RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9416
(344 letters)
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine
adenylyltransferase catalysis, transferase; HET: NMN;
1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A
1nus_A* 1nut_A* 1nuu_A*
Length = 252
Score = 246 bits (630), Expect = 3e-81
Identities = 103/235 (43%), Positives = 137/235 (58%), Gaps = 7/235 (2%)
Query: 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLG-HTVCGGIMSPVHDKYGKKDLVSSKHR 64
I VL CGS+NP TNMHLRMFE+ARDHL + G + V GI+SPV+D YGKKDL +S HR
Sbjct: 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHR 64
Query: 65 CEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHD 124
M RLAL+ S WI++ WE++Q++W T L HH +L +
Sbjct: 65 VAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKAL---- 120
Query: 125 QHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQ 184
+P ++ LCG DVL++ PNLW I I G+V + R +P +I +
Sbjct: 121 --FSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAE 178
Query: 185 HDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
IL H + I + E ++NEIS+TY+RRAL +G S+KYLI D V YI HGLY
Sbjct: 179 SPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLY 233
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase;
nucleotidyltransferase superfamily; HET: NAD; 2.20A
{Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A*
1kku_A 1gzu_A*
Length = 279
Score = 221 bits (565), Expect = 4e-71
Identities = 108/253 (42%), Positives = 154/253 (60%), Gaps = 14/253 (5%)
Query: 2 SSAAIKTVLFVCGSYNPPTNMHLRMFELARDHL-FKLGHTVCGGIMSPVHDKYGKKDLVS 60
+S + VL CGS+NP TNMHLR+FELA+D++ +TV GI+SPV D Y KK L+
Sbjct: 3 NSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIP 62
Query: 61 SKHRCEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKR 120
+ HR M LA ++S W+++ WE+ Q EW T L HH+++L N ++R
Sbjct: 63 AYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLER 122
Query: 121 -------------ARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHG 167
++ + +V LCG D+LES AVPNLW ++DI I ++G
Sbjct: 123 PGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYG 182
Query: 168 IVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLIND 227
++ +TR + KFIY+ D+L KH + I +VNEWI N+ISST +RRALRRG SI+YL+ D
Sbjct: 183 LICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPD 242
Query: 228 KVEQYIYQHGLYS 240
V++YI +H LYS
Sbjct: 243 LVQEYIEKHNLYS 255
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 89.3 bits (222), Expect = 6e-21
Identities = 51/248 (20%), Positives = 84/248 (33%), Gaps = 54/248 (21%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGH---TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
G+++P H+R + F L P H + VS+ R MV
Sbjct: 30 GTFDPVHIGHMRSAVEMAEQ-FALDELRLLPNA---RPPHRE---TPQVSAAQRLAMVER 82
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
A+ + + E Q+ + + T +L+ + +L A
Sbjct: 83 AVAGVERLTVDPRELQRDKPSYTIDTLES----VRAELAADD------------------ 120
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSK 190
Q+ L G D + W + H IVV+ R D + D+L+
Sbjct: 121 ----QLFMLIGWDAFCGL---PTW--HRWEALLDHCHIVVLQRPDADSEPPESLRDLLAA 171
Query: 191 HMNKIIIVNEWIKN----------EISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240
+ +S+T +R L G S+++L+ D V YI H LY
Sbjct: 172 RSVADPQALKGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLY- 230
Query: 241 VVESPHLE 248
+PHLE
Sbjct: 231 --RAPHLE 236
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Length = 213
Score = 86.9 bits (216), Expect = 2e-20
Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 53/241 (21%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGH---TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
G+++P HL+ E + L P H + + +S R M+ L
Sbjct: 10 GTFDPVHYGHLKPVETLANL-IGLTRVTIIPNN---VPPH-R--PQPEANSVQRKHMLEL 62
