Query psy9417
Match_columns 161
No_of_seqs 126 out of 159
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9j_A RNA-binding protein 16; 100.0 1.1E-31 3.7E-36 208.0 11.0 105 56-160 3-108 (145)
2 3clj_A Protein NRD1; CTD-inter 100.0 2E-31 6.7E-36 211.6 9.5 104 57-160 3-118 (157)
3 1sz9_A PCF11 protein; RNA poly 99.9 2E-26 6.8E-31 178.7 6.3 97 53-159 5-102 (144)
4 3clj_A Protein NRD1; CTD-inter 99.8 1.1E-20 3.8E-25 149.9 1.4 68 1-68 9-76 (157)
5 4fu3_A Regulation of nuclear P 99.7 2E-17 6.9E-22 124.0 6.7 94 58-159 7-101 (135)
6 4flb_A Regulation of nuclear P 99.7 2.6E-17 8.7E-22 123.4 6.6 93 58-159 8-100 (132)
7 3d9j_A RNA-binding protein 16; 99.7 1.4E-16 4.9E-21 123.1 9.1 104 2-105 11-136 (145)
8 1sz9_A PCF11 protein; RNA poly 99.4 5.9E-13 2E-17 102.9 6.0 99 11-109 21-140 (144)
9 2km4_A Regulator of TY1 transp 99.2 9.7E-12 3.3E-16 95.2 5.5 95 58-159 6-103 (142)
10 4fu3_A Regulation of nuclear P 98.7 3.3E-08 1.1E-12 73.6 5.9 53 11-63 17-69 (135)
11 4flb_A Regulation of nuclear P 98.6 8.8E-08 3E-12 71.3 7.3 53 11-63 18-70 (132)
12 2km4_A Regulator of TY1 transp 96.9 0.001 3.5E-08 50.5 4.7 54 11-64 16-71 (142)
13 1vdy_A Hypothetical protein (R 90.2 0.59 2E-05 35.9 5.8 73 56-128 6-82 (140)
14 1x5b_A Signal transducing adap 86.0 1.4 4.6E-05 34.0 5.5 72 76-149 33-105 (163)
15 1mhq_A ADP-ribosylation factor 81.5 2.4 8.3E-05 32.1 5.2 72 77-149 20-91 (148)
16 3ldz_A STAM-1, signal transduc 80.9 2.1 7.2E-05 32.0 4.6 73 75-148 22-94 (140)
17 1juq_A ADP-ribosylation factor 78.2 3 0.0001 32.3 4.8 72 77-149 32-103 (171)
18 3g2s_A C-terminal fragment of 72.5 2.5 8.4E-05 32.3 2.9 71 78-149 31-101 (149)
19 1elk_A Target of MYB1; superhe 69.8 4.3 0.00015 30.9 3.7 56 76-131 34-90 (157)
20 1dvp_A HRS, hepatocyte growth 69.1 4.4 0.00015 32.0 3.8 54 78-131 25-78 (220)
21 3zyq_A Hepatocyte growth facto 68.6 9 0.00031 30.6 5.6 57 75-131 25-81 (226)
22 3rru_A TOM1L1 protein; structu 56.8 12 0.00042 28.5 4.1 54 78-131 36-90 (152)
23 2bpt_A Importin beta-1 subunit 47.7 80 0.0027 27.7 8.4 39 91-129 635-673 (861)
24 2rpa_A Katanin P60 ATPase-cont 41.9 15 0.0005 25.5 2.2 42 26-67 30-72 (78)
25 4fdd_A Transportin-1; heat rep 40.1 2.1E+02 0.007 25.7 12.2 37 111-153 602-639 (852)
26 4ffb_C Protein STU2; tubulin f 37.1 42 0.0014 26.1 4.5 36 93-128 137-172 (278)
27 2qk1_A Protein STU2; STU2P, XM 35.3 31 0.0011 27.1 3.5 36 93-128 144-179 (249)
28 2a26_A Calcyclin-binding prote 26.9 15 0.00051 23.6 0.2 39 53-91 2-40 (50)
29 1k19_A Chemosensory protein CS 26.5 29 0.001 25.6 1.8 55 92-146 43-104 (112)
30 4fdd_A Transportin-1; heat rep 24.6 1.6E+02 0.0054 26.4 6.6 54 92-148 439-492 (852)
31 2db0_A 253AA long hypothetical 23.2 2.1E+02 0.0072 23.8 6.5 72 73-155 85-156 (253)
32 3onk_A Epsin-3, ENT3; helix, p 21.0 2.5E+02 0.0087 21.2 6.2 67 73-146 26-95 (150)
33 3e6s_A Ferritin; iron storage, 20.7 2.7E+02 0.0091 20.7 7.5 35 13-47 77-111 (168)
No 1
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.97 E-value=1.1e-31 Score=208.00 Aligned_cols=105 Identities=57% Similarity=0.968 Sum_probs=100.9
Q ss_pred HHHhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhc-ccC
Q psy9417 56 VIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFK-YKD 134 (161)
Q Consensus 56 vIDef~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~-~kd 134 (161)
++++|++.|++|.+++|+|||++|++||.+|++|+++|++||+.++++|++|+|++|||+|||+||||||++++.+ ++|
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~ 82 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKD 82 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999987 578
Q ss_pred ccHHhhHHHHHHHHhhhhcCCCcccC
Q psy9417 135 VYAPRFARNLYRTFGYVFQCPDEDRK 160 (161)
Q Consensus 135 ~Y~~rF~~nl~~tf~~~~~c~~~dk~ 160 (161)
.|+++|+++|.++|.++|+|++++|.
