RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9416
(344 letters)
>gnl|CDD|185681 cd09286, NMNAT_Eukarya, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, Eukaryotic.
Nicotinamide/nicotinate mononucleotide (NMN/
NaMN)adenylyltransferase (NMNAT). NMNAT represents the
primary bacterial and eukaryotic adenylyltransferases
for nicotinamide-nucleotide and for the deamido form,
nicotinate nucleotide. It is an indispensable enzyme in
the biosynthesis of NAD(+) and NADP(+).
Nicotinamide-nucleotide adenylyltransferase synthesizes
NAD via the salvage pathway, while nicotinate-nucleotide
adenylyltransferase synthesizes the immediate precursor
of NAD via the de novo pathway. Human NMNAT displays
unique dual substrate specificity toward both NMN and
NaMN, and can participate in both de novo and salvage
pathways of NAD synthesis. This subfamily consists
strictly of eukaryotic members and includes secondary
structural elements not found in all NMNATs.
Length = 225
Score = 300 bits (771), Expect = e-102
Identities = 115/232 (49%), Positives = 150/232 (64%), Gaps = 9/232 (3%)
Query: 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLG-HTVCGGIMSPVHDKYGKKDLVSSKHRCEM 67
VL CGS+NP TNMHLRMFELARDHL + G + V GGI+SPV+D YGKK L S+KHR M
Sbjct: 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAM 61
Query: 68 VRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHN 127
RLA++ S WI++ +WE+ Q EW RT L HH +E+N + V
Sbjct: 62 CRLAVQSSDWIRVDDWESLQPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLD------- 114
Query: 128 GSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDI 187
RR++++M LCG D+LES +P LW D+ I G G+VV+ R ++P FI DI
Sbjct: 115 -GSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLVVVERTGSDPENFIASSDI 173
Query: 188 LSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
L K+ + I +V +WI N+ISST +RRALRRG S+KYL+ D V +YI QH LY
Sbjct: 174 LRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVKYLLPDPVIEYIEQHQLY 225
>gnl|CDD|178531 PLN02945, PLN02945, nicotinamide-nucleotide
adenylyltransferase/nicotinate-nucleotide
adenylyltransferase.
Length = 236
Score = 230 bits (589), Expect = 6e-75
Identities = 95/232 (40%), Positives = 132/232 (56%), Gaps = 19/232 (8%)
Query: 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMV 68
VL GS+NPPT MHLRMFELARD L G+ V GG MSPV+D Y KK L S++HR +M
Sbjct: 24 VLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMC 83
Query: 69 RLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNG 128
+LA EDS +I + WEA+QS + RT L + + N
Sbjct: 84 QLACEDSDFIMVDPWEARQSTYQRTL-------TVLARVETSLNNN------------GL 124
Query: 129 SPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDIL 188
+ ++VM LCG D+LES + P +W D + I +G+V I R + K + Q +IL
Sbjct: 125 ASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICRDYGVVCIRREGQDVEKLVSQDEIL 184
Query: 189 SKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240
+++ I++V++ + N ISST +R + RG S+KYL D V YI +HGLY
Sbjct: 185 NENRGNILVVDDLVPNSISSTRVRECISRGLSVKYLTPDGVIDYIKEHGLYM 236
>gnl|CDD|232994 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
adenylyltransferase. This model represents the
predominant bacterial/eukaryotic adenylyltransferase for
nicotinamide-nucleotide, its deamido form nicotinate
nucleotide, or both. The first activity,
nicotinamide-nucleotide adenylyltransferase (EC
2.7.7.1), synthesizes NAD by the salvage pathway, while
the second, nicotinate-nucleotide adenylyltransferase
(EC 2.7.7.18) synthesizes the immediate precursor of NAD
by the de novo pathway. In E. coli, NadD activity is
biased toward the de novo pathway while salvage activity
is channeled through the multifunctional NadR protein,
but this division of labor may be exceptional. The given
name of this model, nicotinate (nicotinamide) nucleotide
adenylyltransferase, reflects the lack of absolute
specificity with respect to substrate amidation state in
most species [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridine nucleotides].
