYLINDKVEQYIYQ 235 (344)
Q Consensus 222 -~~lVP~~V~~YI~~ 235 (344)
..+.+++|.+.+.+
T Consensus 371 P~~f~rpeV~~iL~~ 385 (395)
T 1r6x_A 371 PEWFSYPEVVKILRE 385 (395)
T ss_dssp CTTTSCHHHHHHHTT
T ss_pred CcccCCHHHHHHHHH
Confidence 77999999998777
No 35
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.83 E-value=3.1e-08 Score=96.87 Aligned_cols=184 Identities=16% Similarity=0.053 Sum_probs=96.9
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcc--cCCCCCCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVH--DKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~--~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
+++++ .-|.|||+|+||..+++.|++ .+ ..++ ++++.. .....+.+.+..+|.+|+... +-+.+.+-++
T Consensus 52 ~~~v~-~lG~FDg~H~GHq~lI~~a~~-~~---~~~~--Vms~~~~~vqrg~~~l~~~~~R~~~~~~~--GvD~vielpF 122 (357)
T 3gmi_A 52 DKIVC-DFTEYNPLHKGHKYALEKGKE-HG---IFIS--VLPGPLERSGRGIPYFLNRYIRAEMAIRA--GADIVVEGPP 122 (357)
T ss_dssp CCEEE-EECCCTTCCHHHHHHHHHHHT-SS---EEEE--EECCTTSBCTTSSBCSSCHHHHHHHHHHH--TCSEEEECCC
T ss_pred CCEEE-EEEecCccCHHHHHHHHHHHH-cC---CeEE--EEcCchHHhcCCCCcCCCHHHHHHHHHHC--CCCEEEEcCc
Confidence 45555 579999999999999999988 22 1222 344321 111123567899999999976 3333333333
Q ss_pred ccccCCcccHHHH-HHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHH
Q psy9416 84 EAQQSEWTRTRVS-LDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHI 162 (344)
Q Consensus 84 E~~~~~~syT~dt-L~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~i 162 (344)
....+...| ++. +..+ ..++ ++ ++++|+..-.+| .. -.+.+
T Consensus 123 ~~~~s~~~F-v~~~v~ll-~~l~----------------------------~~-~iv~G~~~~~~~------~~-~~~~i 164 (357)
T 3gmi_A 123 MGIMGSGQY-MRCLIKMF-YSLG----------------------------AE-IIPRGYIPEKTM------EK-VIDCI 164 (357)
T ss_dssp GGGSCHHHH-HHHHHHHH-HHHT----------------------------CC-EEEEEECCCHHH------HH-HHHHH
T ss_pred hhhCCHHHH-HHHHHHHH-HHcC----------------------------CC-EEEECCCCchhH------HH-HHHHH
Confidence 222211122 111 1122 2342 33 788898221111 11 01222
Q ss_pred hhcCCEEEEcCC--CCCchh-----hhhhhhh-------hhhcC-----CeEEEEeccccccccHHHHHHHHHcCC--Cc
Q psy9416 163 AGHHGIVVITRG--DTNPAK-----FIYQHDI-------LSKHM-----NKIIIVNEWIKNEISSTYLRRALRRGD--SI 221 (344)
Q Consensus 163 l~~~~~vVv~R~--g~~~~~-----~~~~~~~-------L~~~~-----~~i~~l~~~~~~~ISST~IR~~l~~g~--~i 221 (344)
-..+++.+-+.. |-+..+ ......+ +.++. ..+.++..+....+|+|.||+++..|. .|
T Consensus 165 ~~~~~~~~kp~~~~g~ey~~~~~~~l~~pn~il~~y~kai~~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~ 244 (357)
T 3gmi_A 165 NKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDI 244 (357)
T ss_dssp HTTCCEEEETTEEEETTTCCEEESCCCGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGT
T ss_pred hcccccccccchhccCcHHHHHHHhccCCChHHHHHHHHHHHhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHH
Confidence 222333221111 111100 0001111 22222 344555444334799999999999985 89
Q ss_pred cCCCcHHHHHHHHHc
Q psy9416 222 KYLINDKVEQYIYQH 236 (344)
Q Consensus 222 ~~lVP~~V~~YI~~~ 236 (344)
..+||+.+.+|+.+.
