BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9419
(739 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 187 DVDEC-LGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
DVDEC LG +PC + C+N G F+C C +G TG PR E +
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG------------PRCE--------I 43
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVD-KECSP 304
DV+EC+ +PC + A C+++ G F+C+C G G C V+ EC+
Sbjct: 44 DVNECVS-NPCQNDATCLDQIGEFQCICMPGYEG--------------VHCEVNTDECAS 88
Query: 305 SLQCRGGACVDPCRSVEC 322
S G C+D +C
Sbjct: 89 SPCLHNGRCLDKINEFQC 106
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 505 QDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKG----NPYVQCVG------------ 548
QD C GA C +C+ T GS ECQC GY G +CV
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 62
Query: 549 -GSVECQCPAGYKGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGN 603
G +C C GY+G V C V+ DEC SS C N C++ + C C G G+
Sbjct: 63 IGEFQCICMPGYEG---VHCEVNTDECASS-PCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 61/156 (39%), Gaps = 45/156 (28%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYE 125
+DVDEC+ + C CIN GS+ CQC L G T R C+
Sbjct: 3 QDVDECSLGANPCEHAGKCINTLGSFECQC--------LQGYTGPR--------CEIDVN 46
Query: 126 RCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGC 185
CV C ND C F QC C+ GY G + C
Sbjct: 47 ECVSNPC---------QNDA-TCLDQIGEF--------------QCICMPGYEG---VHC 79
Query: 186 -LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTG 220
++ DEC SPC + C+++ F+C CP G TG
Sbjct: 80 EVNTDEC-ASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 37/138 (26%)
Query: 187 DVDEC-LGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
DVDEC LG +PC + C+N G F+C C +G TG PR E +
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG------------PRCE--------I 41
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVD-KECSP 304
DV+EC+ +PC + A C+++ G F+C+C G G C V+ EC+
Sbjct: 42 DVNECVS-NPCQNDATCLDQIGEFQCICMPGYEG--------------VHCEVNTDECAS 86
Query: 305 SLQCRGGACVDPCRSVEC 322
S G C+D +C
Sbjct: 87 SPCLHNGRCLDKINEFQC 104
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 505 QDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKG----NPYVQCVG------------ 548
QD C GA C +C+ T GS ECQC GY G +CV
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 549 -GSVECQCPAGYKGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGN 603
G +C C GY+G V C V+ DEC SS C N C++ + C C G G+
Sbjct: 61 IGEFQCICMPGYEG---VHCEVNTDECASS-PCLHNGRCLDKINEFQCECPTGFTGH 113
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 45/156 (28%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYE 125
+DVDEC+ + C CIN GS+ CQC L G T R C+
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQC--------LQGYTGPR--------CEIDVN 44
Query: 126 RCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGC 185
CV C A + + QC C+ GY G + C
Sbjct: 45 ECVSNPCQNDATCLDQIGEF------------------------QCICMPGYEG---VHC 77
Query: 186 -LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTG 220
++ DEC SPC + C+++ F+C CP G TG
Sbjct: 78 EVNTDEC-ASSPCLHNGRCLDKINEFQCECPTGFTG 112
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 63/157 (40%), Gaps = 21/157 (13%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
D+DEC S + G VC N PGS+ C+C S+ DP ++ C ++
Sbjct: 3 DIDECESSPCING---VCKNSPGSFICECSSESTLDPTKTICIETIK----GTC---WQT 52
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCT--PADPPQCTCLAGYTGEATLG 184
+ C ++N C + CT DP C GY+
Sbjct: 53 VIDGRC------EININGATLKSQCCSSLGAAWGSPCTLCQVDP---ICGKGYSRIKGTQ 103
Query: 185 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
C D+DEC + LCVN +G FKC CP G T D
Sbjct: 104 CEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLD 140
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 53/140 (37%), Gaps = 48/140 (34%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGS---------------- 230
D+DEC SPC + +C N G F C C +T DP C+ +
Sbjct: 3 DIDECES-SPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 231 -------------------GSPRTECRVDKV-----------GCLDVDECLGVSPCASSA 260
GSP T C+VD + C D+DEC +
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNG 120
Query: 261 LCVNEKGGFKCVCPKGTTGD 280
LCVN +G FKC CP G T D
Sbjct: 121 LCVNTRGSFKCQCPSGMTLD 140
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 53 CPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGD 102