Length = 193
Score = 134 bits (340), Expect = 2e-38
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 36/227 (15%)
Query: 13 CGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLAL 72
GS++P HL + E A DHL P Y SS HR M++LA+
Sbjct: 3 GGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEA---ASSHHRLAMLKLAI 59
Query: 73 EDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRR 132
ED+ ++ ++E ++ + T +L H ++
Sbjct: 60 EDNPKFEVDDFEIKRGGPSYTIDTLKHL----------------------KKKYPDVE-- 95
Query: 133 KIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHM 192
+ F+ G D L S LW D + +V++ R K + + IL H
Sbjct: 96 ---LYFIIGADALRSFP---LWK--DWQELLELVHLVIVPRPGYTLDKALLEKAILRMHH 147
Query: 193 NKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
+ +++ + ISST +R+ +R+G SI+YL+ D V +YI QHGLY
Sbjct: 148 GNLTLLHN-PRVPISSTEIRQRIRQGKSIEYLLPDPVIKYIKQHGLY 193
>gnl|CDD|223985 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
[Coenzyme metabolism].
Length = 197
Score = 98.5 bits (246), Expect = 1e-24
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 40/234 (17%)
Query: 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRC 65
+K + GS++PP HL + E A D L L + + SPV KK+L S++HR
Sbjct: 2 MKKIALFGGSFDPPHYGHLLIAEEALDQL-GLDKVI--FLPSPVPPHKKKKELASAEHRL 58
Query: 66 EMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQ 125
M+ LA+ED+ ++S+ E ++ + T +L+H +++
Sbjct: 59 AMLELAIEDNPRFEVSDREIKRGGPSYTIDTLEH------------------LRQEYG-- 98
Query: 126 HNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQH 185
P ++ F+ G D L S+ W D + + VV R +
Sbjct: 99 ----PDVEL--YFIIGADNLASLP---KW--YDWDELLKLVTFVVAPRPGYGELELSLL- 146
Query: 186 DILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
II+++ + +ISST +R +RRG S+ YL+ D V YI + GLY
Sbjct: 147 ----SSGGAIILLDL-PRLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGLY 195
>gnl|CDD|234611 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase;
Provisional.
Length = 203
Score = 79.5 bits (197), Expect = 1e-17
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 43/231 (18%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHT---VCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
G+++PP HL + E A + L G P H +K L +HR M+ L
Sbjct: 11 GTFDPPHYGHLAIAEEAAER-LGLDEVWFLPNPG---PPHKP--QKPLAPLEHRLAMLEL 64
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
A+ D+ +S+ E ++ + T +L L RAR+
Sbjct: 65 AIADNPRFSVSDIELERPGPSYTIDTLRE--------L-----------RARYPDV---- 101
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITR-GDTNPAKFIYQHDILS 189
+++F+ G D L + P W I VV+ R G A + L
Sbjct: 102 ----ELVFIIGADALAQL--PR-W--KRWEEILDLVHFVVVPRPGYPLEALALPALQQLL 152
Query: 190 KHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240
+ I +++ ISST +R ++ G I+YL+ + V YI +HGLY
Sbjct: 153 EAAGAITLLDV-PLLAISSTAIRERIKEGRPIRYLLPEAVLDYIEKHGLYR 202
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase. This family
includes: Cholinephosphate cytidylyltransferase.
Glycerol-3-phosphate cytidylyltransferase.
Length = 148
Score = 77.9 bits (192), Expect = 2e-17
Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 56/204 (27%)
Query: 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
G+++P HLR+ E A++ SP D L S++ R EM+ L
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKN---LFSAEERLEMLEL 57
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
ALE +++ ++E
Sbjct: 58 ALEVDPNLEVDDFEDL-------------------------------------------- 73
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSK 190
V F+ G D L ++ + + IVV+ R + ++ + L K
Sbjct: 74 ----DVYFIIGADALVNLRGWRGVT-----ELLPEFQIVVVNRPLDYGLETVFLREELDK 124
Query: 191 HMNKIIIVNEWIKNEISSTYLRRA 214
+ I++ + N+ISST +R
Sbjct: 125 YPLGKIVIPDLPYNDISSTEIRER 148
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
adenylyltransferase. Nicotinamide/nicotinate
mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT).
NMNAT represents the primary bacterial and eukaryotic
adenylyltransferases for nicotinamide-nucleotide and for
the deamido form, nicotinate nucleotide. It is an
indispensable enzyme in the biosynthesis of NAD(+) and
NADP(+). Nicotinamide-nucleotide adenylyltransferase
synthesizes NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both de
novo and salvage pathways of NAD synthesis.