T Consensus 245 ~~lVP~~t~~~l~~~ 259 (357)
T 3gmi_A 245 KNMLPKTTLSILKEL 259 (357)
T ss_dssp GGGSCHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHH
Confidence 999999999999874
No 36
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=98.69 E-value=4.7e-08 Score=93.22 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=44.2
Q ss_pred eCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCcc--cCCC-CCCCCCHHHHHHHHHHHhhcCCCeEEecc
Q psy9416 12 VCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVH--DKYG-KKDLVSSKHRCEMVRLALEDSTWIKLSEW 83 (344)
Q Consensus 12 fgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~--~~~~-K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~ 83 (344)
..|+||++|.||..+++.|++..+..+. .++ ..|-|.. ..+. ...+.+.++|++|++.. . .+.+-++
T Consensus 4 tiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vV-vtFdphP~~l~~~~~~~l~~~~eR~~ll~~l-g---~~~v~~F 74 (293)
T 1mrz_A 4 SIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLI-YTISYPPEYFLPDFPGLLMTVESRVEMLSRY-A---RTVVLDF 74 (293)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHTCCCEE-EEESSCGGGGSTTCCCBSSCHHHHHHHHTTT-S---CEEEECH
T ss_pred EEeeCccccHHHHHHHHHHHHHHHHcCCeEEE-EEecCCHHHhCCCCCCCCCCHHHHHHHHHhC-C---CEEEEEh
Confidence 5799999999999999999987765433 233 1233321 1112 23478999999999863 2 4555555
No 37
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=98.67 E-value=2.9e-08 Score=96.54 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=48.8
Q ss_pred eEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcc---cCCCC-CCCCCHHHHHHHHHHHhhcCCCeEEe
Q psy9416 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVH---DKYGK-KDLVSSKHRCEMVRLALEDSTWIKLS 81 (344)
Q Consensus 8 ivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~---~~~~K-~~~~s~~~Rl~Ml~lAi~d~~~i~V~ 81 (344)
++++++|||||+|.||+.++++|++.++.. +|+-|+ .... ..+.+ ++..+.++|++|++ +++..+++.+.
T Consensus 199 ~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~--~LiVgV-~~d~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~vd~V~v~ 272 (341)
T 3elb_A 199 TVIYVAGAFDLFHIGHVDFLEKVHRLAERP--YIIAGL-HFDQEVNHYKGKNYPIMNLHERTLSVL-ACRYVSEVVIG 272 (341)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHTTSSSE--EEEEEE-ECHHHHHHHHCTTCCSSCHHHHHHHHH-TBTTCCEEEEE
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCCC--EEEEEE-ccCHhhHhhcCCCCCCCCHHHHHHHHH-HcCCCCCEEEC
Confidence 455699999999999999999999976622 333112 1110 11222 46789999999999 57777777763
No 38
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=98.34 E-value=4.8e-06 Score=79.81 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=48.2
Q ss_pred EEeCCccchhhHHHHHHHHHHHHHhcccCC-EEEEeeecCccc---CC----CCCCCCCHHHHHHHHHHHhhcCCCeEEe
Q psy9416 10 LFVCGSYNPPTNMHLRMFELARDHLFKLGH-TVCGGIMSPVHD---KY----GKKDLVSSKHRCEMVRLALEDSTWIKLS 81 (344)
Q Consensus 10 lifgGSFdP~H~GHl~ma~~A~~~l~~~~~-~Vv~g~~sP~~~---~~----~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~ 81 (344)
.+.-|+||-+|+||..+++.|++.....+. -++ .-|-|... .+ ..+.+.+.++|+++++.. +.+.+.+-
T Consensus 23 vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV-~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l--GVD~v~~~ 99 (308)
T 3op1_A 23 VVVLGYFDGIHKGHQELFRVANKAARKDLLPIVV-MTFNESPKIALEPYHPDLFLHILNPAERERKLKRE--GVEELYLL 99 (308)
T ss_dssp EEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEE-EEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH--TCCEEEEE
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHHhcCCceEE-EEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc--CCCEEEEe
Confidence 347899999999999999999998766554 333 13444221 11 113478999999999864 35555555
Q ss_pred ccc
Q psy9416 82 EWE 84 (344)
Q Consensus 82 d~E 84 (344)
++.
T Consensus 100 ~F~ 102 (308)
T 3op1_A 100 DFS 102 (308)
T ss_dssp CCC
T ss_pred cCC
Confidence 553
No 39
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.01 E-value=3.8e-05 Score=78.77 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=102.6
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcC-CC--eEEec
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS-TW--IKLSE 82 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~-~~--i~V~d 82 (344)
.++++ -=|+||+|+||..|++.|+..... .|+ +.|.-- +.|.+.++.+.|++..+..++.+ |. +.+..
