RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9419
(739 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 71.2 bits (175), Expect = 1e-14
Identities = 40/221 (18%), Positives = 62/221 (28%), Gaps = 62/221 (28%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
DV+EC + C+N PGSY C CPP+
Sbjct: 2 DVNECLDPTTCI--SGNCVNTPGSYICDCPPD---------------------------- 31
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADP-PQCTCLAGYTGEATLGC 185
+ C +C ++ + + C+ G C
Sbjct: 32 ------------FELNPTRVGCVDTRSG-NCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Query: 186 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
+ + G +PC + C +G +P V
Sbjct: 79 CSLGKAWG-TPCEMCPAVNTSEYKILCPGGEGFRPNP-----------------ITVILE 120
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
D+DEC + C+N G F+C CP G + T C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 65.1 bits (159), Expect = 1e-12
Identities = 32/200 (16%), Positives = 42/200 (21%), Gaps = 48/200 (24%)
Query: 31 TQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGY-CEDVDECAESRHLCGPGAVCINHPG 89
CVN G C CP F C D C G
Sbjct: 7 LDPTTCISGNCVNTPGSYI-CDCPPDFELNPTRVGCVDTRSGN-----CYLDIRPRGDNG 60
Query: 90 SYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAACVCPAPYYADVNDGHKCK 149
C C
Sbjct: 61 DTACSNEIGVGVSK--------ASCCCSLGK----------------------------- 83
Query: 150 SPCERFSCGINAQCTPAD-PPQCTCLAGYTGEA-TLGCLDVDECLGVSPCASSALCVNEK 207
C + ++ C G+ T+ D+DEC + C+N
Sbjct: 84 --AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTF 141
Query: 208 GGFKCVCPKGTTGDPYTLGC 227
G F+C CP G + T C
Sbjct: 142 GSFQCRCPTGYYLNEDTRVC 161
Score = 62.4 bits (152), Expect = 1e-11
Identities = 25/103 (24%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNPYVQC-------------------VGGSVECQCPA 557
C + G C G + C + C
Sbjct: 49 CYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGE 108
Query: 558 GYKGNPY-VQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
G++ NP V DIDEC CINT GS+ CRC G
Sbjct: 109 GFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTG 151
Score = 58.1 bits (141), Expect = 3e-10
Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 10 ECQCRPPYQIVAGECTLAT-CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGY-CED 67
C + C + C + C +GFRP ED
Sbjct: 63 ACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKI-LCPGGEGFRPNPITVILED 121
Query: 68 VDECAESRHLCGPGAVCINHPGSYTCQCPP 97
+DEC E LC G CIN GS+ C+CP
Sbjct: 122 IDECQELPGLC-QGGKCINTFGSFQCRCPT 150
Score = 56.2 bits (136), Expect = 2e-09
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 515 GLCGPGAQCLETGGSVECQCPAGYKGNPY---------------VQCVG--GSVECQCPA 557
C+ T GS C CP ++ NP ++ G G C
Sbjct: 9 PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEI 68
Query: 558 GYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
G + C + + W + C + C EG NP
Sbjct: 69 GVGVSKASCCCSLGKAWGTP-CEMCPAVNTSEYKILCPGGEGFRPNP 114
Score = 52.4 bits (126), Expect = 4e-08
Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 24/119 (20%)
Query: 170 QCTCLAGYTGEAT-LGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
C C + T +GC+D C + G C G + C
Sbjct: 25 ICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGDNGDTACSNEIGVGVSKASCCC- 79
Query: 229 GSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 287
+ + G +PC + C +G +P T+
Sbjct: 80 -----------------SLGKAWG-TPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Score = 42.3 bits (100), Expect = 1e-04
Identities = 35/142 (24%), Positives = 45/142 (31%), Gaps = 31/142 (21%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPS 305
DV+ECL + C S CVN G + C CP +P +GCV
Sbjct: 2 DVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCV------------------ 42
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSL--CEGIVCAPG 363
RS C + +C E+G C SL G C
Sbjct: 43 ----------DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMC 92
Query: 364 AACIVTPAGPTCTCADGARGNP 385
A + C +G R NP
Sbjct: 93 PAVNTSEYKILCPGGEGFRPNP 114
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSK 628
D++EC TC + C+NTPGSY C C NP V +C
Sbjct: 2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPT-RVGCVDTRSGNCYLDIRPRGDN 59
Query: 629 NAP---CPSGYVCKNSRCT---DLCANVRCGPRALCV--QGQCLCP 666
G + C C + + LCP
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCP 105
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 66.8 bits (163), Expect = 3e-13
Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 156 SCGINAQCTPADPPQCTCLAGYTGEATL------GCLDVDEC--LGVSPCASSALCVNEK 207
C ++ C + C C G++ + + C D++EC L C + C N +
Sbjct: 8 WCPQDSSCV--NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE 65
Query: 208 GGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDEC-LGVSPCASSALCVNEK 266
G + CVC G Y + C DVDEC G C SS +C N
Sbjct: 66 GSYDCVCSPG-----YEPVSGAKTFKNE----SENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 267 GGFKCVCPKGTTGDPYTLGCV 287
G + C C G
Sbjct: 117 GSYSCRCRPGWKPRHGIPNNQ 137
Score = 62.1 bits (151), Expect = 1e-11
Identities = 39/156 (25%), Positives = 54/156 (34%), Gaps = 36/156 (23%)
Query: 458 CIPPCGPNAHCEYNSESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRGSC------- 510
C C ++ C N+ + C CN G ++ +C
Sbjct: 5 CARWCPQDSSCV-NATA----------CRCNPG-----FSSFSEIITTPMETCDDINECA 48
Query: 511 DSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDI 570
CG + C T GS +C C GY+ +K C D+
Sbjct: 49 TLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS------------GAKTFKNESENTCQDV 96
Query: 571 DECWS-SNTCGSNAVCINTPGSYDCRCKEGNAGNPF 605
DEC S + C S+ VC NT GSY CRC+ G
Sbjct: 97 DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHG 132
Score = 59.4 bits (144), Expect = 9e-11
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 7 NTLECQCRPPYQIVAGECTL--ATC--------GTQGQCPGGAECVNIAGGVSYCACPKG 56
N C+C P + + T TC ++ C ++C N G C C G
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGS-YDCVCSPG 75
Query: 57 FRPKEDGY---------CEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
+ P C+DVDEC+ +H C VC N GSY+C+C P
Sbjct: 76 YEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRP 125
Score = 45.2 bits (107), Expect = 9e-06
Identities = 40/173 (23%), Positives = 53/173 (30%), Gaps = 47/173 (27%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
D CA C + C+N + C+C P S P E
Sbjct: 1 DSRGCA---RWCPQDSSCVN---ATACRCNPGFSSF--------------SEIITTPMET 40
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADP-PQCTCLAGYTGEATLG- 184
C D+N+ C + + SCG + C + C C GY +
Sbjct: 41 CD------------DINE---CATL-SKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKT 84
Query: 185 --------CLDVDEC-LGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
C DVDEC G C SS +C N G + C C G
Sbjct: 85 FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137
Score = 34.4 bits (79), Expect = 0.048
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSK 628
D C + C ++ C+N + CRC G + + TP +C+D C
Sbjct: 1 DSRGC--ARWCPQDSSCVN---ATACRCNPGFSSFSEIITTP----METCDDINECATLS 51
Query: 629 NAPCPSGYVCKN 640
C C N
Sbjct: 52 KVSCGKFSDCWN 63
Score = 30.9 bits (70), Expect = 0.74
Identities = 28/164 (17%), Positives = 39/164 (23%), Gaps = 35/164 (21%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPS 305
D C C + CVN C C G ++ +P C EC+
Sbjct: 1 DSRGCA--RWCPQDSSCVN---ATACRCNPG-----FSSFSEIITTPMETCDDINECATL 50
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCA---- 361
+ CG + C + C C GY K C
Sbjct: 51 SKVS------------CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE 98
Query: 362 ---------PGAACIVTPAGPTCTCADGARGNPFPGGACYPDLC 396
C T +C C G + +C
Sbjct: 99 CSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 27.5 bits (61), Expect = 9.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 32 QGQCPGGAECVNIAGGVSYCACPKGFRPKEDGY-CEDVDEC 71
Q QC C N G S C C G++P+ + C
Sbjct: 103 QHQCDSSTVCFNTVGSYS-CRCRPGWKPRHGIPNNQKDTVC 142
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 65.1 bits (159), Expect = 1e-12
Identities = 43/163 (26%), Positives = 58/163 (35%), Gaps = 17/163 (10%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYE 125
D+DEC S VC N PGS+ C+C S+ DP + +
Sbjct: 2 ADIDECESS---PCINGVCKNSPGSFICECSSESTLDP---------TKTICIETI---- 45
Query: 126 RCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGC 185
+ V ++N C + CT C GY+ C
Sbjct: 46 KGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTL-CQVDPICGKGYSRIKGTQC 104
Query: 186 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
D+DEC + LCVN +G FKC CP G T D C+
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 58.9 bits (143), Expect = 2e-10
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 485 CVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYV 544
C C+S + +P + + + G +++ QC +
Sbjct: 26 CECSSESTLDPT----KTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGS 81
Query: 545 QCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
C V+ C GY QC DIDEC N +C+NT GS+ C+C G
Sbjct: 82 PCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSG 136
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 3 NNQCNTLECQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKED 62
C+ + +C C + G G V C KG+ +
Sbjct: 50 WQTVIDGRCEININGATLKSQC----CSSLGAAWG---SPCTLCQVD-PICGKGYSRIKG 101
Query: 63 GYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
CED+DEC +C +C+N GS+ CQCP
Sbjct: 102 TQCEDIDECEVFPGVC-KNGLCVNTRGSFKCQCPS 135
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPA---TCV 625
DIDEC SS N VC N+PGS+ C C + +P + + +C C
Sbjct: 3 DIDECESSPCI--NGVCKNSPGSFICECSSESTLDPT-KTICIETIKGTCWQTVIDGRCE 59
Query: 626 CSKNAPCPSGYVCKNSRCTDLCANVRCGPRALCVQG 661
+ N C + C +C +G
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKG 95
Score = 36.2 bits (84), Expect = 0.012
Identities = 14/104 (13%), Positives = 22/104 (21%), Gaps = 20/104 (19%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNPY-----------VQCVGGSVECQCPAGYKGNPYV 565
C + GS C+C + +P C+
Sbjct: 11 PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQ 70
Query: 566 QCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACT 609
C + W T D C +G + C
Sbjct: 71 CCSSLGAAWG---------SPCTLCQVDPICGKGYSRIKGTQCE 105
Score = 34.2 bits (79), Expect = 0.057
Identities = 29/145 (20%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECR-VDKECSP 304
D+DEC SPC + +C N G F C C +T DP C+ +
Sbjct: 3 DIDECES-SPCIN-GVCKNSPGSFICECSSESTLDPTKTICI----ETIKGTCWQTVIDG 56
Query: 305 SLQCRGGACVDPCRSVE-CGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCE---GIVC 360
+ + GA + C GY+ +C + E
Sbjct: 57 RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGV 116
Query: 361 APGAACIVTPAGPTCTCADGARGNP 385
C+ T C C G +
Sbjct: 117 CKNGLCVNTRGSFKCQCPSGMTLDA 141
Score = 31.6 bits (72), Expect = 0.45
Identities = 35/174 (20%), Positives = 49/174 (28%), Gaps = 42/174 (24%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV-------GSGSPRTECRV 239
D+DEC SPC + +C N G F C C +T DP C+ C +
Sbjct: 3 DIDECES-SPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 240 DKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVD 299
+ G +C A +C KG +
Sbjct: 61 NINGATLKSQCCSSLGAAWG--SPCTLCQVDPICGKGYSRIK------------------ 100
Query: 300 KECSPSLQCRGGAC--VDPCRSVECG-AHALCEPQDHRASCRCELGYTEGLNGK 350
G C +D C + LC C+C G T G+
Sbjct: 101 ----------GTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGR 144
Score = 29.6 bits (67), Expect = 2.1
Identities = 27/123 (21%), Positives = 38/123 (30%), Gaps = 20/123 (16%)
Query: 434 RCVCPPFYVGDP---------EFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSSPGSDNI 484
C C DP + C V C S G++ GS
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCT 84
Query: 485 -----CVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYK 539
+C G C +D C+ G+C C+ T GS +CQCP+G
Sbjct: 85 LCQVDPICGKGYSRIKGTQC-----EDIDECEVFPGVC-KNGLCVNTRGSFKCQCPSGMT 138
Query: 540 GNP 542
+
Sbjct: 139 LDA 141
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 58.8 bits (143), Expect = 4e-11
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 510 CDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVD 569
C LCG G QC+ T G EC+C GY+ + C+D
Sbjct: 6 CRISPDLCGRG-QCVNTPGDFECKCDEGYESGFMMMK-------------------NCMD 45
Query: 570 IDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
IDEC VC NT GSY C C G
Sbjct: 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPG 75
Score = 57.7 bits (140), Expect = 9e-11
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
D+DEC CVN G F+C C +G C+D
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFM----------------MMKNCMD 45
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 287