T Consensus 83 ~f~~~F~~~L~~~f~~~~~~~~~~r~ 108 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQNLYRCPGDDKS 108 (145)
T ss_dssp SHHHHHHHHHHHHHHHHTSSCGGGHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999987764
No 2
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-31 Score=211.60 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=95.0
Q ss_pred HHhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcc----
Q psy9417 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKY---- 132 (161)
Q Consensus 57 IDef~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~---- 132 (161)
+++|+++|++|.+++|||||++|++||++|++|+++|++||+.||+||++|||+||||+|||||||+||++++++.
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred ----cCccH---HhhHHHHHHHHhhhhc-CCCcccC
Q psy9417 133 ----KDVYA---PRFARNLYRTFGYVFQ-CPDEDRK 160 (161)
Q Consensus 133 ----kd~Y~---~rF~~nl~~tf~~~~~-c~~~dk~ 160 (161)
++.|+ .||+.++..+|.++++ ||+++|.
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~ 118 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKE 118 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 25685 6889999999999996 5666664
No 3
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.93 E-value=2e-26 Score=178.68 Aligned_cols=97 Identities=26% Similarity=0.400 Sum_probs=88.4
Q ss_pred hHHHHHhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcc
Q psy9417 53 GLYVIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKY 132 (161)
Q Consensus 53 ~lyvIDef~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~ 132 (161)
+--++++|...|++|. .+||++|++||.+|++|++++++||+.|+++|++|+|+||||+|||+||||||+|++
T Consensus 5 ~~~~~~~f~~~L~~L~----~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~--- 77 (144)
T 1sz9_A 5 TEVIVKDFNSILEELT----FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSP--- 77 (144)
T ss_dssp HHHHHHHHHHHHTTCS----SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTT---
T ss_pred HHHHHHHHHHHHHHhc----cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccch---
Confidence 3457899999999885 489999999999999999999999999999999999999999999999999999876
Q ss_pred cCccHHhhHHHHHHHHhhhhcC-CCccc
Q psy9417 133 KDVYAPRFARNLYRTFGYVFQC-PDEDR 159 (161)
Q Consensus 133 kd~Y~~rF~~nl~~tf~~~~~c-~~~dk 159 (161)
|...|+++|.++|+++|.+ +++.|
T Consensus 78 ---y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 78 ---YTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp ---HHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7799999999999999964 55554
No 4
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-20 Score=149.87 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=64.6
Q ss_pred CcccccCCCCCchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCchHHHHHhhHHHhhhhh
Q psy9417 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQELLSIN 68 (161)
Q Consensus 1 ~l~~~~~~~~~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~~~~~~~lyvIDef~~eL~sL~ 68 (161)
+|++|.+++|++|+.||..||+.|++++++|+||||.||+||++|.|++|||||||||+..+.+.+-.