T Consensus 164 ~~v~a--fqtrnP~Hr~H~~l~~~a~~~~~~---~ll---v~p~~g-~~k~~di~~~~R~~~~~~~~~~~~p~~~v~~~~ 234 (546)
T 2gks_A 164 DKIVA--FQTRNPMHRVHEELTKRAMEKVGG---GLL---LHPVVG-LTKPGDVDVYTRMRIYKVLYEKYYDKKKTILAF 234 (546)
T ss_dssp SCEEE--ECCSSCCCHHHHHHHHHHHHHHTS---EEE---ECCBCS-BCCTTSCCHHHHHHHHHHHHHHHSCTTTEEECB
T ss_pred CcEEE--EecCCCCcHHHHHHHHHHHHhcCC---cEE---EEeCcC-CCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEee
Confidence 34555 467999999999999999874332 453 556432 34667799999999999998874 43 44444
Q ss_pred ccc--ccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcC--CCCCCc-
Q psy9416 83 WEA--QQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAV--PNLWSA- 156 (344)
Q Consensus 83 ~E~--~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~--p~~W~~- 156 (344)
++. .-.||.- ..+ ..+++.|+ +. .||+|-|...--.. -..+|.
T Consensus 235 ~p~~m~~agpre--a~~ha~ir~n~G----------------------------~t-h~ivgrdhag~g~~~~~~~~Y~~ 283 (546)
T 2gks_A 235 LPLAMRMAGPRE--ALWHGIIRRNYG----------------------------AT-HFIVGRDHASPGKDSKGKPFYDP 283 (546)
T ss_dssp BCCBCCCCTHHH--HHHHHHHHHHTT----------------------------CS-EEEECTTTTCCCBCTTSCBSSCT
T ss_pred cCchhhccCchH--HHHHHHHHHhCC----------------------------CC-eEEECCCCCCCCCCCCCcccCCc
Confidence 443 3355531 122 23445553 44 67889876533210 001332
Q ss_pred chHHHHhhc------CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c----ccccccHHHHHHH-HHcCCCcc-C
Q psy9416 157 DDINHIAGH------HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W----IKNEISSTYLRRA-LRRGDSIK-Y 223 (344)
Q Consensus 157 ~~~e~il~~------~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~----~~~~ISST~IR~~-l~~g~~i~-~ 223 (344)
.+.++|+.. +..+.+.---+. +-.+.+..++. + ....||+|+||+. +..|..+. .
T Consensus 284 ~~a~~~~~~~~~~lgi~~v~fd~~~y~------------~~~g~~i~id~~~~~~~~~~~iSgt~iR~~~L~~g~~~p~~ 351 (546)
T 2gks_A 284 YEAQELFKKYEDEIGIKMVPFEELVYV------------PELDQYVEINEAKKRNLKYINISGTEIRENFLKQGRKLPEW 351 (546)
T ss_dssp THHHHHHHHHHHHHTCEEEECCCCEEE------------TTTTEEECSCC---------------CTHHHHTTTCCCCTT
T ss_pred chHHHHHHhcccccCceEEeccceEEE------------cCCCeEEeeeccCCCCceeeecchhhhhhhhhcCCCCCCcc
Confidence 234566543 223332211110 01133333331 1 1346899999999 99998763 3
Q ss_pred CCcHHHHHHHHHcC-----------CCCCCCCCCcc
Q psy9416 224 LINDKVEQYIYQHG-----------LYSVVESPHLE 248 (344)
Q Consensus 224 lVP~~V~~YI~~~~-----------LY~~~~~~k~~ 248 (344)
+..+.|.+-+++.. |-+.+-+|||+
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKST 387 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKST 387 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHH
Confidence 44466666666532 12457788988
No 40
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.80 E-value=0.00013 Score=75.15 Aligned_cols=192 Identities=17% Similarity=0.116 Sum_probs=108.4
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC--eEEecc
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW--IKLSEW 83 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~--i~V~d~ 83 (344)
.++++ -=|+||+|+||..|+..|++.... .|+ +.|.- .+.|.+.++.+.|++..+..++.+|. +.+..+
T Consensus 191 ~~v~a--fqtrnP~Hr~H~~l~~~a~~~~~~---~ll---v~pl~-g~~k~~di~~~~R~~~~~~~~~~~p~~~v~l~~~ 261 (573)
