Your job contains 1 sequence.
>psy9417
ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW
NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVID
AIIHQARLQFKYKDVYAPRFARNLYRTFGYVFQCPDEDRKK
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9417
(161 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1SB23 - symbol:SCAF8 "Uncharacterized protein"... 325 7.3e-28 1
UNIPROTKB|F1LPT8 - symbol:Rbm16 "Protein Rbm16" species:1... 324 8.5e-28 1
MGI|MGI:1925212 - symbol:Scaf8 "SR-related CTD-associated... 324 8.5e-28 1
UNIPROTKB|Q9UPN6 - symbol:SCAF8 "Protein SCAF8" species:9... 324 8.5e-28 1
ZFIN|ZDB-GENE-030131-4817 - symbol:wu:fd99c08 "wu:fd99c08... 322 1.4e-27 1
UNIPROTKB|F1NW30 - symbol:Gga.54017 "Uncharacterized prot... 321 1.8e-27 1
UNIPROTKB|F1MYK6 - symbol:LOC540182 "Uncharacterized prot... 317 4.7e-27 1
UNIPROTKB|F1PC86 - symbol:SCAF8 "Uncharacterized protein"... 312 1.6e-26 1
RGD|708362 - symbol:Scaf8 "SR-related CTD-associated fact... 312 1.6e-26 1
UNIPROTKB|B7Z888 - symbol:SCAF8 "Protein SCAF8" species:9... 312 1.8e-26 1
UNIPROTKB|F1P0Y4 - symbol:SCAF4 "Uncharacterized protein"... 307 4.4e-26 1
UNIPROTKB|I3LPZ9 - symbol:SCAF4 "Uncharacterized protein"... 307 4.6e-26 1
UNIPROTKB|O95104 - symbol:SCAF4 "Splicing factor, arginin... 307 4.7e-26 1
UNIPROTKB|F1LSM7 - symbol:Sfrs15 "Protein Sfrs15" species... 307 5.3e-26 1
UNIPROTKB|F1MTX3 - symbol:SCAF4 "Uncharacterized protein"... 297 5.6e-25 1
ZFIN|ZDB-GENE-030131-9003 - symbol:scaf4a "SR-related CTD... 296 6.7e-25 1
UNIPROTKB|F1LTF2 - symbol:Sfrs15 "Protein Sfrs15" species... 295 9.9e-25 1
FB|FBgn0034598 - symbol:CG4266 species:7227 "Drosophila m... 294 1.4e-24 1
UNIPROTKB|F1P0Y5 - symbol:SCAF4 "Uncharacterized protein"... 291 2.2e-24 1
UNIPROTKB|F1Q448 - symbol:SCAF4 "Uncharacterized protein"... 290 3.0e-24 1
UNIPROTKB|F1M994 - symbol:Sfrs15 "Protein Sfrs15" species... 288 3.5e-24 1
ZFIN|ZDB-GENE-050506-42 - symbol:scaf4b "SR-related CTD-a... 262 1.5e-21 1
UNIPROTKB|C9JLZ0 - symbol:SCAF4 "Splicing factor, arginin... 226 2.1e-17 1
WB|WBGene00017004 - symbol:nrd-1 species:6239 "Caenorhabd... 184 5.2e-13 1
>UNIPROTKB|F1SB23 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:CU633674
EMBL:FP565558 Ensembl:ENSSSCT00000004499 Uniprot:F1SB23
Length = 1347
Score = 325 (119.5 bits), Expect = 7.3e-28, P = 7.3e-28
Identities = 65/121 (53%), Positives = 88/121 (72%)
Query: 47 SQYKLPGLYV-----IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVE 101
S++ PGL + +N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVE
Sbjct: 67 SRFPGPGLCTDNMEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVE 126
Query: 102 KFIWKCKSQYKLPGLYVIDAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRK 160
KFI KCK +YK+PGLYVID+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+
Sbjct: 127 KFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKS 186
Query: 161 K 161
K
Sbjct: 187 K 187
Score = 205 (77.2 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 88 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 144
>UNIPROTKB|F1LPT8 [details] [associations]
symbol:Rbm16 "Protein Rbm16" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211007
Ensembl:ENSRNOT00000065733 ArrayExpress:F1LPT8 Uniprot:F1LPT8
Length = 1267
Score = 324 (119.1 bits), Expect = 8.5e-28, P = 8.5e-28
Identities = 61/103 (59%), Positives = 81/103 (78%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 205 (77.2 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>MGI|MGI:1925212 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1925212 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006366 GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG306894 CTD:22828
HOVERGEN:HBG055796 KO:K13191 OrthoDB:EOG45MN4V ChiTaRS:SCAF8
EMBL:AK122451 EMBL:BC038363 EMBL:BC075621 EMBL:AK032418
EMBL:AK161113 IPI:IPI00938443 RefSeq:NP_598884.2 UniGene:Mm.124373
