RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy942
(762 letters)
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 377 bits (972), Expect = e-127
Identities = 140/258 (54%), Positives = 181/258 (70%), Gaps = 1/258 (0%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
+ L KVA+VTAS+DGIG AIA+RL+ +GA VV+SSRK+ NV++ V TLQ EG
Sbjct: 4 TGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL 63
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 490
++G VCHV K EDR++L A GG+DILVSNAAVNP G +++ E VWDKI V
Sbjct: 64 -SVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHV 122
Query: 491 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
NVK+T L+T+ V+P + KR GGS++ VSS+G PF LG Y+VSKTALLGLTK +A +L
Sbjct: 123 NVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
A NIRVNCLAPG+ KT F+ L+ + E ++ + RL P++ GIV+FLCS+DA
Sbjct: 183 APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDA 242
Query: 611 SYITGEVIVAAGGMQSRL 628
SYITGE +V GG SRL
Sbjct: 243 SYITGETVVVGGGTASRL 260
Score = 295 bits (758), Expect = 5e-95
Identities = 114/205 (55%), Positives = 145/205 (70%), Gaps = 1/205 (0%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
+ L KVA+VTAS+DGIG AIA+RL+ +GA VV+SSRK+ NV++ V TLQ EG
Sbjct: 4 TGVERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGL 63
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 121
++G VCHV K EDR++L A GG+DILVSNAAVNP G +++ E VWDKI V
Sbjct: 64 -SVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHV 122
Query: 122 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
NVK+T L+T+ V+P + KR GGS++ VSS+G PF LG Y+VSKTALLGLTK +A +L
Sbjct: 123 NVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182
Query: 182 ASENIRVNCLAPGITKTKFAAAKKE 206
A NIRVNCLAPG+ KT F+
Sbjct: 183 APRNIRVNCLAPGLIKTNFSQVLWM 207
Score = 112 bits (283), Expect = 6e-28
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+R++A L+GG+DILVSNAAVNP +++ +E VWDKI VN+K++ L+T+ V+P
Sbjct: 79 ERLVA--MAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVP 136
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
M K+ GGS++ VSS+G +
Sbjct: 137 EMEKRGGGSVLIVSSVGAYH 156
Score = 77.1 bits (191), Expect = 9e-16
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF 678
+G Y+VSKTAL GLTK +A +LAP NIRVNCLAPGLI+T F
Sbjct: 161 LGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNF 201
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 306 bits (785), Expect = 7e-99
Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 2/249 (0%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ--KISG 435
+ +VT GIG +A L GASV+I R + AV+ L+ G I
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ +++ + + G + +V A + GP+ + W + ++NV T
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
+ + + + GGS V +SSI + GAY V+K+A+ L + A +L + +
Sbjct: 128 MYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWV 187
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
RVN + PG+ +T AA+ E+ E P+ R +++ + FL SD AS++TG
Sbjct: 188 RVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTG 247
Query: 616 EVIVAAGGM 624
+VI GG
Sbjct: 248 QVINVDGGQ 256
Score = 238 bits (609), Expect = 5e-73
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--KISG 66
+ +VT GIG +A L A GASV+I R + AV+ L+ G I
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ +++ + + G + +V A + GP+ + W + ++NV T
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
+ + + + GGS V +SSI + GAY V+K+A+ L + A +L + +
Sbjct: 128 MYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAVDHLMQLAADELGASWV 187
Query: 187 RVNCLAPGITKTKFAAA 203
RVN + PG+ +T AA
Sbjct: 188 RVNSIRPGLIRTDLVAA 204
Score = 93.0 bits (232), Expect = 5e-21
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
R + + +G + +V A + P+ + W + D+N+ + + +
Sbjct: 79 ARAVD--AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAR 136
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M + GGS V +SSI
Sbjct: 137 EMVRGGGGSFVGISSIAAS 155
Score = 70.3 bits (173), Expect = 2e-13
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
R+ GAY V+K+A+ L ++ A++L +RVN + PGLIRT +
Sbjct: 158 HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE 207
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 295 bits (757), Expect = 6e-95
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 11/257 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
++GKVAV+T SS GIG AIA+ + EGA +V+ +R+ +++A +L+++ ++ V
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
VA E + E FGG DILV+NA ++E + W +E+ V +
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSN-ETIMEAADEKWQFYWELLVMAAVR 122
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
L + ++P +R R GG+I++ +SI + P Y+V+K AL+ +K +A ++ +NIRV
Sbjct: 123 LARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRV 182
Query: 558 NCLAPGITKTKFAAALYET----------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
NC+ PG+ T + +A + P+ R A P+E+ FLCS
Sbjct: 183 NCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCS 242
Query: 608 DDASYITGEVIVAAGGM 624
+ A+Y G GGM
Sbjct: 243 ERATYSVGSAYFVDGGM 259
Score = 240 bits (616), Expect = 3e-74
Identities = 65/190 (34%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
++GKVAV+T SS GIG AIA+ + EGA +V+ +R+ +++A +L+++ ++ V
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
VA E + E FGG DILV+NA ++E + W +E+ V +
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSN-ETIMEAADEKWQFYWELLVMAAVR 122
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
L + ++P +R R GG+I++ +SI + P Y+V+K AL+ +K +A ++ +NIRV
Sbjct: 123 LARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRV 182
Query: 189 NCLAPGITKT 198
NC+ PG+ T
Sbjct: 183 NCINPGLILT 192
Score = 89.1 bits (222), Expect = 6e-20
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D ++ S +GG DILV+NA ++E ++ W +++ + ++ L + ++P
Sbjct: 73 DAVVE--SVRSSFGGADILVNNAGTGSNE-TIMEAADEKWQFYWELLVMAAVRLARGLVP 129
Query: 740 YMRKKKGGSIVYVSSIGG 757
MR + GG+I++ +SI
Sbjct: 130 GMRARGGGAIIHNASICA 147
Score = 64.5 bits (158), Expect = 2e-11
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y+V+K AL +K +A ++ +NIRVNC+ PGLI T +
Sbjct: 156 IYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAK 200
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 295 bits (757), Expect = 7e-95
Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 7/252 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L G A+VT S GIG+AI + L+ GA V SR E +++ +E +++G + G V
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSV 76
Query: 438 CHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C + + +R KL + F G ++ILV+NA V + E ++ I N ++ +
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI-HKEAKDFTEKDYNIIMGTNFEAAY 135
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+Q P ++ G+++++SSI G + + YS SK A+ +TK++A + A +NIR
Sbjct: 136 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIR 195
Query: 557 VNCLAPGITKTKFAAALYE----TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
VN +APG+ T + +E + + PMGR P E+ ++AFLC ASY
Sbjct: 196 VNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASY 255
Query: 613 ITGEVIVAAGGM 624
ITG++I A GG
Sbjct: 256 ITGQIIWADGGF 267
Score = 233 bits (596), Expect = 3e-71
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 3/196 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G A+VT S GIG+AI + L+ GA V SR E +++ +E +++G + G V
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL-NVEGSV 76
Query: 69 CHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C + + +R KL + F G ++ILV+NA V + E ++ I N ++ +
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI-HKEAKDFTEKDYNIIMGTNFEAAY 135
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+Q P ++ G+++++SSI G + + YS SK A+ +TK++A + A +NIR
Sbjct: 136 HLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIR 195
Query: 188 VNCLAPGITKTKFAAA 203
VN +APG+ T
Sbjct: 196 VNSVAPGVILTPLVET 211
Score = 91.4 bits (228), Expect = 1e-20
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 676 TKFGDRMIAMLSTDKLYGG-IDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLT 734
+R M + ++ G ++ILV+NA V + +E ++ I N ++++ L+
Sbjct: 80 LSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHK-EAKDFTEKDYNIIMGTNFEAAYHLS 138
Query: 735 QEVLPYMRKKKGGSIVYVSSIGGF 758
Q P ++ + G+++++SSI GF
Sbjct: 139 QIAYPLLKASQNGNVIFLSSIAGF 162
Score = 63.3 bits (155), Expect = 4e-11
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
+ YS SK A+ +TK +A + A +NIRVN +APG+I T + I
Sbjct: 168 VSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIK 214
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 291 bits (747), Expect = 2e-93
Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 6/251 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L G A+VT S GIG+ I + L++ GASV SR + +N + + +G + + V
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK-VEASV 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C ++ + +RQ+L F G ++ILV+NA + + + I +N ++ +
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVI-YKEAKDYTVEDYSLIMSINFEAAY 123
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+ P+++ G++V++SS+ G Y +K A+ LT+ +A + A +NIR
Sbjct: 124 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIR 183
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIA---VSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
VN + PG+ T + E E + + R+ P E+ +VAFLC ASY+
Sbjct: 184 VNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYV 243
Query: 614 TGEVIVAAGGM 624
TG++I GG+
Sbjct: 244 TGQIIYVDGGL 254
Score = 231 bits (591), Expect = 1e-70
Identities = 60/230 (26%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G A+VT S GIG+ I + L++ GASV SR + +N + + +G + + V
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK-VEASV 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C ++ + +RQ+L F G ++ILV+NA + + + I +N ++ +
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVI-YKEAKDYTVEDYSLIMSINFEAAY 123
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+ P+++ G++V++SS+ G Y +K A+ LT+ +A + A +NIR
Sbjct: 124 HLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIR 183
Query: 188 VNCLAPGITKTKFAAAKKEVKKKETNDEPIVYTSNTA---PGEMKDVLGP 234
VN + PG+ T + +++ N ++ A GE K++
Sbjct: 184 VNGVGPGVIATSLVEMTIQDPEQKENLNKLI--DRCALRRMGEPKELAAM 231
Score = 91.0 bits (227), Expect = 2e-20
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 689 DKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGS 748
+ +G ++ILV+NA + + + + I +N ++++ L+ P+++ + G+
Sbjct: 82 NHFHGKLNILVNNAGIVIYK-EAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGN 140
Query: 749 IVYVSSIGGF 758
+V++SS+ G
Sbjct: 141 VVFISSVSGA 150
Score = 63.3 bits (155), Expect = 4e-11
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI 695
Y +K A+ LT+ +A + A +NIRVN + PG+I T + I + +
Sbjct: 156 EAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKL 213
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 283 bits (727), Expect = 2e-90
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 11/256 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L KV V++ +G +A+R + +GA +V+++R + + + G + + V
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRAL-SVG 66
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ L + K +G +D++++NA P+ P E+ V
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
L Q P + + G++V V+S+ GAY ++K+ALL +++ +A +L + IRV
Sbjct: 127 LIQGFTPALEES-KGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRV 185
Query: 558 NCLAPGITKTKFAAALYE---------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
N + PG + +E E+ + A + + RL DE+ + F+ SD
Sbjct: 186 NSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASD 245
Query: 609 DASYITGEVIVAAGGM 624
AS ITG+ + G
Sbjct: 246 LASGITGQALDVNCGE 261
Score = 226 bits (578), Expect = 8e-69
Identities = 47/208 (22%), Positives = 92/208 (44%), Gaps = 2/208 (0%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
LT KV V++ +G +A+R + +GA +V+++R + + + G + + V
Sbjct: 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRAL-SVG 66
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ L + K +G +D++++NA P+ P E+ V
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
L Q P + + G++V V+S+ GAY ++K+ALL +++ +A +L + IRV