T 1m8p_A 191 SRVVA--FQTRNPMHRAHRELTVRAARSRQA---NVL---IHPVV-GLTKPGDIDHFTRVRAYQALLPRYPNGMAVLGLL 261 (573)
T ss_dssp CSEEE--ECCSSCCCHHHHHHHHHHHHHTTC---EEE---ECCBC-CCCCTTCHHHHHHHHHHHHHGGGSSTTSEEECBB
T ss_pred CeEEE--EeeCCCcchhhHHHHHHHHHhcCC---cEE---EEeCC-CCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 34444 467999999999999988876332 443 56643 23467779999999999999988765 334333
Q ss_pred cc--ccCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcC---CCCCCcch
Q psy9416 84 EA--QQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAV---PNLWSADD 158 (344)
Q Consensus 84 E~--~~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~---p~~W~~~~ 158 (344)
+. .-.||.-.+.- ..+++.|+ +. .|++|-|...--.. ...|...+
T Consensus 262 p~~m~~agprea~~h-a~ir~n~G----------------------------~t-h~ivgrdhag~g~~~~~~~~Y~~~~ 311 (573)
T 1m8p_A 262 GLAMRMGGPREAIWH-AIIRKNHG----------------------------AT-HFIVGRDHAGPGSNSKGEDFYGPYD 311 (573)
T ss_dssp CCCCCCCHHHHHHHH-HHHHHHHT----------------------------CS-EEEECTTTTCCCCCTTCCCSSCTTH
T ss_pred CchhhccCchHHHHH-HHHHHHCC----------------------------CC-eEEECCCCCCCCCCCCCcccCCcch
Confidence 32 22344211111 33455663 44 78889886433210 00233323
Q ss_pred HHHHhhc------CCEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c---ccccccHHHHHHHHHcCCCcc-CCCcH
Q psy9416 159 INHIAGH------HGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W---IKNEISSTYLRRALRRGDSIK-YLIND 227 (344)
Q Consensus 159 ~e~il~~------~~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~---~~~~ISST~IR~~l~~g~~i~-~lVP~ 227 (344)
.++|+.. +..+.+.---+... .+.+..++. + ....||.|+||+.+..|..+. ....+
T Consensus 312 a~~i~~~~~~~l~i~~v~fd~~~y~~~------------~g~~i~id~~~~~~~~~~iSgt~ir~~l~~g~~~p~w~~~~ 379 (573)
T 1m8p_A 312 AQHAVEKYKDELGIEVVEFQMVTYLPD------------TDEYRPVDQVPAGVKTLNISGTELRRRLRSGAHIPEWFSYP 379 (573)
T ss_dssp HHHHHHHHHHHHCCEEEECCCCCBBTT------------TTBCCCSSSSCTTSCCBCCCHHHHHHHHHHTCCCCTTTSCH
T ss_pred HHHHHHhhhhhcCceeEeccceEEEcC------------CCcEEecccCCCCceeecCChHHHHHHHhccCCCCcccccc
Confidence 5566643 23333332211110 122222221 1 135789999999999987653 33335
Q ss_pred HHHHHHHHcC-----------CCCCCCCCCcc
Q psy9416 228 KVEQYIYQHG-----------LYSVVESPHLE 248 (344)
Q Consensus 228 ~V~~YI~~~~-----------LY~~~~~~k~~ 248 (344)
.|.+-.++.. |=+-+-+|||+
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKST 411 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDA 411 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHH
Confidence 6666555433 11456788988
No 41
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.21 E-value=0.0081 Score=62.63 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=105.1
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCC--EEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhc--CCC--eE
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGH--TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALED--STW--IK 79 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~--~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d--~~~--i~ 79 (344)
.++++ | =|-||+|+||-.|++.|++.+...|+ -++ ++.|.- .+.|.+.++.+-|++-.+..++. .|. +.