UniGene:Mm.486401 ProteinModelPortal:Q6DID3 SMR:Q6DID3
PhosphoSite:Q6DID3 PaxDb:Q6DID3 PRIDE:Q6DID3
Ensembl:ENSMUST00000076734 GeneID:106583 KEGG:mmu:106583
UCSC:uc008aei.2 GeneTree:ENSGT00530000063946 InParanoid:Q6DID3
OMA:YRFPPIE NextBio:358280 Bgee:Q6DID3 Genevestigator:Q6DID3
Uniprot:Q6DID3
Length = 1268
Score = 324 (119.1 bits), Expect = 8.5e-28, P = 8.5e-28
Identities = 61/103 (59%), Positives = 81/103 (78%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 205 (77.2 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>UNIPROTKB|Q9UPN6 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006366 GO:GO:0016363
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 EMBL:AB029039 EMBL:AL121952
EMBL:AL136976 EMBL:AL591499 EMBL:BC070071 IPI:IPI01012434
RefSeq:NP_055707.3 UniGene:Hs.591329 PDB:2DIW PDB:3D9I PDB:3D9J
PDB:3D9K PDB:3D9L PDB:3D9M PDB:3D9N PDB:3D9O PDB:3D9P PDBsum:2DIW
PDBsum:3D9I PDBsum:3D9J PDBsum:3D9K PDBsum:3D9L PDBsum:3D9M
PDBsum:3D9N PDBsum:3D9O PDBsum:3D9P ProteinModelPortal:Q9UPN6
SMR:Q9UPN6 STRING:Q9UPN6 PhosphoSite:Q9UPN6 DMDM:30580495
PaxDb:Q9UPN6 PRIDE:Q9UPN6 Ensembl:ENST00000367178
Ensembl:ENST00000417268 GeneID:22828 KEGG:hsa:22828 UCSC:uc003qpz.3
CTD:22828 GeneCards:GC06P155055 HGNC:HGNC:20959 HPA:HPA035602
neXtProt:NX_Q9UPN6 PharmGKB:PA128394587 HOVERGEN:HBG055796
InParanoid:Q9UPN6 KO:K13191 OrthoDB:EOG45MN4V PhylomeDB:Q9UPN6
ChiTaRS:SCAF8 EvolutionaryTrace:Q9UPN6 GenomeRNAi:22828
NextBio:43242 ArrayExpress:Q9UPN6 Bgee:Q9UPN6 CleanEx:HS_RBM16
Genevestigator:Q9UPN6 GermOnline:ENSG00000146426 Uniprot:Q9UPN6
Length = 1271
Score = 324 (119.1 bits), Expect = 8.5e-28, P = 8.5e-28
Identities = 61/103 (59%), Positives = 81/103 (78%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 205 (77.2 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>ZFIN|ZDB-GENE-030131-4817 [details] [associations]
symbol:wu:fd99c08 "wu:fd99c08" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046660 "female sex differentiation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4817 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0046660 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:CABZ01087003 EMBL:CABZ01087004
EMBL:CABZ01087005 EMBL:CABZ01088109 EMBL:CU499333 IPI:IPI00900531
Ensembl:ENSDART00000112675 Bgee:E7FF46 Uniprot:E7FF46
Length = 1286
Score = 322 (118.4 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 61/103 (59%), Positives = 82/103 (79%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF + KDV+APRF++N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSKNIIGTFQNLYRCPTDDKSK 109
Score = 204 (76.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>UNIPROTKB|F1NW30 [details] [associations]
symbol:Gga.54017 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0043175 "RNA polymerase core enzyme
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:AADN02025403
EMBL:AADN02025404 IPI:IPI00579015 Ensembl:ENSGALT00000022182
Uniprot:F1NW30
Length = 1288
Score = 321 (118.1 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 62/109 (56%), Positives = 82/109 (75%)
Query: 54 LYVIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKL 113
L I + EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+
Sbjct: 1 LLPITTYQSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV 60
Query: 114 PGLYVIDAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
PGLYVID+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 61 PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 205 (77.2 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>UNIPROTKB|F1MYK6 [details] [associations]
symbol:LOC540182 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043175 "RNA polymerase core enzyme binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:YRFPPIE EMBL:DAAA02027254
EMBL:DAAA02027255 EMBL:DAAA02027256 IPI:IPI00699704