Sbjct: 127 LIQGFTPALEES-KGAVVNVNSMVVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRV 185
Query: 189 NCLAPGITKTKFAAAKKEVKKKETNDEP 216
N + PG + E + +
Sbjct: 186 NSVLPGYIWGGTLKSYFEHQAGKYGTSV 213
Score = 88.0 bits (219), Expect = 2e-19
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ T K YG +D++++NA P+ +P + ++ + + L Q P
Sbjct: 76 AHLVD--ETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTP 133
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+ ++ G++V V+S+
Sbjct: 134 AL-EESKGAVVNVNSMVVRH 152
Score = 64.9 bits (159), Expect = 1e-11
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDIL 698
GAY ++K+AL +++ +A +L + IRVN + PG I + DI
Sbjct: 158 GAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIY 217
Query: 699 VSNAAVNP 706
+ AA +
Sbjct: 218 NAAAAGSD 225
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 279 bits (716), Expect = 6e-89
Identities = 82/251 (32%), Positives = 130/251 (51%), Gaps = 4/251 (1%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL GK A++T + GIG IA +T GASVV+S N V+ +Q+ G Q
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAF-ACR 66
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
C + +++ L + A K G +DILV+NA + P + + +E+NV S F
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGGPK--PFDMPMADFRRAYELNVFSFFH 124
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
L+Q V P + K GG I+ ++S+ + +Y+ SK A L + +A DL +NIRV
Sbjct: 125 LSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRV 184
Query: 558 NCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEV 617
N +APG T ++ T E + + + P+ RL P ++ FLCS AS+++G++
Sbjct: 185 NGIAPGAILTDALKSVI-TPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQI 243
Query: 618 IVAAGGMQSRL 628
+ +GG L
Sbjct: 244 LTVSGGGVQEL 254
Score = 218 bits (558), Expect = 6e-66
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 3/203 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL GK A++T + GIG IA + GASVV+S N V+ +Q+ G Q
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAF-ACR 66
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C + +++ L + A K G +DILV+NA + P + + +E+NV S F
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGGPK--PFDMPMADFRRAYELNVFSFFH 124
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
L+Q V P + K GG I+ ++S+ + +Y+ SK A L + +A DL +NIRV
Sbjct: 125 LSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRV 184
Query: 189 NCLAPGITKTKFAAAKKEVKKKE 211
N +APG T + + ++
Sbjct: 185 NGIAPGAILTDALKSVITPEIEQ 207
Score = 87.9 bits (219), Expect = 2e-19
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ G +DILV+NA + + + +++N+ S F L+Q V P
Sbjct: 76 SALAD--FAISKLGKVDILVNNAGGGGPK--PFDMPMADFRRAYELNVFSFFHLSQLVAP 131
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M K GG I+ ++S+
Sbjct: 132 EMEKNGGGVILTITSMAAE 150
Score = 61.7 bits (151), Expect = 1e-10
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF 678
+Y+ SK A L + +A DL +NIRVN +APG I T
Sbjct: 157 TSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 196
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 274 bits (704), Expect = 4e-87
Identities = 85/258 (32%), Positives = 142/258 (55%), Gaps = 6/258 (2%)
Query: 370 MSTAVNASR--LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQK 427
M+ A + R L K +VT + GIG AI + + GA + +R E +N+ + QK
Sbjct: 1 MAGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK 60
Query: 428 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDK 486
+G Q ++G VC + + +R+KL + FGG +DIL++N + P ++ +
Sbjct: 61 KGFQ-VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFSF 118
Query: 487 IFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 546
N++S + L+Q P ++ G+I+++SSI G+ + YS +K AL L + +
Sbjct: 119 HISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNL 178
Query: 547 AQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
A + AS+ IR N +AP + T A A+Y+ +E ++ +S P+GR P+E+ +VAFLC
Sbjct: 179 ACEWASDGIRANAVAPAVIATPLAEAVYD-DEFKKVVISRKPLGRFGEPEEVSSLVAFLC 237
Query: 607 SDDASYITGEVIVAAGGM 624
ASYITG+ I GG+
Sbjct: 238 MPAASYITGQTICVDGGL 255
Score = 214 bits (548), Expect = 2e-64
Identities = 64/214 (29%), Positives = 112/214 (52%), Gaps = 5/214 (2%)
Query: 1 MSTAVNASR--LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQK 58
M+ A + R L K +VT + GIG AI + + GA + +R E +N+ + QK
Sbjct: 1 MAGAEQSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK 60
Query: 59 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPATGPVVECPENVWDK 117
+G Q ++G VC + + +R+KL + FGG +DIL++N + P ++ +
Sbjct: 61 KGFQ-VTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFSF 118
Query: 118 IFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 177
N++S + L+Q P ++ G+I+++SSI G+ + YS +K AL L + +
Sbjct: 119 HISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNL 178
Query: 178 AQDLASENIRVNCLAPGITKTKFAAAKKEVKKKE 211
A + AS+ IR N +AP + T A A + + K+
Sbjct: 179 ACEWASDGIRANAVAPAVIATPLAEAVYDDEFKK 212
Score = 86.4 bits (215), Expect = 5e-19
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 676 TKFGDRMIAMLSTDKLYGG-IDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLT 734
+ +R M + ++GG +DIL++N + P ++ + + NL+S++ L+
Sbjct: 73 SLRPEREKLMQTVSSMFGGKLDILINNLGAIRSK-PTLDYTAEDFSFHISTNLESAYHLS 131
Query: 735 QEVLPYMRKKKGGSIVYVSSIGGF 758
Q P ++ G+I+++SSI G
Sbjct: 132 QLAHPLLKASGCGNIIFMSSIAGV 155
Score = 60.2 bits (147), Expect = 4e-10
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI 695
YS +K AL L + +A + A + IR N +AP +I T + + D+ +
Sbjct: 161 GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATP----LAEAVYDDEFKKVV 214
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 271 bits (695), Expect = 1e-85
Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 2/248 (0%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL GK A++T ++ GIG IA+ + GA +V+S R S ++ A L ++ + V
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+A+ + +L A + FGG+D+LV+NA ++ PVV+ ++D VN+++ L
Sbjct: 77 IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISH-PQPVVDTDPQLFDATIAVNLRAPAL 135
Query: 498 LTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L V + GG+I+ V+S LAP AY SK L+ TK +A++L IR
Sbjct: 136 LASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIR 195
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N + P + T+ ++ E ++ +P+GR AVP E+ V +L SD AS I G
Sbjct: 196 ANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGV 255
Query: 617 VIVAAGGM 624
I GG
Sbjct: 256 DIPVDGGY 263
Score = 208 bits (531), Expect = 6e-62
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 2/196 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL GK A++T ++ GIG IA+ +A GA +V+S R S ++ A L ++ + V
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+A+ + +L A + FGG+D+LV+NA ++ PVV+ ++D VN+++ L
Sbjct: 77 IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISH-PQPVVDTDPQLFDATIAVNLRAPAL 135
Query: 129 LTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L V + GG+I+ V+S LAP AY SK L+ TK +A++L IR
Sbjct: 136 LASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIR 195
Query: 188 VNCLAPGITKTKFAAA 203
N + P + T+
Sbjct: 196 ANSVCPTVVLTEMGQR 211
Score = 83.4 bits (207), Expect = 8e-18
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK-KKGGSIV 750
+GG+D+LV+NA ++ P+V+ ++D VNL++ LL V M +GG+I+
Sbjct: 96 FGGLDVLVNNAGISHPQ-PVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAII 154
Query: 751 YVSSIGGF 758
V+S
Sbjct: 155 TVASAAAL 162
Score = 62.9 bits (154), Expect = 5e-11
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY SK L TKV+A +L P IR N + P ++ T+ G R+
Sbjct: 168 HYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG 214
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 270 bits (692), Expect = 2e-85
Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 3/252 (1%)
Query: 375 NASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKIS 434
+ L KV +VT + GIG AIAK+ + + VV E +N+ V+ L+ G + +
Sbjct: 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVL- 59
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
GV V+KK+D ++ + + ID+L +NA + PV E + +W+++ VN+ S
Sbjct: 60 GVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYS 119
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
F ++ V+P + K+ G IV +SI G+ Y+V+K L+GLT+++A +
Sbjct: 120 AFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQG 179
Query: 555 IRVNCLAPGITKTKFAAALYET--EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
IR + PG KT + + RLA P+++ ++ FL SD+AS+
Sbjct: 180 IRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASF 239
Query: 613 ITGEVIVAAGGM 624
+ G+ +V GG+
Sbjct: 240 VNGDAVVVDGGL 251
Score = 212 bits (542), Expect = 9e-64
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 1/193 (0%)
Query: 6 NASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKIS 65
+ L KV +VT + GIG AIAK+ + + VV E +N+ V+ L+ G + +
Sbjct: 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVL- 59
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 125
GV V+KK+D ++ + + ID+L +NA + PV E + +W+++ VN+ S
Sbjct: 60 GVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYS 119
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
F ++ V+P + K+ G IV +SI G+ Y+V+K L+GLT+++A +
Sbjct: 120 AFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQG 179
Query: 186 IRVNCLAPGITKT 198
IR + PG KT
Sbjct: 180 IRAVAVLPGTVKT 192
Score = 88.3 bits (220), Expect = 1e-19
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ + T + Y ID+L +NA + P+ E S+ +W+++ VNL S+F ++ V+P
Sbjct: 72 EEFVR--RTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIP 129
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M K+ G IV +SI G
Sbjct: 130 IMLKQGKGVIVNTASIAGI 148
Score = 60.6 bits (148), Expect = 3e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
Y+V+K L GLT+ +A + IR + PG ++T G
Sbjct: 156 PYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGS 198
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 269 bits (689), Expect = 6e-85
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 7/261 (2%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
+T+ +R +V ++T G+G A A RL+ EGA + + + + + +
Sbjct: 3 ATSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP 62
Query: 431 Q-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 489
++ V V+ + + ++FG ID +NA + P +DK+
Sbjct: 63 DAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVS 122
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
+N++ FL ++VL +R++ G +V +S+GG+ Y+ +K ++GLT+ A +
Sbjct: 123 INLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVE 182
Query: 550 LASENIRVNCLAPGITKTKFAAALYET------EEAHEIAVSNVPMGRLAVPDEMGGIVA 603
IR+N +APG T + +A E + P R E+ +VA
Sbjct: 183 YGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVA 242
Query: 604 FLCSDDASYITGEVIVAAGGM 624
FL SDDASY+ V+ GG
Sbjct: 243 FLLSDDASYVNATVVPIDGGQ 263
Score = 212 bits (541), Expect = 2e-63
Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 1/198 (0%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
+T+ +R T +V ++T G+G A A RL+AEGA + + + + + +
Sbjct: 3 ATSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP 62
Query: 62 Q-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
++ V V+ + + ++FG ID +NA + P +DK+
Sbjct: 63 DAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVS 122
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
+N++ FL ++VL +R++ G +V +S+GG+ Y+ +K ++GLT+ A +
Sbjct: 123 INLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSAVE 182
Query: 181 LASENIRVNCLAPGITKT 198
IR+N +APG T
Sbjct: 183 YGRYGIRINAIAPGAIWT 200
Score = 86.4 bits (215), Expect = 6e-19
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ + +T + +G ID +NA + P + +DK+ +NL+ FL ++VL
Sbjct: 80 EAYVT--ATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLK 137
Query: 740 YMRKKKGGSIVYVSSIGGF 758
MR++ G +V +S+GG
Sbjct: 138 IMREQGSGMVVNTASVGGI 156
Score = 60.2 bits (147), Expect = 5e-10
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILV 699
Y+ +K + GLT+ A + IR+N +APG I T + + L + + +
Sbjct: 164 GYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFI 223
Query: 700 S 700
Sbjct: 224 Q 224
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 268 bits (688), Expect = 8e-85
Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 3/249 (1%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL +VA+VT + IG A L+ GA V+I+ E+ KAVE L+ EGH +S VV
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVV 68
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V E Q ++ G +DILV+ A + + + + W K ++N+ F
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFR 128
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENI 555
Q V + ++ G IV + S+ GL + AY+ SK + +++A + A I
Sbjct: 129 SCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGI 188
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
R N +AP +T E E ++ ++ PMGR+ PDE+ +V FL SD AS +TG
Sbjct: 189 RANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTG 248
Query: 616 EVIVAAGGM 624
++ G
Sbjct: 249 AIVNVDAGF 257
Score = 205 bits (524), Expect = 5e-61
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL +VA+VT + IG A L+ GA V+I+ E+ KAVE L+ EGH +S VV
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGH-DVSSVV 68
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V E Q ++ G +DILV+ A + + + + W K ++N+ F
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFR 128
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENI 186
Q V + ++ G IV + S+ GL + AY+ SK + +++A + A I
Sbjct: 129 SCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGI 188
Query: 187 RVNCLAPGITKT---KFAAAKKEVKKK 210
R N +AP +T +F K E+
Sbjct: 189 RANAVAPTYIETTLTRFGMEKPELYDA 215
Score = 86.8 bits (216), Expect = 3e-19
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ S + G +DILV+ A + + + ++ W K D+NL F Q V
Sbjct: 78 QNAVR--SVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGR 135
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M ++K G IV + S+ G
Sbjct: 136 IMLEQKQGVIVAIGSMSGL 154
Score = 57.5 bits (140), Expect = 3e-09
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDK 690
AY+ SK + + +A + AP IR N +AP I T +
Sbjct: 164 AYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETT----LTRFGMEKP 210
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 268 bits (688), Expect = 9e-85
Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 12/256 (4%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH-QKISGVV 437
+ GK+AVVTA S G+GFA A L+ GA +++ SR + A + ++ V
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ + D +LFE A GG DILV + P G +E WD+ + + +S
Sbjct: 65 GDIREPGDIDRLFEKARD-LGGADILVYSTGG-PRPGRFMELGVEDWDESYRLLARSAVW 122
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
+ + + ++ G +VY+ S+ L P++ L ++ + ++G+ + +A +LA + V
Sbjct: 123 VGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182
Query: 558 NCLAPGITKTKFAAALYET---------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
N + P + T +L E EEA + S +PMGR+ P+E+ +VAFL S+
Sbjct: 183 NAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASE 242
Query: 609 DASYITGEVIVAAGGM 624
AS+ITG VI GG
Sbjct: 243 KASFITGAVIPVDGGA 258
Score = 210 bits (537), Expect = 6e-63
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH-QKISGVV 68
+ GK+AVVTA S G+GFA A L+ GA +++ SR + A + ++ V
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ + D +LFE A GG DILV + P G +E WD+ + + +S
Sbjct: 65 GDIREPGDIDRLFEKARD-LGGADILVYSTGG-PRPGRFMELGVEDWDESYRLLARSAVW 122
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+ + + ++ G +VY+ S+ L P++ L ++ + ++G+ + +A +LA + V
Sbjct: 123 VGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTV 182
Query: 189 NCLAPGITKT 198
N + P + T
Sbjct: 183 NAVLPSLILT 192
Score = 79.1 bits (196), Expect = 2e-16
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
+ + GG DILV + +E WD+ + + +S+ + + M +
Sbjct: 75 RLFEKARDLGGADILVYSTGGPRPG-RFMELGVEDWDESYRLLARSAVWVGRRAAEQMVE 133
Query: 744 KKGGSIVYVSSIGG 757
K G +VY+ S+
Sbjct: 134 KGWGRMVYIGSVTL 147
Score = 57.6 bits (140), Expect = 3e-09
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI--- 695
++ + + G+ + +A +LAP + VN + P LI T DR+ ++ GI
Sbjct: 155 ALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILT---DRVRSLAEERARRSGITVE 211
Query: 696 DILVSNAAVNPA 707
+ L S A+ P
Sbjct: 212 EALKSMASRIPM 223
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 267 bits (685), Expect = 2e-84
Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 12/258 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG-HQKISGV 436
L+ VAVVT S GIG A + L GA+V +R + A L++ ++
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
VC V + E E+ G ILV+NA E + W + ++ S
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRV-STFAETTDEAWSEELQLKFFSVI 123
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+ LP + R +IV V+S+ P + A S ++ + L +++A + A + +R
Sbjct: 124 HPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVR 183
Query: 557 VNCLAPGITKTKFAAALYET----------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
VN + G+ ++ +E A +P+GRL P E + FL
Sbjct: 184 VNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLA 243
Query: 607 SDDASYITGEVIVAAGGM 624
S ++Y TG I +GG+
Sbjct: 244 SPLSAYTTGSHIDVSGGL 261
Score = 213 bits (544), Expect = 8e-64
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 2/207 (0%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG-HQKISGV 67
L+ VAVVT S GIG A + L GA+V +R + A L++ ++
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
VC V + E E+ G ILV+NA E + W + ++ S
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRV-STFAETTDEAWSEELQLKFFSVI 123
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ LP + R +IV V+S+ P + A S ++ + L +++A + A + +R
Sbjct: 124 HPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVR 183
Query: 188 VNCLAPGITKTKFAAAKKEVKKKETND 214
VN + G+ ++ + E +++ D
Sbjct: 184 VNGILIGLVESGQWRRRFEAREERELD 210
Score = 84.1 bits (209), Expect = 3e-18
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G ILV+NA + E ++ W + + S + LP + + +IV
Sbjct: 85 LGCASILVNNAGQGRVS-TFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVC 143
Query: 752 VSSIGG 757
V+S+
Sbjct: 144 VNSLLA 149
Score = 62.2 bits (152), Expect = 8e-11
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
A S ++ + L + +A + AP+ +RVN + GL+ +
Sbjct: 158 ATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVES 194
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 268 bits (687), Expect = 2e-84
Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 10/256 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
VA++T + GIG A A L+ +G +V R + V + + + G Q I +
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAI-ALE 83
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V+ + + KFG +DI+V+NA +N P+ + WD+ VN++ TFL
Sbjct: 84 ADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFL 143
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENI 555
+PY+++R GG+IV VSSI G F G AY+ +K A + + + +A +L +I
Sbjct: 144 TLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHI 203
Query: 556 RVNCLAPGITKTKFAAALYETEE-------AHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
RVN + PG +T + E + G+ +++ ++ FL S+
Sbjct: 204 RVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSE 263
Query: 609 DASYITGEVIVAAGGM 624
A ++TG + GG
Sbjct: 264 RARHVTGSPVWIDGGQ 279
Score = 215 bits (549), Expect = 3e-64
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 3/206 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
VA++T + GIG A A L+A+G +V R + V + + + G Q I +
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAI-ALE 83
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V+ + + KFG +DI+V+NA +N P+ + WD+ VN++ TFL
Sbjct: 84 ADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFL 143
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENI 186
+PY+++R GG+IV VSSI G F G AY+ +K A + + + +A +L +I
Sbjct: 144 TLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHI 203
Query: 187 RVNCLAPGITKTKFAAAKKEVKKKET 212
RVN + PG +T + K ++ET
Sbjct: 204 RVNAVCPGAIETNISDNTKLRHEEET 229
Score = 91.5 bits (228), Expect = 1e-20
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +DI+V+NA +N P+ + WD+ VNL+ +FL +PY++++ GG+IV
Sbjct: 103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVV 162
Query: 752 VSSIGGFKQF 761
VSSI G + F
Sbjct: 163 VSSINGTRTF 172
Score = 62.2 bits (152), Expect = 1e-10
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY+ +K A + + +A +L +IRVN + PG I T D
Sbjct: 179 AYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKL 223
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 266 bits (683), Expect = 3e-84
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 2/246 (0%)
Query: 381 GKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 440
+VA+VT +S G G AIA R G V + + T K+ V V
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNP--ATGPVVECPENVWDKIFEVNVKSTFLL 498
A + D ++FG ID+LV+NA + G + P +DK+ VNV+ FL
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
+ VLP++ + G IV ++S+ L F AY+ SK A+L LTK+VA D A IR N
Sbjct: 122 CRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCN 181
Query: 559 CLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI 618
+ PG+ +T + E + ++ +P + ++ V FL +DA+Y+ G +
Sbjct: 182 AVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAAL 241
Query: 619 VAAGGM 624
V G
Sbjct: 242 VMDGAY 247
Score = 202 bits (517), Expect = 3e-60
Identities = 65/189 (34%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Query: 12 GKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 71
+VA+VT +S G G AIA R A G V + + T K+ V V
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADV 61
Query: 72 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNP--ATGPVVECPENVWDKIFEVNVKSTFLL 129
A + D ++FG ID+LV+NA + G + P +DK+ VNV+ FL
Sbjct: 62 ADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLG 121
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
+ VLP++ + G IV ++S+ L F AY+ SK A+L LTK+VA D A IR N
Sbjct: 122 CRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCN 181
Query: 190 CLAPGITKT 198
+ PG+ +T
Sbjct: 182 AVCPGMIET 190
Score = 83.7 bits (208), Expect = 3e-18
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANE--PLVECSEVVWDKIFDVNLKSSFLLTQEV 737
+ IA +T + +G ID+LV+NA + +E L +DK+ VN++ FL + V
Sbjct: 68 NAAIA--ATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAV 125
Query: 738 LPYMRKKKGGSIVYVSSIGGF 758
LP+M + G IV ++S+
Sbjct: 126 LPHMLLQGAGVIVNIASVASL 146
Score = 59.8 bits (146), Expect = 5e-10
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ SK A+ LTK VA D A IR N + PG+I T
Sbjct: 154 AYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIET 190
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 267 bits (684), Expect = 4e-84
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 10/253 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L GKVA++T + G G +AKR + GA VVI R ++ + + G + V
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAAL-AVA 61
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
++K+ D E A KFG +DILV+NA + +D+I VNV+ +L
Sbjct: 62 ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 498 LTQEVLPYIRKRNGGS----IVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
+T +++P+ ++ I+ V+S G P L Y+ +K ++ +TKA+A +LA
Sbjct: 122 MTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPA 181
Query: 554 NIRVNCLAPGITKTKFAAALY--ETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
IRV L P +T ++EE + ++PMGRL PD++ AFLCS AS
Sbjct: 182 KIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQAS 241
Query: 612 YITGEVIVAAGGM 624
ITG + GG
Sbjct: 242 MITGVALDVDGGR 254
Score = 206 bits (526), Expect = 3e-61
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L GKVA++T + G G +AKR + GA VVI R ++ + + G + V
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAAL-AVA 61
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
++K+ D E A KFG +DILV+NA + +D+I VNV+ +L
Sbjct: 62 ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 129 LTQEVLPYIRKRNGGS----IVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
+T +++P+ ++ I+ V+S G P L Y+ +K ++ +TKA+A +LA
Sbjct: 122 MTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVVSVTKALAIELAPA 181
Query: 185 NIRVNCLAPGITKT 198
IRV L P +T
Sbjct: 182 KIRVVALNPVAGET 195
Score = 84.9 bits (211), Expect = 2e-18
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D + + +G +DILV+NA + + +D+I VN++ +L+T +++P
