BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9417
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UPN6|SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1
Length = 1271
Score = 133 bits (334), Expect = 5e-31, Method: Composition-based stats.
Identities = 61/106 (57%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGL
Sbjct: 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 64 YVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>sp|Q6DID3|SCAF8_MOUSE Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1
Length = 1268
Score = 132 bits (333), Expect = 7e-31, Method: Composition-based stats.
Identities = 61/106 (57%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGL
Sbjct: 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 64 YVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>sp|Q63623|SCAF8_RAT Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1
Length = 1268
Score = 128 bits (322), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGL
Sbjct: 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R Q + KDV APRF+ N+ TF +++CP +D+ K
Sbjct: 64 YVIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 86.3 bits (212), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>sp|O95104|SFR15_HUMAN Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4
PE=1 SV=3
Length = 1147
Score = 125 bits (315), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/106 (55%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 64 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 10 ELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVI 66
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11
PE=1 SV=3
Length = 1555
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 75 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKD 134
SK I + LA + + K +V +E K S KLP +Y++D+I+ +
Sbjct: 33 SKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGRE----- 87
Query: 135 VYAPRFARNLYRTFGYVFQCPDEDRKK 161
Y F +NL TF VF+ DE+ +K
Sbjct: 88 -YLTAFTKNLVATFICVFEKVDENTRK 113
>sp|Q10237|YD14_SCHPO Uncharacterized protein C4G9.04c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4G9.04c PE=4 SV=1
Length = 638
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 75 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKD 134
SK I + +A + Y +V ++EK I KC KLP LY++D+I + Y
Sbjct: 19 SKPIIHTLTYIAQENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSISKNLGAPYTY-- 76
Query: 135 VYAPRFARNLYRTF 148
F +L+ TF
Sbjct: 77 ----FFGLHLFSTF 86
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 13 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQEL 64
SK I + +A + Y +V ++EK I KC KLP LY++ ++ L
Sbjct: 19 SKPIIHTLTYIAQENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSISKNL 70
>sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=seb1 PE=1 SV=3
Length = 620
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
I E++ L S+ +K IS +KI + L+++ V SV K+ + +KL L
Sbjct: 4 IAEFDGILDSLEHSKTGISGSKILKLTNLSMENVSENAQFVASVYKYAKRAPVTHKLGAL 63
Query: 117 YVIDAII 123
Y++D+I+
Sbjct: 64 YILDSIV 70
>sp|P39081|PCF11_YEAST Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCF11 PE=1 SV=2
Length = 626
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 56 VIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPG 115
++ ++N L + PI IT + KLA + +Y V ++E I KC + KL
Sbjct: 8 IVKDFNSILEELTFNSRPI----ITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYA 63
Query: 116 LYVIDAIIHQARLQFKYKDVYAP---RFARNLYRTF 148
Y +D+I K+V +P F+RNL+ +
Sbjct: 64 FYALDSIC---------KNVGSPYTIYFSRNLFNLY 90
>sp|Q116D3|SYP_TRIEI Proline--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=proS PE=3 SV=1
Length = 601
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 84 KLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARN 143
+L L TH + V+ ++ K I +S +LP IH +LQ K++D PRF
Sbjct: 106 ELGLGPTH--EEVITTIAKDI--IRSYRQLP--------IHLYQLQTKFRDEIRPRFGLM 153
Query: 144 LYRTF----GYVFQCPDEDRKK 161
R F GY F +E KK
Sbjct: 154 RGREFIMKDGYSFHADEESLKK 175
>sp|Q09345|PCF11_CAEEL Polyadenylation and cleavage factor homolog 11 OS=Caenorhabditis
elegans GN=pcf-11 PE=2 SV=1
Length = 823
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 96 VVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFGYVFQCP 155
+V+ +E+ + C KL +YV D+I+ K + Y FAR + F + F+
Sbjct: 43 IVEVIERHLTTCSPSQKLLVMYVCDSILKNV----KKPNDYDALFARKIVSMFEHAFRQG 98
Query: 156 DE 157
DE
Sbjct: 99 DE 100
>sp|Q317R3|SYD_DESDG Aspartate--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
GN=aspS PE=3 SV=1
Length = 606
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVID 120
++ +L++ T P + G+V +K YV + WK + K P V D
Sbjct: 88 SEYVLAVRGTVRP----RPEGMVNPNMKTGEVEVYVSE------WKLLNTSKTPPFQVED 137
Query: 121 AI--IHQARLQFKYKDVYAPRFARNL 144
+ RL+++Y D+ PR ARN
Sbjct: 138 RVEASENLRLEYRYLDLRRPRLARNF 163
>sp|Q68W49|Y683_RICTY Uncharacterized protein RT0683 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0683 PE=3 SV=1
Length = 309
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 3 LSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQY--------KLPGL 54
L I+ TK +S I G++ + +Y Y++Q +++ +Q K L
Sbjct: 48 LGISDTKNLLSLQNIIGLILIIFAGVLFYAYILQHEWRYVTLSDAQVKRYRISEKKALSL 107
Query: 55 YVIGEWNQELLSINSTKPPISKAKITGIVK 84
Y + + ELL+ N+ K I + G V+
Sbjct: 108 YQLMKDTHELLTKNNIKYWIESGTLLGAVR 137
>sp|A7HME4|SYD_FERNB Aspartate--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=aspS PE=3 SV=1
Length = 576
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 106 KCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNL 144
K S+ +LP Y D + + RL+++Y D+ P+ NL
Sbjct: 99 KILSKSELPPFYPGDDVSEEMRLKYRYLDIRNPKMMNNL 137
>sp|Q9EP51|V1R50_MOUSE Vomeronasal type-1 receptor 50 OS=Mus musculus GN=Vmn1r50 PE=2 SV=1
Length = 310
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 116 LYVIDAIIHQARLQFKYKDVY--APRFARNLYRTFG-YVFQCPDE 157
LY++D +I QARL+FK + + Y TF +VF C D+
Sbjct: 250 LYILDTVIFQARLKFKDVSTFFCVKIIISHSYATFSPFVFICNDK 294
>sp|Q9URW9|YLX7_SCHPO Putative aldehyde dehydrogenase-like protein C922.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC922.07c PE=3 SV=1
Length = 496
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 53 GLYVIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSV-EKF-IWKCKSQ 110
GLY+ GEW++ + + P I + I K+ L Y V+S E F WK
Sbjct: 22 GLYINGEWHKSAETWETVDPSIEEV----IAKVYLAGEKEIDYAVKSAKEAFKTWK---- 73
Query: 111 YKLPGLYVIDAIIHQARLQFKYKDVYA 137
K+PG + ++ A L K+ D A
Sbjct: 74 -KVPGSEKGELLMKLAELTEKHADTLA 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,729,017
Number of Sequences: 539616
Number of extensions: 1920545
Number of successful extensions: 4046
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4024
Number of HSP's gapped (non-prelim): 24
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)