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
A+ D L E E +++ + T +L ++ +
Sbjct: 63 AIADKPLFTLDERELKRNAPSYTAQTLKE------------------WRQEQGPDV---- 100
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITR-GDTNPAKFIYQHDILS 189
+ F+ G D L + W + I + ++V R G L
Sbjct: 101 ----PLAFIIGQDSLLTF---PTWY--EYETILDNAHLIVCRRPGYPLEMAQPQYQQWLE 151
Query: 190 KHMNKIIIVNEWIKN-----------EISSTYLRRALRRGDSIKYLINDKVEQYIYQHGL 238
H+ IS+T +R L+ G+S + L+ + V YI Q GL
Sbjct: 152 DHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGL 211
Query: 239 Y 239
Y
Sbjct: 212 Y 212
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 85.7 bits (213), Expect = 4e-20
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 53/229 (23%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKD--LVSSKHRCEMVRLA 71
G +NP H+ + + P KK + +HR M+++
Sbjct: 9 GQFNPIHTAHMIVASEVFHE-LQPDE-F---YFLPSFMSPLKKHHDFIDVQHRLTMIQMI 63
Query: 72 LEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPR 131
+++ + + + E ++ + T ++ + +H
Sbjct: 64 IDELGFGDICDDEIKRGGQSYTYDTIKA--------F-----------KEQHKDS----- 99
Query: 132 RKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKH 191
++ F+ G D + W I ++ VV+ R +
Sbjct: 100 ---ELYFVIGTDQYNQL---EKW--YQIEYLKEMVTFVVVNRDKNSQ-----------NV 140
Query: 192 MNKIIIVN-EWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
N +I + + +ISST +R+ + G SI+ L+ VE YI GLY
Sbjct: 141 ENAMIAIQIPRV--DISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 84.9 bits (211), Expect = 8e-20
Identities = 49/242 (20%), Positives = 89/242 (36%), Gaps = 54/242 (22%)
Query: 1 MSSAAIKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGH---TVCGGIMSPVHDKYGKKD 57
M + K +F G+++PP N HL M L P H + +D
Sbjct: 2 MPGGSKKIGIF-GGTFDPPHNGHLLMANEVLYQ-AGLDEIWFMPNQ---IPPHKQ--NED 54
Query: 58 LVSSKHRCEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTD 117
S HR EM++LA++ + KL E ++ + T ++ L
Sbjct: 55 YTDSFHRVEMLKLAIQSNPSFKLELVEMEREGPSYTFDTVSL--------L--------- 97
Query: 118 VKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTN 177
+ R+ Q+ F+ G D++E + W ++ + + + R +
Sbjct: 98 --KQRYPND--------QLFFIIGADMIEYL---PKW--YKLDELLNLIQFIGVKRPGFH 142
Query: 178 PAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHG 237
+ + E+SST +R + YLI DKV++Y+ ++G
Sbjct: 143 ----------VETPYPLLFADVPEF--EVSSTMIRERFKSKKPTDYLIPDKVKKYVEENG 190
Query: 238 LY 239
LY
Sbjct: 191 LY 192
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 84.5 bits (210), Expect = 1e-19
Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 53/229 (23%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGH---TVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
G+++PP HL + L P H + +++ S + R +M+ L
Sbjct: 9 GTFDPPHYGHLLIANEVYHA-LNLEEVWFLPNQ---IPPHKQ--GRNITSVESRLQMLEL 62
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSP 130
A E + E + + T ++ L ++
Sbjct: 63 ATEAEEHFSICLEELSRKGPSYTYDTMLQ--------L-----------TKKYPDV---- 99
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSK 190
Q F+ G D++E + W +I + V + R L
Sbjct: 100 ----QFHFIIGGDMVEYL---PKW--YNIEALLDLVTFVGVARPGYK----------LRT 140
Query: 191 HMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
+ +SS+ LR + + KYL+ +KV+ YI ++GLY
Sbjct: 141 PYPITTVEIPEF--AVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLY 187
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 82.6 bits (205), Expect = 4e-19
Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 69/235 (29%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCE 66
K +F ++NPP+ H + E H + ++ P K+++ RC+
Sbjct: 3 KIAIF-GSAFNPPSLGHKSVIESLS-HFDLV-------LLEPSIAHAWGKNMLDYPIRCK 53
Query: 67 MVRLALEDSTW--IKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHD 124
+V ++D ++ S+ E + ++ + E A T