Sbjct: 71 DAAVE--AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIP 128
Query: 740 YMRKKKGGS----IVYVSSIGGF 758
+ ++ I+ V+S G
Sbjct: 129 HFKENGAKGQECVILNVASTGAG 151
Score = 60.2 bits (147), Expect = 3e-10
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y+ +K + +TK +A +LAP IRV L P T +
Sbjct: 159 WYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMG 203
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 267 bits (685), Expect = 4e-84
Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 9/251 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L +V +VT GIG A A+ + GA VV++ E + + G + GV
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSKAF-GVR 79
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V+ +D + + E K+G +D+LV+NA TG VV PE WD+I VNVK FL
Sbjct: 80 VDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGT-TGNVVTIPEETWDRIMSVNVKGIFL 138
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
++ V+P +R+ GGSI+ +S + AY SK A+ LT+A+A D A E IRV
Sbjct: 139 CSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRV 198
Query: 558 NCLAPGITKT----KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
N +APG + K A + + + M R+ +E+ + FL SD + +
Sbjct: 199 NAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFA 258
Query: 614 TGEVIVAAGGM 624
TG ++ GG
Sbjct: 259 TGSILTVDGGS 269
Score = 208 bits (533), Expect = 4e-62
Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L +V +VT GIG A A+ + GA VV++ E + + G + GV
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GSKAF-GVR 79
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V+ +D + + E K+G +D+LV+NA TG VV PE WD+I VNVK FL
Sbjct: 80 VDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGT-TGNVVTIPEETWDRIMSVNVKGIFL 138
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
++ V+P +R+ GGSI+ +S + AY SK A+ LT+A+A D A E IRV
Sbjct: 139 CSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRV 198
Query: 189 NCLAPGITKT 198
N +APG +
Sbjct: 199 NAVAPGTIDS 208
Score = 89.1 bits (222), Expect = 9e-20
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ M+ T +G +D+LV+NA +V E WD+I VN+K FL ++ V+P
Sbjct: 89 ESMVE--KTTAKWGRVDVLVNNAGFGTTG-NVVTIPEETWDRIMSVNVKGIFLCSKYVIP 145
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
MR+ GGSI+ +S
Sbjct: 146 VMRRNGGGSIINTTSYTATS 165
Score = 62.2 bits (152), Expect = 9e-11
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY SK A+ LT+ +A D A E IRVN +APG I + + ++ A
Sbjct: 172 AYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFA 216
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 267 bits (685), Expect = 5e-84
Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 4/251 (1%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
SRL GK+A+VT +S GIG A A + EGA VV+++R + + + + + G + +
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAA-AL 62
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V + + L E A ++FGG+D +NA A G + W + + N+ S F
Sbjct: 63 AGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAF 122
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
L + +P I GGS+ + SS G A F + Y+ SK L+GL +A+A +L + I
Sbjct: 123 LAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGI 182
Query: 556 RVNCLAPGITKTKFAAALYE--TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
RVN L PG T T A E + R+A P+E+ +L SD AS++
Sbjct: 183 RVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKRIARPEEIAEAALYLASDGASFV 242
Query: 614 TGEVIVAAGGM 624
TG ++A GG
Sbjct: 243 TGAALLADGGA 253
Score = 210 bits (538), Expect = 7e-63
Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 2/192 (1%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
SRL GK+A+VT +S GIG A A + EGA VV+++R + + + + + G + +
Sbjct: 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAA-AL 62
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V + + L E A ++FGG+D +NA A G + W + + N+ S F
Sbjct: 63 AGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAF 122
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
L + +P I GGS+ + SS G A F + Y+ SK L+GL +A+A +L + I
Sbjct: 123 LAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGI 182
Query: 187 RVNCLAPGITKT 198
RVN L PG T T
Sbjct: 183 RVNALLPGGTDT 194
Score = 86.1 bits (214), Expect = 9e-19
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ ++ + +GG+D +NA A + S W + D NL S+FL + +P
Sbjct: 73 EALVE--LAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVP 130
Query: 740 YMRKKKGGSIVYVSSIGGF 758
+ GGS+ + SS G
Sbjct: 131 AIAALGGGSLTFTSSFVGH 149
Score = 61.8 bits (151), Expect = 2e-10
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y+ SK L GL + +A +L IRVN L PG T +
Sbjct: 157 APYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLP 202
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 265 bits (679), Expect = 2e-83
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 15/260 (5%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ GKV +VT + IG A A RL+ EG ++ + + KA +++++G + V
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYV 62
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
C V +E + + FG ID L +NA A PV + P + + ++ +NV F
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
+ + V + +N G IV +S+ G+ + AY SK A++ LT+ A DLA NIRV
Sbjct: 123 VLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRV 182
Query: 558 NCLAPGITKTKFAAALYE--------------TEEAHEIAVSNVPMGRLAVPDEMGGIVA 603
N ++PG F + + + +VPM R +E+ G+VA
Sbjct: 183 NAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVA 242
Query: 604 FLCSDDASYITGEVIVAAGG 623
FL DD+S++TG + AGG
Sbjct: 243 FLLGDDSSFMTGVNLPIAGG 262
Score = 214 bits (547), Expect = 3e-64
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 1/190 (0%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ GKV +VT + IG A A RL+ EG ++ + + KA +++++G + V
Sbjct: 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV-EARSYV 62
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C V +E + + FG ID L +NA A PV + P + + ++ +NV F
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+ + V + +N G IV +S+ G+ + AY SK A++ LT+ A DLA NIRV
Sbjct: 123 VLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRV 182
Query: 189 NCLAPGITKT 198
N ++PG
Sbjct: 183 NAISPGYMGP 192
Score = 88.0 bits (219), Expect = 2e-19
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ S + +G ID L +NA A P+ + + ++ +N+ +F + + V
Sbjct: 72 IGTVD--SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSR 129
Query: 740 YMRKKKGGSIVYVSSIGG 757
M + G IV +S+ G
Sbjct: 130 QMITQNYGRIVNTASMAG 147
Score = 58.7 bits (143), Expect = 1e-09
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY SK A+ LT+ A DLAP NIRVN ++PG +
Sbjct: 156 AYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGP 192
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 264 bits (678), Expect = 2e-83
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 5/259 (1%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
MS + L VA+VT ++ GIG AIA + GASVV++ K +++ G
Sbjct: 2 MSYE-SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG 60
Query: 430 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 489
+ I G+ C+V ++ R+ + + A +FG I +LV+NA + P + ++ F+
Sbjct: 61 GKAI-GLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPK--PFDMPMSDFEWAFK 117
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
+N+ S F L+Q P+++K GG+I+ +SS+ G + +Y SK A+ LT+ +A D
Sbjct: 118 LNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFD 177
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
+ IRVN +APG KT A + T E + + P+GRL ++ FLCS
Sbjct: 178 VGPMGIRVNAIAPGAIKTDALATVL-TPEIERAMLKHTPLGRLGEAQDIANAALFLCSPA 236
Query: 610 ASYITGEVIVAAGGMQSRL 628
A++I+G+V+ +GG L
Sbjct: 237 AAWISGQVLTVSGGGVQEL 255
Score = 206 bits (526), Expect = 2e-61
Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 4/211 (1%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
MS + L VA+VT ++ GIG AIA + GASVV++ K +++ G
Sbjct: 2 MSYE-SPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG 60
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
+ I G+ C+V ++ R+ + + A +FG I +LV+NA + P + ++ F+
Sbjct: 61 GKAI-GLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPK--PFDMPMSDFEWAFK 117
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
+N+ S F L+Q P+++K GG+I+ +SS+ G + +Y SK A+ LT+ +A D
Sbjct: 118 LNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFD 177
Query: 181 LASENIRVNCLAPGITKTKFAAAKKEVKKKE 211
+ IRVN +APG KT A + +
Sbjct: 178 VGPMGIRVNAIAPGAIKTDALATVLTPEIER 208
Score = 83.3 bits (207), Expect = 5e-18
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G I +LV+NA + ++ F +NL S F L+Q P+M+K GG+I+
Sbjct: 87 FGKITVLVNNAGGGGPK--PFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILN 144
Query: 752 VSSIGG 757
+SS+ G
Sbjct: 145 ISSMAG 150
Score = 60.2 bits (147), Expect = 4e-10
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
+Y SK A+ LT+ +A D+ P IRVN +APG I+T +A + T ++
Sbjct: 159 SYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTD----ALATVLTPEI 206
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 264 bits (678), Expect = 3e-83
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 4/249 (1%)
Query: 378 RLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L GKV +VT A+ GIG A+R EGA VVIS E + + + L G ++ V
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAV 78
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
VC V E L +K G +D+LV+NA + PVV+ + WD++ V + S
Sbjct: 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGG-QTPVVDMTDEEWDRVLNVTLTSVM 137
Query: 497 LLTQEVLPYIRK-RNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
T+ L Y R +GG IV +S+ G Y+ +K ++ LT+ A + +
Sbjct: 138 RATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGV 197
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
R+N ++P I + KF + E + S+ GR A P E+ +AFL SD +SY+TG
Sbjct: 198 RINAVSPSIARHKFLEKT-SSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTG 256
Query: 616 EVIVAAGGM 624
EV+ +
Sbjct: 257 EVVSVSSQR 265
Score = 203 bits (518), Expect = 4e-60
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 5/213 (2%)
Query: 9 RLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GKV +VT A+ GIG A+R EGA VVIS E + + + L G ++ V
Sbjct: 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAV 78
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
VC V E L +K G +D+LV+NA + PVV+ + WD++ V + S
Sbjct: 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGG-QTPVVDMTDEEWDRVLNVTLTSVM 137
Query: 128 LLTQEVLPYIRK-RNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
T+ L Y R +GG IV +S+ G Y+ +K ++ LT+ A + +
Sbjct: 138 RATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGV 197
Query: 187 RVNCLAPGITKTKFAAAKK--EVKKKETNDEPI 217
R+N ++P I + KF E+ + +DE
Sbjct: 198 RINAVSPSIARHKFLEKTSSSELLDRLASDEAF 230
Score = 78.3 bits (194), Expect = 3e-16
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D +I T + G +D+LV+NA + P+V+ ++ WD++ +V L S T+ L
Sbjct: 89 DALIT--QTVEKAGRLDVLVNNAGLGGQT-PVVDMTDEEWDRVLNVTLTSVMRATRAALR 145
Query: 740 YMRK-KKGGSIVYVSSIGG 757
Y R GG IV +S+ G
Sbjct: 146 YFRGVDHGGVIVNNASVLG 164
Score = 58.3 bits (142), Expect = 2e-09
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ +K + LT+ A + +R+N ++P + R K + S+ +L
Sbjct: 173 HYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHK----FLEKTSSSEL 220
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 264 bits (677), Expect = 6e-83
Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 10/263 (3%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
++N LAGKVA+VT + GIG A+A+RL+ EG V+ + + A + G
Sbjct: 19 PGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GC 75
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 490
V+ ++ + + FGG+D LV+NA V +++ +D++ +
Sbjct: 76 GAA-ACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVH-LASLIDTTVEDFDRVIAI 133
Query: 491 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
N++ +L T+ P + +R GG+IV +SS+ G GAY +SK ++ L++ A +L
Sbjct: 134 NLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAEL 193
Query: 551 ASENIRVNCLAPGITKTKFAAALYE-----TEEAHEIAVSNVPMGRLAVPDEMGGIVAFL 605
S IR N L P T ++ GR+A P+EM GIV FL
Sbjct: 194 RSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFL 253