T Consensus 413 ~~Vva-f-qtrNP~HraHe~l~~~a~~~~~d~g~~~~~l--ll~pl~-G~tk~~di~~~~r~~~~~~~~~~~y~p~~~~~ 487 (630)
T 1x6v_B 413 DAVSA-F-QLRNPVHNGHALLMQDTHKQLLERGYRRPVL--LLHPLG-GWTKDDDVPLMWRMKQHAAVLEEGVLNPETTV 487 (630)
T ss_dssp SEEEE-E-EESSCCCHHHHHHHHHHHHHHHHHTCSSEEE--EEEEBC-SCCCTTSCCHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CeEEE-E-ecCCCccHHHHHHHHHHHHHHHhhccCCCcE--EEEeCc-CCCCCCCCCHHHHHHHHHHHHHcCCCCCcceE
Confidence 35555 3 58999999999999999875322111 222 355643 35578889999999999988885 443 55
Q ss_pred Eecccc--ccCCcccHHHHHH-HHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcC--CCCC
Q psy9416 80 LSEWEA--QQSEWTRTRVSLD-HHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAV--PNLW 154 (344)
Q Consensus 80 V~d~E~--~~~~~syT~dtL~-~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~--p~~W 154 (344)
+.-+.. .-+||.-. .+- -+++.|+ +. .||+|-|...--.. -..|
T Consensus 488 l~~~p~~mryaGPrEa--~~hai~rkN~G----------------------------ct-h~IVGrdhAG~g~~~~~~~~ 536 (630)
T 1x6v_B 488 VAIFPSPMMYAGPTEV--QWHCRARMVAG----------------------------AN-FYIVGRDPAGMPHPETGKDL 536 (630)
T ss_dssp ECCBCCCCCCCHHHHH--HHHHHHHHHTT----------------------------CS-EEEECSSTTCCBCTTTCSBS
T ss_pred EeeccchhhhcCcHHH--HHHHHHHHhCC----------------------------CC-eEEECCCCCCCCCCCCcccc
Confidence 555544 33455321 122 2455553 44 79999997644310 0024
Q ss_pred Cc-chHHHHhhcC----CE--EEEcCCCCCchhhhhhhhhhhhcCCeEEEEeccc----cccccHHHHHHHHHcCCCc-c
Q psy9416 155 SA-DDINHIAGHH----GI--VVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWI----KNEISSTYLRRALRRGDSI-K 222 (344)
Q Consensus 155 ~~-~~~e~il~~~----~~--vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~~~----~~~ISST~IR~~l~~g~~i-~ 222 (344)
|. .+.++|+..+ ++ +.+.---|. .+ ...+...+ |. ...||.|++|+.|+.|..+ .
T Consensus 537 Y~~~~aq~i~~~~~~~l~i~~~~~~~~~Y~-----------~~-~~~~~~~~-p~~~~~~~~isgt~~R~~l~~G~~pP~ 603 (630)
T 1x6v_B 537 YEPSHGAKVLTMAPGLITLEIVPFRVAAYN-----------KK-KKRMDYYD-SEHHEDFEFISGTRMRKLAREGQKPPE 603 (630)
T ss_dssp SCTTHHHHHHHHCTTCTTCEEEECCCEEEE-----------TT-TTEEEECC-STTGGGEECCCHHHHHHHHHTTCCCCT
T ss_pred CCcchHHHHHhcCcccCCceEEEcceeEEE-----------cc-cCceeccC-CCCCceeeecCHHHHHHHHHCCCCCCc
Confidence 43 3566777642 11 111110000 00 11222222 11 3579999999999999755 4
Q ss_pred CCCcHHHHHHHHH
Q psy9416 223 YLINDKVEQYIYQ 235 (344)
Q Consensus 223 ~lVP~~V~~YI~~ 235 (344)
.+.-|+|.+-+.+
T Consensus 604 ~f~rpev~~~l~~ 616 (630)
T 1x6v_B 604 GFMAPKAWTVLTE 616 (630)
T ss_dssp TSSCHHHHHHHHH
T ss_pred ccCcHHHHHHHHH
Confidence 5777888877765
No 42
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.20 E-value=0.00086 Score=68.91 Aligned_cols=204 Identities=8% Similarity=-0.013 Sum_probs=108.4
Q ss_pred CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCC--eE--Ee
Q psy9416 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTW--IK--LS 81 (344)
Q Consensus 6 ~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~--i~--V~ 81 (344)
.++++ | =|-||+|+||.+++..|..... + -| ++.|.- .+.|.+.++.+-|++-.+.+++.+|. +. +-
T Consensus 164 ~~v~a-f-qtrnp~Hrah~~~~~~~~~~~~-~--~l---ll~pl~-g~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~~~ 234 (552)