Sbjct: 54 LVDAFIKDMGLSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPTADIT----------- 102
Query: 125 QHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQ 184
F+ G D + I ++
Sbjct: 103 -------------FVIGPDNFFKF---AKF--YKAEEITERWTVMACPE----------- 133
Query: 185 HDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
K +I ST +R AL G I V + + GLY
Sbjct: 134 ------------------KVKIRSTDIRNALIEGKDISTYTTPTVSELLLNEGLY 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 68/452 (15%), Positives = 118/452 (26%), Gaps = 189/452 (41%)
Query: 7 KTVL--FVCGSYNPPTNMHLRMF----------ELARDHLFKLGHTVCG----------G 44
KT + VC SY M ++F E + L KL + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 45 IMSPVHD-KYGKKDLVSSKHRCEMVRLALED--STWIKLSEWEA---------------- 85
I +H + + L+ SK + L L + + W A
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKA----WNAFNLSCKILLTTRFKQV 277
Query: 86 --QQSEWTRTRVSLDHHEDELNQ----QLDAQCTNKTDVKRARHDQHNGSPR-------- 131
S T T +SLDHH L L + + + + +PR
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAES 336
Query: 132 -----------------RKIQVMFLCGVDVLE---------SMAV-PN-----------L 153
+ ++ ++VLE ++V P +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 154 WSA---DDINHIAGH-HGIVVITRGDTNPAKFIYQ-HDI---LSKHMNKIIIVNEWIKNE 205
W D+ + H ++ + P + I L + ++ I +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVD- 451
Query: 206 ISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVVESPHLE----------------- 248
+ + LI ++QY Y H + HL+
Sbjct: 452 ------HYNIPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPERMTLFRMVFLD 499
Query: 249 -----------------VSPILDLLSNLNN--------------------NFLPNGSPET 271
IL+ L L +FLP E
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK--IEE 557
Query: 272 HVNAPRDTC-AQPASMH--------AHSKQQR 294
++ + T + A M AH + QR
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 38.3 bits (88), Expect = 0.004
Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 98/278 (35%)
Query: 99 HHED-ELNQQLDAQCTNKTDVKRARHDQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSAD 157
HH D E + Q K D+ F C DV + ++ S +
Sbjct: 5 HHMDFETGEH---QYQYK-DIL-----SVF---EDAFVDNFDCK-DVQDMPK--SILSKE 49
Query: 158 DINHIAGHHGIVVITRGDTNPAKFI------YQHDILSKHMNKIIIVN-EWIKNEISSTY 210
+I+HI ++++ + + Q +++ K + +++ +N +++ + I +
Sbjct: 50 EIDHI-------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 211 LRRALRR-----------GDS---IKY--------------LINDKVEQYIYQHGL---- 238
+ ++ D+ KY L+ + + + G+
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 239 -----------YSVVESPHLEV---------SP--ILDLLSNLNNNFLPNGSPETHVNAP 276
Y V ++ SP +L++L L PN + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH--- 219
Query: 277 RDTCAQPASMHAHSKQQRALSRSNSSRGTLKSKSKVRA 314
+ + HS Q L R LKSK
Sbjct: 220 ----SSNIKLRIHSIQAE-LRR------LLKSKPYENC 246
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A*
1m8k_A*
Length = 181
Score = 35.4 bits (81), Expect = 0.013
Identities = 14/104 (13%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 135 QVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMN- 193
+ + + + E+ + + + I + V + T P +Y + L + +
Sbjct: 54 ERVMMLTKALSENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFS 113
Query: 194 ----KIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYI 233
++ + ++ S T +RR + + L+ + V + I
Sbjct: 114 EDGYEVTAPPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVI 157
Score = 32.3 bits (73), Expect = 0.15
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRC 65
L V G P HL++ + + + I S + +D ++ R
Sbjct: 3 TMRGLLV-GRMQPFHRGHLQVIKSI----LEEVDELIICIGSA-QLSHSIRDPFTAGERV 56
Query: 66 EMVRLALED 74
M+ AL +
Sbjct: 57 MMLTKALSE 65
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 34.4 bits (79), Expect = 0.021
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