Ensembl:ENSBTAT00000045257 ArrayExpress:F1MYK6 Uniprot:F1MYK6
Length = 1268
Score = 317 (116.6 bits), Expect = 4.7e-27, P = 4.7e-27
Identities = 59/103 (57%), Positives = 81/103 (78%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+ ++L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FTEDLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 202 (76.2 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
+L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 DLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>UNIPROTKB|F1PC86 [details] [associations]
symbol:SCAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
CTD:22828 KO:K13191 GeneTree:ENSGT00530000063946 OMA:YRFPPIE
EMBL:AAEX03000284 RefSeq:XP_533458.3 Ensembl:ENSCAFT00000000878
GeneID:476252 KEGG:cfa:476252 Uniprot:F1PC86
Length = 1267
Score = 312 (114.9 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 59/99 (59%), Positives = 78/99 (78%)
Query: 64 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAII 123
L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVID+I+
Sbjct: 7 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIV 66
Query: 124 HQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 67 RQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 105
Score = 200 (75.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 39/56 (69%), Positives = 46/56 (82%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 62
>RGD|708362 [details] [associations]
symbol:Scaf8 "SR-related CTD-associated factor 8" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0006397 "mRNA processing" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IDA] [GO:0019904 "protein domain specific binding"
evidence=IMP] [GO:0043175 "RNA polymerase core enzyme binding"
evidence=ISO] [GO:0070063 "RNA polymerase binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:708362 GO:GO:0019904 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006366
GO:GO:0016363 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG306894 CTD:22828 HOVERGEN:HBG055796
KO:K13191 OrthoDB:EOG45MN4V EMBL:U49055 IPI:IPI00211007 PIR:T31420
RefSeq:NP_620794.1 UniGene:Rn.10529 ProteinModelPortal:Q63623
SMR:Q63623 PhosphoSite:Q63623 GeneID:245926 KEGG:rno:245926
UCSC:RGD:708362 HOGENOM:HOG000154078 InParanoid:Q63623
NextBio:623189 ArrayExpress:Q63623 Genevestigator:Q63623
Uniprot:Q63623
Length = 1268
Score = 312 (114.9 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R Q + KDV APRF+ N+ TF +++CP +D+ K
Sbjct: 67 DSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSK 109
Score = 205 (77.2 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 66
>UNIPROTKB|B7Z888 [details] [associations]
symbol:SCAF8 "Protein SCAF8" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:AL121952 EMBL:AL136976 EMBL:AL591499
UniGene:Hs.591329 HGNC:HGNC:20959 HOVERGEN:HBG055796 ChiTaRS:SCAF8
OMA:YRFPPIE HOGENOM:HOG000154078 EMBL:AK303001 IPI:IPI00871240
SMR:B7Z888 STRING:B7Z888 Ensembl:ENST00000367186 UCSC:uc010kji.3
Uniprot:B7Z888
Length = 1337
Score = 312 (114.9 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 59/99 (59%), Positives = 78/99 (78%)
Query: 64 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAII 123
L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVID+I+
Sbjct: 77 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIV 136
Query: 124 HQARLQF-KYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
Q+R QF + KDV+APRF+ N+ TF +++CP +D+ K
Sbjct: 137 RQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSK 175
Score = 200 (75.5 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 39/56 (69%), Positives = 46/56 (82%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
L S+N KPPISKAK+T I K A+KA +YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 77 LYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVI 132