T Consensus 9 ~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~ 76 (157)
T 3clj_A 9 TLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDET 76 (157)
T ss_dssp HHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999986544
No 5
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.70 E-value=2e-17 Score=123.97 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=83.9
Q ss_pred HhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccH
Q psy9417 58 GEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYA 137 (161)
Q Consensus 58 Def~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~ 137 (161)
|.|.+.|++|. .|+..|++++..|++|.++++.||+++++++++++|++||+.|||+|+|++|++.+ .+.|+
T Consensus 7 ~~l~~~L~~L~-----~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~---~~~y~ 78 (135)
T 4fu3_A 7 SALEKKLSELS-----NSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRK---GPEFT 78 (135)
T ss_dssp HHHHHHHHHCC-----SSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTT---CSHHH
T ss_pred HHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhc---CHHHH
Confidence 67888888885 58899999999999999999999999999999999999999999999999999754 36799
Q ss_pred HhhHHHHHHHHhhhhc-CCCccc
Q psy9417 138 PRFARNLYRTFGYVFQ-CPDEDR 159 (161)
Q Consensus 138 ~rF~~nl~~tf~~~~~-c~~~dk 159 (161)
..|++.|..+|.+++. ++++.|
T Consensus 79 ~~f~~~l~~~~~~~~~~~~~~~k 101 (135)
T 4fu3_A 79 REFESVLVDAFSHVAREADEGCK 101 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984 555444
No 6
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=123.43 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=81.6
Q ss_pred HhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccH
Q psy9417 58 GEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYA 137 (161)
Q Consensus 58 Def~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~ 137 (161)
++|.+.|++|. .|+..|++++..|++|.++++.||+++++++++++|++||+.|||+|+|++|++.+++ +.|.
T Consensus 8 ~~l~~~L~~L~-----~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~--~~f~ 80 (132)
T 4flb_A 8 SSLDRKFQSVT-----NTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNA--IIFR 80 (132)
T ss_dssp HHHHHHHHHCC-----SSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTC--THHH
T ss_pred HHHHHHHHHCc-----ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccCh--HHHH
Confidence 56777777774 6999999999999999999999999999999999999999999999999999988754 6788
Q ss_pred HhhHHHHHHHHhhhhcCCCccc
Q psy9417 138 PRFARNLYRTFGYVFQCPDEDR 159 (161)
Q Consensus 138 ~rF~~nl~~tf~~~~~c~~~dk 159 (161)
+.|.+.|..+|.++ |+++.|
T Consensus 81 ~~f~~~l~~~~~~~--~~~~~~ 100 (132)
T 4flb_A 81 ESFADVLPEAAALV--KDPSVS 100 (132)
T ss_dssp HHHHTTHHHHHHTT--CSTTTH
T ss_pred HHHHHHHHHHHHHh--CCHHHH
Confidence 88999998888876 455544
No 7
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.67 E-value=1.4e-16 Score=123.08 Aligned_cols=104 Identities=45% Similarity=0.611 Sum_probs=84.1
Q ss_pred cccccCCCCCchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCchHHHHHhhHHHhhhhh-------------
Q psy9417 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQELLSIN------------- 68 (161)
Q Consensus 2 l~~~~~~~~~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~~~~~~~lyvIDef~~eL~sL~------------- 68 (161)
|++|.+++||+|+.+|+.+|..|+.++++++|||+.+|++|.||.|++|||+|||+|+..+...+-.
T Consensus 11 L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~ 90 (145)
T 3d9j_A 11 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSN 90 (145)
T ss_dssp HHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999998776554311
Q ss_pred ---c------CCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9417 69 ---S------TKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIW 105 (161)
Q Consensus 69 ---~------~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~ 105 (161)
. ..++-.|.+|..|..++.++-=+-..+++.|+..+.
T Consensus 91 ~L~~~f~~~~~~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 91 NIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp HHHHHHHHHTSSCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 0 234566777777777777666565666666666654
No 8
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.37 E-value=5.9e-13 Score=102.92 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=81.0
Q ss_pred CchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCchHHHHHhhHHHh----------------hhhhcCCCCC
Q psy9417 11 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQEL----------------LSINSTKPPI 74 (161)
Q Consensus 11 ~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~~~~~~~lyvIDef~~eL----------------~sL~~~k~~i 74 (161)
+.||..|+++|..|+.++++++|||+.+|++|.+|.|++|+|+|||+|++++-. .+.....+..