C KG+ + CED+DEC +C G +C+N GS+ CQCP + D
Sbjct: 92 CGKGYSRIKGTQCEDIDECEVFPGVCKNG-LCVNTRGSFKCQCPSGMTLD 140
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 555 CPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
C GY QC DIDEC N +C+NT GS+ C+C G
Sbjct: 92 CGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSG 136
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 316 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 373
Query: 230 SGS 232
GS
Sbjct: 374 VGS 376
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G + L V + C D+DEC C S
Sbjct: 305 SHVCNDLKIGYECLCPDG-----FQL-------------VAQRRCEDIDECQDPDTC--S 344
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 291
LCVN +GG+KC C +G DP+T C GS
Sbjct: 345 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 376
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFV-ACTP 610
EC CP G++ +C DIDEC +TC + +C+N G Y C+C+EG +P AC
Sbjct: 316 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 373
Query: 611 VAVVPH 616
V + +
Sbjct: 374 VGSIAY 379
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 334 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 391
Query: 230 SGS 232
GS
Sbjct: 392 VGS 394
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G + L V + C D+DEC C S
Sbjct: 323 SHVCNDLKIGYECLCPDG-----FQL-------------VAQRRCEDIDECQDPDTC--S 362
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 291
LCVN +GG+KC C +G DP+T C GS
Sbjct: 363 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFV-ACTP 610
EC CP G++ +C DIDEC +TC + +C+N G Y C+C+EG +P AC
Sbjct: 334 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 391
Query: 611 VAVVPH 616
V + +
Sbjct: 392 VGSIAY 397
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 7 NTLECQCRPPYQIVAGECT--LATCGTQGQCP--------GGAECVNIAGGVSYCACPKG 56
N C+C P + + T + TC +C ++C N G C C G
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYD-CVCSPG 75
Query: 57 FRP---------KEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
+ P + + C+DVDEC+ +H C VC N GSY+C+C P
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRP 125
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWS- 575
CG + C T GS +C C GY+ V G+ +K C D+DEC S
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEP------VSGA------KTFKNESENTCQDVDECSSG 102
Query: 576 SNTCGSNAVCINTPGSYDCRCKEG 599
+ C S+ VC NT GSY CRC+ G
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPG 126
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 185 CLDVDECLGVSP--CASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKV 242
C D++EC +S C + C N +G + CVC G +P + G+ + + E +
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY--EPVS----GAKTFKNE---SEN 91
Query: 243 GCLDVDECL-GVSPCASSALCVNEKGGFKCVCPKG 276
C DVDEC G C SS +C N G + C C G
Sbjct: 92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 177 YTGEATLGCLDVDECL-GVSPCASSALCVNEKGGFKCVCPKG 217
+ E+ C DVDEC G C SS +C N G + C C G
Sbjct: 85 FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPG 126
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 62 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 119
Query: 230 SGS 232
GS
Sbjct: 120 VGS 122
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G + L V + C D+DEC C S
Sbjct: 51 SHVCNDLKIGYECLCPDG-----FQL-------------VAQRRCEDIDECQDPDTC--S 90
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 291
LCVN +GG+KC C +G DP+T C GS
Sbjct: 91 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 122
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFV-ACTP 610
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P AC
Sbjct: 62 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKA 119
Query: 611 VAVVPH 616
V + +
Sbjct: 120 VGSIAY 125
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 37 GGAECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGA---V 83
G EC++ GG S+ C CP GF+ CED+DEC + P +
Sbjct: 39 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD------PDTCSQL 92
Query: 84 CINHPGSYTCQCPPNSSGDP 103
C+N G Y CQC DP
Sbjct: 93 CVNLEGGYKCQCEEGFQLDP 112
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 22 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 79
Query: 230 SGS 232
GS
Sbjct: 80 VGS 82
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G + L V + C D+DEC C S
Sbjct: 11 SHVCNDLKIGYECLCPDG-----FQL-------------VAQRRCEDIDECQDPDTC--S 50