>UNIPROTKB|F1P0Y4 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AADN02010755 IPI:IPI00596341
Ensembl:ENSGALT00000025555 ArrayExpress:F1P0Y4 Uniprot:F1P0Y4
Length = 1092
Score = 307 (113.1 bits), Expect = 4.4e-26, P = 4.4e-26
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 64 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 178 (67.7 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 47/123 (38%), Positives = 69/123 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
EL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 10 ELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 69
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVI 119
++ T + + + + AT Y Y+ S +K I + + ++ G++ I
Sbjct: 70 VRQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKI 125
Query: 120 DAI 122
+ I
Sbjct: 126 EII 128
>UNIPROTKB|I3LPZ9 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:FP325217
EMBL:FP325269 Ensembl:ENSSSCT00000030551 Uniprot:I3LPZ9
Length = 1132
Score = 307 (113.1 bits), Expect = 4.6e-26, P = 4.6e-26
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 64 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 178 (67.7 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 47/123 (38%), Positives = 69/123 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
EL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 10 ELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 69
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVI 119
++ T + + + + AT Y Y+ S +K I + + ++ G++ I
Sbjct: 70 VRQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKI 125
Query: 120 DAI 122
+ I
Sbjct: 126 EII 128
>UNIPROTKB|O95104 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AF023142 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG306894 EMBL:AL834304 EMBL:AL117417 EMBL:AP001711
EMBL:BC014921 EMBL:BC052286 EMBL:BC064990 EMBL:AB032998
IPI:IPI00181702 IPI:IPI00397794 RefSeq:NP_001138916.1
RefSeq:NP_001138917.1 RefSeq:NP_065757.1 UniGene:Hs.17255
ProteinModelPortal:O95104 SMR:O95104 IntAct:O95104
MINT:MINT-1692995 STRING:O95104 PhosphoSite:O95104 PaxDb:O95104
PRIDE:O95104 Ensembl:ENST00000286835 Ensembl:ENST00000399804
GeneID:57466 KEGG:hsa:57466 UCSC:uc002ypd.2 UCSC:uc002ype.2
CTD:57466 GeneCards:GC21M033044 HGNC:HGNC:19304 HPA:HPA018319
HPA:HPA018668 HPA:HPA021504 HPA:HPA028807 neXtProt:NX_O95104
PharmGKB:PA134903281 HOGENOM:HOG000143432 HOVERGEN:HBG055644
InParanoid:O95104 KO:K13167 OMA:QDPVHHQ OrthoDB:EOG498V17
GenomeRNAi:57466 NextBio:63678 ArrayExpress:O95104 Bgee:O95104
CleanEx:HS_SFRS15 Genevestigator:O95104 GermOnline:ENSG00000156304
Uniprot:O95104
Length = 1147
Score = 307 (113.1 bits), Expect = 4.7e-26, P = 4.7e-26
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 64 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 178 (67.7 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 47/123 (38%), Positives = 69/123 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
EL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 10 ELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 69
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVI 119
++ T + + + + AT Y Y+ S +K I + + ++ G++ I
Sbjct: 70 VRQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKI 125
Query: 120 DAI 122
+ I
Sbjct: 126 EII 128
>UNIPROTKB|F1LSM7 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00530000063946 IPI:IPI00211011
Ensembl:ENSRNOT00000047741 ArrayExpress:F1LSM7 Uniprot:F1LSM7
Length = 1226
Score = 307 (113.1 bits), Expect = 5.3e-26, P = 5.3e-26
Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 64 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 178 (67.7 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 47/123 (38%), Positives = 69/123 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