Query: 606 CSDDASYITGEVIVAAGGMQSRL 628
SDDAS ITG +A GG + L
Sbjct: 254 LSDDASMITGTTQIADGGTIAAL 276
Score = 205 bits (525), Expect = 5e-61
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 5/197 (2%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
++N L GKVA+VT + GIG A+A+RL+ EG V+ + + A + G
Sbjct: 19 PGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GC 75
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 121
V+ ++ + + FGG+D LV+NA V +++ +D++ +
Sbjct: 76 GAA-ACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVH-LASLIDTTVEDFDRVIAI 133
Query: 122 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
N++ +L T+ P + +R GG+IV +SS+ G GAY +SK ++ L++ A +L
Sbjct: 134 NLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAEL 193
Query: 182 ASENIRVNCLAPGITKT 198
S IR N L P T
Sbjct: 194 RSSGIRSNTLLPAFVDT 210
Score = 85.3 bits (212), Expect = 2e-18
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
M+ + +GG+D LV+NA V L++ + +D++ +NL+ ++L T+ P
Sbjct: 91 IAMVD--ACVAAFGGVDKLVANAGVVHLA-SLIDTTVEDFDRVIAINLRGAWLCTKHAAP 147
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M ++ GG+IV +SS+ G
Sbjct: 148 RMIERGGGAIVNLSSLAGQ 166
Score = 62.2 bits (152), Expect = 9e-11
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAM 685
AY +SK + L+++ A +L IR N L P + T +AM
Sbjct: 174 AYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAM 219
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 263 bits (674), Expect = 9e-83
Identities = 71/258 (27%), Positives = 115/258 (44%), Gaps = 15/258 (5%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
RL GK A++T S+ GIG A A+ EGA+V I+ +A + G V
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAY-AV 59
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V +++ + GG+DILV+NAA+ P+VE ++K+F +NV T
Sbjct: 60 QMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFD-LAPIVEITRESYEKLFAINVAGTL 118
Query: 497 LLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
Q + + GG I+ ++S G L+ Y +K A++ LT++ DL I
Sbjct: 119 FTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRI 178
Query: 556 RVNCLAPGITKTKFAAALYE---------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
VN +APG+ + + E + VP GR+ +++ G+ FL
Sbjct: 179 NVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLA 238
Query: 607 SDDASYITGEVIVAAGGM 624
S ++ YI + GG
Sbjct: 239 SAESDYIVSQTYNVDGGN 256
Score = 206 bits (528), Expect = 1e-61
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
RL GK A++T S+ GIG A A+ EGA+V I+ +A + G V
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---GPAAY-AV 59
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V +++ + GG+DILV+NAA+ P+VE ++K+F +NV T
Sbjct: 60 QMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFD-LAPIVEITRESYEKLFAINVAGTL 118
Query: 128 LLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
Q + + GG I+ ++S G L+ Y +K A++ LT++ DL I
Sbjct: 119 FTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRI 178
Query: 187 RVNCLAPGITKT 198
VN +APG+
Sbjct: 179 NVNAIAPGVVDG 190
Score = 82.6 bits (205), Expect = 1e-17
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D IA +T + GG+DILV+NAA+ P+VE + ++K+F +N+ + Q
Sbjct: 70 DAAIA--ATVEHAGGLDILVNNAALFDLA-PIVEITRESYEKLFAINVAGTLFTLQAAAR 126
Query: 740 YMRKK-KGGSIVYVSSIGGFK 759
M + +GG I+ ++S G +
Sbjct: 127 QMIAQGRGGKIINMASQAGRR 147
Score = 59.8 bits (146), Expect = 5e-10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLS 687
Y +K A+ LT+ DL I VN +APG++ + D + A+ +
Sbjct: 153 AIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFA 201
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 262 bits (672), Expect = 2e-82
Identities = 81/249 (32%), Positives = 134/249 (53%), Gaps = 4/249 (1%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGV 436
L GKV V+T SS G+G ++A R +TE A VV++ KE N +E ++K G + I V
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAI-AV 62
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V + D L + A K+FG +D++++NA + E + W+K+ + N+ F
Sbjct: 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAF 121
Query: 497 LLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
L ++E + Y + G+++ +SS+ P+ L Y+ SK + +T+ +A + A + I
Sbjct: 122 LGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 181
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
RVN + PG T A + E S +PMG + P+E+ + A+L S +ASY+TG
Sbjct: 182 RVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTG 241
Query: 616 EVIVAAGGM 624
+ A GGM
Sbjct: 242 ITLFADGGM 250
Score = 195 bits (499), Expect = 2e-57
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 4/192 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGV 67
L GKV V+T SS G+G ++A R + E A VV++ KE N +E ++K G + I V
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAI-AV 62
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V + D L + A K+FG +D++++NA + E + W+K+ + N+ F
Sbjct: 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAF 121
Query: 128 LLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
L ++E + Y + G+++ +SS+ P+ L Y+ SK + +T+ +A + A + I
Sbjct: 122 LGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGI 181
Query: 187 RVNCLAPGITKT 198
RVN + PG T
Sbjct: 182 RVNNIGPGAINT 193
Score = 79.5 bits (197), Expect = 1e-16
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ S K +G +D++++NA + E S W+K+ D NL +FL ++E +
Sbjct: 73 INLVQ--SAIKEFGKLDVMINNAGLENPV-SSHEMSLSDWNKVIDTNLTGAFLGSREAIK 129
Query: 740 YMRKKK-GGSIVYVSSIGG 757
Y + G+++ +SS+
Sbjct: 130 YFVENDIKGTVINMSSVHE 148
Score = 57.5 bits (140), Expect = 3e-09
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK + +T+ +A + AP+ IRVN + PG I T
Sbjct: 157 HYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINT 193
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 262 bits (673), Expect = 2e-82
Identities = 76/262 (29%), Positives = 132/262 (50%), Gaps = 15/262 (5%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ--KIS 434
R + K ++T SS+GIG A + EGA+V I+ R + + + + K G +++
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVN 61
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV---NPATGPVVECPENVWDKIFEVN 491
VV V ++ + ++ K+FG ID+LV+NA + + +++ K ++N
Sbjct: 62 SVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLN 121
Query: 492 VKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
+++ +T++V P++ G IV VSSI G Y+++K AL T++ A DL
Sbjct: 122 LQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 180
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEA-------HEIAVSNVPMGRLAVPDEMGGIVA 603
A IRVN ++PG+ +T F A+ ++A +P+G P+ + I+
Sbjct: 181 AKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIIL 240
Query: 604 FLCSDDAS-YITGEVIVAAGGM 624
FL + S YI G+ IVA GG
Sbjct: 241 FLADRNLSFYILGQSIVADGGT 262
Score = 209 bits (535), Expect = 2e-62
Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 7/202 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--KIS 65
R + K ++T SS+GIG A + EGA+V I+ R + + + + K G +++
Sbjct: 2 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVN 61
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV---NPATGPVVECPENVWDKIFEVN 122
VV V ++ + ++ K+FG ID+LV+NA + + +++ K ++N
Sbjct: 62 SVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLN 121
Query: 123 VKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
+++ +T++V P++ G IV VSSI G Y+++K AL T++ A DL
Sbjct: 122 LQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDL 180
Query: 182 ASENIRVNCLAPGITKTKFAAA 203
A IRVN ++PG+ +T F A
Sbjct: 181 AKFGIRVNSVSPGMVETGFTNA 202
Score = 79.9 bits (198), Expect = 1e-16
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAV---NPANEPLVECSEVVWDKIFDVNLKSSFLLTQE 736
D++I ST K +G ID+LV+NA + + ++ K +NL++ +T++
Sbjct: 74 DQIIN--STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKK 131
Query: 737 VLPYMRKKKGGSIVYVSSI 755
V P++ G IV VSSI
Sbjct: 132 VKPHL-VASKGEIVNVSSI 149
Score = 63.4 bits (155), Expect = 5e-11
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
Y+++K AL T+ A DLA IRVN ++PG++ T F + M
Sbjct: 161 YYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAM 203
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 262 bits (672), Expect = 2e-82
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 12/253 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
RL K+AV+T ++ GIG A AKR EGA V I+ R++ ++ A+ + G + G+
Sbjct: 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GGGAV-GI 80
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
A + +L+E + + G ID+L NA P+ E E +D F+ NVK
Sbjct: 81 QADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSM-LPLGEVTEEQYDDTFDRNVKGVL 139
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
Q+ LP + + G S+V S G Y+ SK AL + DL IR
Sbjct: 140 FTVQKALPLLAR--GSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIR 197
Query: 557 VNCLAPGITKTKFAAALY-----ETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
+N L+PG T+T L + + + VPMGR+ +E+ FL SDD+S
Sbjct: 198 INTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSS 257
Query: 612 YITGEVIVAAGGM 624
++TG + GG
Sbjct: 258 FVTGAELFVDGGS 270
Score = 206 bits (526), Expect = 3e-61
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 7/191 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
RL K+AV+T ++ GIG A AKR AEGA V I+ R++ ++ A+ + G + G+
Sbjct: 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GGGAV-GI 80
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
A + +L+E + + G ID+L NA P+ E E +D F+ NVK
Sbjct: 81 QADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSM-LPLGEVTEEQYDDTFDRNVKGVL 139
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
Q+ LP + + G S+V S G Y+ SK AL + DL IR
Sbjct: 140 FTVQKALPLLAR--GSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIR 197
Query: 188 VNCLAPGITKT 198
+N L+PG T+T
Sbjct: 198 INTLSPGPTET 208
Score = 81.4 bits (202), Expect = 3e-17
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
DR+ G ID+L NA PL E +E +D FD N+K Q+ LP
Sbjct: 91 DRLYE--KVKAEAGRIDVLFVNAGGGSML-PLGEVTEEQYDDTFDRNVKGVLFTVQKALP 147
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+ +G S+V S G
Sbjct: 148 LLA--RGSSVVLTGSTAGST 165
Score = 57.9 bits (141), Expect = 2e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK AL + DL IR+N L+PG T
Sbjct: 171 SVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTET 208
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 262 bits (671), Expect = 2e-82
Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 3/247 (1%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 437
K A+VT SS G+G A A RL+ G ++VI+ +R + + E ++K G + + V
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVL-VVK 60
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+V + +++F+ ++ FG +D+ V+NAA PV+E E WD +N K+
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAASG-VLRPVMELEETHWDWTMNINAKALLF 119
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
QE + K GG IV +SS+G + + VSK AL LT+ +A +L+ + I V
Sbjct: 120 CAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIV 179
Query: 558 NCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEV 617
N ++ G T E+ E A N P GR+ +M V FL S A I G+
Sbjct: 180 NAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQT 239
Query: 618 IVAAGGM 624
I+ GG
Sbjct: 240 IIVDGGR 246
Score = 196 bits (501), Expect = 7e-58
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 68
K A+VT SS G+G A A RL+ G ++VI+ +R + + E ++K G + + V
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVL-VVK 60
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+V + +++F+ ++ FG +D+ V+NAA PV+E E WD +N K+
Sbjct: 61 ANVGQPAKIKEMFQQIDETFGRLDVFVNNAASG-VLRPVMELEETHWDWTMNINAKALLF 119
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
QE + K GG IV +SS+G + + VSK AL LT+ +A +L+ + I V
Sbjct: 120 CAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIV 179
Query: 189 NCLAPGITKT 198
N ++ G T
Sbjct: 180 NAVSGGAIDT 189
Score = 87.6 bits (218), Expect = 2e-19
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
M D+ +G +D+ V+NAA P++E E WD ++N K+ QE
Sbjct: 70 KEMFQ--QIDETFGRLDVFVNNAASGVLR-PVMELEETHWDWTMNINAKALLFCAQEAAK 126
Query: 740 YMRKKKGGSIVYVSSIGG 757
M K GG IV +SS+G
Sbjct: 127 LMEKNGGGHIVSISSLGS 144