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 291
LCVN +GG+KC C +G DP+T C GS
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 82
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFV-ACTP 610
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P AC
Sbjct: 22 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKA 79
Query: 611 VAVVPH 616
V + +
Sbjct: 80 VGSIAY 85
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 51 CACPKGFRPKEDGYCEDVDECAESRHLCGP---GAVCINHPGSYTCQCPPNSSGDP 103
C CP GF+ CED+DEC + P +C+N G Y CQC DP
Sbjct: 23 CLCPDGFQLVAQRRCEDIDECQD------PDTCSQLCVNLEGGYKCQCEEGFQLDP 72
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 545 QCVG--GSVECQCPAGY--KGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGN 600
QC+ GS C+CP GY GN +CVD DEC N CG N C N G ++C C+EG
Sbjct: 18 QCINTDGSYRCECPFGYILAGN---ECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGF 73
Query: 601 AGNPFVAC 608
P + C
Sbjct: 74 EPGPMMTC 81
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 186 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
+D+DEC C C+N G ++C CP G + +G+ C+
Sbjct: 3 VDMDECKEPDVCKHGQ-CINTDGSYRCECP---------FGYILAGNE----------CV 42
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKG 276
D DEC +PC + C N GGF+C C +G
Sbjct: 43 DTDECSVGNPCGNGT-CKNVIGGFECTCEEG 72
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 160 NAQCTPAD-PPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKG 217
+ QC D +C C GY A C+D DEC +PC + C N GGF+C C +G
Sbjct: 16 HGQCINTDGSYRCECPFGYI-LAGNECVDTDECSVGNPCGNGT-CKNVIGGFECTCEEG 72
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFV-ACTP 610
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P AC
Sbjct: 24 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKA 81
Query: 611 V 611
V
Sbjct: 82 V 82
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 24 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G V + C D+DEC C S
Sbjct: 13 SHVCNDLKIGYECLCPDGFQ------------------LVAQRRCEDIDECQDPDTC--S 52
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGC 286
LCVN +GG+KC C +G DP+T C
Sbjct: 53 QLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 40 ECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPG 89
EC++ GG S+ C CP GF+ CED+DEC + +C+N G
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVNLEG 60
Query: 90 SYTCQCPPNSSGDP 103
Y CQC DP
Sbjct: 61 GYKCQCEEGFQLDP 74
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin
K- Dependent Protein S
Length = 87
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 37 GGAECVNIAGGVSYCACPKGFRPK-EDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQC 95
G A C NI G C CP+G+R + CED+DEC+E ++C +C+N+PG YTC C
Sbjct: 14 GTAVCKNIPGDFE-CECPEGYRYNLKSKSCEDIDECSE--NMCA--QLCVNYPGGYTCYC 68
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 547 VGGSVECQCPAGYKGNPYVQ-CVDIDECWSSNTCGSNAVCINTPGSYDCRC 596
+ G EC+CP GY+ N + C DIDEC S N C +C+N PG Y C C
Sbjct: 21 IPGDFECECPEGYRYNLKSKSCEDIDEC-SENMCAQ--LCVNYPGGYTCYC 68
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
DVDEC +A+C N G F+C CP+G Y L C D
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYR---YNLK--------------SKSCED 44
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVC 273
+DEC S + LCVN GG+ C C
Sbjct: 45 IDEC---SENMCAQLCVNYPGGYTCYC 68
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCP 96
+DVDEC+ +CG AVC N PG + C+CP
Sbjct: 1 KDVDECSLKPSICGT-AVCKNIPGDFECECP 30
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATC 624
D+DEC + AVC N PG ++C C EG N + SCED C
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYN---------LKSKSCEDIDEC 48
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 24 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 20/87 (22%)
Query: 200 SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASS 259
S +C + K G++C+CP G V + C D+DEC C S
Sbjct: 13 SHVCNDLKIGYECLCPDGFQ------------------LVAQRRCEDIDECQDPDTC--S 52
Query: 260 ALCVNEKGGFKCVCPKGTTGDPYTLGC 286
LCVN +GG+KC C +G DP+T C
Sbjct: 53 QLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVA 607
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P
Sbjct: 24 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTK 77
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 40 ECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPG 89
EC++ GG S+ C CP GF+ CED+DEC + +C+N G