T 3cr8_A 164 RRIIA-W-QARQPMHRAQYEFCLKSAIENE-A--NL---LLHPQV-GGDITEAPAYFGLVRSFLAIRDRFPAATTQLSLL 234 (552)
T ss_dssp CSEEE-E-CCSSCCCHHHHHHHHHHHHHTT-C--EE---EECCBC-CCCTTTCTTHHHHHHHHHHHGGGSCGGGEEECBB
T ss_pred CceEE-E-ecCCCCchHHHHHHHHHHHhcC-C--eE---EEEecc-CCCCCCCCCHHHHHHHHHHHHHhCCCccEEEeec
Confidence 45666 5 8899999999999888875333 2 34 366652 34577889999999999999988865 33 33
Q ss_pred ccccccCCcccHHHHH-HHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcC--CCCCCcc-
Q psy9416 82 EWEAQQSEWTRTRVSL-DHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAV--PNLWSAD- 157 (344)
Q Consensus 82 d~E~~~~~~syT~dtL-~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~--p~~W~~~- 157 (344)
+++..-.||.-. .+ ..+++.|+ +. .||+|-|..---.. -..||.+
T Consensus 235 p~~m~~agprea--~~ha~~r~n~G----------------------------~t-h~ivGrdhag~g~~~~~~~~Y~~~ 283 (552)
T 3cr8_A 235 PAPPPEASGRAL--LLRAIVARNFG----------------------------CS-LLIAGGEHQPDGGDCRRGEDLTQN 283 (552)
T ss_dssp CSCCCCSCSHHH--HHHHHHHHHHT----------------------------CS-EEEC--------------------
T ss_pred chhhcccCcHHH--HHHHHHHHhCC----------------------------CC-eeeeCCCCCCCCCCCCccccCCcc
Confidence 444445666321 12 23566664 34 78999986532100 0013321
Q ss_pred hHHHHhhcC----CEEEEcCCCCCchhhhhhhhhhhhcCCeEEEEec-c---ccccccHHHHHHHHHcCCCc-cCCCcHH
Q psy9416 158 DINHIAGHH----GIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNE-W---IKNEISSTYLRRALRRGDSI-KYLINDK 228 (344)
Q Consensus 158 ~~e~il~~~----~~vVv~R~g~~~~~~~~~~~~L~~~~~~i~~l~~-~---~~~~ISST~IR~~l~~g~~i-~~lVP~~ 228 (344)
+.++|+..+ ++-++.=+.+.. .. -.+.+..++. + ....+|.|+||+.+++|..+ ..+.-+.
T Consensus 284 ~a~~i~~~~~~~l~i~pv~f~~~~y---------~~-~~g~~~~~d~~~~~~~~~~isgt~ir~~Lr~G~~~p~~f~~pe 353 (552)
T 3cr8_A 284 RVDPSVAERAEKIGVRLIAYPRMVY---------VE-DRAEHLPEAEAPQGARLLTLSGEEFQRRMRAGLKIPEWYSFPE 353 (552)
T ss_dssp --CCSSHHHHHHHTCEEECCCCEEE---------EG-GGTEEEEGGGSCTTCCEECCCHHHHHHHHTTTCCCCTTTSCHH
T ss_pred hHHHHHHhhhhhcCCeeeeccceEE---------ec-CCCeEEecccCCCCcccccCCHHHHHHHHhcCCCCCccccccc
Confidence 223343332 221111100000 00 0123333332 1 13578999999999999765 3334366
Q ss_pred HHHHHHHc-----------CCCCCCCCCCcccchhhhhhhhhhccCCC
Q psy9416 229 VEQYIYQH-----------GLYSVVESPHLEVSPILDLLSNLNNNFLP 265 (344)
Q Consensus 229 V~~YI~~~-----------~LY~~~~~~k~~~~~~~~~~~~l~~~~~~ 265 (344)
|.+-+++. .|-+..-+|||+ +..-|+..+.+
T Consensus 354 V~~vLR~~~~~~~~~G~iI~LiG~sGSGKST------Lar~La~~L~~ 395 (552)
T 3cr8_A 354 VLAELHRQTPPRERQGFTVFFTGLSGAGKST------LARALAARLME 395 (552)
T ss_dssp HHHHHHHHSCCGGGSCEEEEEEESSCHHHHH------HHHHHHHHHHT
T ss_pred hhhhhhhhcccccccceEEEEECCCCChHHH------HHHHHHHhhcc
Confidence 66655542 122456688988 66666655443
No 43
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=95.33 E-value=0.02 Score=53.93 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=39.9
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHH
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRL 70 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~l 70 (344)
+.++ |-|+||=+|.||+.+++.|++..+. -|+..+.-|....+.. +.+.+.++|+++|+.