+DEC +C N +G ++C CP G P C+
Sbjct: 46 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 54.6 bits (132), Expect = 1e-09
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 29 CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDG--YCEDVDECAESRHLCGPGAVCIN 86
C G +CVN G C C +G+ C D+DEC LC G VC N
Sbjct: 6 CRISPDLCGRGQCVNTPGDF-ECKCDEGYESGFMMMKNCMDIDECQRDPLLC-RGGVCHN 63
Query: 87 HPGSYTCQCPP 97
GSY C+CPP
Sbjct: 64 TEGSYRCECPP 74
Score = 47.3 bits (113), Expect = 5e-07
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 170 QCTCLAGYTGEATLG--CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C GY + C+D+DEC +C N +G ++C CP G P C
Sbjct: 26 ECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Query: 228 V 228
+
Sbjct: 86 I 86
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
DIDEC S C+NTPG ++C+C EG
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEG 32
Score = 38.8 bits (91), Expect = 4e-04
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
D+DEC S LCG G C+N PG + C+C
Sbjct: 2 DIDECRISPDLCGRG-QCVNTPGDFECKCDE 31
Score = 28.0 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 485 CVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNP 542
C C+ G D C LC G C T GS C+CP G++ +P
Sbjct: 27 CKCDEGYESGFMMMKNC---MDIDECQRDPLLC-RGGVCHNTEGSYRCECPPGHQLSP 80
Score = 27.3 bits (61), Expect = 4.9
Identities = 21/105 (20%), Positives = 27/105 (25%), Gaps = 23/105 (21%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPS 305
D+DEC CVN G F+C C +G C EC
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMM---------MKNCMDIDECQ-- 50
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGK 350
R +C + C C G+ N
Sbjct: 51 ------------RDPLLCRGGVCHNTEGSYRCECPPGHQLSPNIS 83
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 56.4 bits (137), Expect = 2e-10
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 549 GSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVAC 608
GS C+CP GY +CVD DEC N CG N C N G ++C C+EG P + C
Sbjct: 24 GSYRCECPFGYILAG-NECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 53.7 bits (130), Expect = 2e-09
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 185 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGC 244
+D+DEC C C+N G ++C CP G C
Sbjct: 2 AVDMDECKEPDVCKH-GQCINTDGSYRCECPFGYILAGNE-------------------C 41
Query: 245 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDP 281
+D DEC +PC + C N GGF+C C +G P
Sbjct: 42 VDTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPGP 77
Score = 49.5 bits (119), Expect = 6e-08
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 23 ECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGA 82
EC GQ C+N G C CP G+ + C D DEC+
Sbjct: 7 ECKEPDVCKHGQ------CINTDGSY-RCECPFGYILAGNE-CVDTDECSVGNPCG--NG 56
Query: 83 VCINHPGSYTCQCPPNSSGDPLLGC 107
C N G + C C P++ C
Sbjct: 57 TCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 43.3 bits (103), Expect = 9e-06
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 152 CERFSCGINAQCTPADPP-QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGF 210
C+ + QC D +C C GY C+D DEC +PC + C N GGF
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYILAGN-ECVDTDECSVGNPCGN-GTCKNVIGGF 65
Query: 211 KCVCPKGTTGDP 222
+C C +G P
Sbjct: 66 ECTCEEGFEPGP 77
Score = 42.2 bits (100), Expect = 3e-05
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 567 CVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
VD+DEC + CINT GSY C C G
Sbjct: 2 AVDMDEC-KEPDVCKHGQCINTDGSYRCECPFG 33
Score = 39.5 bits (93), Expect = 2e-04
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
D+DEC E CIN GSY C+CP
Sbjct: 2 AVDMDECKEPD--VCKHGQCINTDGSYRCECPF 32
Score = 34.9 bits (81), Expect = 0.009
Identities = 23/110 (20%), Positives = 31/110 (28%), Gaps = 32/110 (29%)
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECS 303
+D+DEC C C+N G ++C CP G
Sbjct: 2 AVDMDECKEPDVCKH-GQCINTDGSYRCECPFGYILA----------------------- 37
Query: 304 PSLQCRGGAC--VDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKC 351
G C D C + C+ C CE G+ G C
Sbjct: 38 ------GNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 26.4 bits (59), Expect = 9.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNPYVQC 546
C G EC C G++ P + C
Sbjct: 52 PCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 58.9 bits (142), Expect = 4e-09
Identities = 39/149 (26%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 151 PCERFSCGINAQCTPADPP--QCT-CLAGYTGEATLGCLDVDECLGVS----PCASSALC 203
C C AQC+ C C G+ G T C D+DEC V + C
Sbjct: 5 GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGT-HCEDLDECALVPDICFSTSKVPRC 63
Query: 204 VNEKGGFKC-VCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECL-GVSPCASSAL 261
VN + GF C CP G+ G + +K C + C C A
Sbjct: 64 VNTQPGFHCLPCPPRYRGNQP------VGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAE 117
Query: 262 CVNEK----GGFKCVCPKGTTGDPYTLGC 286
C+ +KC C G GD G
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDGLICGE 146
Score = 55.4 bits (133), Expect = 5e-08
Identities = 44/201 (21%), Positives = 64/201 (31%), Gaps = 41/201 (20%)
Query: 35 CPGGAECVNIAGGVSYC-ACPKGFRPKEDGY-CEDVDECAESRHLCGPGAV---CINHPG 89
C GA+C + G C CP GF +G CED+DECA +C + C+N
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 90 SYTC-QCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAACVCPAPYYADVNDGHKC 148
+ C CPP G+ +G + + C D
Sbjct: 69 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE---------NPCK-----DKTHN--- 111
Query: 149 KSPCERFSCGINAQCTPADP-----PQCTCLAGYTGEATLGCLDVDEC---LGVSPCASS 200
C +A+C +C C GY G+ + D D CA++
Sbjct: 112 --------CHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATN 163
Query: 201 ALCVNEKGGFKCVCPKGTTGD 221
A K + G
Sbjct: 164 ATYHCIKDNCPHLPNSGQEDF 184
Score = 52.3 bits (125), Expect = 4e-07
Identities = 45/278 (16%), Positives = 61/278 (21%), Gaps = 43/278 (15%)
Query: 23 ECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFR------------PKEDGYCEDVDE 70
EC L CVN G CP +R E CE +
Sbjct: 46 ECALVP-DICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENP 104
Query: 71 CAESRHLCGPGAVCINHP----GSYTCQCPPNSSGDPLLGCTHA---RVQCSRDADCDGP 123
C + H C A CI Y C+C +GD L+ +
Sbjct: 105 CKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNA 164
Query: 124 YERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATL 183
C++ C + D C+ + C L
Sbjct: 165 TYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDN---DGVTDEKDNCQLLFNPRQADYD 221
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVG 243
D C + A + G C GD
Sbjct: 222 KDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDV-------------------- 261
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDP 281
+ D C V + G CP D
Sbjct: 262 FNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQ 299
Score = 40.8 bits (95), Expect = 0.002
Identities = 36/240 (15%), Positives = 61/240 (25%), Gaps = 36/240 (15%)
Query: 417 CAGVVCGAGAQCDPALD---RC-VCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNS 472
C C GAQC D C CP ++G+ +C + C +
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG-THCEDLDECALVPDICFSTSKVPRCV 64
Query: 473 ESPGSSPGSDNICVCNSGTHGNPYAGCGTAGP-------QDRGSCDSGAGLCGPGAQCLE 525
+ + C GN G G + C C A+C+
Sbjct: 65 NTQPGF----HCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIY 120
Query: 526 TGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVC 585
G + +C+C GY G+ + D D N VC
Sbjct: 121 LGHFSD-----------------PMYKCECQTGYAGDGLICGEDSDLDGWPNLNL---VC 160
Query: 586 INTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSKNAPCPSGYVCKNSRCTD 645
+ + + N + +C+D + + +
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Score = 36.5 bits (84), Expect = 0.031
Identities = 32/134 (23%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 569 DIDECWSSNTCGSNAVCINTP-GSYDC-RCKEGNAGNPFVACTPV---AVVPHSCEDPAT 623
D D C SN C A C + P GS+ C C G GN C + A+VP C +
Sbjct: 2 DPDGC-LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSK 59
Query: 624 CVCSKN-------APCPSGY----VCKNSRCTDLCANVRCGPRALCVQGQCLCPSDLIGN 672
N PCP Y C P C C
Sbjct: 60 VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 673 PTDLTRGCQVKGQC 686
K +C
Sbjct: 120 YLGHFSDPMYKCEC 133
Score = 33.1 bits (75), Expect = 0.41
Identities = 37/260 (14%), Positives = 53/260 (20%), Gaps = 22/260 (8%)
Query: 360 CAPGAACIVTPAGPTC-TCADGARGNPFPGGACYPDLCSATQPCPALSVCVAGRCKARCA 418
+ C+ T G C C RGN P G + Q C + C
Sbjct: 57 TSKVPRCVNTQPGFHCLPCPPRYRGNQ-PVGVGLEAAKTEKQVCEPENPCKDKTHNCHKH 115
Query: 419 GVVCGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSS 478
G DP + +C C Y GD G N ++
Sbjct: 116 AECIYLGHFSDP-MYKCECQTGYAGDGLICGE-------DSDLDG---WPNLNLVCATNA 164
Query: 479 PGSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGY 538
C + D G+ C +
Sbjct: 165 TYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDE 224
Query: 539 KGNPYVQCVGGSVECQCPAGYKGNPYVQCVD---------IDECWSSNTCGSNAVCINTP 589
G+ C Q G VD D C +
Sbjct: 225 VGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGV 284
Query: 590 GSYDCRCKEGNAGNPFVACT 609
G + C + +
Sbjct: 285 GDHCDNCPLVHNPDQTDVDN 304
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 53.9 bits (130), Expect = 5e-09
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 526 TGGSVECQCPAGYKGNPYVQC----------------VGGSVECQCPAGYKGNPYVQCVD 569
S C C G+ P+ C+CP GY + C D
Sbjct: 20 DQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTD 79
Query: 570 IDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
IDEC + C + VC N PG+++C C
Sbjct: 80 IDECENGGFC--SGVCHNLPGTFECICGPD 107
Score = 52.0 bits (125), Expect = 2e-08
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 132 CVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDEC 191
CVC + ++ H+C+ C A C P C C GY + C D+DEC
Sbjct: 26 CVCAEGFAPIPHEPHRCQMFCN--QTACPADCDPNTQASCECPEGYILDDGFICTDIDEC 83
Query: 192 LGVSPCASSALCVNEKGGFKCVCPKGTTGDP 222
C S +C N G F+C+C +
Sbjct: 84 ENGGFC--SGVCHNLPGTFECICGPDSALAG 112
Score = 47.4 bits (113), Expect = 9e-07
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 10 ECQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVD 69
C C + + E Q A+C C CP+G+ + C D+D
Sbjct: 25 LCVCAEGFAPIPHEPHRCQMFC-NQTACPADCDPNTQA--SCECPEGYILDDGFICTDID 81
Query: 70 ECAESRHLCGPGAVCINHPGSYTCQCPP 97
EC VC N PG++ C C P
Sbjct: 82 ECENG---GFCSGVCHNLPGTFECICGP 106
Score = 43.5 bits (103), Expect = 2e-05
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 24/112 (21%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
C C G+ + C + + C CP+G Y L
Sbjct: 25 LCVCAEGFA----PIPHEPHRCQMFCNQTACPADCDPNTQASCECPEG-----YILD--- 72
Query: 230 SGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDP 281
D C D+DEC C S +C N G F+C+C +
Sbjct: 73 ----------DGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSALAG 112
Score = 35.8 bits (83), Expect = 0.010
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 5/75 (6%)
Query: 34 QCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTC 93
+ +C + C C +GF P C + +C
Sbjct: 9 RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCN-----QTACPADCDPNTQASC 63
Query: 94 QCPPNSSGDPLLGCT 108
+CP D CT
Sbjct: 64 ECPEGYILDDGFICT 78
Score = 32.7 bits (75), Expect = 0.12
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 549 GSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVAC 608
S C C G+ P+ C N A C + C C EG + C
Sbjct: 22 TSYLCVCAEGFAPIPHEPHRCQMFC---NQTACPADC-DPNTQASCECPEGYILDDGFIC 77
Query: 609 T 609
T
Sbjct: 78 T 78
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 52.3 bits (126), Expect = 1e-08
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 520 GAQCLETGGSVECQCPAGYKGNPYV--------------QCV--GGSVECQCPAGYKGNP 563
+ + C EC CP G++
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA 62
Query: 564 YVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
+C DIDEC +TC + +C+N G Y C+C+EG
Sbjct: 63 QRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEG 96
Score = 48.9 bits (117), Expect = 2e-07
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 41 CVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
C ++ G C CP GF+ CED+DEC + C +C+N G Y CQC
Sbjct: 43 CNDLKIGY-ECLCPDGFQLVAQRRCEDIDECQDP-DTC--SQLCVNLEGGYKCQCEE 95
Score = 47.7 bits (114), Expect = 4e-07
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 229
+ G + +ECL + S +C + K G++C+CP G + L
Sbjct: 14 DIPTTENLYFQ---GAMGTNECL-DNNGGCSYVCNDLKIGYECLCPDG-----FQLV--- 61
Query: 230 SGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 286
+ C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 62 ----------AQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 40.4 bits (95), Expect = 2e-04