Score = 57.9 bits (141), Expect = 2e-09
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
VSK AL LT+ +A +L+P+ I VN ++ G I T
Sbjct: 152 TTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDT 189
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 262 bits (673), Expect = 2e-82
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 15/262 (5%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG--HQKIS 434
+R A KVA++T SS+GIG A A + EGA V I+ R + + + + G Q ++
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNA---AVNPATGPVVECPENVWDKIFEVN 491
VV V + ++ KFG +DILV+NA + + +D +N
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 121
Query: 492 VKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
++S LT++ +P++ G IV +SSI GL YS++K A+ T+ A DL
Sbjct: 122 LRSVIALTKKAVPHLSST-KGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAH-------EIAVSNVPMGRLAVPDEMGGIVA 603
IRVN ++PG+ T F +A+ EE VP G + P ++ ++A
Sbjct: 181 IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 240
Query: 604 FLCSDD-ASYITGEVIVAAGGM 624
FL +SYI G +V GG
Sbjct: 241 FLADRKTSSYIIGHQLVVDGGS 262
Score = 211 bits (540), Expect = 4e-63
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 7/202 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG--HQKIS 65
+R KVA++T SS+GIG A A + EGA V I+ R + + + + G Q ++
Sbjct: 2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 61
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNA---AVNPATGPVVECPENVWDKIFEVN 122
VV V + ++ KFG +DILV+NA + + +D +N
Sbjct: 62 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 121
Query: 123 VKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
++S LT++ +P++ G IV +SSI GL YS++K A+ T+ A DL
Sbjct: 122 LRSVIALTKKAVPHLSST-KGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDL 180
Query: 182 ASENIRVNCLAPGITKTKFAAA 203
IRVN ++PG+ T F +A
Sbjct: 181 IQHGIRVNSISPGLVATGFGSA 202
Score = 81.9 bits (203), Expect = 2e-17
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNA---AVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQE 736
D +++ +T +G +DILV+NA + ++ S +D ++NL+S LT++
Sbjct: 74 DEILS--TTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKK 131
Query: 737 VLPYMRKKKGGSIVYVSSIGG 757
+P++ G IV +SSI
Sbjct: 132 AVPHL-SSTKGEIVNISSIAS 151
Score = 62.6 bits (153), Expect = 7e-11
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
YS++K A+ T+ A DL IRVN ++PGL+ T FG M
Sbjct: 161 YYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAM 203
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 261 bits (670), Expect = 4e-82
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 18/253 (7%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
GKVA+VT ++ GIG A+ L GA V ++ R + + + +
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL------------HL 71
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+ + L G +DI+V+NA V G + E + W VNV++ F
Sbjct: 72 PGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVIS-RGRITETTDADWSLSLGVNVEAPF 130
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+ + +P + GG+IV V+S GL P Y ++K AL LT+ + D A + IR
Sbjct: 131 RICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIR 190
Query: 557 VNCLAPGITKT-----KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
+N + P T FA ++ + A VP+GR+A P+++ +V FL SD A
Sbjct: 191 INAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAAR 250
Query: 612 YITGEVIVAAGGM 624
Y+ G ++ GG
Sbjct: 251 YLCGSLVEVNGGK 263
Score = 203 bits (518), Expect = 3e-60
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 13/191 (6%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
GKVA+VT ++ GIG A+ L A GA V ++ R + + + +
Sbjct: 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL------------HL 71
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ + L G +DI+V+NA V G + E + W VNV++ F
Sbjct: 72 PGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVIS-RGRITETTDADWSLSLGVNVEAPF 130
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ + +P + GG+IV V+S GL P Y ++K AL LT+ + D A + IR
Sbjct: 131 RICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIR 190
Query: 188 VNCLAPGITKT 198
+N + P T
Sbjct: 191 INAVCPNEVNT 201
Score = 87.6 bits (218), Expect = 3e-19
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D + + G +DI+V+NA V + E ++ W VN+++ F + + +P
Sbjct: 82 DGLPG--AVAAGLGRLDIVVNNAGVISRG-RITETTDADWSLSLGVNVEAPFRICRAAIP 138
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M GG+IV V+S G
Sbjct: 139 LMAAAGGGAIVNVASCWGL 157
Score = 63.7 bits (156), Expect = 3e-11
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTD 689
Y ++K AL LT+ + D AP+ IR+N + P + T A D
Sbjct: 165 LYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFD 214
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 261 bits (669), Expect = 5e-82
Identities = 85/257 (33%), Positives = 124/257 (48%), Gaps = 15/257 (5%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L+G+ A+VT S GIG AIA+ L GA+V I+ V L+ G V
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGF----AVE 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V K+ + A GG D+L +NA V+ P V+ + WD F+VN + FL
Sbjct: 65 VDVTKRASVDAAMQKAIDALGGFDLLCANAGVST-MRPAVDITDEEWDFNFDVNARGVFL 123
Query: 498 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
Q + + G IV +S+ LL YS SK A+ G T+A+A+++A +NIR
Sbjct: 124 ANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIR 183
Query: 557 VNCLAPGITKT---------KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
VNC+ PG KT + E VS P+GR+ P+++ +V FL S
Sbjct: 184 VNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLAS 243
Query: 608 DDASYITGEVIVAAGGM 624
D A ++TG+ I GG+
Sbjct: 244 DAARFMTGQGINVTGGV 260
Score = 206 bits (527), Expect = 2e-61
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 6/191 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L+G+ A+VT S GIG AIA+ L GA+V I+ V L+ G V
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGF----AVE 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V K+ + A GG D+L +NA V+ P V+ + WD F+VN + FL
Sbjct: 65 VDVTKRASVDAAMQKAIDALGGFDLLCANAGVST-MRPAVDITDEEWDFNFDVNARGVFL 123
Query: 129 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
Q + + G IV +S+ LL YS SK A+ G T+A+A+++A +NIR
Sbjct: 124 ANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIR 183
Query: 188 VNCLAPGITKT 198
VNC+ PG KT
Sbjct: 184 VNCVCPGFVKT 194
Score = 80.7 bits (200), Expect = 6e-17
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D + GG D+L +NA V+ P V+ ++ WD FDVN + FL Q
Sbjct: 74 DAAMQ--KAIDALGGFDLLCANAGVSTMR-PAVDITDEEWDFNFDVNARGVFLANQIACR 130
Query: 740 YMRK-KKGGSIVYVSSIGG 757
+ G IV +S+
Sbjct: 131 HFLASNTKGVIVNTASLAA 149
Score = 58.3 bits (142), Expect = 2e-09
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK A+FG T+ +A ++AP+NIRVNC+ PG ++T
Sbjct: 157 AHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKT 194
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 262 bits (671), Expect = 7e-82
Identities = 84/260 (32%), Positives = 128/260 (49%), Gaps = 13/260 (5%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ--KIS 434
+R +GK ++T SS+GIG + A + EGA V I+ R E + + + + K G KI+
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKIN 81
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVN-PATGPVVECPENVWDKIFEVNVK 493
VV V + + + KFG IDILV+NA N + P ++ K F++N +
Sbjct: 82 AVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQ 141
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS 552
+ +TQ+ ++ K G IV VSSI G Y+ +K AL T+ A DL
Sbjct: 142 AVIEMTQKTKEHLIKT-KGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQ 200
Query: 553 ENIRVNCLAPGITKTKFAAALYETEEAHEI-------AVSNVPMGRLAVPDEMGGIVAFL 605
+RVN ++PG T F A+ E A + +P+G P+E+ I+ FL
Sbjct: 201 HGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFL 260
Query: 606 CSDD-ASYITGEVIVAAGGM 624
+ +SYI G+ IVA GG
Sbjct: 261 ADRNLSSYIIGQSIVADGGS 280
Score = 210 bits (536), Expect = 2e-62
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 5/200 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ--KIS 65
+R +GK ++T SS+GIG + A + EGA V I+ R E + + + + K G KI+
Sbjct: 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKIN 81
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVN-PATGPVVECPENVWDKIFEVNVK 124
VV V + + + KFG IDILV+NA N + P ++ K F++N +
Sbjct: 82 AVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQ 141
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS 183
+ +TQ+ ++ K G IV VSSI G Y+ +K AL T+ A DL
Sbjct: 142 AVIEMTQKTKEHLIKT-KGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQ 200
Query: 184 ENIRVNCLAPGITKTKFAAA 203
+RVN ++PG T F A
Sbjct: 201 HGVRVNSVSPGAVATGFMGA 220
Score = 81.5 bits (202), Expect = 5e-17
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANE-PLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
D +I +T +G IDILV+NA N A+ + ++ K F +N ++ +TQ+
Sbjct: 94 DDIIN--TTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTK 151
Query: 739 PYMRKKKGGSIVYVSSI 755
++ K G IV VSSI
Sbjct: 152 EHL-IKTKGEIVNVSSI 167
Score = 63.0 bits (154), Expect = 7e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
Y+ +K AL T+ A DL +RVN ++PG + T F M
Sbjct: 179 YYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAM 221
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 260 bits (668), Expect = 9e-82
Identities = 76/248 (30%), Positives = 128/248 (51%), Gaps = 6/248 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L KVA++T + GIG ++ L+ GA VV++ E+++ A ++ G + V
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---GRGAV-HHV 63
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV-NPATGPVVECPENVWDKIFEVNVKSTF 496
+ + + L + FG +DI+ +NAA +PA V + +VWD F VN + T
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM 123
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+ + +P + GG+IV +SS A + + AY+ +K A+ LT+ VA +R
Sbjct: 124 LMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVR 183
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N +APG+ +T + +I ++ GR+ P E+ +V FL SD A++ITG+
Sbjct: 184 CNAIAPGLVRTPRLEVGLP-QPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQ 242
Query: 617 VIVAAGGM 624
VI A G+
Sbjct: 243 VIAADSGL 250
Score = 203 bits (518), Expect = 4e-60
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 5/191 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L KVA++T + GIG ++ L+ GA VV++ E+++ A ++ G + V
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---GRGAV-HHV 63
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV-NPATGPVVECPENVWDKIFEVNVKSTF 127
+ + + L + FG +DI+ +NAA +PA V + +VWD F VN + T
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM 123
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+ + +P + GG+IV +SS A + + AY+ +K A+ LT+ VA +R
Sbjct: 124 LMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVR 183
Query: 188 VNCLAPGITKT 198
N +APG+ +T
Sbjct: 184 CNAIAPGLVRT 194
Score = 85.7 bits (213), Expect = 1e-18
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAV-NPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
+I T +G +DI+ +NAA +PA+ + + + VWD F VN + + L+ + +
Sbjct: 73 RALID--FTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAI 130
Query: 739 PYMRKKKGGSIVYVSSIGGF 758
P + GG+IV +SS
Sbjct: 131 PRLISAGGGAIVNISSATAH 150
Score = 61.4 bits (150), Expect = 2e-10
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ +K A+ LT+ VA +R N +APGL+RT
Sbjct: 158 AYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRT 194
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 258 bits (663), Expect = 3e-81
Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 13/254 (5%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
+ + L G+V +VT ++ GIG A A+ + GASVV+ R E+++ + + ++ G
Sbjct: 3 FDYSAHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG 62
Query: 430 HQ--KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 487
I + A + ++L E +FG +D L+ NA++ P+ + P+ + ++
Sbjct: 63 QPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQV 122
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
VNV +TF+LT+ +LP +++ SI + SS G GAY VSK A GL + +A
Sbjct: 123 MHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLA 182
Query: 548 QDL-ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