G + P HL + + + + GI S + ++ ++ R M+ +L+
Sbjct: 7 GRFQPFHKGHLEVIKKIA----EEVDEIIIGIGSA-QKSHTLENPFTAGERILMITQSLK 61
Query: 74 D 74
D
Sbjct: 62 D 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.046
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 55 KKDLVSSKHRCEMVRLALEDSTWIKLSEWEAQQSE-WTRTRVSLDHHEDELNQQLDA 110
+ D S E A +D L EW +QSE + +++ + QQ DA
Sbjct: 100 ELDAASKVMEQEWREKAKKD-----LEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.17
Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 76/185 (41%)
Query: 131 RRKIQVMFLCGVDVLESMAVPNLWSA---DDINHIAGHHGIVVITRGDTNPAKFIYQHDI 187
R+ I V+F GV E+ +L + D + + + P+
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN------------NEGVPS-------- 336
Query: 188 LSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVVESPHL 247
M L SI L ++V+ Y+ + + + +
Sbjct: 337 ---PM------------------L--------SISNLTQEQVQDYVNKTNSH-LPAGKQV 366
Query: 248 EVSPILDLLSNLNNNFLPNGSPET---------HVNAPR--DTCAQPASMHAHSKQQRAL 296
E+S L N N + +G P++ AP D P S +R L
Sbjct: 367 EIS-----LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-------ERKL 414
Query: 297 SRSNS 301
SN
Sbjct: 415 KFSNR 419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 9/29 (31%)
Query: 247 LEVSPILDLLSNLNNNFLPNGSPETHVNA 275
L+ S L L + + +P + A
Sbjct: 25 LQAS--LKL-------YADDSAPALAIKA 44
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide KINA transferase; HET: NAD; 2.90A
{Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 29.5 bits (65), Expect = 1.7
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCG--GIMSPVHDKYGKKDLVSSKHR 64
K V + G + P H+ M A + +L VC + K + + + R
Sbjct: 2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDR 61
Query: 65 CEMVRLALEDSTWI 78
++ +
Sbjct: 62 LRWMQQIFKYQKNQ 75
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 206 ISSTYLRRALRRGD 219
ISST +R L GD
Sbjct: 162 ISSTTVREFLSEGD 175
>3eki_A High affinity transport system protein P37; TPP, cell membrane,
lipoprotein, membrane, transport protein, palmitate;
HET: TPP; 1.60A {Mycoplasma hyorhinis} PDB: 3e79_A*
3e78_A*
Length = 403
Score = 28.0 bits (61), Expect = 4.8
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 149 AVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKII 196
+ W+ D N GI+ D + +KF + IL H
Sbjct: 230 KIKKAWNDKDWNTFRNF-GILH--GKDNSSSKFKLEETILKNHFQNKF 274
>3myu_A High affinity transport system protein P37; Mg289, CYPL,
extracytoplasmic, thiamine binding protein, lipoprotein;
HET: VIB; 1.95A {Mycoplasma genitalium}
Length = 344
Score = 28.0 bits (61), Expect = 4.8
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 149 AVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIII-VNEWIKNEIS 207
A+ W+ + N GI + ++F + KH K + I ++
Sbjct: 167 AIKKAWNEKNWNQFMKF-GIGH--GQTNSASRFELPDLLFRKHFAKNYPGLQNAINSDPD 223
Query: 208 STYLRRALRRGDSIKYLI 225
+ R G + I
Sbjct: 224 KFAVVRGREIGINKNIKI 241
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 27.5 bits (62), Expect = 6.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 206 ISSTYLRRALRRGD 219
ISST +R+A+ G+
Sbjct: 165 ISSTRIRQAILDGN 178
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
binding domain, 6-stranded beta barrel nucleotide
binding domain; HET: CIT; 1.90A {Thermotoga maritima}
SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
1t6z_A* 2i1l_A
Length = 293
Score = 27.0 bits (61), Expect = 8.0
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 206 ISSTYLRRALRRGD 219
+SS+ +R ++ G
Sbjct: 135 VSSSLIRNLVQEGR 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.395
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,258,049
Number of extensions: 307383
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 34
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)