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 169 PQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC 227
+C C G+ A C D+DEC C S LCVN +GG+KC C +G DP+T C
Sbjct: 50 YECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.8 bits (70), Expect = 0.42
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 22/74 (29%)
Query: 203 CVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASSALC 262
+ + + G + +ECL + S +C
Sbjct: 6 HHHPMSDYDIPTTENLYFQ---------------------GAMGTNECL-DNNGGCSYVC 43
Query: 263 VNEKGGFKCVCPKG 276
+ K G++C+CP G
Sbjct: 44 NDLKIGYECLCPDG 57
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 53.0 bits (128), Expect = 1e-08
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 26/112 (23%)
Query: 170 QCTCLAGYTGEATLGC-LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
+C CL GYTG C +DV+EC+ +PC + A C+++ G F+C+C G G
Sbjct: 29 ECQCLQGYTGPR---CEIDVNECVS-NPCQNDATCLDQIGEFQCICMPGYEG-------- 76
Query: 229 GSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
C V+ DEC SPC + C+++ F+C CP G TG
Sbjct: 77 ------VHCEVN------TDECAS-SPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 51.8 bits (125), Expect = 3e-08
Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 45/158 (28%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPY 124
+DVDEC+ + C CIN GS+ CQC +G +C D +
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP----------RCEIDVN----- 46
Query: 125 ERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPP-QCTCLAGYTGEATL 183
C C +A C QC C+ GY G
Sbjct: 47 --------------------------ECVSNPCQNDATCLDQIGEFQCICMPGYEG--VH 78
Query: 184 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
++ DEC SPC + C+++ F+C CP G TG
Sbjct: 79 CEVNTDECAS-SPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 44.5 bits (106), Expect = 1e-05
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 510 CDSGAGLCGPGAQCLETGGSVECQCPAGYKG----NPYVQCVG-------------GSVE 552
C GA C +C+ T GS ECQC GY G +CV G +
Sbjct: 8 CSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQ 67
Query: 553 CQCPAGYKGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
C C GY+G V C V+ DEC +S+ C N C++ + C C G
Sbjct: 68 CICMPGYEG---VHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTG 111
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 35 CPGGAECVNIAGGVSYCACPKGFRPKEDGYCE-DVDECAESRHLCGPGAVCINHPGSYTC 93
C +C+N G C C +G+ CE DV+EC + C A C++ G + C
Sbjct: 15 CEHAGKCINTLGSFE-CQCLQGY---TGPRCEIDVNECV--SNPCQNDATCLDQIGEFQC 68
Query: 94 QCPP 97
C P
Sbjct: 69 ICMP 72
Score = 33.7 bits (78), Expect = 0.062
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 567 CVDIDEC-WSSNTCGSNAVCINTPGSYDCRCKEG 599
D+DEC +N C CINT GS++C+C +G
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQG 35
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 48.4 bits (116), Expect = 2e-07
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 29 CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGY-CEDVDECAESRHLCGPGAVCINH 87
C + G A C NI G C CP+G+R CED+DEC+E ++C +C+N+
Sbjct: 6 CSLKPSICGTAVCKNIPGDF-ECECPEGYRYNLKSKSCEDIDECSE--NMCA--QLCVNY 60
Query: 88 PGSYTCQC 95
PG YTC C
Sbjct: 61 PGGYTCYC 68
Score = 46.1 bits (110), Expect = 1e-06
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
DVDEC +A+C N G F+C CP+G Y + C D
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEG-----YRYN------------LKSKSCED 44
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVC 273
+DEC + C + LCVN GG+ C C
Sbjct: 45 IDECS-ENMC--AQLCVNYPGGYTCYC 68
Score = 43.8 bits (104), Expect = 7e-06
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 24/92 (26%)
Query: 505 QDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPY 564
+D C +CG C G EC+CP GY+ N +
Sbjct: 1 KDVDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSK------------------- 40
Query: 565 VQCVDIDECWSSNTCGSNAVCINTPGSYDCRC 596
C DIDEC S N C +C+N PG Y C C
Sbjct: 41 -SCEDIDEC-SENMC--AQLCVNYPGGYTCYC 68
Score = 42.3 bits (100), Expect = 3e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
D+DEC + AVC N PG ++C C EG
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEG 32
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
+DVDEC+ +CG VC N PG + C+CP
Sbjct: 1 KDVDECSLKPSICGTA-VCKNIPGDFECECPE 31
Score = 33.4 bits (77), Expect = 0.033
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 170 QCTCLAGYT-GEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVC 214
+C C GY + C D+DEC + C + LCVN GG+ C C
Sbjct: 26 ECECPEGYRYNLKSKSCEDIDECS-ENMC--AQLCVNYPGGYTCYC 68
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 51.4 bits (122), Expect = 7e-07
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 151 PCERFSCGINAQCTP-ADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGG 209
C + G + C +C C G+ A C D+DEC C S LCVN +GG
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGG 59
Query: 210 FKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVD 248
+KC C +G DP+T C GS ++ +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 98
Score = 50.2 bits (119), Expect = 1e-06
Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 10/126 (7%)
Query: 23 ECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGA 82
EC G C ++ G C CP GF+ CED+DEC + C
Sbjct: 2 ECLDNNGGCS------HVCNDLKIGY-ECLCPDGFQLVAQRRCEDIDECQDP-DTCSQ-- 51
Query: 83 VCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAACVCPAPYYADV 142
+C+N G Y CQC DP A + + R + ++
Sbjct: 52 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 143 NDGHKC 148
+
Sbjct: 112 RNVVAL 117
Score = 49.1 bits (116), Expect = 3e-06
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 21/149 (14%)
Query: 189 DECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVD 248
+ECL + S +C + K G++C+CP G C D+D
Sbjct: 1 NECL-DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------------CEDID 41
Query: 249 ECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQC 308
EC C S LCVN +GG+KC C +G DP+T C GS ++ +
Sbjct: 42 ECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 99
Query: 309 RGGACVDPCRSVECGAHALCEPQDHRASC 337
++ E +R
Sbjct: 100 DRSEYTSLIPNLRNVVALDTEVASNRIYW 128
Score = 48.7 bits (115), Expect = 5e-06
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 545 QCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
+ EC CP G++ +C DIDEC +TC +C+N G Y C+C+EG +P
Sbjct: 15 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 72
Query: 605 FVACTPVAVVPHSCEDPATCVCSKNAPCP 633
AV + +
Sbjct: 73 H-TKACKAVGSIAYLFFTNRHEVRKMTLD 100
Score = 41.8 bits (97), Expect = 6e-04
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 571 DECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATC--VCSK 628
+EC N G + VC + Y+C C +G C C+DP TC +C
Sbjct: 1 NEC-LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED----IDECQDPDTCSQLCV- 54
Query: 629 NAPCPSGYVCKNSRCTDLCANVR-CGPRALCVQGQCLCPSDLIGNPTDLTRGCQVKGQCA 687
GY C+ L + + C ++ D + +
Sbjct: 55 --NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Query: 688 NDLEC 692
N +
Sbjct: 113 NVVAL 117
Score = 35.2 bits (80), Expect = 0.083
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 315 DPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIV-CAPGAACIVTPAGP 373
+ C G +C C C G+ +C + E C+ G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 374 TCTCADGARGNPFPGGACYPDLCSATQPCP 403
C C +G + +P +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTN 90
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 48.2 bits (114), Expect = 5e-06
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 23 ECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGY-CEDVDECAESRHLCGPG 81
C + G +C I G V C C G+R EDG C+DV+ECAE + C
Sbjct: 5 NCNVNNGGCA------QKCQMIRGAV-QCTCHTGYRLTEDGRTCQDVNECAEEGY-CSQ- 55
Query: 82 AVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAACVCPAPYYAD 141
C N G++ C C P A + R V +
Sbjct: 56 -GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114
Query: 142 VNDGHKCKSPCER 154
+ + R
Sbjct: 115 LENAIALDFHHRR 127
Score = 48.2 bits (114), Expect = 5e-06
Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 20/148 (13%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
+ C V+ + C +G +C C G Y L D C D
Sbjct: 2 GEENC-NVNNGGCAQKCQMIRGAVQCTCHTG-----YRLTE------------DGRTCQD 43
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSL 306
V+EC C S C N +G F+C C G P C G ++ +
Sbjct: 44 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 101
Query: 307 QCRGGACVDPCRSVECGAHALCEPQDHR 334
++E +
Sbjct: 102 LPHRSEYTLLLNNLENAIALDFHHRREL 129
Score = 41.3 bits (96), Expect = 0.001
Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 25/140 (17%)
Query: 506 DRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYV 565
+C+ G C +C G+V+C C GY+
Sbjct: 2 GEENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTED--------------------GR 39
Query: 566 QCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCV 625
C D++EC C C N+ G++ C C+ G P + A+ P A +
Sbjct: 40 TCQDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDR-RSCKALGPEPVLLFANRI 96
Query: 626 CSKNAPCPSGYVCKNSRCTD 645
+ +
Sbjct: 97 DIRQVLPHRSEYTLLLNNLE 116
Score = 37.4 bits (86), Expect = 0.013
Identities = 17/98 (17%), Positives = 22/98 (22%), Gaps = 23/98 (23%)
Query: 569 DIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSK 628
+ C + N G C G+ C C G C
Sbjct: 2 GEENC-NVNNGGCAQKCQMIRGAVQCTCHTG-----------------YRLTEDGRTCQD 43
Query: 629 NAPCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCLCP 666
C C+ C N + C G L P
Sbjct: 44 VNECAE-----EGYCSQGCTNSEGAFQCWCEAGYELRP 76
Score = 37.1 bits (85), Expect = 0.017
Identities = 11/107 (10%), Positives = 21/107 (19%), Gaps = 3/107 (2%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
+ C + C C G+ C C +C+ + C
Sbjct: 2 GEENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCT- 58
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTC 173
A C ++ + + A
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Score = 36.7 bits (84), Expect = 0.025
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 314 VDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLC----EGIVCAPGAACIVT 369
+ C G C+ C C GY +G+ E C+ G C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNS 60
Query: 370 PAGPTCTCADGARGNP 385
C C G P
Sbjct: 61 EGAFQCWCEAGYELRP 76
Score = 29.7 bits (66), Expect = 3.7
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 6/117 (5%)
Query: 10 ECQCRPPYQIVAGECTLAT---CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCE 66
+C C Y++ T C +G C G C N G C C G+ + D
Sbjct: 25 QCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSEGAF-QCWCEAGYELRPDRRSC 81
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGP 123
+ P N+ + + H R + +D
Sbjct: 82 KALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD 138
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 44.6 bits (106), Expect = 1e-05
Identities = 20/110 (18%), Positives = 29/110 (26%), Gaps = 23/110 (20%)
Query: 171 CTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGS 230
D D+C SPC + C + G + C C +G G C
Sbjct: 27 EDSDKTNEFWNK--YKDGDQCET-SPCQNQGKCKDGLGEYTCTCLEGFEGK----NC--- 76
Query: 231 GSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
L + + C E+ C C +G T
Sbjct: 77 -------------ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 39.2 bits (92), Expect = 8e-04
Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 21/101 (20%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNP----YVQCV-------------GGSVECQCPAGY 559
C E V + QC G C C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 560 KGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
+G C + + S + + C S C C G
Sbjct: 72 EG---KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Score = 36.5 bits (85), Expect = 0.007
Identities = 29/171 (16%), Positives = 36/171 (21%), Gaps = 48/171 (28%)
Query: 196 PCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSP 255
C E K D D+C SP
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWN--------------------KYKDGDQCET-SP 49
Query: 256 CASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQCRGGACVD 315
C + C + G + C C +G G E K CS
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG------------KNCELFTRKLCSLD---------- 87
Query: 316 PCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAAC 366
C + + C C GYT NGK C
Sbjct: 88 -----NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 36.5 bits (85), Expect = 0.008
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 170 QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
CTCL G+ G+ L + + C E+ C C +G T