Length = 192
Score = 76.9 bits (190), Expect = 1e-16
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 45/229 (19%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVH---DKYGKKDLVSSKHRCEMVRL 70
GS++PP HL + E A + L V ++ P K S +HR EM++L
Sbjct: 6 GSFDPPHLGHLAIAEEALEE-LGLDR-V---LLLPSANPPHK--PPKPASFEHRLEMLKL 58
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
A+ED+ ++S+ E ++ + T +L+ L ++ P
Sbjct: 59 AIEDNPKFEVSDIEIKRDGPSYTIDTLEE----LRERY---------------------P 93
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSK 190
++ F+ G D L + W D + +VV R P + +L
Sbjct: 94 NAEL--YFIIGSDNLIRL---PKWY--DWEELLSLVHLVVAPRPG-YPIEDASLEKLLLP 145
Query: 191 HMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
I++ N + ISST +R L+ G SI+YL+ V YI +HGLY
Sbjct: 146 GGRIILLDNPLL--NISSTEIRERLKNGKSIRYLLPPAVADYIKEHGLY 192
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
domain. Cytidylyltransferase-like domain. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate. Protein families that contain at least
one copy of this domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase,
phosphocholine cytidylyltransferase, lipopolysaccharide
core biosynthesis protein KdtB, the bifunctional
protein NadR, and a number whose function is unknown.
Length = 143
Score = 44.4 bits (105), Expect = 1e-05
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGK---KDLVSSKHRC 65
V + G + P HL++ + A + + V + K KD S R
Sbjct: 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVI------IIIVSNPPKKKRNKDPFSLHERV 54
Query: 66 EMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLD 98
EM++ L+D +K+ + + + V +
Sbjct: 55 EMLKEILKD--RLKVVPVDFPEVKILLAVVFIL 85
Score = 30.9 bits (70), Expect = 0.50
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 142 VDVLESMAVPNLWSADDINHIAGHHGIVVITRG--DTNPAKFIYQHDILSKHMNKI-IIV 198
V ++ V L + I I G + G Y D L + I I+
Sbjct: 67 VVPVDFPEVKILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKD-LKELFLDIEIVE 125
Query: 199 NEWIK--NEISSTYLRRA 214
++ +ISST +R
Sbjct: 126 VPRVRDGKKISSTLIREL 143
>gnl|CDD|235947 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 41.5 bits (98), Expect = 4e-04
Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 78/247 (31%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHL--------------FKLGHTVCGGIMSPVHDK 52
K +F GS++P H+ + + A L FK
Sbjct: 2 KIAIF-GGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKK--------------- 45
Query: 53 YGKKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQC 112
K+ + +HR M++LAL++ +++S++E ++ + T ++ + +
Sbjct: 46 --KQKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKK---------- 93
Query: 113 TNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVIT 172
D ++ F+ G D LE W +I I IVV
Sbjct: 94 KYPND-----------------EIYFIIGSDNLEKF---KKW--KNIEEILKKVQIVVFK 131
Query: 173 RGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQY 232
R N K L K+ ++++ ISST +R+G+ + ++ KV Y
Sbjct: 132 RKK-NINKKN-----LKKY--NVLLLKNKN-LNISST----KIRKGNLLGK-LDPKVNDY 177
Query: 233 IYQHGLY 239
I ++ LY
Sbjct: 178 INENFLY 184
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain. Protein
families that contain at least one copy of this domain
include citrate lyase ligase, pantoate-beta-alanine
ligase, glycerol-3-phosphate cytidyltransferase,
ADP-heptose synthase, phosphocholine
cytidylyltransferase, lipopolysaccharide core
biosynthesis protein KdtB, the bifunctional protein
NadR, and a number whose function is unknown. Many of
these proteins are known to use CTP or ATP and release
pyrophosphate.