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVNLEG 60
Query: 90 SYTCQCPPNSSGDP 103
Y CQC DP
Sbjct: 61 GYKCQCEEGFQLDP 74
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVG 243
G + +ECL + S +C + K G++C+CP G V +
Sbjct: 25 GAMGTNECLDNNG-GCSHVCNDLKIGYECLCPDGFQ------------------LVAQRR 65
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 66 CEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 51 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P
Sbjct: 51 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 101
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 37 GGAECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCIN 86
G EC++ GG S+ C CP GF+ CED+DEC + +C+N
Sbjct: 28 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVN 84
Query: 87 HPGSYTCQCPPNSSGDP 103
G Y CQC DP
Sbjct: 85 LEGGYKCQCEEGFQLDP 101
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVG 243
G + +ECL + S +C + K G++C+CP G V +
Sbjct: 25 GAMGTNECLDNNG-GCSYVCNDLKIGYECLCPDGFQ------------------LVAQRR 65
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 66 CEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 51 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P
Sbjct: 51 ECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 101
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 37 GGAECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCIN 86
G EC++ GG SY C CP GF+ CED+DEC + +C+N
Sbjct: 28 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVN 84
Query: 87 HPGSYTCQCPPNSSGDP 103
G Y CQC DP
Sbjct: 85 LEGGYKCQCEEGFQLDP 101
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVG 243
G + +ECL + S +C + K G++C+CP G V +
Sbjct: 1 GAMGTNECLDNNG-GCSHVCNDLKIGYECLCPDGFQ------------------LVAQRR 41
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 42 CEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVA 607
EC CP G++ +C DIDEC +TC + +C+N G Y C+C+EG +P
Sbjct: 27 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTK 80
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 27 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 37 GGAECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCIN 86
G EC++ GG S+ C CP GF+ CED+DEC + +C+N
Sbjct: 4 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVN 60
Query: 87 HPGSYTCQCPPNSSGDP 103
G Y CQC DP
Sbjct: 61 LEGGYKCQCEEGFQLDP 77
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVG 243
G + +ECL + S +C + K G++C+CP G V +
Sbjct: 1 GAMGTNECLDNNG-GCSYVCNDLKIGYECLCPDGFQ------------------LVAQRR 41
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 42 CEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 552 ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
EC CP G++ +C DIDEC +TC + +C+N G Y C+C+EG +P
Sbjct: 27 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDP 77
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 27 ECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 37 GGAECVNIAGGVSY----------CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCIN 86
G EC++ GG SY C CP GF+ CED+DEC + +C+N
Sbjct: 4 GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC---SQLCVN 60
Query: 87 HPGSYTCQCPPNSSGDP 103
G Y CQC DP
Sbjct: 61 LEGGYKCQCEEGFQLDP 77
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 506 DRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYV 565
D C LCG G QC+ T G EC+C GY+ +
Sbjct: 2 DIDECRISPDLCGRG-QCVNTPGDFECKCDEGYESGFMMM-------------------K 41
Query: 566 QCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVA 607
C+DIDEC VC NT GSY C C G+ +P ++
Sbjct: 42 NCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNIS 83
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 37 GGAECVNIAGGVSYCACPKGFRPKEDGY-----CEDVDECAESRHLCGPGAVCINHPGSY 91
G +CVN G C C +G+ E G+ C D+DEC LC G VC N GSY
Sbjct: 14 GRGQCVNTPGDFE-CKCDEGY---ESGFMMMKNCMDIDECQRDPLLC-RGGVCHNTEGSY 68
Query: 92 TCQCPPNSSGDP 103
C+CPP P
Sbjct: 69 RCECPPGHQLSP 80
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
D+DEC CVN G F+C C +G + C+D
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK----------------NCMD 45
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 287
+DEC +C N +G ++C CP G P C+
Sbjct: 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 164 TPADPPQCTCLAGYTGEATL--GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
TP D +C C GY + C+D+DEC +C N +G ++C CP G