T Consensus 21 ~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~ 100 (144)
T 1sz9_A 21 FNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNT 100 (144)
T ss_dssp SCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHH
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 479999999999999999999999999999999999999999999999976632 1222223456
Q ss_pred cHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHhhcCC
Q psy9417 75 SKAKITGIVKLALKA-----THYYKYVVQSVEKFIWKCKS 109 (161)
Q Consensus 75 SrskI~~LT~lA~en-----ik~~k~IV~~Ie~~I~k~~p 109 (161)
.|.+|..|..++.++ -=+-+.+++.|+.++.+.++
T Consensus 101 ~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~~ 140 (144)
T 1sz9_A 101 TRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKASA 140 (144)
T ss_dssp HHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhhh
Confidence 788888888888877 55667777888888877665
No 9
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.22 E-value=9.7e-12 Score=95.23 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=84.1
Q ss_pred HhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCCCcchhHHHHHHHHHHHhhhhcccCc
Q psy9417 58 GEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKC--KSQYKLPGLYVIDAIIHQARLQFKYKDV 135 (161)
Q Consensus 58 Def~~eL~sL~~~k~~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~--~p~~KL~~LYVIDSIvRn~~~~~~~kd~ 135 (161)
|.|.+.|++|. .|+..|++++.-++.|.++++.||+++.+++.+. +|++||+.||+++.|+.|+..+.+ +.
T Consensus 6 ~~l~~kL~~L~-----~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~--~~ 78 (142)
T 2km4_A 6 EQFTTKLNTLE-----DSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKI--IQ 78 (142)
T ss_dssp HHHHHHHHTCC-----SCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTC--CH
T ss_pred HHHHHHHHhcc-----ccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCc--hH
Confidence 66777888875 4899999999999999999999999999999997 889999999999999999986543 67
Q ss_pred cHHhhHHHHHHHHhhhhc-CCCccc
Q psy9417 136 YAPRFARNLYRTFGYVFQ-CPDEDR 159 (161)
Q Consensus 136 Y~~rF~~nl~~tf~~~~~-c~~~dk 159 (161)
|...|++.|.+.|.+++. ++++.+
T Consensus 79 f~~~F~~~L~~~~~~~~~~~~~~~~ 103 (142)
T 2km4_A 79 FQDSFGKVAAEVLGRINQEFPRDLK 103 (142)
T ss_dssp HHHHHHHTHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999996 555544
No 10
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=98.66 E-value=3.3e-08 Score=73.60 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=49.4
Q ss_pred CchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCchHHHHHhhHHH
Q psy9417 11 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQE 63 (161)
Q Consensus 11 ~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~~~~~~~lyvIDef~~e 63 (161)
+-|+..|+..|.-++.+.+++++||+.+++.+.+|.|+.|++.||++|++...
T Consensus 17 ~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~n 69 (135)
T 4fu3_A 17 SNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQN 69 (135)
T ss_dssp CSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999998653
No 11
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=98.62 E-value=8.8e-08 Score=71.34 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=49.7
Q ss_pred CchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCchHHHHHhhHHH
Q psy9417 11 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWNQE 63 (161)
Q Consensus 11 ~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~~~~~~~lyvIDef~~e 63 (161)
+-|+..|+.+|.-+|.+.+++++||+.+++.|.+|.|+.|++.||++|++...
T Consensus 18 ~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 18 TNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp CSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999997653
No 12
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=96.90 E-value=0.001 Score=50.46 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=48.7
Q ss_pred CchHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhc--cCCCCCchHHHHHhhHHHh
Q psy9417 11 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKC--KSQYKLPGLYVIGEWNQEL 64 (161)
Q Consensus 11 ~~s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~--~~~~~~~~lyvIDef~~eL 64 (161)
+-|+.-|+..+.-.|.+.++++.+|+..++.+.+. .|+.|++.||++++...-.
T Consensus 16 ~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqns 71 (142)
T 2km4_A 16 EDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQA 71 (142)
T ss_dssp CSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHH
Confidence 34888899999999999999999999999999997 7899999999999977644
No 13
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=90.16 E-value=0.59 Score=35.88 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=58.7
Q ss_pred HHHhhHHHh--hhhhcCCC-CCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhh
Q psy9417 56 VIGEWNQEL--LSINSTKP-PISKAKITGIVKLALKA-THYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARL 128 (161)
Q Consensus 56 vIDef~~eL--~sL~~~k~-~iSrskI~~LT~lA~en-ik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~ 128 (161)
.|++|.... ..=+...+ |-++..+.+|+.+...+ .+.+..|+..|.+.+.+..|.+|+-+|=+||-+|++...