Length = 66
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 9 VLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMV 68
V+FV G+++P HL + E A++ +L V G V+ + + S + R EM+
Sbjct: 2 VIFV-GTFDPFHLGHLDLLERAKELFDEL--IVGVGSDQFVN-PLKGEPVFSLEERLEML 57
Query: 69 RLALED 74
+
Sbjct: 58 KALKYV 63
>gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 174
Score = 32.4 bits (74), Expect = 0.21
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 179 AKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGL 238
AKF +I + ++ E + I ST +R AL+ G I +L V + + +H L
Sbjct: 114 AKFYKADEITQRW--TVMACPEKVP--IRSTDIRNALQNGKDISHLTTPGVARLLKEHQL 169
Query: 239 Y 239
Y
Sbjct: 170 Y 170
>gnl|CDD|233444 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
adenylyltransferase, bacterial. This model describes
pantetheine-phosphate adenylyltransferase, the
penultimate enzyme of coenzyme A (CoA) biosynthesis in
bacteria. It does not show any strong homology to
eukaryotic enzymes of coenzyme A biosynthesis. This
protein was previously designated KdtB and postulated
(because of cytidyltransferase homology and proximity
to kdtA) to be an enzyme of LPS biosynthesis, a
cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
acid. However, no activity toward that compound was
found with either CTP or ATP. The phylogenetic
distribution of this enzyme is more consistent with
coenzyme A biosynthesis than with LPS biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 155
Score = 29.9 bits (68), Expect = 1.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
GS++P TN HL + + A LF V KK L S + R E+++ A +
Sbjct: 6 GSFDPVTNGHLDIIKRAAA-LFDEVIVA-------VAKNPSKKPLFSLEERVELIKDATK 57
Query: 74 DSTWIKLSEWE 84
+++ ++
Sbjct: 58 HLPNVRVDVFD 68
>gnl|CDD|223741 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
metabolism].
Length = 159
Score = 29.4 bits (67), Expect = 1.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
GS++P TN HL + + A ++ V I +P KK L S + R E++R A +
Sbjct: 9 GSFDPITNGHLDIIKRASALFDEV--IVAVAI-NP-----SKKPLFSLEERVELIREATK 60
Query: 74 D 74
Sbjct: 61 H 61
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 140
Score = 27.8 bits (62), Expect = 4.4
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 159 INHIAGHHGIVVITRGDTNPAKFIYQHDILS--KHMNK----IIIVNEWIKNEISSTYLR 212
IA G + R N F Y+ + + K +N I+I+ ++ K E SST LR
Sbjct: 74 TAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLETILIIPDYDKIEYSSTLLR 133
>gnl|CDD|212595 cd11721, FANCD2, Fanconi anemia D2 protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCD2
is required for DNA damage-induced intra-S phase
checkpoint and for cellular resistance to DNA
crosslinking agents.
Length = 1161
Score = 28.8 bits (65), Expect = 4.8
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 22/80 (27%)
Query: 186 DILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHG-----LYS 240
D+ K + + + ++ EI + S+ +I D QH L
Sbjct: 103 DLTEKLLELLSVAPSELQKEIIT-----------SLPEIIGDS------QHEDVAEELCK 145
Query: 241 VVESPHLEVSPILDLLSNLN 260
+++ PILD LSNLN
Sbjct: 146 LLQENSELTVPILDALSNLN 165
>gnl|CDD|180781 PRK06973, PRK06973, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 243
Score = 28.6 bits (64), Expect = 4.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLA 71
G+++P + HL + D L L V + P + K D+ +++HR M R A
Sbjct: 29 GTFDPIHDGHLALARRFADVL-DLTELV----LIPAGQPWQKADVSAAEHRLAMTRAA 81
Score = 28.6 bits (64), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 205 EISSTYLRRALRRGDSIKYLINDK--------VEQYIYQHGLY 239
++S+T +R LR + + + D V YI QH LY
Sbjct: 199 DLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQHRLY 241
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 28.8 bits (64), Expect = 5.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 90 WTRTRVSLDHHEDELNQQLDAQCT--NKTDVKRARHDQHN 127
WTRT + H + L Q T N T V RH++H+
Sbjct: 2738 WTRTAAAQKRHGEILGQVSPPIVTLDNATPVNGIRHEKHS 2777
>gnl|CDD|224353 COG1436, NtpG, Archaeal/vacuolar-type H+-ATPase subunit F [Energy
production and conversion].
Length = 104
Score = 27.3 bits (61), Expect = 5.4
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 162 IAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGD 219
+AG + V + + + + II++ E + +I +RR +R
Sbjct: 19 LAGVRVVYVADDEEDELRAALR--VLAEDDVG-IILITEDLAEKIREE-IRRIIRSSV 72
>gnl|CDD|107279 cd06284, PBP1_LacI_like_6, Ligand-binding domain of an
uncharacterized transcription regulator from
Actinobacillus succinogenes and its close homologs from
other bacteria. This group includes the ligand-binding
domain of an uncharacterized transcription regulator
from Actinobacillus succinogenes and its close homologs
from other bacteria. This group belongs to the the
LacI-GalR family repressors and are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding.