Sbjct: 64 TCTCLEGFEGKNC--ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 34.6 bits (80), Expect = 0.034
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 35 CPGGAECVNIAGGVSYCACPKGFRPKEDGYCE-DVDECAESRHLCGPGAVCINHPGSYTC 93
C +C + G + C C +GF E CE + + C S C
Sbjct: 50 CQNQGKCKDGLGEYT-CTCLEGF---EGKNCELFTRKLCSLDN-GDCDQFCHEEQNSVVC 104
Query: 94 QCPP 97
C
Sbjct: 105 SCAR 108
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 42.0 bits (99), Expect = 6e-05
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 549 GSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
GS C C +G++G + V C N G C+ G C C G
Sbjct: 33 GSFSCDCRSGWEGRFCQREVSFLNCSLDN-GGCTHYCLEEVGWRRCSCAPG 82
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 29 CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHP 88
C G C++ G S C C G+ + C+ C C+
Sbjct: 16 HPCASLCCGHGTCIDGIGSFS-CDCRSGWEGRFCQREVSFLNCSLDNGGC--THYCLEEV 72
Query: 89 GSYTCQCPP 97
G C C P
Sbjct: 73 GWRRCSCAP 81
Score = 35.1 bits (81), Expect = 0.017
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 26/104 (25%)
Query: 185 CLDVDECL-------GVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTEC 237
+D D+CL S C C++ G F C C G G
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR------------ 50
Query: 238 RVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDP 281
+ C + + C+ E G +C C G
Sbjct: 51 ------EVSFLNCS-LDNGGCTHYCLEEVGWRRCSCAPGYKLGD 87
Score = 32.8 bits (75), Expect = 0.093
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPY 124
C + LC CI+ GS++C C G C + D G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR---FCQREVSFLNCSLDNGGCT 65
Query: 125 ERCV----RAACVCPAPYYADVNDGHKCKSPCERFSCGINAQC 163
C+ C C AP Y +D +C P +F CG +
Sbjct: 66 HYCLEEVGWRRCSC-APGYKLGDDLLQC-HPAVKFPCGRPWKR 106
Score = 30.1 bits (68), Expect = 0.95
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 566 QCVDIDECWS-------SNTCGSNAVCINTPGSYDCRCKEG 599
+ VD D+C ++ C + CI+ GS+ C C+ G
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSG 42
Score = 28.1 bits (63), Expect = 3.6
Identities = 23/131 (17%), Positives = 31/131 (23%), Gaps = 33/131 (25%)
Query: 244 CLDVDECL-------GVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTEC 296
+D D+CL S C C++ G F C C G G
Sbjct: 3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR---------------- 46
Query: 297 RVDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCE 356
C+ C G C + C C GY G +
Sbjct: 47 ----------FCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96
Query: 357 GIVCAPGAACI 367
C +
Sbjct: 97 KFPCGRPWKRM 107
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 40.9 bits (96), Expect = 3e-04
Identities = 31/164 (18%), Positives = 49/164 (29%), Gaps = 46/164 (28%)
Query: 69 DECAESRHLCGPGAVCINH--PGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
D C + C G +C+ GS++C+CP + +C E
Sbjct: 1 DICDPNP--CENGGICLPGLADGSFSCECPDGFTDP----------------NCSSVVEV 42
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPP--------QCTCLAGYT 178
A PC C C ++ C C G+
Sbjct: 43 ASDEEEPTSA-------------GPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN 89
Query: 179 GEATLGC-LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
G C +++EC PC + +C + + C CP G
Sbjct: 90 GIH---CQHNINECEV-EPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 39.7 bits (93), Expect = 7e-04
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 39/128 (30%)
Query: 170 QCTCLAGYTG----------EATLGCLDVDECLGVSPCASSALCVNEKG-------GFKC 212
C C G+T C +PC + C + G+ C
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTP-NPCHNGGTCEISEAYRGDTFIGYVC 82
Query: 213 VCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCV 272
CP+G G C+ + ++EC PC + +C + + C
Sbjct: 83 KCPRGFNG--------------IHCQHN------INECEV-EPCKNGGICTDLVANYSCE 121
Query: 273 CPKGTTGD 280
CP G
Sbjct: 122 CPGEFMGR 129
Score = 33.9 bits (78), Expect = 0.054
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 552 ECQCPAGYKGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
C+CP G+ G + C +I+EC C + +C + +Y C C
Sbjct: 81 VCKCPRGFNG---IHCQHNINEC-EVEPCKNGGICTDLVANYSCECPGE 125
Score = 29.3 bits (66), Expect = 2.2
Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 26/142 (18%)
Query: 248 DECLGVSPCASSALCVN--EKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPS 305
D C +PC + +C+ G F C CP G T C E +
Sbjct: 1 DICDP-NPCENGGICLPGLADGSFSCECPDGFTDP--------------NCSSVVEVASD 45
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRA-------SCRCELGYTEGLNGKCVSLCEGI 358
+ PC C CE + C+C G+ ++ CE
Sbjct: 46 EEEPTS--AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVE 103
Query: 359 VCAPGAACIVTPAGPTCTCADG 380
C G C A +C C
Sbjct: 104 PCKNGGICTDLVANYSCECPGE 125
Score = 28.5 bits (64), Expect = 3.7
Identities = 31/170 (18%), Positives = 46/170 (27%), Gaps = 57/170 (33%)
Query: 189 DECLGVSPCASSALCVN--EKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
D C +PC + +C+ G F C CP G T C D
Sbjct: 1 DICDP-NPCENGGICLPGLADGSFSCECPDGFTDP--------------NCSSVVEVASD 45
Query: 247 VDECLGVSPCASS------------ALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRT 294
+E PC + A + G+ C CP+G G
Sbjct: 46 EEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG--------------I 91
Query: 295 ECRVDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYT 344
C+ + ++ C C +C SC C +
Sbjct: 92 HCQHN--------------INECEVEPCKNGGICTDLVANYSCECPGEFM 127
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 42.8 bits (100), Expect = 4e-04
Identities = 41/307 (13%), Positives = 71/307 (23%), Gaps = 30/307 (9%)
Query: 374 TCTCADGARGNPFPGGACYPDLCSATQPC-PALSVCVAGRCKARCAGVVCGAGAQCDPAL 432
C++G P G C + ++ + ++ + L
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 433 DRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSSPGSDNICVCNSGTH 492
+C C C + I C + + C +
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 480
Query: 493 GNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCP-------AGYKGNPYVQ 545
+G G C G LC + C+C G +
Sbjct: 481 SIICSG--------LGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGR 532
Query: 546 CVGGSVECQCPAGYKGNP--YVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGN 603
+ +C+C G++G+ + + C C C C G
Sbjct: 533 GLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR----CNVCECHSGYQLP 588
Query: 604 PFVACTPVAVVPHSCEDPATCVCSKNAPCPSGYVCKN--SRCTDLCANVRCGPRALC-VQ 660
C P C +C G KN + C L + C +
Sbjct: 589 ---LCQECPGCPSPCGKYISCAECLK--FEKGPFGKNCSAACPGLQLSNNPVKGRTCKER 643
Query: 661 GQCLCPS 667
C
Sbjct: 644 DSEGCWV 650
Score = 35.1 bits (80), Expect = 0.098
Identities = 40/321 (12%), Positives = 61/321 (19%), Gaps = 52/321 (16%)
Query: 49 SYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCT 108
C G + + + D +
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 109 HARVQCSRDADCDGPYE-----RCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQC 163
+ +C C C Y + +
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 479
Query: 164 TPADPP--------QCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGF----K 211
QC C + + + +C G K
Sbjct: 480 NSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK 539
Query: 212 CVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKC 271
C C G G +C GCL+ C+ C C
Sbjct: 540 CRCHPGFEGS------------ACQCERTTEGCLNPRRV----ECSGRGRCRC----NVC 579
Query: 272 VCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQCRGG--------ACVDPCRSVECG 323
C G C + C C+ L+ G AC S
Sbjct: 580 ECHSGYQLP----LCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPV 635
Query: 324 AHALCEPQDHRASCRCELGYT 344
C+ +D S C + YT
Sbjct: 636 KGRTCKERD---SEGCWVAYT 653
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 41.3 bits (97), Expect = 4e-04
Identities = 31/185 (16%), Positives = 47/185 (25%), Gaps = 19/185 (10%)
Query: 41 CVNIAGGVSYCACPKGFRPKEDGYCE-DVDECAESRHLCGPGAVCINHPGSYTCQCPPNS 99
C + K E D D+C S C C + G YTC C
Sbjct: 17 CSYEEAREVFEDSDKTN---EFWNKYKDGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF 71
Query: 100 SGDPLLGCTHARVQCSRDADCDGPYERCV----RAACVCPAPYYADVNDGHKCKSPCERF 155
G C + + + C C C Y ++G C P +
Sbjct: 72 EGK---NCELFTRKLCSLDNG-DCDQFCHEEQNSVVCSCARG-YTLADNGKAC-IPTGPY 125
Query: 156 SCGINAQCTP-ADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVC 214
CG Q T +G + ++ D P + ++
Sbjct: 126 PCGKQTLERRKRSVAQATSSSGEAPD-SITWKPYDAADL-DPTENPFDLLDFNQTQPERG 183
Query: 215 PKGTT 219
T
Sbjct: 184 DNNLT 188
Score = 40.1 bits (94), Expect = 8e-04
Identities = 20/115 (17%), Positives = 29/115 (25%), Gaps = 25/115 (21%)
Query: 170 QCTCLAGYTGEATLGC-LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCV 228
CTCL G+ G+ C L + + C E+ C C +G T
Sbjct: 64 TCTCLEGFEGK---NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN----- 115
Query: 229 GSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYT 283
PC L ++ + G D T
Sbjct: 116 ---------------GKACIPTGP-YPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Score = 39.7 bits (93), Expect = 0.001
Identities = 31/190 (16%), Positives = 41/190 (21%), Gaps = 48/190 (25%)
Query: 196 PCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSP 255
C E K D D+C SP
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWN--------------------KYKDGDQCET-SP 49
Query: 256 CASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQCRGGACVD 315
C + C + G + C C +G G E K CS
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGK------------NCELFTRKLCSLD---------- 87
Query: 316 PCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIVTPAGPTC 375
C + + C C GYT NGK C +
Sbjct: 88 -----NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQA 142
Query: 376 TCADGARGNP 385
T + G +
Sbjct: 143 TSSSGEAPDS 152
Score = 34.7 bits (80), Expect = 0.064
Identities = 22/151 (14%), Positives = 34/151 (22%), Gaps = 27/151 (17%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKGNPYVQCV-----------------GGSVECQCPAGY 559
C E V + + G C C G+
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 560 KGNPYVQC-VDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP-FVACTPVAVVPHS 617
+G C + + S + + C S C C G AC P P+
Sbjct: 72 EGK---NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP--TGPYP 126
Query: 618 CEDPATCVCSKNAP---CPSGYVCKNSRCTD 645
C ++ SG +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSITWKP 157
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 40.8 bits (94), Expect = 6e-04
Identities = 34/224 (15%), Positives = 54/224 (24%), Gaps = 47/224 (20%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
+ + A + + + C C C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXN--------------- 45
Query: 127 CVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCL 186
C A G ++P C C+ GYT L
Sbjct: 46 ----ECXXETLGXACGEFGQCIENPDPAQVNMY----------XCGCIEGYTLXEDTCVL 91
Query: 187 DVDECLGVSPCAS-SALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
DV + ++E C C G +P D+ C
Sbjct: 92 DVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE----------------DEXXCT 135
Query: 246 DVDEC-LGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVG 288
E + + +C N +G + C C +G T D C+G
Sbjct: 136 XTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179
Score = 37.3 bits (85), Expect = 0.007
Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 19/178 (10%)
Query: 31 TQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRH--LCGPGAVCINHP 88
T + V ++ C C +G + CE+ +EC CG CI +P
Sbjct: 8 TVDTICXNGQLVQMSNHF-XCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP 66
Query: 89 -----GSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAA----CVCPAPYY 139
Y C C + C Q + + C C
Sbjct: 67 DPAQVNMYXCGCIEGYTLXE-DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 140 ADVNDGHKC----KSPCERFSCGINAQCTPADPP-QCTCLAGYTGEATL-GCLDVDEC 191
+ D C ++ C+ N C + C C+ G+T + CL
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 33.9 bits (76), Expect = 0.10
Identities = 27/146 (18%), Positives = 39/146 (26%), Gaps = 21/146 (14%)
Query: 250 CLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQCR 309
+ V + V F C+C +G + C +C
Sbjct: 6 AVTVDTICXNGQLVQMSNHFXCMCNEGLVHLS-----------------ENTCEEXNECX 48
Query: 310 GGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIV- 368
C Q + C C GYT + + +C+ C CIV
Sbjct: 49 XETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE 108
Query: 369 ---TPAGPTCTCADGARGNPFPGGAC 391
C+CA G NP C
Sbjct: 109 YLSEIQSAGCSCAIGXVPNPEDEXXC 134
Score = 33.9 bits (76), Expect = 0.10
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 22/151 (14%)
Query: 575 SSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTP-----VAVVPHSCEDPATCVCSKN 629
+ +T N + + C C EG C + +C + C+ + +