T Consensus 22 ~~V~-~vgtfdgLH~GH~sLI~~A~~~ad~---vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~ 84 (280)
T 2ejc_A 22 KTIG-FVPTMGYLHEGHLSLVRRARAENDV---VVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEK 84 (280)
T ss_dssp CCEE-EEEECSCCCHHHHHHHHHHHHHSSE---EEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHT
T ss_pred CEEE-EEcCCccccHHHHHHHHHHHHhCCE---EEEEEeCChHHhcCCcccccCCCCHHHHHHHHHH
Confidence 3444 3489999999999999999997663 3432222343332221 235778999999875
No 44
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=84.55 E-value=1.7 Score=40.89 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++..+. -|+-.+.-|....+.. +-+.+.++++++|+.+
T Consensus 34 lH~GH~~LI~~a~~~a~~---vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 34 LHDGHLTMVRESVSTNDI---TIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp CCHHHHHHHHHHHTTSSE---EEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCE---EEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 999999999999987652 3332233343333221 2367889999999864
No 45
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=83.40 E-value=2.2 Score=39.85 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEe-eecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGG-IMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g-~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++..+ .||.. +.-|....+.+ +.+.+.++|+++|+.+
T Consensus 28 lH~GH~~Li~~A~~~a~----~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~ 80 (276)
T 1v8f_A 28 LHRGHLALVERARRENP----FVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA 80 (276)
T ss_dssp CCHHHHHHHHHHHHHCS----EEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC----EEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC
Confidence 99999999999999764 44322 22233332221 2367889999999863
No 46
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=78.35 E-value=2.7 Score=39.80 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHH-HhcccCCEEE-EeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARD-HLFKLGHTVC-GGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~-~l~~~~~~Vv-~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
+|.||+.+++.|++ ..+ .|| -.++-|....+.. +-+.+.++++++|+.+
T Consensus 44 LH~GH~sLI~~A~~~~a~----~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~ 97 (301)
T 3cov_A 44 LHEGHLALVRAAKRVPGS----VVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97 (301)
T ss_dssp CCHHHHHHHHHHHTSTTE----EEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcCC----EEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 99999999999998 654 443 2223343333322 2367889999999864
No 47
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=73.41 E-value=7.6 Score=36.92 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
.|.||+.+++.|++.++. -|+-.++-|....+.. +-+-+.+..+++|+.+
T Consensus 54 LH~GHlsLi~~A~~~~d~---vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 106 (314)
T 3inn_A 54 LHKGHLELVRRARVENDV---TLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314)
T ss_dssp CCHHHHHHHHHHHHHCSE---EEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhCCE---EEEEECCChhhcCCCccccccCCCHHHHHHHHHhC
Confidence 999999999999997653 2333345565554432 3356788889998865
No 48
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=68.58 E-value=5.6 Score=37.33 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=40.0
Q ss_pred EEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 9 vlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
|+ |=.|..=.|.||+.+++.|++..+. -|+-.++-|....+.. +-+.+.+.++++|+.+
T Consensus 24 ig-~VPTMG~LH~GH~sLi~~A~~~~d~---vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~ 85 (283)
T 3uk2_A 24 TA-FVPTMGNLHEGHLSLMRLARQHGDP---VVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE 85 (283)
T ss_dssp CE-EEEECSSCCHHHHHHHHHHHTTCSS---EEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT
T ss_pred EE-EECCCCcccHHHHHHHHHHHHhCCE---EEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc
Confidence 44 4567777999999999999987653 3433344455443322 3357889999998854
No 49
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=54.16 E-value=12 Score=35.06 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
.|-||+.+++.|++.++. -|+..|+-|..+.+.. +-+-+.+.=+++|+.+
T Consensus 36 LH~GHlsLv~~Ar~~~d~---vVVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~ 88 (287)
T 3q12_A 36 LHEGHMTLVDEAKTRADV---VVVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH 88 (287)
T ss_dssp CCHHHHHHHHHHHTTSSE---EEEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCE---EEEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 999999999999987653 2333344565554422 2234556667777754
No 50
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=48.55 E-value=31 Score=32.14 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=58.6
Q ss_pred ceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCCCCCCCHHHHHHHHHHHhhcCCCeEEeccccc
Q psy9416 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQ 86 (344)
Q Consensus 7 kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K~~~~s~~~Rl~Ml~lAi~d~~~i~V~d~E~~ 86 (344)
..+++.||..|.. +.-.+.+...+..+..+.+|+ |+|+... .++.=.+..+.+++....-.|..+++.