T Consensus 6 ~~~~~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 6 SGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp SCTHHHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 355666544 33333444 89999999999999886 466799999999999999999999999999999987753
No 14
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.02 E-value=1.4 Score=34.00 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccH-HhhHHHHHHHHh
Q psy9417 76 KAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYA-PRFARNLYRTFG 149 (161)
Q Consensus 76 rskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~-~rF~~nl~~tf~ 149 (161)
=+.|-.|.++.-..-...+..+..|.++|+...|.--+-+|-++|+.++|.|.++. ...+ .+|...|..++.
T Consensus 33 w~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh--~evas~~Fl~el~~l~~ 105 (163)
T 1x5b_A 33 WSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFH--LEVCSRDFATEVRAVIK 105 (163)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHH--HHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH--HHHhhHHHHHHHHHHHc
Confidence 34455566555555567888899999999988888889999999999999987744 1111 456666655553
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=81.51 E-value=2.4 Score=32.11 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHHh
Q psy9417 77 AKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFG 149 (161)
Q Consensus 77 skI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf~ 149 (161)
+.|-.|..+--......+..+..|-+.|+...|.-=+-+|-++|+.++|.|.+|. .-+=..+|...|..++.
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh-~evas~~Fl~eL~kl~~ 91 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFH-SEVAKFRFLNELIKVLS 91 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHTSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHhhHHHHHHHHHHHc
Confidence 3455555555555566888899999999988899999999999999999998753 00111455555555443
No 16
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.92 E-value=2.1 Score=31.98 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHH
Q psy9417 75 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTF 148 (161)
Q Consensus 75 SrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf 148 (161)
.=+.|-.+.++.-......+..+.+|.+++....|.--+-+|-++|+.++|.|.++. .-+=..+|...|..++
T Consensus 22 dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~-~evas~~Fl~el~~l~ 94 (140)
T 3ldz_A 22 DWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH-LEVCSRDFASEVSNVL 94 (140)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-HHHSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH-HHHhhHHHHHHHHHHh
Confidence 334566666665555566888899999999888888889999999999999998754 0011145666555554
No 17
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=78.21 E-value=3 Score=32.35 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHHh
Q psy9417 77 AKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFG 149 (161)
Q Consensus 77 skI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf~ 149 (161)
+.|-.|.++--..-.-.+..+..|-+.|+...|.--|-+|-|+|+.++|.|.++. .-+=..+|...|..++.
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh-~evas~~Fl~eL~kl~~ 103 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH-NEVGKFRFLNELIKVVS 103 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH-HHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH-HHHhhHHHHHHHHHHhc
Confidence 3345555555555556778889999999888888889999999999999998765 01112456666666654
No 18
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.53 E-value=2.5 Score=32.28 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHHh
Q psy9417 78 KITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFG 149 (161)
Q Consensus 78 kI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf~ 149 (161)
-|-.|.++--..-...+..+..|.+.|+...|.-=|-+|-++|+.++|.|.+|. .-+=..+|...|.+++.
T Consensus 31 ~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh-~eias~~Fl~eL~kl~~ 101 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFH-DEVGKFRFLNELIKVVS 101 (149)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHH-HHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHH-HHHhhHHHHHHHHHHHc
Confidence 344444443333345778888999999988888889999999999999998864 11123556666666664
No 19
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.82 E-value=4.3 Score=30.85 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-cCCCCcchhHHHHHHHHHHHhhhhc
Q psy9417 76 KAKITGIVKLALKATHYYKYVVQSVEKFIWK-CKSQYKLPGLYVIDAIIHQARLQFK 131 (161)
Q Consensus 76 rskI~~LT~lA~enik~~k~IV~~Ie~~I~k-~~p~~KL~~LYVIDSIvRn~~~~~~ 131 (161)
=+.|-.|.++--..-...+..+.+|-+.|+. ..|.--+-+|-++|+.++|.|.++.
T Consensus 34 w~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh 90 (157)
T 1elk_A 34 WALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFH 90 (157)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3445555555544455688889999999984 5566669999999999999987754
No 20
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.06 E-value=4.4 Score=31.98 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhc
Q psy9417 78 KITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFK 131 (161)
Q Consensus 78 kI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~ 131 (161)
.|-.|.++--..-...+..+..|-+.|+.-.|.-=+-+|-|+|+.++|-|.++.