Sbjct: 8 TVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPD 67
Query: 630 APCPSGYVCK---------NSRCTDLCANVRCGPRALCVQG--------QCLCPSDLIGN 672
+ Y C ++ D+C CG C+ C C + N
Sbjct: 68 PAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPN 127
Query: 673 PTDLTRGCQVKGQCANDLECKPNEICFQEKG 703
P D NE+C +G
Sbjct: 128 PEDEXXCTXTGETACQLXCNTDNEVCXNVEG 158
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/141 (19%), Positives = 32/141 (22%), Gaps = 26/141 (18%)
Query: 485 CVCNSGTHGNPYAGCGTAGP--QDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNP 542
C+CN G C + G C C GY
Sbjct: 27 CMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE 86
Query: 543 YVQCVG---------------------GSVECQCPAGYKGNPY--VQCVDIDECWSSN-T 578
+ S C C G NP C E
Sbjct: 87 DTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXC 146
Query: 579 CGSNAVCINTPGSYDCRCKEG 599
N VC N G Y C+C EG
Sbjct: 147 NTDNEVCXNVEGVYXCQCMEG 167
Score = 28.8 bits (63), Expect = 4.3
Identities = 24/182 (13%), Positives = 37/182 (20%), Gaps = 22/182 (12%)
Query: 360 CAPGAACIVTPAGPTCTCADGARGNPFPGGACYPDLCSATQPCPALSVCVAGRCKARCAG 419
+ C C +G + C C ++ A +C
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSE-------NTCEEXNECXXETLGXACGEFGQCIE 64
Query: 420 VVCGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSSP 479
A + C C Y + + C +S
Sbjct: 65 NPDPA----QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQS----- 115
Query: 480 GSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYK 539
C C G NP + C G CQC G+
Sbjct: 116 ---AGCSCAIGXVPNPEDEXXCTXTGE---TACQLXCNTDNEVCXNVEGVYXCQCMEGFT 169
Query: 540 GN 541
+
Sbjct: 170 FD 171
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 41.3 bits (96), Expect = 6e-04
Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 24/127 (18%)
Query: 503 GPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGN-------PYVQCVGGSVECQC 555
P + +C + C A+C + C+C A Y GN Q V G V+ +
Sbjct: 1 APLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRI 60
Query: 556 PAGYKGNP----------YVQCVDIDECWSSNTCGSNA-------VCINTPGSYDCRCKE 598
G P YV + +T I + ++
Sbjct: 61 FVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQ 120
Query: 599 GNAGNPF 605
N F
Sbjct: 121 DGFKNGF 127
Score = 40.5 bits (94), Expect = 0.001
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 66 EDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGD 102
CA +RH C A C ++ + C+C N +G+
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN 39
Score = 35.5 bits (81), Expect = 0.050
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 187 DVDEC-LGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
C C+ A C + GF C C TG+
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN 39
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 38.5 bits (90), Expect = 0.002
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 29/123 (23%)
Query: 244 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECS 303
+D D+C +PC + LC ++ ++C C G G C +D C+
Sbjct: 45 YVDGDQCEP-NPCLNGGLCKDDINSYECWCQVGFEG--------------KNCELDATCN 89
Query: 304 PSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPG 363
C D + C C GY + K C
Sbjct: 90 IKNGRCKQFC--------------KTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRV 135
Query: 364 AAC 366
+
Sbjct: 136 SVS 138
Score = 36.6 bits (85), Expect = 0.007
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 22/96 (22%)
Query: 185 CLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGC 244
+D D+C +PC + LC ++ ++C C G G C +
Sbjct: 45 YVDGDQCEP-NPCLNGGLCKDDINSYECWCQVGFEG--------------KNCEL----- 84
Query: 245 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
D + + C C G
Sbjct: 85 -DATCNIK-NGRCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 33.1 bits (76), Expect = 0.13
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 523 CLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSN 582
C+E S E V + + Q VD D+C N C +
Sbjct: 18 CIEEKCSFEEAR---------------EVFENTEKTNEF--WKQYVDGDQC-EPNPCLNG 59
Query: 583 AVCINTPGSYDCRCKEGNAG 602
+C + SY+C C+ G G
Sbjct: 60 GLCKDDINSYECWCQVGFEG 79
Score = 32.3 bits (74), Expect = 0.20
Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 22/89 (24%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKG------------NPY-----VQCVGGSVECQCPAGY 559
C G C + S EC C G++G N V C C GY
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115
Query: 560 KGNPYVQC-VDIDECWSSNTCGSNAVCIN 587
+ CG +V +
Sbjct: 116 RLA---PDQKSCKPA-VPFPCGRVSVSHS 140
Score = 31.2 bits (71), Expect = 0.52
Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPY 124
D D+C + C G +C + SY C C G C ++ C
Sbjct: 45 YVDGDQCEPN--PCLNGGLCKDDINSYECWCQVGFEGKN---CELDATCNIKNGRCKQ-- 97
Query: 125 ERCV----RAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCT 164
+ C C Y D C P F CG +
Sbjct: 98 FCKTGADSKVLCSCT-TGYRLAPDQKSC-KPAVPFPCGRVSVSH 139
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 40.3 bits (94), Expect = 0.002
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 558 GYKGNPYVQCVDIDEC--WSSNTCGSNAVCINT-PGSYDCRCKEGNAGNPFVACT 609
G +P C S + C +A C+ GS C C G AGN +
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGR 60
Score = 34.5 bits (79), Expect = 0.12
Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 176 GYTGEATLGCLDVDEC--LGVSPCASSALCVNEKGG-FKCVCPKGTTGDPYTLG 226
G C S C A CV E+ G CVC G G+ G
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
Score = 29.1 bits (65), Expect = 6.9
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 242 VGCLDVDEC--LGVSPCASSALCVNEKGG-FKCVCPKGTTGDPYTLG 285
C S C A CV E+ G CVC G G+ G
Sbjct: 13 WWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 38.3 bits (89), Expect = 0.007
Identities = 38/220 (17%), Positives = 58/220 (26%), Gaps = 54/220 (24%)
Query: 63 GYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHA--RVQCSRDADC 120
+ + V + + C A C C
Sbjct: 105 VGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TCQQAECPGGCRNGGFC 161
Query: 121 DGPYERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGE 180
+ C CP ++ G C+ C C P C C G+ G
Sbjct: 162 NERRI------CECPDGFH-----GPHCEKALCTPRCMNGGLCV--TPGFCICPPGFYGV 208
Query: 181 ATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVD 240
+ D+ + C + C KC+CP G G +C
Sbjct: 209 ------NCDKANCSTTCFNGGTCFY---PGKCICPPGLEG--------------EQC--- 242
Query: 241 KVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
++ +C PC + C+ KC C KG GD
Sbjct: 243 -----EISKCP--QPCRNGGKCIG---KSKCKCSKGYQGD 272
Score = 35.2 bits (81), Expect = 0.061
Identities = 42/195 (21%), Positives = 53/195 (27%), Gaps = 37/195 (18%)
Query: 29 CGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHP 88
+N G K C+ AE C G C
Sbjct: 113 QDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKT---CQQ----AECPGGCRNGGFCNER- 164
Query: 89 GSYTCQCPPNSSGDPLLGCTHARV--QCSRDADCDGPYERCVRAACVCPAPYYADVNDGH 146
C+CP G C A +C C P C+CP +Y G
Sbjct: 165 --RICECPDGFHGP---HCEKALCTPRCMNGGLCVTPGF------CICPPGFY-----GV 208
Query: 147 KCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNE 206
C +C C P +C C G GE + PC + C+
Sbjct: 209 NCDKANCSTTCFNGGTCF--YPGKCICPPGLEGE------QCEISKCPQPCRNGGKCIG- 259
Query: 207 KGGFKCVCPKGTTGD 221
KC C KG GD
Sbjct: 260 --KSKCKCSKGYQGD 272
Score = 34.8 bits (80), Expect = 0.075
Identities = 41/214 (19%), Positives = 60/214 (28%), Gaps = 36/214 (16%)
Query: 497 AGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGN------PYVQCVGGS 550
A G G D A G ++ C G
Sbjct: 100 ASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGG 159
Query: 551 V-----ECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPF 605
C+CP G+ G ++ + C + +C+ C C G G
Sbjct: 160 FCNERRICECPDGFHGP------HCEKALCTPRCMNGGLCVT---PGFCICPPGFYGV-- 208
Query: 606 VACTPVAVVPHSCEDPATCVCSKNAPCPSGYV---CKNSRCTDLCANVRCGPRALCV-QG 661
C A +C + TC CP G C+ S+C C N C+ +
Sbjct: 209 -NCD-KANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRN-----GGKCIGKS 261
Query: 662 QCLCPSDLIGNPTDL---TRGCQVKGQCANDLEC 692
+C C G+ GC G C +C
Sbjct: 262 KCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKC 295
Score = 33.7 bits (77), Expect = 0.22
Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 26/179 (14%)
Query: 526 TGGSVECQCPAGYKGNPYVQC-------VGGSVECQCPAGYKGNPYVQCVDIDECWSSNT 578
+ V C G + G ++ +
Sbjct: 101 SVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFK------TCQQAECPGG 154
Query: 579 CGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSKNAPCPSGYVC 638
C + C C C +G G C A+ C + CV CP G+
Sbjct: 155 CRNGGFCNE---RRICECPDGFHGP---HCE-KALCTPRCMNGGLCVTPGFCICPPGF-- 205
Query: 639 KNSRCTDLCANVRCGPRALCVQ-GQCLCPSDLIGN---PTDLTRGCQVKGQCANDLECK 693
C + C C G+C+CP L G + + C+ G+C +CK
Sbjct: 206 YGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCK 264
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 38.7 bits (89), Expect = 0.008
Identities = 49/302 (16%), Positives = 66/302 (21%), Gaps = 51/302 (16%)
Query: 396 CSATQPCPALSVCVAGRCKARCAGVVCGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTM 455
C C G+C VC + C D CP G F C +
Sbjct: 101 CPPKTCSQDEFRCHDGKC--ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI 158
Query: 456 PVCIPPCGPNAHCEYNSESPGSSPGS--------------------------------DN 483
P C + CE S+
Sbjct: 159 PQLWA-CDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 217
Query: 484 ICVCNSGTHGNPYAGCGTAGPQ-DRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNP 542
C S A C Q G+C G+ C C + V C +G
Sbjct: 218 DCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN 277
Query: 543 YVQCVGGSVECQCPAGYKGNPYVQCVD---------IDECWSSNTCGSNAVCINTPGSYD 593
+C G N C D N G + VC + Y+
Sbjct: 278 KFKCHSGE---CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 334
Query: 594 CRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSKNA---PCPSGYVCKNSRCTDLCANV 650
C C +G C + CV + C G+
Sbjct: 335 CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS 394
Query: 651 RC 652
Sbjct: 395 IA 396
Score = 37.5 bits (86), Expect = 0.015
Identities = 57/316 (18%), Positives = 84/316 (26%), Gaps = 31/316 (9%)
Query: 288 GSGSPRTECRVDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCR---CELGYT 344
+GS C +C G C+ R C + C ASC C
Sbjct: 93 DNGSDEQGCPPKTCSQDEFRCHDGKCI--SRQFVCDSDRDCLDGSDEASCPVLTCGPASF 150
Query: 345 EGLNGKCVSLCEGIVCAPGAACIVTPAGPTCTCADGARGNPFPGGACYPDLCSATQPCPA 404
+ + C+ C C C CSA +
Sbjct: 151 QCNSSTCIPQLW--ACDNDPDCEDGSDEWPQRC------RGLYVFQGDSSPCSAFEFHCL 202
Query: 405 LSVCVAGRCKARCAGVVCGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGP 464
C+ RC G + C P + NC+ C
Sbjct: 203 SGECIHSS--WRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKD 260
Query: 465 NAHCEYNSESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCL 524
+ N C+SG C + A C +
Sbjct: 261 MSDEVGCVNVTLCEG--PNKFKCHSGECITLDKVC------------NMARDCRDWSDEP 306
Query: 525 ETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAV 584
+ + EC CP G++ +C DIDEC +TC + +
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQL 364
Query: 585 CINTPGSYDCRCKEGN 600
C+N G Y C+C+EG
Sbjct: 365 CVNLEGGYKCQCEEGF 380
Score = 34.4 bits (78), Expect = 0.16
Identities = 52/268 (19%), Positives = 77/268 (28%), Gaps = 16/268 (5%)
Query: 11 CQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDE 70
+CR Y + + C EC++ + C + K D V
Sbjct: 179 QRCRGLYVF---QGDSSPCSAFEFHCLSGECIHSSW---RCDGGPDCKDKSDEENCAVAT 232
Query: 71 CAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRA 130
C C G GS C + C C+
Sbjct: 233 CRPDEFQCSDGNCI---HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITL 289
Query: 131 ACVCPA----PYYADVNDGHKCKSPCERFSCGINAQCTPA-DPPQCTCLAGYTGEATLGC 185
VC ++D + C + G + C +C C G+ A C
Sbjct: 290 DKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC 349
Query: 186 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCL 245
D+DEC C S LCVN +GG+KC C +G DP+T C GS ++
Sbjct: 350 EDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 407
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVC 273
+ L +
Sbjct: 408 KMTLDRSEYTSLIPNLRNVVALDTEVAS 435
Score = 34.0 bits (77), Expect = 0.18
Identities = 58/320 (18%), Positives = 90/320 (28%), Gaps = 21/320 (6%)
Query: 3 NNQCNTLECQCRPPYQIVAGECTLATCGTQGQCPGG---AECVNIAGGVSYCACPKGFRP 59
C+ E +C I C + C G A C + G + C
Sbjct: 103 PKTCSQDEFRCHDGKCI----SRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI 158
Query: 60 KEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDAD 119
+ C++ +C + + + C C H+ +C D
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 218
Query: 120 C-------DGPYERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPA--DPPQ 170
C + C C + + C+ S + P +
Sbjct: 219 CKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNK 278