T Consensus 27 g~l~iiGGgedk~--~~~~i~~~~v~lagg~~~~I~---~IptAs~-------~~~~~~~~~~~~f~~lG~~~v~~L~i~ 94 (291)
T 3en0_A 27 PAILIIGGAEDKV--HGREILQTFWSRSGGNDAIIG---IIPSASR-------EPLLIGERYQTIFSDMGVKELKVLDIR 94 (291)
T ss_dssp CCEEEECSSCCSS--SCCHHHHHHHHHTTGGGCEEE---EECTTCS-------SHHHHHHHHHHHHHHHCCSEEEECCCC
T ss_pred ceEEEEECCCCcc--ChHHHHHHHHHHcCCCCCeEE---EEeCCCC-------ChHHHHHHHHHHHHHcCCCeeEEEEec
Confidence 3455579998743 223456666666654323775 7786431 122223344556655543244444442
Q ss_pred cCCcccHHHHHHHHHHHHhhhhhcccccccccccccccCCCCCCCCceeEEEEEeccccccCcCCCCCCcchHHHHhh
Q psy9416 87 QSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAG 164 (344)
Q Consensus 87 ~~~~syT~dtL~~lk~~~~~~~~~~P~~~~~~p~~~~~~~~~~~~~~~~l~fL~GsD~l~~~~~p~~W~~~~~e~il~ 164 (344)
.......-+.++.++ ..+..|+-|.|++.-+. .|++....+.++
T Consensus 95 ~r~~a~~~~~~~~l~-------------------------------~ad~I~v~GGnt~~l~~---~l~~t~l~~~L~ 138 (291)
T 3en0_A 95 DRAQGDDSGYRLFVE-------------------------------QCTGIFMTGGDQLRLCG---LLADTPLMDRIR 138 (291)
T ss_dssp SGGGGGCHHHHHHHH-------------------------------HCSEEEECCSCHHHHHH---HHTTCHHHHHHH
T ss_pred CccccCCHHHHHHHh-------------------------------cCCEEEECCCCHHHHHH---HHHhCCHHHHHH
Confidence 111011112233332 26789999999987776 687755555443
No 51
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=46.14 E-value=23 Score=32.13 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=18.8
Q ss_pred CCccc-CceEEEeCCccchhhHHHHHHHHHHHHHhcccCCEEE
Q psy9416 1 MSSAA-IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVC 42 (344)
Q Consensus 1 ~~~~~-~kivlifgGSFdP~H~GHl~ma~~A~~~l~~~~~~Vv 42 (344)
||+.| ||++++ .+. .-||...+....+.+...|.+|.
T Consensus 1 mM~~m~mkIl~~-~~~----~gG~~~~~~~la~~L~~~G~~V~ 38 (364)
T 1f0k_A 1 MMSGQGKRLMVM-AGG----TGGHVFPGLAVAHHLMAQGWQVR 38 (364)
T ss_dssp ------CEEEEE-CCS----SHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCCcEEEEE-eCC----CccchhHHHHHHHHHHHcCCEEE
Confidence 78776 777765 432 24998865555555555555664
No 52
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=44.77 E-value=24 Score=33.09 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 19 PTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 19 ~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
.|-||+.|++.|++ ++. -|+-.|+-|..+.+.. +-+-+.+.=+++|+.+
T Consensus 36 LH~GHlsLv~~Ar~-~d~---VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (285)
T 3mxt_A 36 LHDGHLSLVKHAKT-QDK---VIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN 87 (285)
T ss_dssp CCHHHHHHHHHHTT-SSE---EEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHh-CCE---EEEEeccCccccCCchhhhcCCCCHHHHHHHHHHC
Confidence 89999999999998 553 2333345566555532 2345666667777754
No 53
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=44.35 E-value=18 Score=33.57 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=33.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCEEEEeeecCcccCCCC---CCCCCHHHHHHHHHHH
Q psy9416 15 SYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRCEMVRLA 71 (344)
Q Consensus 15 SFdP~H~GHl~ma~~A~~~l~~~~~~Vv~g~~sP~~~~~~K---~~~~s~~~Rl~Ml~lA 71 (344)
|--=.|-||+.|++.|++..+. -|+-.++-|....+.. +-+-+.+.=+++|+.+
T Consensus 31 TMGaLH~GHlsLv~~Ar~~~d~---vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (264)
T 3n8h_A 31 TMGALHNGHISLIKKAKSENDV---VIVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL 87 (264)
T ss_dssp ECSSCCHHHHHHHHHHHHHCSE---EEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhCCE---EEEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 3345799999999999997763 2333344465554422 2234555566677654
Done!