Sbjct: 21 TPGDF-ECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLS 79
Query: 222 PYTLGCV 228
P C+
Sbjct: 80 PNISACI 86
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATC 624
DIDEC S C+NTPG ++C+C EG F+ + DP C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG-FMMMKNCMDIDECQRDPLLC 56
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPN-SSGDPLLGCTHARVQCSRD 117
D+DEC S LCG G C+N PG + C+C SG ++ +C RD
Sbjct: 2 DIDECRISPDLCGRGQ-CVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRD 52
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 132 CVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDEC 191
CVC + ++ H+C+ C + +C A C P C C GY + C D+DEC
Sbjct: 26 CVCAEGFAPIPHEPHRCQMFCNQTACP--ADCDPNTQASCECPEGYILDDGFICTDIDEC 83
Query: 192 LGVSPCASSALCVNEKGGFKCVC 214
C S +C N G F+C+C
Sbjct: 84 ENGGFC--SGVCHNLPGTFECIC 104
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 553 CQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNA 601
C+CP GY + C DIDEC + C + VC N PG+++C C +A
Sbjct: 63 CECPEGYILDDGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSA 109
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 51 CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSS 100
C CP+G+ + C D+DEC G VC N PG++ C C P+S+
Sbjct: 63 CECPEGYILDDGFICTDIDECENGGFCSG---VCHNLPGTFECICGPDSA 109
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 132 CVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDEC 191
CVC + ++ H+C+ C + +C A C P C C GY + C D+DEC
Sbjct: 26 CVCAEGFAPIPHEPHRCQLFCNQTACP--ADCDPNTQASCECPEGYILDDGFICTDIDEC 83
Query: 192 LGVSPCASSALCVNEKGGFKCVC 214
C S +C N G F+C+C
Sbjct: 84 ENGGFC--SGVCHNLPGTFECIC 104
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 553 CQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNA 601
C+CP GY + C DIDEC + C + VC N PG+++C C +A
Sbjct: 63 CECPEGYILDDGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSA 109
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 51 CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSS 100
C CP+G+ + C D+DEC E+ C VC N PG++ C C P+S+
Sbjct: 63 CECPEGYILDDGFICTDIDEC-ENGGFC--SGVCHNLPGTFECICGPDSA 109
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 40 ECVNIAGGVSYCACPKGFRPKEDGY-CEDVDECAESRHLCGPGAVCINHPGSYTCQC 95
+C I G V C C G+R EDG C+DV+ECAE + C G C N G++ C C
Sbjct: 16 KCQMIRGAVQ-CTCHTGYRLTEDGRTCQDVNECAEEGY-CSQG--CTNSEGAFQCWC 68
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 170 QCTCLAGY-TGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
QCTC GY E C DV+EC C+ C N +G F+C C G P C
Sbjct: 25 QCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRPDRRSCK 82
Query: 229 GSG 231
G
Sbjct: 83 ALG 85
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 545 QCVGGSVECQCPAGYKGNPYVQ-CVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGN 603
Q + G+V+C C GY+ + C D++EC C C N+ G++ C C+ G
Sbjct: 18 QMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELR 75
Query: 604 P 604
P
Sbjct: 76 P 76
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 42 VNIAGGVSYCACPKGFRPKE-DGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCP 96
VN + C +GFRP ED+DEC E LC G CIN GS+ C+CP
Sbjct: 95 VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLC-QGGKCINTFGSFQCRCP 149
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 62/164 (37%), Gaps = 27/164 (16%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPL-LGCTHARV-QCSRDADCDGPY 124
DV+EC + C G C+N PGSY C CPP+ +P +GC R C D G
Sbjct: 2 DVNECLDP-TTCISGN-CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 125 ERCV----------RAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCL 174
+A+C C G +PCE A T C
Sbjct: 60 GDTACSNEIGVGVSKASCCCSL--------GKAWGTPCEXCP----AVNTSEYKILCPGG 107
Query: 175 AGYT-GEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKG 217
G+ T+ D+DEC + C+N G F+C CP G
Sbjct: 108 EGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 534 CPAGYKGNPYVQCVGGSVECQCPAGYKGNPY-VQCVDIDECWSSNTCGSNAVCINTPGSY 592
CPA + C GG G++ NP V DIDEC CINT GS+
Sbjct: 92 CPAVNTSEYKILCPGGE-------GFRPNPITVILEDIDECQELPGLCQGGKCINTFGSF 144
Query: 593 DCRCKEGNAGN 603
CRC G N
Sbjct: 145 QCRCPTGYYLN 155
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 501 TAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGN 541
T +D C GLC G +C+ T GS +C+CP GY N
Sbjct: 116 TVILEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLN 155