+L +R N + PG T+T A Y E P+ A P+++ + +L
Sbjct: 183 DELEGVTAVRANSINPGATRTGMRAQAYPDE---------NPLNNPA-PEDIMPVYLYLM 232
Query: 607 SDDASYITGEVIVA 620
D++ I G+ + A
Sbjct: 233 GPDSTGINGQALNA 246
Score = 221 bits (566), Expect = 3e-67
Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
+ + L G+V +VT ++ GIG A A+ +A GASVV+ R E+++ + + ++ G
Sbjct: 3 FDYSAHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG 62
Query: 61 HQ--KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
I + A + ++L E +FG +D L+ NA++ P+ + P+ + ++
Sbjct: 63 QPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQV 122
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
VNV +TF+LT+ +LP +++ SI + SS G GAY VSK A GL + +A
Sbjct: 123 MHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFATEGLMQTLA 182
Query: 179 QDL-ASENIRVNCLAPGITKTKFAAA 203
+L +R N + PG T+T A
Sbjct: 183 DELEGVTAVRANSINPGATRTGMRAQ 208
Score = 91.4 bits (228), Expect = 8e-21
Identities = 20/68 (29%), Positives = 41/68 (60%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +D L+ NA++ PL + + + ++ VN+ ++F+LT+ +LP +++ + SI +
Sbjct: 92 FGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAF 151
Query: 752 VSSIGGFK 759
SS G K
Sbjct: 152 TSSSVGRK 159
Score = 64.9 bits (159), Expect = 9e-12
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDL-APENIRVNCLAPGLIRTKF 678
GAY VSK A GL + +A++L +R N + PG RT
Sbjct: 163 NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM 205
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 258 bits (662), Expect = 5e-81
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 12/252 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
AGK +VT + GIG AIA+ + EGA V + + + E + G
Sbjct: 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP----EGKEVAEAIGGA---FF 54
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+ + +R + E A G +D+LV+NAA+ G + W ++ EVN+ +
Sbjct: 55 QVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAA-PGSALTVRLPEWRRVLEVNLTAPM 113
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+ +RK GG+IV V+S+ GL + AY+ SK L+ LT+++A DLA IR
Sbjct: 114 HLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIR 173
Query: 557 VNCLAPGITKT----KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
VN +APG T + A + E + RL P+E+ V FL S+ AS+
Sbjct: 174 VNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASF 233
Query: 613 ITGEVIVAAGGM 624
ITG ++ GGM
Sbjct: 234 ITGAILPVDGGM 245
Score = 199 bits (508), Expect = 7e-59
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 8/191 (4%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
GK +VT + GIG AIA+ + EGA V + + + E + G
Sbjct: 2 GLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP----EGKEVAEAIGGA---FF 54
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ + +R + E A G +D+LV+NAA+ G + W ++ EVN+ +
Sbjct: 55 QVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAA-PGSALTVRLPEWRRVLEVNLTAPM 113
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+ +RK GG+IV V+S+ GL + AY+ SK L+ LT+++A DLA IR
Sbjct: 114 HLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIR 173
Query: 188 VNCLAPGITKT 198
VN +APG T
Sbjct: 174 VNAVAPGAIAT 184
Score = 85.2 bits (212), Expect = 1e-18
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
R + G +D+LV+NAA+ + W ++ +VNL + L+
Sbjct: 65 VRFVE--EAAYALGRVDVLVNNAAIAAPG-SALTVRLPEWRRVLEVNLTAPMHLSALAAR 121
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
MRK GG+IV V+S+ G
Sbjct: 122 EMRKVGGGAIVNVASVQGLF 141
Score = 61.3 bits (150), Expect = 2e-10
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY+ SK L LT+ +A DLAP IRVN +APG I T+ IA
Sbjct: 148 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIA 192
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 258 bits (662), Expect = 6e-81
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 14/259 (5%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
M+T +R AGKV VVT GIG I + GA VVI + E L++E
Sbjct: 1 MATG---TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE----SGGRALEQEL 53
Query: 430 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 489
+ ++C V +++D + L ++FG +D +V+NA +P E + ++ E
Sbjct: 54 PGAV-FILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLE 112
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
+N+ T+ LT+ LPY+RK G+++ +SS+ G Y +K A+ +TKA+A D
Sbjct: 113 LNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALD 171
Query: 550 LASENIRVNCLAPGITKT----KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFL 605
+ +RVNC++PG T + AA + + + + P+GR+ P E+G FL
Sbjct: 172 ESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAAAVFL 231
Query: 606 CSDDASYITGEVIVAAGGM 624
S +A++ TG ++ GG
Sbjct: 232 AS-EANFCTGIELLVTGGA 249
Score = 206 bits (527), Expect = 2e-61
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 9/198 (4%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
M+T +R GKV VVT GIG I + GA VVI + E L++E
Sbjct: 1 MATG---TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE----SGGRALEQEL 53
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
+ ++C V +++D + L ++FG +D +V+NA +P E + ++ E
Sbjct: 54 PGAV-FILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLE 112
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
+N+ T+ LT+ LPY+RK G+++ +SS+ G Y +K A+ +TKA+A D
Sbjct: 113 LNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALD 171
Query: 181 LASENIRVNCLAPGITKT 198
+ +RVNC++PG T
Sbjct: 172 ESPYGVRVNCISPGNIWT 189
Score = 86.8 bits (216), Expect = 4e-19
Identities = 22/79 (27%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+++ T + +G +D +V+NA +P + E S + ++ ++NL ++ LT+ LP
Sbjct: 70 KTLVS--ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALP 127
Query: 740 YMRKKKGGSIVYVSSIGGF 758
Y+R K G+++ +SS+ G
Sbjct: 128 YLR-KSQGNVINISSLVGA 145
Score = 61.8 bits (151), Expect = 1e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y +K A+ +TK +A D +P +RVNC++PG I T + + A
Sbjct: 153 PYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAA 197
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 257 bits (660), Expect = 7e-81
Identities = 71/257 (27%), Positives = 120/257 (46%), Gaps = 13/257 (5%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
M L ++ +VT +SDGIG A + GA+V++ R E + + + +E
Sbjct: 1 MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET 60
Query: 430 HQKISGVVC--HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 487
++ + E+ Q+L + + +D ++ NA + P+ E VW +
Sbjct: 61 GRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV 120
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
+VNV +TF+LTQ +LP + K + GS+V+ SS G GAY+ SK A G+ + +A
Sbjct: 121 MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLA 180
Query: 548 QDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
+ +RVNC+ PG T+T A+ + TE +L P ++ + +L
Sbjct: 181 DEYQQ-RLRVNCINPGGTRTAMRASAFPTE----------DPQKLKTPADIMPLYLWLMG 229
Query: 608 DDASYITGEVIVAAGGM 624
DD+ TG A G
Sbjct: 230 DDSRRKTGMTFDAQPGR 246
Score = 211 bits (539), Expect = 3e-63
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
M L ++ +VT +SDGIG A + GA+V++ R E + + + +E
Sbjct: 1 MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET 60
Query: 61 HQKISGVVC--HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
++ + E+ Q+L + + +D ++ NA + P+ E VW +
Sbjct: 61 GRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDV 120
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
+VNV +TF+LTQ +LP + K + GS+V+ SS G GAY+ SK A G+ + +A
Sbjct: 121 MQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFATEGMMQVLA 180
Query: 179 QDLASENIRVNCLAPGITKTKFAAA 203
+ +RVNC+ PG T+T A+
Sbjct: 181 DEYQQ-RLRVNCINPGGTRTAMRAS 204
Score = 88.7 bits (221), Expect = 7e-20
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
Y +D ++ NA + P+ E + VW + VN+ ++F+LTQ +LP + K GS+V+
Sbjct: 90 YPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVF 149
Query: 752 VSSIGGFK 759
SS G +
Sbjct: 150 TSSSVGRQ 157
Score = 63.3 bits (155), Expect = 3e-11
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
GAY+ SK A G+ +V+A++ +RVNC+ PG RT
Sbjct: 161 NWGAYAASKFATEGMMQVLADEYQQ-RLRVNCINPGGTRTAMRASAFP 207
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 257 bits (660), Expect = 1e-80
Identities = 82/268 (30%), Positives = 122/268 (45%), Gaps = 23/268 (8%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
S L KV +VT +S GIG AIA+R EG+ V+ S + G K +
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHD------------PGEAKYDHI 51
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C V + + +H K++G I +LV+NA + G + W +I +VN+ +
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESY-GKIESMSMGEWRRIIDVNLFGYY 110
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
++ +PY+ + SIV +SS+ K AY SK A++GLTK++A D A +R
Sbjct: 111 YASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLR 169
Query: 557 VNCLAPGITKTKFAAALYET---------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
N + P T E E+ PM R+ P E+ VAFL S
Sbjct: 170 CNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLAS 229
Query: 608 DDASYITGEVIVAAGGMQSRLTKSTVEF 635
+AS+ITG + GG+ R ST E
Sbjct: 230 REASFITGTCLYVDGGLSIRAPISTPEL 257
Score = 200 bits (511), Expect = 3e-59
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 14/191 (7%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
S L KV +VT +S GIG AIA+R EG+ V+ S + G K +
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHD------------PGEAKYDHI 51
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C V + + +H K++G I +LV+NA + G + W +I +VN+ +
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESY-GKIESMSMGEWRRIIDVNLFGYY 110
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
++ +PY+ + SIV +SS+ K AY SK A++GLTK++A D A +R
Sbjct: 111 YASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLR 169
Query: 188 VNCLAPGITKT 198
N + P T
Sbjct: 170 CNAVCPATIDT 180
Score = 87.2 bits (217), Expect = 3e-19
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
I K YG I +LV+NA + + S W +I DVNL + ++ +P
Sbjct: 62 KASID--HIFKEYGSISVLVNNAGIESYG-KIESMSMGEWRRIIDVNLFGYYYASKFAIP 118
Query: 740 YMRKKKGGSIVYVSSIGGF 758
YM + + SIV +SS+
Sbjct: 119 YMIRSRDPSIVNISSVQAS 137
Score = 57.6 bits (140), Expect = 3e-09
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILV 699
AY SK A+ GLTK +A D AP +R N + P I T + + +
Sbjct: 145 AYVTSKHAVIGLTKSIALDYAP-LLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKIS 203
Query: 700 SNAAVNP 706
+P
Sbjct: 204 EWGHEHP 210
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 255 bits (655), Expect = 4e-80
Identities = 77/251 (30%), Positives = 123/251 (49%), Gaps = 11/251 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
R KV +VT S GIG A A+ L+ EGA+VV++ + + +G I V
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAI-SVA 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
V+ E + + + +FGGID LV+NAA+ ++ + K VN+
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASE 553
T+ V + KR GG+IV SS Y ++K + GLT+ ++++L
Sbjct: 125 LWCTRAVYKKMTKRGGGAIVNQSSTAAWL-----YSNYYGLAKVGINGLTQQLSRELGGR 179
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
NIR+N +APG T+ +E + V +P+ R+ PD++ G+ FL SD+AS+I
Sbjct: 180 NIRINAIAPGPIDTEANRTT-TPKEMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWI 238
Query: 614 TGEVIVAAGGM 624
TG++ GG
Sbjct: 239 TGQIFNVDGGQ 249
Score = 198 bits (506), Expect = 1e-58
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 10/207 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
R KV +VT S GIG A A+ L+ EGA+VV++ + + +G I V
Sbjct: 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAI-SVA 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
V+ E + + + +FGGID LV+NAA+ ++ + K VN+
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASE 184
T+ V + KR GG+IV SS Y ++K + GLT+ ++++L
Sbjct: 125 LWCTRAVYKKMTKRGGGAIVNQSSTAAWL-----YSNYYGLAKVGINGLTQQLSRELGGR 179
Query: 185 NIRVNCLAPGITKTKFAAAKKEVKKKE 211
NIR+N +APG T+ + +
Sbjct: 180 NIRINAIAPGPIDTEANRTTTPKEMVD 206
Score = 83.3 bits (207), Expect = 6e-18
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPAN--EPLVECSEVVWDKIFDVNLKSSFLLTQEV 737
M T +GGID LV+NAA+ + L+ + K VNL + T+ V
Sbjct: 74 KAMAD--RTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAV 131