EL S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 10 ELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 69
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVI 119
++ T + + + + AT Y Y+ S +K I + + ++ G++ I
Sbjct: 70 VRQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKI 125
Query: 120 DAI 122
+ I
Sbjct: 126 EII 128
>UNIPROTKB|F1MTX3 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:DAAA02000059
IPI:IPI00711648 Ensembl:ENSBTAT00000025104 Uniprot:F1MTX3
Length = 1148
Score = 297 (109.6 bits), Expect = 5.6e-25, P = 5.6e-25
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 61 NQELL-SINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
NQE+L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 8 NQEILFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVI 67
Query: 120 DAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 68 DSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 110
Score = 173 (66.0 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWN 61
L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 12 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 71
Query: 62 QELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVID 120
++ T + + + + AT Y Y+ S +K I + + ++ G++ I+
Sbjct: 72 RQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIE 127
Query: 121 AI 122
I
Sbjct: 128 II 129
>ZFIN|ZDB-GENE-030131-9003 [details] [associations]
symbol:scaf4a "SR-related CTD-associated factor
4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9003 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 EMBL:AL837524 EMBL:AL935277
IPI:IPI00993297 Ensembl:ENSDART00000108981 Uniprot:E7F172
Length = 1104
Score = 296 (109.3 bits), Expect = 6.7e-25, P = 6.7e-25
Identities = 58/106 (54%), Positives = 75/106 (70%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +N EL S+ TKPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGL
Sbjct: 4 VNAFNHELFSLMDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YV+D+I+ Q+R QF KDV+ PRF +N+ TF + CP EDR K
Sbjct: 64 YVVDSIVRQSRHQFGADKDVFGPRFTKNITGTFENLCLCPTEDRSK 109
Score = 186 (70.5 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
EL S+ TKPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYV+
Sbjct: 10 ELFSLMDTKPPISRAKMISITKSAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVVDSI 69
Query: 61 -NQELLSINSTK----PPISKAKITGIVK-LALKATHYYKYVVQSVEKFIWKCKSQYKL 113
Q + K P +K ITG + L L T +V+ + +W+ +K+
Sbjct: 70 VRQSRHQFGADKDVFGPRFTK-NITGTFENLCLCPTEDRSKIVRVLN--LWQKNGVFKI 125
>UNIPROTKB|F1LTF2 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00950875 PRIDE:F1LTF2 Ensembl:ENSRNOT00000042311
ArrayExpress:F1LTF2 Uniprot:F1LTF2
Length = 1214
Score = 295 (108.9 bits), Expect = 9.9e-25, P = 9.9e-25
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVID 120
N+ L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVID
Sbjct: 8 NRHLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVID 67
Query: 121 AIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 68 SIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 173 (66.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWN 61
L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 11 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 70
Query: 62 QELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVID 120
++ T + + + + AT Y Y+ S +K I + + ++ G++ I+
Sbjct: 71 RQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIE 126
Query: 121 AI 122
I
Sbjct: 127 II 128
>FB|FBgn0034598 [details] [associations]
symbol:CG4266 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K13191 GeneTree:ENSGT00530000063946 RefSeq:NP_001097394.1
UniGene:Dm.4151 ProteinModelPortal:A8DYK5 SMR:A8DYK5 STRING:A8DYK5
EnsemblMetazoa:FBtr0113100 GeneID:37411 KEGG:dme:Dmel_CG4266
UCSC:CG4266-RB FlyBase:FBgn0034598 OMA:RAITISW OrthoDB:EOG4NK99F
PhylomeDB:A8DYK5 GenomeRNAi:37411 NextBio:803495 Bgee:A8DYK5