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~ 78 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH 78 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHH
Confidence 355555555444456788888999999888888889999999999999998764
No 21
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.60 E-value=9 Score=30.60 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhc
Q psy9417 75 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFK 131 (161)
Q Consensus 75 SrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~ 131 (161)
.=+.|-.|.++.-..-...+..+.+|.+.|+.-.|.-=|-+|-++|+.++|.|.++.
T Consensus 25 dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~ 81 (226)
T 3zyq_A 25 DWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVH 81 (226)
T ss_dssp CHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHH
Confidence 345566666666555556888999999999988888889999999999999998754
No 22
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=56.79 E-value=12 Score=28.47 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCCcchhHHHHHHHHHHHhhhhc
Q psy9417 78 KITGIVKLALKATHYYKYVVQSVEKFIWKC-KSQYKLPGLYVIDAIIHQARLQFK 131 (161)
Q Consensus 78 kI~~LT~lA~enik~~k~IV~~Ie~~I~k~-~p~~KL~~LYVIDSIvRn~~~~~~ 131 (161)
.|-.|.++--..-...+..+.+|.+.|+.. .|.-=+-+|-++|+.++|.|.+|.
T Consensus 36 ~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh 90 (152)
T 3rru_A 36 QFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQ 90 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 455555555555566888899999999842 333336699999999999997744
No 23
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=47.68 E-value=80 Score=27.66 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhh
Q psy9417 91 HYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQ 129 (161)
Q Consensus 91 k~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~ 129 (161)
.+...++..+...+....++-+..++-++..|++..+..
T Consensus 635 ~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh
Confidence 356778888888886566677888999999999988754
No 24
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.89 E-value=15 Score=25.54 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=28.4
Q ss_pred HHhhhhHHHHHHHHHHHHhccC-CCCCchHHHHHhhHHHhhhh
Q psy9417 26 KATHYYKYVVQSVEKFIWKCKS-QYKLPGLYVIGEWNQELLSI 67 (161)
Q Consensus 26 ~~~~~~k~vv~~vek~i~k~~~-~~~~~~lyvIDef~~eL~sL 67 (161)
.|+-+|.-+.+.+++||.-|.+ .-|-.=.-+-.++.+|++..
T Consensus 30 ta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~V 72 (78)
T 2rpa_A 30 SAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHH
Confidence 5899999999999999999953 33333333444455544443
No 25
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=40.07 E-value=2.1e+02 Score=25.68 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=22.5
Q ss_pred CcchhHHHHHHHHHHHhhhhcccCccHHhh-HHHHHHHHhhhhc
Q psy9417 111 YKLPGLYVIDAIIHQARLQFKYKDVYAPRF-ARNLYRTFGYVFQ 153 (161)
Q Consensus 111 ~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF-~~nl~~tf~~~~~ 153 (161)
.+..++-++.+|++..+..+ .+.+ ..++..++..+++
T Consensus 602 ~~~~~l~~l~~l~~~l~~~~------~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 602 FMIVALDLLSGLAEGLGGNI------EQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGG------HHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHhH------HHHhcCCcHHHHHHHHhC
Confidence 45667788999999998653 3444 2344444444443
No 26
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=37.14 E-value=42 Score=26.15 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhh
Q psy9417 93 YKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARL 128 (161)
Q Consensus 93 ~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~ 128 (161)
...+++.|...+....|..+...+-.|-.+++++|.
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 345666666777777777777888888777777654
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=35.29 E-value=31 Score=27.09 Aligned_cols=36 Identities=6% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhh
Q psy9417 93 YKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARL 128 (161)
Q Consensus 93 ~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~ 128 (161)
-..++..|...++...|.-|..+|-.|.+++.+++.
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 346777777777777888999999999999998863
No 28
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=26.91 E-value=15 Score=23.55 Aligned_cols=39 Identities=5% Similarity=0.083 Sum_probs=27.7
Q ss_pred hHHHHHhhHHHhhhhhcCCCCCcHHHHHHHHHHHHHhhH
Q psy9417 53 GLYVIGEWNQELLSINSTKPPISKAKITGIVKLALKATH 91 (161)
Q Consensus 53 ~lyvIDef~~eL~sL~~~k~~iSrskI~~LT~lA~enik 91 (161)
|+..++++...|+.|..+..-.+|+++..+-+..+.++.