Query: 171 CTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGS 230
C +G C +C S NE C C+
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL-- 336
Query: 231 GSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSG 290
P V + C D+DEC C S LCVN +GG+KC C +G DP+T C G
Sbjct: 337 -CPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 393
Query: 291 SPRTECRVDKECSPSLQCRG 310
S ++ +
Sbjct: 394 SIAYLFFTNRHEVRKMTLDR 413
Score = 31.0 bits (69), Expect = 1.6
Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 5/132 (3%)
Query: 534 CPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYD 593
+ + C+ GS E CP G QC C ++ C + +
Sbjct: 119 ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 178
Query: 594 CRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSKNAPCPSGYVCKNSRCTDLCANVRCG 653
RC+ +P + C C + C G CK+ + CA C
Sbjct: 179 QRCRGLYVFQGD--SSPCSAFEFHC-LSGEC-IHSSWRCDGGPDCKDKSDEENCAVATCR 234
Query: 654 PRA-LCVQGQCL 664
P C G C+
Sbjct: 235 PDEFQCSDGNCI 246
Score = 29.8 bits (66), Expect = 3.6
Identities = 22/164 (13%), Positives = 34/164 (20%), Gaps = 3/164 (1%)
Query: 10 ECQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVD 69
E C+ V G EC+ + C + R D ++
Sbjct: 255 EYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD---KVCNMARDCRDWSDEPIKECG 311
Query: 70 ECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVR 129
+ G VC + Y C CP C D
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 371
Query: 130 AACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTC 173
C C + D + + N +
Sbjct: 372 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 34.0 bits (78), Expect = 0.010
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 568 VDIDECWSSNTCGSNA-------VCINTPGSYDCRCKEG 599
VD+DEC S + G +C N G Y C C+ G
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPG 40
Score = 32.0 bits (73), Expect = 0.053
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 66 EDVDECAESRHLCGPGA------VCINHPGSYTCQCPP 97
D+DECA +C N+ G Y C C P
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRP 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.021
Identities = 53/333 (15%), Positives = 75/333 (22%), Gaps = 167/333 (50%)
Query: 335 ASCRCELGYTEG-----LNGKCVSLC-EGIVCAPGAACIVTPAGPTCTCAD--------- 379
+ + LG+T G L G + +G+V A + +
Sbjct: 251 VTAKL-LGFTPGELRSYLKG--ATGHSQGLV----TAVAIAETD---SWESFFVSVRKAI 300
Query: 380 ------GARG-NPFPGGACYPDLCSAT------QPCPALSVC------VAGRCKARCA-- 418
G R +P + P + + P P LS+ V +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 419 ------------G----VVCG------------AGAQCDPALDRCVCP-----PFYVGDP 445
G VV G A+ LD+ P
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL--KFSN 418
Query: 446 EFNCVPPVTMPVCIPPCGPNAHCEY---------------NSESPGSS---P------GS 481
F PV P H N P GS
Sbjct: 419 RFL---PVASPF---------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 482 D----------NICVC-------------NSGTHGNPYAGCGTA---GPQDRGSCDSGAG 515
D I C TH GP G SG G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---------ILDFGP---GG-ASGLG 513
Query: 516 -LC-----GPGAQCLETGGSVECQCPA---GYK 539
L G G + + G+++ P G+K
Sbjct: 514 VLTHRNKDGTGVRVI-VAGTLDIN-PDDDYGFK 544
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 36.8 bits (84), Expect = 0.024
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSL 306
V+EC C S C N +G F+C C G P C G ++ +
Sbjct: 1 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 307 QCRGGACVDPCRSVE 321
++E
Sbjct: 59 LPHRSEYTLLLNNLE 73
Score = 35.2 bits (80), Expect = 0.073
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 188 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGS 232
V+EC C S C N +G F+C C G P C G
Sbjct: 1 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP 43
Score = 32.2 bits (72), Expect = 0.55
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 570 IDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNP 604
++EC C + C N+ G++ C C+ G P
Sbjct: 1 VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRP 33
Score = 31.4 bits (70), Expect = 1.0
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 68 VDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHA 110
V+ECAE C C N G++ C C P A
Sbjct: 1 VNECAEE-GYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKA 40
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 35.0 bits (81), Expect = 0.035
Identities = 37/193 (19%), Positives = 55/193 (28%), Gaps = 43/193 (22%)
Query: 89 GSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYERCVRAACVCPAPYYADVNDGHKC 148
G C G GC C D G Y C + + C
Sbjct: 15 GRSAVTCDDYYYGF---GCN---KFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAIC 68
Query: 149 KSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKG 208
+ C + C P C C G+ G D+C+ P +C
Sbjct: 69 RQGC----SPKHGSCK--LPGDCRCQYGWQGL------YCDKCIP-HPGCVHGICNE--- 112
Query: 209 GFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNE-KG 267
++C+C G C D++ C PC + C N
Sbjct: 113 PWQCLCETNWGGQ--------------LCDK------DLNYCGTHQPCLNGGTCSNTGPD 152
Query: 268 GFKCVCPKGTTGD 280
++C CP+G +G
Sbjct: 153 KYQCSCPEGYSGP 165
Score = 31.6 bits (72), Expect = 0.58
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 529 SVECQCPAGYKGN------PYVQCVGG----SVECQCPAGYKGNPYVQC-VDIDECWSSN 577
+C+C G++G P+ CV G +C C + G C D++ C +
Sbjct: 82 PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQ---LCDKDLNYCGTHQ 138
Query: 578 TCGSNAVCINT-PGSYDCRCKEG 599
C + C NT P Y C C EG
Sbjct: 139 PCLNGGTCSNTGPDKYQCSCPEG 161
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 35.8 bits (82), Expect = 0.043
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 41 CVNIAGGVSY-CACPKGFRPKEDG-YCEDVDECAESRH 76
C+ Y CACP G + E+G C+D + H
Sbjct: 281 CLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHHHH 318
Score = 30.0 bits (67), Expect = 2.7
Identities = 10/52 (19%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGK-CVSLCE 356
+ + C L P C C G NGK C
Sbjct: 261 QRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 33.5 bits (76), Expect = 0.045
Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 35 CPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINH-PGSYTC 93
P A C G C GF+ C E+ C P A C C
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVEC 77
Query: 94 QCPPNSSG 101
+C S
Sbjct: 78 KCTKEGSE 85
Score = 32.4 bits (73), Expect = 0.13
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 152 CERFSCGINAQCTPADP--PQCTCLAGYTGEATLGCLDVDECLGVSP--CASSALCV-NE 206
C + NA C + CL G+ C+ + CA A C ++
Sbjct: 13 CIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGK-CVPASITCEENNGGCAPEAECTMDD 71
Query: 207 KGGFKCVCPKGTTGDPYT-LGCVGSGSPR 234
K +C C K + + + C S P
Sbjct: 72 KKEVECKCTKEGSEPLFEGVFCSSSSGPH 100
Score = 30.5 bits (68), Expect = 0.64
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 549 GSVECQCPAGYKGNPYVQCVDIDECWSSN-TCGSNAVCINT-PGSYDCRCKEGNAG 602
G+ E +C G+K C +N C A C +C+C + +
Sbjct: 30 GTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSE 85
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 35.5 bits (82), Expect = 0.046
Identities = 21/128 (16%), Positives = 29/128 (22%), Gaps = 25/128 (19%)
Query: 506 DRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYV 565
C S C C ++ C C GY+G C+
Sbjct: 4 GGSPCISQ--PCLHNGSCQDSIWGYTCTCSPGYEG----------SNCEL---------- 41
Query: 566 QCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCV 625
+EC T G C+ SY C C +G +
Sbjct: 42 ---AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
Query: 626 CSKNAPCP 633
P
Sbjct: 99 APDLQDLP 106
Score = 35.5 bits (82), Expect = 0.053
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPYER 126
C C C + YTC C P G C A+ +C + DG
Sbjct: 4 GGSPCISQ--PCLHNGSCQDSIWGYTCTCSPGYEGS---NCELAKNECHPE-RTDGCQHF 57
Query: 127 CV----RAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQC 171
C+ C C Y D +C + + ++ D
Sbjct: 58 CLPGQESYTCSCAQG-YRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 35.5 bits (82), Expect = 0.060
Identities = 18/111 (16%), Positives = 27/111 (24%), Gaps = 21/111 (18%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
C+ PC + C + G+ C C G G L
Sbjct: 4 GGSPCIS-QPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--------------------LA 42
Query: 247 VDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECR 297
+EC C+ + + C C +G CV
Sbjct: 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93
Score = 34.3 bits (79), Expect = 0.12
Identities = 17/113 (15%), Positives = 23/113 (20%), Gaps = 20/113 (17%)
Query: 568 VDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCS 627
C S C N C ++ Y C C G G + C +
Sbjct: 3 KGGSPC-ISQPCLHNGSCQDSIWGYTCTCSPGYEG-------------------SNCELA 42
Query: 628 KNAPCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCLCPSDLIGNPTDLTRGC 680
KN P C + C G+
Sbjct: 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTS 95
Score = 34.3 bits (79), Expect = 0.14
Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 151 PCERFSCGINAQCTPA-DPPQCTCLAGYTGEATLGC-LDVDECLGVSPCASSALCVNEKG 208
PC C N C + CTC GY G C L +EC C+ +
Sbjct: 7 PCISQPCLHNGSCQDSIWGYTCTCSPGYEGSN---CELAKNECHPERTDGCQHFCLPGQE 63
Query: 209 GFKCVCPKGTTGDPYTLGCVGSGSPRTECR 238
+ C C +G CV
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93
Score = 32.8 bits (75), Expect = 0.37
Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 13/101 (12%)
Query: 246 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPS 305
C+ PC + C + G+ C C G G E ++
Sbjct: 4 GGSPCIS-QPCLHNGSCQDSIWGYTCTCSPGYEGSNC------------ELAKNECHPER 50
Query: 306 LQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEG 346
C+ S C + C G
Sbjct: 51 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG 91
Score = 30.1 bits (68), Expect = 2.4
Identities = 19/100 (19%), Positives = 26/100 (26%), Gaps = 1/100 (1%)
Query: 315 DPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGA-ACIVTPAGP 373
PC S C + C+ +C C GY + C C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 374 TCTCADGARGNPFPGGACYPDLCSATQPCPALSVCVAGRC 413
TC+CA G R D C+
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 31.3 bits (72), Expect = 0.069
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 67 DVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGD 102
D D+C + C G C + SY C CP G
Sbjct: 2 DGDQCESN--PCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 30.5 bits (70), Expect = 0.11
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 568 VDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
VD D+C SN C + C + SY+C C G
Sbjct: 1 VDGDQC-ESNPCLNGGSCKDDINSYECWCPFG 31
Score = 30.5 bits (70), Expect = 0.12
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 186 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 221
+D D+C +PC + C ++ ++C CP G G
Sbjct: 1 VDGDQCES-NPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 30.5 bits (70), Expect = 0.12
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 245 LDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
+D D+C +PC + C ++ ++C CP G G
Sbjct: 1 VDGDQCES-NPCLNGGSCKDDINSYECWCPFGFEGK 35
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.1 bits (73), Expect = 0.11
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 46 GGVSYCACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINH--PGSYTCQCPPNSSGD 102
V YC C G V C+E R C G C + CQCP +G
Sbjct: 29 NRVEYCWCNSGRAQCH---SVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEGFAGK 82
Score = 29.4 bits (66), Expect = 1.0
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 147 KCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVN- 205
K + ++ + C C +G + V C C + C
Sbjct: 10 KTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRAQCH---SVPVKSCSE-PRCFNGGTCQQA 65
Query: 206 -EKGGFKCVCPKGTTGD 221
F C CP+G G
Sbjct: 66 LYFSDFVCQCPEGFAGK 82
Score = 27.1 bits (60), Expect = 7.4
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 27/82 (32%)
Query: 523 CLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSN 582
L + C C +G V + C S C +
Sbjct: 25 VLRSNRVEYCWCNSGRAQC------------------------HSVPVKSC-SEPRCFNG 59
Query: 583 AVCINT--PGSYDCRCKEGNAG 602
C + C+C EG AG
Sbjct: 60 GTCQQALYFSDFVCQCPEGFAG 81
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 33.6 bits (77), Expect = 0.11
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 558 GYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
Y DI+EC + C N G Y C C
Sbjct: 105 FTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPE 146
Score = 30.5 bits (69), Expect = 0.90
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 55 KGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPN 98