Length = 267
Score = 28.3 bits (64), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 28 ELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALEDS 75
LA DHL LGH I P D ++ R E R AL ++
Sbjct: 104 RLAVDHLISLGHRRIALITGPR-------DNPLARDRLEGYRQALAEA 144
>gnl|CDD|197820 smart00651, Sm, snRNP Sm proteins. small nuclear ribonucleoprotein
particles (snRNPs) involved in pre-mRNA splicing.
Length = 67
Score = 26.3 bits (59), Expect = 5.6
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 190 KHMNKIII--VNEWIKNEISSTYLRRALRRGDSIKYLI 225
+ MN +++ V E +K+ L RG++I Y+I
Sbjct: 30 QFMN-LVLEDVEETVKDGEKKRKLGLVFIRGNNIVYII 66
>gnl|CDD|193608 cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
HD-like nuclease, specifically digesting double-stranded
oligonucleotides and preferably cleaving at G:C pairs;
signature gene for Type I.
Length = 200
Score = 28.0 bits (62), Expect = 5.8
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 162 IAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKII---IVNEWIKNEISSTYLRRALRRG 218
IAGHHG + D L + + ++ ++ E + E+ L L+
Sbjct: 108 IAGHHGGLP----DVLLLLDEDDESALKERLEELDEEKLLLELWEEELEE-LLDELLKEL 162
Query: 219 DSIKYLINDKVEQYIYQHGLYSVV 242
+ E Y+ L+S++
Sbjct: 163 LLLLLPELLSFELYLLLRLLFSLL 186
>gnl|CDD|216490 pfam01420, Methylase_S, Type I restriction modification DNA
specificity domain. This domain is also known as the
target recognition domain (TRD).
Restriction-modification (R-M) systems protect a
bacterial cell against invasion of foreign DNA by
endonucleolytic cleavage of DNA that lacks a site
specific modification. The host genome is protected from
cleavage by methylation of specific nucleotides in the
target sites. In type I systems, both restriction and
modification activities are present in one heteromeric
enzyme complex composed of one DNA specificity subunit
(this family), two modification (M) subunits and two
restriction (R) subunits.
Length = 167
Score = 27.7 bits (62), Expect = 7.2
Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRR------GDSI 221
I++ + G + + ++ + +I N + N+ +L+ L++ G
Sbjct: 61 ILISSNGSIGYVFYRDKPFFANQDVKVLIPKNNELLNKFLYLFLKTILKKLKKLKFGSGQ 120
Query: 222 KYLINDKVEQYI 233
L ++++
Sbjct: 121 PKLNKKRLKELK 132
>gnl|CDD|173914 cd02163, PPAT, Phosphopantetheine adenylyltransferase.
Phosphopantetheine adenylyltransferase (PPAT). PPAT is
an essential enzyme in bacteria, responsible for
catalyzing the rate-limiting step in coenzyme A (CoA)
biosynthesis. The dinucleotide-binding fold of PPAT is
homologous to class I aminoacyl-tRNA synthetases. CoA
has been shown to inhibit PPAT and competes with ATP,
PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Length = 153
Score = 27.0 bits (61), Expect = 9.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 14 GSYNPPTNMHLRMFELAR---DHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
GS++P TN HL + E A D + V V KK L S + R E++R
Sbjct: 6 GSFDPITNGHLDIIERASKLFDEVI-----VA------VAVNPSKKPLFSLEERVELIRE 54
Query: 71 ALED 74
A +
Sbjct: 55 ATKH 58
>gnl|CDD|132195 TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein]
reductase II. This oxidoreductase of the 2-nitropropane
dioxygenase family (pfam03060) is commonly found in
apparent operons with genes involved in fatty acid
biosynthesis. Furthermore, this genomic context
generally includes the fabG 3-oxoacyl-[ACP] reductase
and lacks the fabI enoyl-[ACP] reductase.
Length = 307
Score = 27.8 bits (62), Expect = 9.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 156 ADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIV 198
D++ + + V+T G NP K+I L ++ K+I V
Sbjct: 76 VDELVDLVIEEKVPVVTTGAGNPGKYI---PRLKENGVKVIPV 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.395
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,182,669
Number of extensions: 1618267
Number of successful extensions: 1319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 40
Length of query: 344
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 246
Effective length of database: 6,590,910
Effective search space: 1621363860
Effective search space used: 1621363860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)