T Consensus 2 ~~m~~eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE 40 (50)
T 2a26_A 2 SHMASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIE 40 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 445567777766666555445789999999988888775
No 29
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=26.48 E-value=29 Score=25.56 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhc-------ccCccHHhhHHHHHH
Q psy9417 92 YYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFK-------YKDVYAPRFARNLYR 146 (161)
Q Consensus 92 ~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~-------~kd~Y~~rF~~nl~~ 146 (161)
.-+++-.+|++-+.+|.|.||-++--||+-+.+|.-+.|. ....|..+|...+.+
T Consensus 43 lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~W~~L~~KyDP~g~y~~~y~~~~~~ 104 (112)
T 1k19_A 43 LKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRAKA 104 (112)
T ss_dssp HHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHHHSCHHHHHHHSSTTTCSSHHHHHHHHHH
T ss_pred HHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 3457778889999999999999999999999999877655 556888888877654
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=24.56 E-value=1.6e+02 Score=26.42 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHH
Q psy9417 92 YYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTF 148 (161)
Q Consensus 92 ~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf 148 (161)
+...++..+.+.+....|.-+-.++..+..++++.+... ..|.+-....|..++
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l---~~~l~~ll~~L~~~l 492 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL---VPYLAYILDTLVFAF 492 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh---HhHHHHHHHHHHHHH
Confidence 456777777777777778889999999999999887543 234444444444444
No 31
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=23.23 E-value=2.1e+02 Score=23.81 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=60.0
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHHHHhhhh
Q psy9417 73 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFGYVF 152 (161)
Q Consensus 73 ~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~tf~~~~ 152 (161)
|.+...=..+-.+|..+.+.-..+|..|....+-..|.-|.+.=|++--|.|+. |....++..-+..++
T Consensus 85 pltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran-----------P~l~~~v~rdi~sml 153 (253)
T 2db0_A 85 PLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN-----------PMLMASIVRDFMSML 153 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC-----------hHHHHHHHHHHHHHh
Confidence 334444556677899999999999999999998889999999999999999997 778888888888877
Q ss_pred cCC
Q psy9417 153 QCP 155 (161)
Q Consensus 153 ~c~ 155 (161)
.-|
T Consensus 154 tsk 156 (253)
T 2db0_A 154 SSK 156 (253)
T ss_dssp SCS
T ss_pred cCC
Confidence 633
No 32
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=20.99 E-value=2.5e+02 Score=21.17 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC---CCCcchhHHHHHHHHHHHhhhhcccCccHHhhHHHHHH
Q psy9417 73 PISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCK---SQYKLPGLYVIDAIIHQARLQFKYKDVYAPRFARNLYR 146 (161)
Q Consensus 73 ~iSrskI~~LT~lA~enik~~k~IV~~Ie~~I~k~~---p~~KL~~LYVIDSIvRn~~~~~~~kd~Y~~rF~~nl~~ 146 (161)
|-|.+-+..|+...- |...+..|++.|-+++.... -.|=+-+|-|||=+++|.-.. ++.-|..++..
T Consensus 26 Gp~~~~m~eIa~~T~-~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~------vv~~~r~~~~~ 95 (150)
T 3onk_A 26 GASSTLMDQISQGTY-NFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSER------FIDDTRNSINL 95 (150)
T ss_dssp CCCHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHH------HHHHHHTTHHH
T ss_pred CcCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHH
Confidence 667777776655443 67889999999999987542 445578999999999996443 33445555443
No 33
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=20.71 E-value=2.7e+02 Score=20.75 Aligned_cols=35 Identities=9% Similarity=-0.087 Sum_probs=23.6
Q ss_pred hHHHHhhHHHHHHHHhhhhHHHHHHHHHHHHhccC
Q psy9417 13 SKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKS 47 (161)
Q Consensus 13 s~~~~~~it~~a~~~~~~~k~vv~~vek~i~k~~~ 47 (161)
++..-.+...+-..|..+-+.|.+++-..+.-|..
T Consensus 77 ~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~ 111 (168)
T 3e6s_A 77 SCAEWSSPEDVWQSILELEQANTRSLLNLAEAAST 111 (168)
T ss_dssp GGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666777778888888887777764
Done!