+ D++EC + + C N G Y C CPP
Sbjct: 104 RFTGFAAYYVATDINECTDFVDVPCSH-FCNNFIGGYFCSCPPE 146
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.8 bits (79), Expect = 0.11
Identities = 12/100 (12%), Positives = 20/100 (20%), Gaps = 2/100 (2%)
Query: 532 CQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGS 591
+ + + G V+ G C +E C + VC
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSP-CEAGEEG-EGGVCLNGGVCSVVDDQ 210
Query: 592 YDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCSKNAP 631
C C + + C P
Sbjct: 211 AVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNP 250
Score = 32.5 bits (73), Expect = 0.56
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 1/60 (1%)
Query: 165 PADPPQCTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPK-GTTGDPY 223
P D + + E C + +C C C + G G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Score = 32.1 bits (72), Expect = 0.79
Identities = 8/46 (17%), Positives = 9/46 (19%)
Query: 51 CACPKGFRPKEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCP 96
P G +C G VC C C
Sbjct: 171 EVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Score = 31.4 bits (70), Expect = 1.4
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 285 GCVGSGSPRTECRVDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRC-ELGY 343
+ E ++D E S + C +C D +A C C G+
Sbjct: 161 SSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGF 220
Query: 344 TEGLNGKCVSLCEGIVCAPGAACIVTPAGPTCTCAD 379
+ C P + +D
Sbjct: 221 RGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSD 256
Score = 31.4 bits (70), Expect = 1.5
Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 481 SDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPA-GYK 539
+ + P G + + + G +C G C C C G++
Sbjct: 164 ALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG--VCLNGGVCSVVDDQAVCDCSRTGFR 221
Query: 540 GNPYVQCVGGSVECQCPAGYKGNPYVQ 566
G Q + + Y Q
Sbjct: 222 GKDCSQGKEEYIATFKGSEYFCYDLSQ 248
Score = 31.4 bits (70), Expect = 1.6
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 179 GEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPY 223
G+ GC C++ +C+ + GF C C + P
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
Score = 30.6 bits (68), Expect = 2.5
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 243 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPY 282
GC C++ +C+ + GF C C + P
Sbjct: 1012 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
Score = 29.8 bits (66), Expect = 4.6
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 4/80 (5%)
Query: 9 LECQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDV 68
++ PP C G G C G C + C C + G
Sbjct: 172 VKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV-CDCSRTGF---RGKDCSQ 227
Query: 69 DECAESRHLCGPGAVCINHP 88
+ G C +
Sbjct: 228 GKEEYIATFKGSEYFCYDLS 247
Score = 29.0 bits (64), Expect = 7.2
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 567 CVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPF 605
C ++C + VC+ + C C + P
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 34.8 bits (79), Expect = 0.13
Identities = 47/297 (15%), Positives = 70/297 (23%), Gaps = 38/297 (12%)
Query: 396 CSATQPCPALSVCVAGRCKARCAGVVCGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTM 455
C C G+C VC + C D CP G F C +
Sbjct: 83 CPPKTCSQDEFRCHDGKC--ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI 140
Query: 456 PVCIPPCGPNAHCEYNSESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAG 515
P C + CE S+ D C +
Sbjct: 141 PQLWA-CDNDPDCEDGSDEWPQR------------------CRGLYVFQGDSSPCSAFEF 181
Query: 516 LCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWS 575
C G +C + ++ + C S E C QC D +
Sbjct: 182 HCLSG-EC----------IHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHG 230
Query: 576 SNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHS--CEDPATCV----CSKN 629
S C C + C G C + C C
Sbjct: 231 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 290
Query: 630 APCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCLCPSDLIGNPTDLTRGCQVKGQC 686
+ + N C+ +C +++ G LC G L + + C
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLC 347
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 34.3 bits (78), Expect = 0.17
Identities = 47/310 (15%), Positives = 74/310 (23%), Gaps = 34/310 (10%)
Query: 296 CRVDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLC 355
C ++ C G D C + ++ +G+ + L + C
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 356 EGIVCAPGAACIVTPAGPTCTCADGARGNPFPGGACYPDLCSATQPCPALSVCVAGRCKA 415
+ A T G C P + C + + +
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGV-------CRCGPGWLGSQCECSEEDYRPSQQDEC 486
Query: 416 RCAGVVCGAGAQCDPALDRCVCPPFYVGDP-EFNCVPPVTMPVCIPP--CGPNAHCEYNS 472
+ + +CVC G C V C + C
Sbjct: 487 SPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQC---- 542
Query: 473 ESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVEC 532
S C+C+S G C D +G LC +C GS C
Sbjct: 543 --------SCGDCLCDSDWTGY---YCNCTTRTDTCMSSNG-LLCSGRGKC--ECGSCVC 588
Query: 533 QCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSY 592
G G+ +C C V+C D + N C + S
Sbjct: 589 -IQPGSYGDTCEKCPTCPDACTF-----KKECVECKKFDRGALHDENTCNRYCRDEIESV 642
Query: 593 DCRCKEGNAG 602
G
Sbjct: 643 KELKDTGKDA 652
Score = 33.5 bits (76), Expect = 0.26
Identities = 49/298 (16%), Positives = 72/298 (24%), Gaps = 60/298 (20%)
Query: 27 ATCGTQGQCPGGAECVNIAGG-------------------VSYCACPKGFRPKEDGYCED 67
ATC PG C+ + G S+ P GF+
Sbjct: 372 ATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTF 431
Query: 68 VDECAESRHLCGPGAVCINHPGSY---TCQCPPNSSGD-------PLLGCTHARVQCSRD 117
+CA C N G++ C+C P G
Sbjct: 432 DCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREG 491
Query: 118 ADCDGPYERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPA-------DPPQ 170
C+ CVC + + G CE
Sbjct: 492 QPVCSQRGECLCGQCVCHSSDF-----GKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD 546
Query: 171 CTCLAGYTGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLG---- 226
C C + +TG + ++ LC G KC C P + G
Sbjct: 547 CLCDSDWTGYYC----NCTTRTDTCMSSNGLLC---SGRGKCECGSCVCIQPGSYGDTCE 599
Query: 227 ----CVGSGSPRTECRVDKVGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGD 280
C + + + EC V C D + C +E K + G
Sbjct: 600 KCPTCPDACTFKKEC----VECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAV 653
Score = 30.1 bits (67), Expect = 3.1
Identities = 46/312 (14%), Positives = 74/312 (23%), Gaps = 43/312 (13%)
Query: 90 SYTCQCPPNSSGDPLLGCTHAR----VQCSRDADCDGPYERCVRAACVCPAPY--YADVN 143
S+ C N L C + V S +A G + ++ + P + V
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 144 DGHKCKSPCERFSCGINAQCTPA----DPPQCTCLAGYTGEA--TLGCLDVDECLGVSPC 197
C C+ + + +C + C C G+ G
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSP 488
Query: 198 ASSALCVNEKG---GFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLDVDECLGVS 254
+++G +CVC G C D C+
Sbjct: 489 REGQPVCSQRGECLCGQCVCHSSDFGKITG----------KYCECDDFSCVRYKGE---- 534
Query: 255 PCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKECSPSLQCRGGACV 314
C+ C C+C TG CS +C G+CV
Sbjct: 535 MCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCM---SSNGLLCSGRGKCECGSCV 587
Query: 315 DPCRS---VECGAHALCEP--QDHRASCRCELGYTEGL--NGKCVSLCEGIVCAPGAACI 367
C C + C+ L C C + +
Sbjct: 588 CIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKD 647
Query: 368 VTPAGPTCTCAD 379
CT +
Sbjct: 648 TGKDAVNCTYKN 659
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 32.9 bits (75), Expect = 0.36
Identities = 14/104 (13%), Positives = 22/104 (21%), Gaps = 2/104 (1%)
Query: 566 QCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVAC-TPVAVVPHSCEDPATC 624
+ N C + Y C V D +
Sbjct: 52 DFNSAVQLVE-NFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSD 110
Query: 625 VCSKNAPCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCLCPSD 668
+ A S Y + T CG R L + ++
Sbjct: 111 RAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Score = 32.5 bits (74), Expect = 0.56
Identities = 14/109 (12%), Positives = 23/109 (21%), Gaps = 7/109 (6%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCDGPY 124
+ E+ C Y P + L C A + + D D
Sbjct: 53 FNSAVQLVEN--FCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGD-GLDEDS 109
Query: 125 ERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTC 173
+R + A + CG+ T
Sbjct: 110 DRAIEGATATSEYQTFF----NPATFGSGEADCGLRPLFEKKSLEDKTE 154
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.39
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 553 CQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEG 599
+ K ++ D D+C +S+ C + C + SY C C
Sbjct: 31 FKDAERTKLF-WISYSDGDQC-ASSPCQNGGSCKDQLQSYICFCLPA 75
Score = 31.1 bits (71), Expect = 0.51
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 26/107 (24%)
Query: 178 TGEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTEC 237
T + D D+C SPC + C ++ + C C G C
Sbjct: 37 TKLFWISYSDGDQCAS-SPCQNGGSCKDQLQSYICFCLPAFEG--------------RNC 81
Query: 238 RVDKVGCLDVDECLGVSPCA---SSALCVNEKG-GFKCVCPKGTTGD 280
D+ L C + G C C +G +
Sbjct: 82 E------THKDDQLI-CVNENGGCEQYCSDHTGTKRSCRCHEGYSLL 121
Score = 30.4 bits (69), Expect = 1.1
Identities = 15/91 (16%), Positives = 20/91 (21%), Gaps = 26/91 (28%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKG------------NPY---------VQCVGGSVECQC 555
C G C + S C C ++G G C+C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 556 PAGYKGNPYVQC-VDIDECWSSNTCGSNAVC 585
GY V CG +
Sbjct: 115 HEGYSLL---ADGVSCTPT-VEYPCGKIPIL 141
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 65 CEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
D D+CA S C G C + SY C C P
Sbjct: 44 YSDGDQCASS--PCQNGGSCKDQLQSYICFCLP 74
>4f88_1 Plyca; lysin, bacteriophage, antimicrobial protein, viral protein;
3.30A {Streptococcus phage C1}
Length = 465
Score = 33.0 bits (74), Expect = 0.39
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 17/144 (11%)
Query: 476 GSSPGSDNICVCN-----SGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSV 530
GS+ T+ P P + AG Q L
Sbjct: 94 GSNGLECLEHDLQYIHGVWETYFPPALSAPECYPATEDN----AGALDRFYQSLPGRTWG 149
Query: 531 ECQCPAGYKGNPYVQCVGGSVECQ--CPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINT 588
+ P+ GN +V V Q P Y GNPY +D ++ ++ +
Sbjct: 150 DVMIPSTMAGNAWVWAYNYCVNNQGAAPLVYFGNPYDSQIDSLLAMGADPFTGGSITGDG 209
Query: 589 PGSYDCRCKEGNAGNPFVACTPVA 612
GN V+ + A
Sbjct: 210 KNP------SVGTGNATVSASSEA 227
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 32.4 bits (73), Expect = 0.55
Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 12/123 (9%)
Query: 501 TAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYK 560
T D S + AG C A G C + + +C C AGY+
Sbjct: 219 TIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIG------QCLCQAGYE 272
Query: 561 GNPYVQCVDIDECWSSNTCGSNAVCI------NTPGSYDCRCKEGNAGNPFVACTPVAVV 614
+ S + + G+ C C+EG P +
Sbjct: 273 KVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTR 332
Query: 615 PHS 617
P S
Sbjct: 333 PPS 335
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 32.3 bits (73), Expect = 0.66
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 179 GEATLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPY 223
G+ GC C++ +C+ + GF C C + P
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
Score = 31.5 bits (71), Expect = 1.1
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 61 EDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPP 97
E G C C VC+ ++C C
Sbjct: 178 ERGCEGPSTTC--QEDSCSNQGVCLQQWDGFSCDCSM 212
Score = 30.7 bits (69), Expect = 1.6
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 243 GCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPY 282
GC C++ +C+ + GF C C + P
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
Score = 30.7 bits (69), Expect = 1.7
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 12/81 (14%)
Query: 561 GNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAVVPHSCED 620
G C ++C + VC+ + C C + P C D
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL------------CND 222
Query: 621 PATCVCSKNAPCPSGYVCKNS 641
P T Y +
Sbjct: 223 PGTTYIFSKGGGQITYKWPPN 243
Score = 29.6 bits (66), Expect = 3.7
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 6/55 (10%)
Query: 489 SGTHGNPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPY 543
+G GC +C C CL+ C C P
Sbjct: 171 LFCNGQIERGC----EGPSTTCQED--SCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 32.2 bits (72), Expect = 0.70
Identities = 31/176 (17%), Positives = 42/176 (23%), Gaps = 19/176 (10%)