Uniprot:A8DYK5
Length = 1306
Score = 294 (108.6 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 56/103 (54%), Positives = 76/103 (73%)
Query: 60 WNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 119
+N EL + ++PPISKAK+ I K A++A YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 7 FNNELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVI 66
Query: 120 DAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
D+I+ Q+R Q+ KD++APRF RNL TF +F+C ED+ +
Sbjct: 67 DSIVRQSRHQYGMDKDLFAPRFQRNLTETFANLFRCAPEDKSR 109
Score = 181 (68.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL + ++PPISKAK+ I K A++A YK+VVQSVEKFI KCK +YK+PGLYVI
Sbjct: 10 ELSGLYDSRPPISKAKMAAITKSAMRAIKLYKHVVQSVEKFILKCKPEYKVPGLYVI 66
>UNIPROTKB|F1P0Y5 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AADN02010755
IPI:IPI00681248 Ensembl:ENSGALT00000025554 ArrayExpress:F1P0Y5
Uniprot:F1P0Y5
Length = 1092
Score = 291 (107.5 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 57/102 (55%), Positives = 74/102 (72%)
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVID 120
N L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVID
Sbjct: 8 NYMLFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVID 67
Query: 121 AIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 68 SIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 109
Score = 173 (66.0 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWN 61
L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 11 LFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 70
Query: 62 QELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVID 120
++ T + + + + AT Y Y+ S +K I + + ++ G++ I+
Sbjct: 71 RQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIE 126
Query: 121 AI 122
I
Sbjct: 127 II 128
>UNIPROTKB|F1Q448 [details] [associations]
symbol:SCAF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 OMA:QDPVHHQ EMBL:AAEX03016485
Ensembl:ENSCAFT00000014079 Uniprot:F1Q448
Length = 1126
Score = 290 (107.1 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 56/100 (56%), Positives = 74/100 (74%)
Query: 63 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAI 122
+L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVID+I
Sbjct: 2 QLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 61
Query: 123 IHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 62 VRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 101
Score = 175 (66.7 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 46/123 (37%), Positives = 69/123 (56%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEW 60
+L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 2 QLFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSI 61
Query: 61 NQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVI 119
++ T + + + + AT Y Y+ S +K I + + ++ G++ I
Sbjct: 62 VRQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKI 117
Query: 120 DAI 122
+ I
Sbjct: 118 EII 120
>UNIPROTKB|F1M994 [details] [associations]
symbol:Sfrs15 "Protein Sfrs15" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00530000063946 IPI:IPI00454233
Ensembl:ENSRNOT00000002881 ArrayExpress:F1M994 Uniprot:F1M994
Length = 917
Score = 288 (106.4 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 56/99 (56%), Positives = 73/99 (73%)
Query: 64 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIDAII 123
L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVID+I+
Sbjct: 47 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 106
Query: 124 HQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 107 RQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 145
Score = 173 (66.0 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 2 LLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVIGEWN 61
L S+ KPPIS+AK+ I K A+KA YK+VVQ VEKFI KCK +YK+PGLYVI
