RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9416
(344 letters)
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 190 bits (483), Expect = 2e-59
Identities = 108/248 (43%), Positives = 151/248 (60%), Gaps = 14/248 (5%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLG-HTVCGGIMSPVHDKYGKKDLVSSKHRC 65
+ VL CGS+NP TNMHLR+FELA+D++ G +TV GI+SPV D Y KK L+ + HR
Sbjct: 4 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRV 63
Query: 66 EMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARH-- 123
M LA ++S W+++ WE+ Q EW T L HH+++L N ++R
Sbjct: 64 IMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKR 123
Query: 124 -----------DQHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVIT 172
+ +V LCG D+LES AVPNLW ++DI I ++G++ +T
Sbjct: 124 KWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVT 183
Query: 173 RGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQY 232
R + KFIY+ D+L KH + I +VNEWI N+ISST +RRALRRG SI+YL+ D V++Y
Sbjct: 184 RAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRRGQSIRYLVPDLVQEY 243
Query: 233 IYQHGLYS 240
I +H LYS
Sbjct: 244 IEKHNLYS 251
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human
(Homo sapiens), FKSG76 [TaxId: 9606]}
Length = 233
Score = 163 bits (413), Expect = 2e-49
Identities = 103/236 (43%), Positives = 138/236 (58%), Gaps = 7/236 (2%)
Query: 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLG-HTVCGGIMSPVHDKYGKKDLVSSKHR 64
I VL CGS+NP TNMHLRMFE+ARDHL + G + V GI+SPV+D YGKKDL +S HR
Sbjct: 3 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHR 62
Query: 65 CEMVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHD 124
M RLAL+ S WI++ WE++Q++W T L HH +L +
Sbjct: 63 VAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFS-- 120
Query: 125 QHNGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQ 184
+P ++ LCG DVL++ PNLW I I G+V + R +P +I +
Sbjct: 121 ----TPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAE 176
Query: 185 HDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYS 240
IL H + I + E ++NEIS+TY+RRAL +G S+KYLI D V YI HGLY+
Sbjct: 177 SPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYT 232
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Escherichia coli [TaxId: 562]}
Length = 213
Score = 79.0 bits (193), Expect = 6e-18
Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 24/233 (10%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCE 66
LF G+++P HL+ E + + T+ + P + R
Sbjct: 4 LQALF-GGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANS----VQRKH 58
Query: 67 MVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQH 126
M+ LA+ D L E E +++ + T +L + +
Sbjct: 59 MLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQ--------EQGPDVPLAFIIGQDS 110
Query: 127 NGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHD 186
+ + + L P + +
Sbjct: 111 LLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWL-----------EDHLTHNPE 159
Query: 187 ILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
L I + E IS+T +R L+ G+S + L+ + V YI Q GLY
Sbjct: 160 DLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLY 212
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 66.3 bits (160), Expect = 1e-13
Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 47/233 (20%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCE 66
K + G+++PP N HL M G + + + +D S HR E
Sbjct: 2 KKIGIFGGTFDPPHNGHLLMANEVLYQA---GLDEIWFMPNQIPPHKQNEDYTDSFHRVE 58
Query: 67 MVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQH 126
M++LA++ + KL E ++ + T ++ L + N D
Sbjct: 59 MLKLAIQSNPSFKLELVEMEREGPSYTFDTVSL--------LKQRYPNDQLFFIIGADMI 110
Query: 127 NGSPRRKIQVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHD 186
P+ L + +
Sbjct: 111 EYLPKWYKLDELLNLIQ------------------------------------FIGVKRP 134
Query: 187 ILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLY 239
++ + + E+SST +R + YLI DKV++Y+ ++GLY
Sbjct: 135 GFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVEENGLY 187
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 46.4 bits (109), Expect = 1e-06
Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 41/225 (18%)
Query: 17 NPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKD--LVSSKHRCEMVRLALED 74
NP H + +A + L G ++ + K K D +
Sbjct: 29 NPMHRAHEELCRMAMESLDADGV-----VVHMLLGKLKKGDIPAPVRDAAIRTMAEVYFP 83