Query: 454 TMPVCIPPCGPNAHCEYNSESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRG----- 508
C C A + N + + C +S C + G G
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 509 SCDSGAGLCGPGAQCL-----ETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNP 563
C +C+ G CP Y +CV S K +
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSR 270
Query: 564 YVQC--------VDIDECWSSNTCG-SNAVCINTPGSYDCRCKEGNAGNPFVACTP 610
C I EC S T SN +C G C + T
Sbjct: 271 RQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTS 326
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 29.6 bits (66), Expect = 0.88
Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 35 CPGGAECVNIAGGVSYCACPKGFRPKEDGYCEDVD-ECAESRHLCGPGAVCI-NHPGSYT 92
P A C G C F+ + C + C P A C N
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKNEIV 71
Query: 93 CQCPPNSSG 101
C+C S
Sbjct: 72 CKCTKEGSE 80
Score = 29.2 bits (65), Expect = 1.4
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 152 CERFSCGINAQCTPADP--PQCTCLAGYTGEATLGCLDVDECLGVS--PCASSALCV-NE 206
C + NA C + CL + +A + CA A C N+
Sbjct: 7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMND 66
Query: 207 KGGFKCVCPKGTTG 220
K C C K +
Sbjct: 67 KNEIVCKCTKEGSE 80
Score = 27.3 bits (60), Expect = 6.9
Identities = 21/86 (24%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 317 CRSVECGAHALCEP-QDHRASCRCELGYTEGLNGKCVSLCEGIV------CAPGAACIVT 369
C +A C D RC L + GKCV CAP A C +
Sbjct: 7 CIDTNVPENAACYRYLDGTEEWRCLLYFK-EDAGKCVPAPNMTCKDKNGGCAPEAECKMN 65
Query: 370 PAGP-TCTCADGARGNPFPGGACYPD 394
C C F G C
Sbjct: 66 DKNEIVCKCTKEGSEPLFEGVFCSHH 91
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 31.5 bits (70), Expect = 1.4
Identities = 10/73 (13%), Positives = 16/73 (21%)
Query: 427 QCDPALDRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSSPGSDNICV 486
QC + C V N +++ P A G + +C
Sbjct: 49 QCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCF 108
Query: 487 CNSGTHGNPYAGC 499
T
Sbjct: 109 LLGPTQLTQRLPV 121
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 30.3 bits (68), Expect = 1.4
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 55 KGFRPKEDGYCEDVDECAES-RHLCGPGAVCINHPGSYTCQCPPN 98
+ ED+DEC + C NH G + C C
Sbjct: 111 PFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAG 155
Score = 29.1 bits (65), Expect = 3.8
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 564 YVQCVDIDECWSSNT--CGSNAVCINTPGSYDCRCKEG 599
+ DIDEC + + C N G + C C+ G
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAG 155
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 31.0 bits (69), Expect = 1.6
Identities = 51/440 (11%), Positives = 84/440 (19%), Gaps = 37/440 (8%)
Query: 2 LNNQCNTLECQCRPPYQIVAGECTLATCGTQGQCPGGAECVNIAGGVSYCACPKGFRPKE 61
+ ++ + P +V T + G
Sbjct: 455 VKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLS 514
Query: 62 DGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPNSSGDPLLGCTHARVQCSRDADCD 121
C V + P + A + SR +C+
Sbjct: 515 GTECLCVCQSG-----TYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECN 569
Query: 122 GPYERCVRAACVCPAPYYADVNDGHKCKSPCERFSCGINAQCTPADPPQCTCLAGYTGEA 181
P + C + + + C D
Sbjct: 570 NPAPQRGGKRC---------EGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEAD 620
Query: 182 TLGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDK 241
+ V G V E C+ G G C D
Sbjct: 621 SGCPQPVPPENGFIRNEKQLYLVGEDVEISCL-----------TGFETVGYQYFRCLPDG 669
Query: 242 VGCLDVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGC----VGSGSPRTECR 297
EC V E G+ L C V +G R C+
Sbjct: 670 TWRQGDVECQRTECI---KPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQ 726
Query: 298 VDKECSPSLQCRGGACVDPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEG 357
+ P + + E + CV +
Sbjct: 727 GNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDS 786
Query: 358 IVCAPGAACIVTPAGPTCTCADGARGNPFPGGACYPDLCSATQPCPALSVCVAGRCKARC 417
AC C + + + G+C + K C
Sbjct: 787 NDYFTSPACKFL----AEKCLNNQQLHFLHIGSCQDG-RQLEWGLERTRLSSNSTKKESC 841
Query: 418 AGVVCGAGAQCDPALDRCVC 437
C +C + +CVC
Sbjct: 842 GYDTCYDWEKCSASTSKCVC 861
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.3 bits (67), Expect = 2.9
Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 19/112 (16%)
Query: 3 NNQCNTLECQCRPPYQIVAGECTLATCG-----TQGQCPGGAECVNIAGGVSYCACPKGF 57
+ QC+ C+ + +C + C +C E + V CP
Sbjct: 57 HKQCSKCLEPCKESGDLRKHQC-QSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPE 115
Query: 58 RP-----------KEDGYCEDVDECAESRHLCGPGAVCINHPGSYTCQCPPN 98
+ + D C V +C + CG P
Sbjct: 116 KASGFAAACVESCEVDNECSGVKKCCSNG--CGHTCQVPKTLYKGVPLKPRK 165
Score = 29.5 bits (65), Expect = 4.8
Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 20/127 (15%)
Query: 585 CINTPGSYDCRCKEG------NAGNPFVACTPVAVVPHSCEDPATCVCSKNAPCPSGYVC 638
++ RC + F C++ C PC
Sbjct: 15 SLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCS-KCLEPCKESGDL 73
Query: 639 KNSRCTDLCANVRCGPRALCV-------------QGQCLCPSDLIGNPTDLTRGCQVKGQ 685
+ +C C + C+ QG C P G C+V +
Sbjct: 74 RKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNE 133
Query: 686 CANDLEC 692
C+ +C
Sbjct: 134 CSGVKKC 140
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.1
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 7/17 (41%)
Query: 392 Y-PDLCSATQPCPALSV 407
Y D SA PAL++
Sbjct: 32 YADD--SA----PALAI 42
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.2 bits (67), Expect = 3.2
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 17 YQIVAGECTLATCGTQGQCPGGAE--CVNIAGGVSYCACPKGFRPKEDG-YCEDVDECAE 73
+ + Q GG C+ G + C+CP +D C
Sbjct: 567 HAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHHHH 626
Score = 30.2 bits (67), Expect = 3.3
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 3/101 (2%)
Query: 187 DVDECLGVSPCASSALCVNEKGGFKCVCPKGTTGDPYTLGCVGSGSPRTECRVDKVGCLD 246
D+ G++ + K + + +
Sbjct: 206 DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQG-HLDYVMDILVFHSSRQSG 264
Query: 247 VDECLGVSPCASSALCV-NEKGGFKCVCPKGTTGDPYTLGC 286
+EC S S LC+ GGF C CP + + C
Sbjct: 265 WNEC-ASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTC 304
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.8 bits (61), Expect = 4.0
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 10/81 (12%)
Query: 78 CGPGAVCINH-PGSYTCQCPPNSSGD-------PLLGCTHARVQCSRDADC--DGPYERC 127
C + C H C+C N + P C C DA C +
Sbjct: 12 CPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNG 71
Query: 128 VRAACVCPAPYYADVNDGHKC 148
+ C C P + DG C
Sbjct: 72 KKITCECTKPDSYPLFDGIFC 92
Score = 27.0 bits (59), Expect = 9.4
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 33 GQCPGGAECVNIAGGVSYCACPKGFRPKEDG-YCEDVDECAESRHLCGPGAVCINHPGS- 90
QCP + C C C ++ + D C E+ C A C
Sbjct: 10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGS 69
Query: 91 ----YTCQCPPNSSG 101
TC+C S
Sbjct: 70 NGKKITCECTKPDSY 84
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 29.7 bits (66), Expect = 4.3
Identities = 39/211 (18%), Positives = 54/211 (25%), Gaps = 33/211 (15%)
Query: 422 CGAGAQCDPALDRCVCPPFYVGDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGSSPGS 481
AG + + + C P C C + E G
Sbjct: 162 QDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGE---- 217
Query: 482 DNICVCNSGTHG---NPYAGCGTAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGY 538
C+C G G T G + C G C CL C C G+
Sbjct: 218 ---CICPPGFMGRTCEKACELHTFGRTCKERCSGQEG-CKSYVFCLPDPY--GCSCATGW 271
Query: 539 KGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKE 598
KG QC C G+ G +C +C + +C G C C
Sbjct: 272 KGL---QC-----NEACHPGFYG---------PDCKLRCSCNNGEMCDRFQG---CLCSP 311
Query: 599 GNAGNPFVACTPVAVVPHSCEDPATCVCSKN 629
G G + P + P +
Sbjct: 312 GWQGLQCEREGIPRMTPKIVDLPDHIEVNSG 342
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 29.3 bits (65), Expect = 4.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 76 HLCGPGAVCINHPGSYTCQCPPN 98
+LC P H +TC CP
Sbjct: 282 YLCLPAPQINPHSPKFTCACPDG 304
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.4 bits (65), Expect = 4.7
Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 4/134 (2%)
Query: 313 CVDPCRSVECGAHA-LCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIVTPA 371
+ +C HA +C + + +C CE T GKC +G +PG+ + P
Sbjct: 290 DIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS-YLPIPK 348
Query: 372 GPTCTCADGARGNPFPGGACYPDLCSATQPC--PALSVCVAGRCKARCAGVVCGAGAQCD 429
G C C C +C A C + C C
Sbjct: 349 GAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCG 408
Query: 430 PALDRCVCPPFYVG 443
+ P
Sbjct: 409 SDSGQGAPPHGTHH 422
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 28.2 bits (63), Expect = 5.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 517 CGPGAQCLETGGSVECQCPAGYKG 540
C +C+ET + C+C G+ G
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
Score = 27.8 bits (62), Expect = 8.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 575 SSNTCGSNAVCINTPGSYDCRCKEG 599
++ +C + C+ T +Y C+C G
Sbjct: 123 TNTSCSGHGECVETINNYTCKCDPG 147
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.1 bits (64), Expect = 5.7
Identities = 22/217 (10%), Positives = 44/217 (20%), Gaps = 32/217 (14%)
Query: 454 TMPVCIPPCGPNAHCEYNSESPGSSPGSDNICVCNSGTHGNPYAGCGTAGPQDRGSCDSG 513
C C + + P + + C + +H
Sbjct: 151 DNEECGDICPG--TAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCC 208
Query: 514 AGLCGPGAQCLETGGSVECQCPAGYKGNPYVQCVGGSVECQCPAGYKGNPYVQCVDIDEC 573
C + +C A +CV CP Y +CV+ C
Sbjct: 209 HSECLGNC----SQPDDPTKCVACRNFYLDGRCV-----ETCPPPYYHFQDWRCVNFSFC 259
Query: 574 WSSN-TCGSNAVCINTP-----GSYDCRCKEGNAGNPFVACTPVAVVPHSCEDPATCVCS 627
+ C ++ C G C
Sbjct: 260 QDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGY---------------TMNSSNLLCTPC 304
Query: 628 KNAPCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCL 664
++ + + D + + + G +
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLI 341
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase;
HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB:
1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A*
1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A*
1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...
Length = 253
Score = 28.7 bits (64), Expect = 6.9
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 315 DPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIVT 369
DP R + A + R GYT G+ +S+ + P + VT
Sbjct: 24 DPLR-AKYIAENFLDNAVQVCDVRNMFGYTGTYKGRRISVMGHGMGIPSCSIYVT 77
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase,
riken structural genomics/proteomics initiative, RSGI;
1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A*
1odi_A 1odl_A
Length = 235
Score = 28.6 bits (64), Expect = 7.0
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 315 DPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIV 368
DP R E A + R GYT G VS+ + P AA +V
Sbjct: 22 DPGR-AEWIAKTFLQNPRRYNDHRGLWGYTGLYKGVPVSVQTTGMGTPSAAIVV 74
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 28.6 bits (63), Expect = 8.8
Identities = 36/234 (15%), Positives = 64/234 (27%), Gaps = 19/234 (8%)
Query: 443 GDPEFNCVPPVTMPVCIPPCGPNAHCEYNSESPGS-SPGSDNICVCNSG-THGNPYAGCG 500
G + + + PP + + S G+ CN G G ++ G
Sbjct: 491 GTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIG 550
Query: 501 TAGPQDRGSCDSGAGLCGPGAQCLETGGSVECQCPAGYKGNPYVQC-----VGGSVECQC 555
+ + + GP C + +V+C G +V +C
Sbjct: 551 ESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKC 610
Query: 556 PAGYK--GNPYVQCVDIDECWSSNTCGSNAVCINTPGSYDCRCKEGNAGNPFVACTPVAV 613
+G+ G+ ++C D W A + V +
Sbjct: 611 YSGFTLKGSSQIRCKA-DNTWDPEIPVCEKETCQHVRQSL---------QELPAGSRVEL 660
Query: 614 VPHSCEDPATCVCSKNAPCPSGYVCKNSRCTDLCANVRCGPRALCVQGQCLCPS 667
V SC+D C + LC + C P + V G+
Sbjct: 661 VNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGKHTGMM 714
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica}
PDB: 3tl6_A*
Length = 242
Score = 28.3 bits (63), Expect = 9.4
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 315 DPCRSVECGAHALCEPQDHRASCRCELGYTEGLNGKCVSLCEGIVCAPGAACIVT 369
DP R V+ A S R +GYT G +S+ + P
Sbjct: 30 DPLR-VKLLADTYLTDVVQYNSVRGAVGYTGYYKGVKLSVQAHGMGMPSIGIYAY 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.492
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,555,331
Number of extensions: 763805
Number of successful extensions: 5066
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2939
Number of HSP's successfully gapped: 990
Length of query: 739
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 638
Effective length of database: 3,881,772
Effective search space: 2476570536
Effective search space used: 2476570536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)