Sbjct: 47 LFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV 106
Query: 62 QELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKF-IWKCKSQYKLPGLYVID 120
++ T + + + + AT Y Y+ S +K I + + ++ G++ I+
Sbjct: 107 RQSRHQFGTDKDVFGPRFSKNIT----ATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIE 162
Query: 121 AI 122
I
Sbjct: 163 II 164
>ZFIN|ZDB-GENE-050506-42 [details] [associations]
symbol:scaf4b "SR-related CTD-associated factor 4b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050506-42 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 HOVERGEN:HBG055644 EMBL:BC065329 IPI:IPI00619155
UniGene:Dr.81696 ProteinModelPortal:Q6P118 Uniprot:Q6P118
Length = 745
Score = 262 (97.3 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 50/106 (47%), Positives = 72/106 (67%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +N E+ S+ PPIS+AK+ + K +KA YK+VVQ VEKFI +CK K+PGL
Sbjct: 4 VNAFNGEMSSMMDMTPPISRAKMMSVTKAGIKAIRLYKHVVQIVEKFIKRCKPDLKVPGL 63
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YV+D+II Q+R QF KD++ PRF +N TF +F+CP++D+ K
Sbjct: 64 YVVDSIIRQSRHQFGADKDLFGPRFLKNFTVTFQNLFECPEDDKGK 109
Score = 152 (58.6 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
E+ S+ PPIS+AK+ + K +KA YK+VVQ VEKFI +CK K+PGLYV+
Sbjct: 10 EMSSMMDMTPPISRAKMMSVTKAGIKAIRLYKHVVQIVEKFIKRCKPDLKVPGLYVV 66
>UNIPROTKB|C9JLZ0 [details] [associations]
symbol:SCAF4 "Splicing factor, arginine/serine-rich 15"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
RefSeq:NP_001138916.1 UniGene:Hs.17255 GeneID:57466 KEGG:hsa:57466
CTD:57466 HGNC:HGNC:19304 HOGENOM:HOG000143432 KO:K13167
GenomeRNAi:57466 NextBio:63678 EMBL:AP000254 EMBL:AP000255
IPI:IPI00923625 SMR:C9JLZ0 STRING:C9JLZ0 Ensembl:ENST00000434667
UCSC:uc010glu.2 Uniprot:C9JLZ0
Length = 1132
Score = 226 (84.6 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 49/106 (46%), Positives = 67/106 (63%)
Query: 57 IGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGL 116
+ +NQEL S+ KPPIS+AK+ I K A+KA KCK +YK+PGL
Sbjct: 4 VNAFNQELFSLMDMKPPISRAKMILITKAAIKAI---------------KCKPEYKVPGL 48
Query: 117 YVIDAIIHQARLQFKY-KDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
YVID+I+ Q+R QF KDV+ PRF++N+ TF Y++ CP ED+ K
Sbjct: 49 YVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSK 94
>WB|WBGene00017004 [details] [associations]
symbol:nrd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
EMBL:FO080863 GeneTree:ENSGT00530000063946 KO:K13167
eggNOG:NOG326061 OMA:RAITISW RefSeq:NP_491403.1
ProteinModelPortal:O01864 SMR:O01864 STRING:O01864 PaxDb:O01864
EnsemblMetazoa:D1007.7 GeneID:172064 KEGG:cel:CELE_D1007.7
UCSC:D1007.7 CTD:172064 WormBase:D1007.7 HOGENOM:HOG000022265
InParanoid:O01864 NextBio:873863 Uniprot:O01864
Length = 988
Score = 184 (69.8 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 56 VIGEWNQELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPG 115
V+ +N EL S+ +K +SK KI I K A+KA YK+VV SVEK I KCK +L
Sbjct: 5 VMKSFNNELSSLFDSKN-MSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKPDQRLNV 63
Query: 116 LYVIDAIIHQARLQFKYKDVYAPRFARNLYRTFGYVFQCPDEDRKK 161
LYVID+I+ ++ Q K KD + PRF + + + +C +++ +
Sbjct: 64 LYVIDSIVRASKHQLKEKDTFGPRFMKQFDKFLMPLLKCGQKEKMR 109
Score = 114 (45.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 30/57 (52%), Positives = 36/57 (63%)
Query: 1 ELLSINSTKPPISKAKITGIVKLALKATHYYKYVVQSVEKFIWKCKSQYKLPGLYVI 57
EL S+ +K +SK KI I K A+KA YK+VV SVEK I KCK +L LYVI
Sbjct: 12 ELSSLFDSKN-MSKNKIQDITKAAIKAKSQYKHVVFSVEKLINKCKPDQRLNVLYVI 67
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 161 161 0.00074 107 3 11 22 0.49 31
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 567 (60 KB)
Total size of DFA: 146 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.19u 0.08s 15.27t Elapsed: 00:00:04
Total cpu time: 15.20u 0.08s 15.28t Elapsed: 00:00:05
Start: Thu Aug 15 13:25:46 2013 End: Thu Aug 15 13:25:51 2013