Query: 75 STWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQHNGSPRRKI 134
+ ++ + R ++ H N
Sbjct: 84 PNTVMVTGYGFDMLYAG-PREAVLHAYFRQN---------------------------MG 115
Query: 135 QVMFLCGVDVLESMAVPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNK 194
F+ G D + + A D I + A L+K +
Sbjct: 116 ATHFIIGRDHAGVG---DYYGAFDAQTIFDDEVPEGAMEIEIFRADHTAYSKKLNKIVMM 172
Query: 195 IIIVNEWIKN--EISSTYLRRALRRGDSI-KYLINDKVEQYIYQH 236
+ + ++ +S T +R L +G + +V + + +
Sbjct: 173 RDVPDHTKEDFVLLSGTKVREMLGQGIAPPPEFSRPEVAKILMDY 217
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 42.6 bits (99), Expect = 2e-05
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 159 INHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNK-----IIIVNEWIKNEISSTYLRR 213
+ I + V + T P +Y + L + + + + ++ S T +RR
Sbjct: 75 VQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDGYEVTAPPLFYRDRYSGTEVRR 134
Query: 214 ALRRGDSIKYLINDKVEQYIYQ-HGLY 239
+ + L+ + V + I + +G+
Sbjct: 135 RMLDDGDWRSLLPESVVEVIDEINGVE 161
Score = 28.7 bits (63), Expect = 0.79
Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
+ G P HL++ + + + +L + G H
Sbjct: 4 LLVGRMQPFHRGHLQVIKSILEEVDELIICI--GSAQLSHSIRDPFTAGERVMMLTKALS 61
Query: 71 AL---EDSTWIKLSEWEAQQSEWTRTRVSLDHHED 102
+I + + W L D
Sbjct: 62 ENGIPASRYYIIPVQDIECNALWVGHIKMLTPPFD 96
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 41.4 bits (96), Expect = 3e-05
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 150 VPNLWSADDINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNK-----IIIVNEWIKN 204
+ I I + V T P +Y + L + + + + + +
Sbjct: 63 YDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPEMFNRK 122
Query: 205 EISSTYLRRALRRGDSIKYLINDKVEQYIYQ-HGLY 239
E S T +RR + G+ ++L+ V I + G+
Sbjct: 123 EYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEIKGVE 158
Score = 29.0 bits (64), Expect = 0.49
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 11 FVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRL 70
F+ G + P HL + + + + ++ + + ++ ++ R M+
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIII-----GIGSAQKSHTLENPFTAGERILMITQ 58
Query: 71 ALEDSTWIKLSEWEAQQSEWTRTRV 95
+L+D +
Sbjct: 59 SLKDYDLTYYPIPIKDIEFNSIWVS 83
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR,
NMN-adenylyltransferase domain {Haemophilus influenzae
[TaxId: 727]}
Length = 163
Score = 36.3 bits (83), Expect = 0.002
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGG--IMSPVHDKYGKKDLVSSKHR 64
K V + G + P H+ M A + +L VC + K + + + R
Sbjct: 2 KKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDR 61
Query: 65 CEMVRLALED 74
++ +
Sbjct: 62 LRWMQQIFKY 71
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 36.1 bits (82), Expect = 0.002
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 158 DINHIAGHHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNE---ISSTYLRRA 214
+ ++ R + + + M ++ V E ISS+ ++
Sbjct: 74 NFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEV 133
Query: 215 LRRGDSIKYLINDKVEQYIYQ 235
R + + + + V Q +
Sbjct: 134 ARHQGDVTHFLPENVHQALMA 154
Score = 34.2 bits (77), Expect = 0.009
Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 7 KTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCE 66
K ++ G+++P TN H+ + A + + KK + + + R
Sbjct: 1 KRAIYP-GTFDPITNGHIDIVTRATQMFDHVILAIA--------ASPSKKPMFTLEERVA 51
Query: 67 MVRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQH 126
+ + A +++ + + + R + + + R +
Sbjct: 52 LAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPEL 111
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 34.9 bits (79), Expect = 0.006
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 154 WSADDINHIAGHHGIVVITRGDTNPAKFIY--QHDILSKHMNKIIIVNEWIKNE---ISS 208
+ G+ I +G F Y Q ++KH+ + +SS
Sbjct: 68 VGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSS 127
Query: 209 TYLRRALRRGDSIKYLINDKVEQYIYQ 235
+ + G + L+ + V + +
Sbjct: 128 SLAKEVAMLGGDVSELLPEPVNRRLRD 154
Score = 27.2 bits (59), Expect = 1.9
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
GS++P T H+ +FE A ++ V + + + ++ L
Sbjct: 8 GSFDPVTLGHVDIFERAAAQFDEV--VVAILVNPAKTGMFDLDERIAMVKESTTHLPNLR 65
Query: 74 DSTWIKLSEWEAQQSEWTRTRVSLDH 99
L + T L
Sbjct: 66 VQVGHGLVVDFVRSCGMTAIVKGLRT 91
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 33.8 bits (76), Expect = 0.013
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 154 WSADDINHIAGHHGIVVITRGDTNPAKFIY--QHDILSKHMNKIIIVNEWIKNE----IS 207