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 232
DV+ECL + C S CVN G + C CP +P +GCV + S
Sbjct: 2 DVNECLDPTTCISGN-CVNTPGSYICDCPPDFELNPTRVGCVDTRS 46
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 42 VNIAGGVSYCACPKGFRPKE-DGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCP 96
VN + C +GFRP ED+DEC E LC G CIN GS+ C+CP
Sbjct: 95 VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLC-QGGKCINTFGSFQCRCP 149
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 63/168 (37%), Gaps = 35/168 (20%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPL-LGCTHARV-QCSRDADCDGPY 124
DV+EC + C G C+N PGSY C CPP+ +P +GC R C D G
Sbjct: 2 DVNECLDPTT-CISGN-CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 125 ERCV----------RAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCL 174
+A+C C G +PCE C + + L
Sbjct: 60 GDTACSNEIGVGVSKASCCCSL--------GKAWGTPCE--------MCPAVNTSEYKIL 103
Query: 175 ----AGYT-GEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKG 217
G+ T+ D+DEC + C+N G F+C CP G
Sbjct: 104 CPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 533 QCPAGYKGNPYVQCVGGSVECQCPAGYKGNPY-VQCVDIDECWSSNTCGSNAVCINTPGS 591
CPA + C GG G++ NP V DIDEC CINT GS
Sbjct: 91 MCPAVNTSEYKILCPGGE-------GFRPNPITVILEDIDECQELPGLCQGGKCINTFGS 143
Query: 592 YDCRCKEGNAGN 603
+ CRC G N
Sbjct: 144 FQCRCPTGYYLN 155
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 501 TAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGN 541
T +D C GLC G +C+ T GS +C+CP GY N
Sbjct: 116 TVILEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLN 155
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 232
DV+ECL + C S CVN G + C CP +P +GCV + S
Sbjct: 2 DVNECLDPTTCISGN-CVNTPGSYICDCPPDFELNPTRVGCVDTRS 46
>pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase,
Target Efi- 502095) From Streptomyces Coelicolor, No Mg,
Ordered Loop
Length = 398
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 256 CASSALCVNEKGGFKCVCPKGTT---GDPYTLGCVGSGSPRTECRVDKECSPSL 306
A A+ V E+GGF V KGTT GD L V P RVD + S+
Sbjct: 172 MAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSV 225
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 355 CEGIVCAPGAACIVTPAGPTCTCADGARGNPF------PGGACYPDLCSAT----QPCPA 404
C+G+ C PG AC + P C CA G P GA Y D C + P
Sbjct: 4 CDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPD 63
Query: 405 LSVCVAGRCK 414
LSV GRC+
Sbjct: 64 LSVMYRGRCR 73
>pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|B Chain B, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|C Chain C, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|D Chain D, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
Length = 385
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 257 ASSALCVNEKGGFKCVCPKGTT---GDPYTLGCVGSGSPRTECRVDKECSPSL 306
A A+ V E+GGF V KGTT GD L V P RVD + S+
Sbjct: 152 AEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSV 204
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 351 CVSLCEGIVCAPGAACIVTPAGPTCTCADGARGNPF------PGGACYPDLCSAT----Q 400
C C+G+ C PG AC + P C CA G P GA Y D C +
Sbjct: 69 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCR 128
Query: 401 PCPALSVCVAGRCK 414
P LSV GRC+
Sbjct: 129 GHPDLSVMYRGRCR 142
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 351 CVSLCEGIVCAPGAACIVTPAGPTCTCADGARGNPF------PGGACYPDLCSAT----Q 400
C C+G+ C PG AC + P C CA G P GA Y D C +
Sbjct: 60 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCR 119
Query: 401 PCPALSVCVAGRCK 414
P LSV GRC+
Sbjct: 120 GHPDLSVMYRGRCR 133
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTG 220
DV+EC+ +PC + A C+++ G F+C+C G G
Sbjct: 1 DVNECIS-NPCQNDATCLDQIGEFQCICMPGYEG 33
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTG 279
DV+EC+ +PC + A C+++ G F+C+C G G
Sbjct: 1 DVNECIS-NPCQNDATCLDQIGEFQCICMPGYEG 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,918,199
Number of Sequences: 62578
Number of extensions: 1291924
Number of successful extensions: 3381
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 2799
Number of HSP's gapped (non-prelim): 479
length of query: 739
length of database: 14,973,337
effective HSP length: 106
effective length of query: 633
effective length of database: 8,340,069
effective search space: 5279263677
effective search space used: 5279263677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)