+ HGI V+ RG + Y Q + +K + + I +E IS
Sbjct: 67 VHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFIS 126
Query: 208 STYLRRALRRGDSIKYLINDKVEQYIYQ 235
S+ ++ G + + +V + + +
Sbjct: 127 SSLVKEVALYGGDVTEWVPPEVARALNE 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
GS++P T H+ + + A + ++ V + KK + + + R +++ L
Sbjct: 7 GSFDPITLGHVDIIKRALSIFDE--------LVVLVTENPRKKCMFTLEERKKLIEEVLS 58
Query: 74 DSTWIKLSEWEAQQSEWTRTRVSLDHHEDELN 105
D +K+ ++ +
Sbjct: 59 DLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRA 90
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 163
Score = 32.7 bits (73), Expect = 0.029
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 165 HHGIVVITRGDTNPAKFIYQHDI------LSKHMNKIIIVNEWIKNEISSTYLRRALRRG 218
I RG + F Y+ L + + ++ + +SS+ ++ R
Sbjct: 79 RKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARYD 138
Query: 219 DSIKYLINDKVEQYIYQH 236
S+ + +VE + Q
Sbjct: 139 GSVSEFVPPEVELALQQK 156
Score = 31.1 bits (69), Expect = 0.10
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 8 TVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEM 67
++ GS++P T HL + + + + V + KK L S + RCE+
Sbjct: 2 SIAVCPGSFDPVTYGHLDIIKRGAHIFEQ--------VYVCVLNNSSKKPLFSVEERCEL 53
Query: 68 VRLALEDSTWIKLSEWEAQQSEWTRTRVSLDHHEDELNQQLDAQCTNKTDVKRARHDQH 126
+R +D I + + ++ R + + T V R +
Sbjct: 54 LREVTKDIPNITVETSQGLLIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESI 112
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 31.1 bits (69), Expect = 0.095
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 185 HDILSKHMNKIIIVNEWIKNEISSTYLRRALRRGDSIKYLINDKVEQYIYQ 235
+ L + + I+ + +SST ++ R G + L+ + +
Sbjct: 106 NRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKA 156
Score = 29.2 bits (64), Expect = 0.43
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 14 GSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRCEMVRLALE 73
GS++P TN HL + + A LF+ S S++ R ++R A
Sbjct: 7 GSFDPLTNGHLDVIQRAS-RLFEKVTVAVLENPSKRGQYL-----FSAEERLAIIREATA 60
Query: 74 DSTWIKLSEWEAQQSEWTRTRVSLDHHEDELN 105
++ + + ++ R + +
Sbjct: 61 HLANVEAATFSGLLVDFVRRVGAQAIVKGLRA 92
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of
bifunctional FAD synthetase {Thermotoga maritima [TaxId:
2336]}
Length = 157
Score = 28.0 bits (61), Expect = 1.0
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 165 HHGIVVITRGDTNPAKFIYQHDILSKHMNKIIIVNEWIKNE---ISSTYLRRALRRGD 219
V+ D K + + + E + + +SS+ +R ++ G
Sbjct: 90 SGVSAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEGR 147
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 250
Score = 27.8 bits (62), Expect = 1.6
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 205 EISSTYLRRALRRGDSIKYLINDKVEQYIYQHGLYSVVESPHLEVSPILDLLSNLNNNFL 264
S Y++ +Y++ + I+ Y E E L ++ LN++ L
Sbjct: 63 TQSGDYIKVTCVTDTLTQYMVVHNGDPIIHM-ATYITAEPSIGE----LRFIARLNSDLL 117
Query: 265 PNGSPETHVNAPRDTCA 281
PN P V+ D A
Sbjct: 118 PNEEPFGDVSTTADGTA 134
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate
cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 26.0 bits (56), Expect = 4.0
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 6 IKTVLFVCGSYNPPTNMHLRMFELARDHLFKLGHTVCGGIMSPVHDKYGKKDLVSSKHRC 65
+K V G+++ H+++ E A+ L V + + KK S +HR
Sbjct: 1 MKKV-ITYGTFDLLHWGHIKLLERAKQLGDYL---VVAISTDEFNLQKQKKAYHSYEHRK 56
Query: 66 EMVR 69
++
Sbjct: 57 LILE 60
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase
{Alfalfa (Medicago sativa) [TaxId: 3879]}
Length = 227
Score = 26.3 bits (57), Expect = 5.0
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 223 YLINDKVEQYIYQHGLYSVVESPHLE 248
L +D + QYI + ++ E ++
Sbjct: 3 LLQSDALYQYILETSVFP-REHEAMK 27
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 25.6 bits (55), Expect = 6.7
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
Query: 118 VKRARHDQHNGSPRRKIQVMFLCGVDVL----ESMAVPNLWSADDINHIAGHHGIVVITR 173
+ + R + M + D A D ++ + +
Sbjct: 52 IYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNA 111
Query: 174 GDTNPAKFIYQHDILSKHMNKIIIVNEWIKNEISSTYLRRALRRG 218
T ++ + + I+VN + + + + AL G
Sbjct: 112 PSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.395
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,268,698
Number of extensions: 57349
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 32
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)