Query: 738 LPYMRKKKGGSIVYVSSIGGF 758
M K+ GG+IV SS +
Sbjct: 132 YKKMTKRGGGAIVNQSSTAAW 152
Score = 57.1 bits (139), Expect = 4e-09
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 631 STVEFRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
ST + + Y ++K + GLT+ ++ +L NIR+N +APG I T
Sbjct: 148 STAAWLYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDT 193
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 255 bits (654), Expect = 6e-80
Identities = 82/248 (33%), Positives = 129/248 (52%), Gaps = 4/248 (1%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
RL K+AV+T ++GIG AIA+R + EGA + I+ + +A ++ G + + V
Sbjct: 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVL-TV 59
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C V++ D + + FG DILV+NA + P P E W K FE+NV S F
Sbjct: 60 KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGF 118
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+ + +P +++ G I+ ++S + Y +K A +G T+A+A DL + I
Sbjct: 119 LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGIT 178
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
VN +AP + +T A + + + RL VP ++ G AFL SDDAS+ITG+
Sbjct: 179 VNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQ 238
Query: 617 VIVAAGGM 624
+ GGM
Sbjct: 239 TLAVDGGM 246
Score = 196 bits (501), Expect = 6e-58
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 4/191 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
RL K+AV+T ++GIG AIA+R + EGA + I+ + +A ++ G + + V
Sbjct: 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRRVL-TV 59
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C V++ D + + FG DILV+NA + P P E W K FE+NV S F
Sbjct: 60 KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGF 118
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+ + +P +++ G I+ ++S + Y +K A +G T+A+A DL + I
Sbjct: 119 LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGFTRALASDLGKDGIT 178
Query: 188 VNCLAPGITKT 198
VN +AP + +T
Sbjct: 179 VNAIAPSLVRT 189
Score = 85.6 bits (213), Expect = 8e-19
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ +G DILV+NA + P P E + W K F++N+ S FL+ + +P
Sbjct: 70 EAFGK--QVISTFGRCDILVNNAGIYPLI-PFDELTFEQWKKTFEINVDSGFLMAKAFVP 126
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
M++ G I+ ++S +
Sbjct: 127 GMKRNGWGRIINLTSTTYWL 146
Score = 57.1 bits (139), Expect = 4e-09
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y +K A G T+ +A DL + I VN +AP L+RT
Sbjct: 153 HYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRT 189
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 255 bits (655), Expect = 9e-80
Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 8/252 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
LAG++A+VT S GIG IA+ L GA V I +R L G +
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIP 83
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
++ + ++L + + +DILV+NA + + P + W+K+ ++NV S F
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWG-AALESYPVSGWEKVMQLNVTSVFS 142
Query: 498 LTQEVLPYIRK----RNGGSIVYVSSIGGLAPFKLLG-AYSVSKTALLGLTKAVAQDLAS 552
Q++LP +R+ N ++ + S+ G++ AY SK AL L++ +A++L
Sbjct: 143 CIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVG 202
Query: 553 ENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
E+I VN +APG ++ + +A E +++PMGR P+EM + L +Y
Sbjct: 203 EHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAY 262
Query: 613 ITGEVIVAAGGM 624
+TG VI GG
Sbjct: 263 MTGNVIPIDGGF 274
Score = 196 bits (501), Expect = 1e-57
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 8/200 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G++A+VT S GIG IA+ L GA V I +R L G +
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG--DCQAIP 83
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
++ + ++L + + +DILV+NA + + P + W+K+ ++NV S F
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGTSWG-AALESYPVSGWEKVMQLNVTSVFS 142
Query: 129 LTQEVLPYIRK----RNGGSIVYVSSIGGLAPFKLLG-AYSVSKTALLGLTKAVAQDLAS 183
Q++LP +R+ N ++ + S+ G++ AY SK AL L++ +A++L
Sbjct: 143 CIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVG 202
Query: 184 ENIRVNCLAPGITKTKFAAA 203
E+I VN +APG ++
Sbjct: 203 EHINVNVIAPGRFPSRMTRH 222
Score = 74.9 bits (185), Expect = 6e-15
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
R+ + +L +DILV+NA + L W+K+ +N+ S F Q++LP
Sbjct: 93 RRLAQ--ALGELSARLDILVNNAGTSWG-AALESYPVSGWEKVMQLNVTSVFSCIQQLLP 149
Query: 740 YMRK----KKGGSIVYVSSIGGF 758
+R+ + ++ + S+ G
Sbjct: 150 LLRRSASAENPARVINIGSVAGI 172
Score = 61.8 bits (151), Expect = 1e-10
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF 678
AY SK AL L++++A++L E+I VN +APG ++
Sbjct: 181 AYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 254 bits (651), Expect = 1e-79
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 12/248 (4%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+A+VT + G A + L+ +G +VV ++ + +
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQR-------FESENPGTIAL 54
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATG--PVVECPENVWDKIFEVNVKSTFLLT 499
++ ++L + + ID +VSN + P+ E ++FE LL
Sbjct: 55 AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114
Query: 500 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 559
Q + +R G S+++++S G P Y ++ A + L ++ A+ L+ + I +
Sbjct: 115 QSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYA 174
Query: 560 LAPGITKTKFAAALYE---TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
+ P + E E +VP+GRL PDEMG ++ FL S A+ I G+
Sbjct: 175 IGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQ 234
Query: 617 VIVAAGGM 624
GG
Sbjct: 235 FFAFTGGY 242
Score = 191 bits (488), Expect = 4e-56
Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 9/188 (4%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+A+VT + G A + L+ +G +VV ++ + +
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQR-------FESENPGTIAL 54
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATG--PVVECPENVWDKIFEVNVKSTFLLT 130
++ ++L + + ID +VSN + P+ E ++FE LL
Sbjct: 55 AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114
Query: 131 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 190
Q + +R G S+++++S G P Y ++ A + L ++ A+ L+ + I +
Sbjct: 115 QSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYA 174
Query: 191 LAPGITKT 198
+ P
Sbjct: 175 IGPNFFNN 182
Score = 89.9 bits (224), Expect = 2e-20
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANE--PLVECSEVVWDKIFDVNLKSSFLLTQEV 737
+R++ +T + ID +VSN + PL SE ++F+ LL Q
Sbjct: 60 ERLVD--ATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSA 117
Query: 738 LPYMRKKKGGSIVYVSSIGGF 758
+ +R G S+++++S G
Sbjct: 118 IAPLRAAGGASVIFITSSVGK 138
Score = 60.6 bits (148), Expect = 2e-10
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y ++ A L + A+ L+ + I + + P
Sbjct: 145 PLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNN 182
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 255 bits (653), Expect = 1e-79
Identities = 87/261 (33%), Positives = 126/261 (48%), Gaps = 22/261 (8%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
KVA+VT S GIG A+ L GA VV S E + + +
Sbjct: 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK---------- 59
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V +E+ ++ E KK+G IDILV+NA + P+ P +W +I +VNV ++
Sbjct: 60 -IDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQ-YSPLHLTPTEIWRRIIDVNVNGSY 117
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L+ + +P + GSI+ ++S+ A K AY SK ALLGLT++VA D A IR
Sbjct: 118 LMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIR 176
Query: 557 VNCLAPGITKTKFAAALYET---------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
N + PG T + E E PMGR+ P+E+ +VAFL S
Sbjct: 177 CNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLAS 236
Query: 608 DDASYITGEVIVAAGGMQSRL 628
D +S+ITG + GG+ S+L
Sbjct: 237 DRSSFITGACLTVDGGLLSKL 257
Score = 200 bits (512), Expect = 3e-59
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
T KVA+VT S GIG A+ L GA VV S E + + +
Sbjct: 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFK---------- 59
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V +E+ ++ E KK+G IDILV+NA + P+ P +W +I +VNV ++
Sbjct: 60 -IDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQ-YSPLHLTPTEIWRRIIDVNVNGSY 117
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L+ + +P + GSI+ ++S+ A K AY SK ALLGLT++VA D A IR
Sbjct: 118 LMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYA-PKIR 176
Query: 188 VNCLAPGITKT 198
N + PG T
Sbjct: 177 CNAVCPGTIMT 187
Score = 87.2 bits (217), Expect = 3e-19
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ T K YG IDILV+NA + + PL +W +I DVN+ S+L+ + +P
Sbjct: 69 KEAVE--KTTKKYGRIDILVNNAGIEQYS-PLHLTPTEIWRRIIDVNVNGSYLMAKYTIP 125
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M GSI+ ++S+ +
Sbjct: 126 VMLAIGHGSIINIASVQSY 144
Score = 57.6 bits (140), Expect = 3e-09
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILV 699
AY SK AL GLT+ VA D AP IR N + PG I T + M + +
Sbjct: 152 AYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIE 210
Query: 700 SNAAVNP 706
+P
Sbjct: 211 EWGRQHP 217
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 253 bits (650), Expect = 2e-79
Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 16/253 (6%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
RL GKV ++TA++ GIG A A + EGA V+ + E ++ L+K I
Sbjct: 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE----SKLQELEKYP--GIQTR 55
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V V KK+ + + +D+L + A G V++C E WD +NV+S +
Sbjct: 56 VLDVTKKKQIDQFAN----EVERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMY 110
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
L+ + LP + + G+I+ +SS+ + YS +K A++GLTK+VA D + I
Sbjct: 111 LMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGI 170
Query: 556 RVNCLAPGITKT----KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
R NC+ PG T + A EEA + GR A +E+ + +L SD+++
Sbjct: 171 RCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESA 230
Query: 612 YITGEVIVAAGGM 624
Y+TG ++ GG
Sbjct: 231 YVTGNPVIIDGGW 243
Score = 197 bits (503), Expect = 3e-58
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
RL GKV ++TA++ GIG A A + EGA V+ + E ++ L+K I
Sbjct: 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE----SKLQELEKYP--GIQTR 55
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V V KK+ + + +D+L + A G V++C E WD +NV+S +
Sbjct: 56 VLDVTKKKQIDQFAN----EVERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMY 110
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
L+ + LP + + G+I+ +SS+ + YS +K A++GLTK+VA D + I
Sbjct: 111 LMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGI 170
Query: 187 RVNCLAPGITKT 198
R NC+ PG T
Sbjct: 171 RCNCVCPGTVDT 182
Score = 87.9 bits (219), Expect = 1e-19
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+D+L + A +++C E WD ++N++S +L+ + LP M +K G+I+
Sbjct: 72 VERLDVLFNVAGFVHHG-TVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIIN 130
Query: 752 VSSIGGF 758
+SS+
Sbjct: 131 MSSVASS 137
Score = 62.9 bits (154), Expect = 5e-11
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
YS +K A+ GLTK VA D + IR NC+ PG + T I
Sbjct: 146 VYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQ 190
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 254 bits (652), Expect = 2e-79
Identities = 78/260 (30%), Positives = 134/260 (51%), Gaps = 19/260 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ-KISGVV 437
L GK A+VT S+ GIG AIA L EGA+V+I+ R+E NVN+ ++ ++ + + VV
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ ++ Q + E K+ +DIL++N + + P+ W K+FEVN+ S
Sbjct: 68 ADLGTEQGCQDVIE----KYPKVDILINNLGIFEP-VEYFDIPDEDWFKLFEVNIMSGVR 122
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
LT+ L + +R G +++++S + P + + YS +KT L L++++A+ N+ V
Sbjct: 123 LTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTV 182
Query: 558 NCLAPGITKTKFAAALYE---------TEEAHEIAV----SNVPMGRLAVPDEMGGIVAF 604
N + PG T T+ + EEA + + + RL P+E+ +V F
Sbjct: 183 NTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTF 242
Query: 605 LCSDDASYITGEVIVAAGGM 624
L S +S I G + GG+
Sbjct: 243 LSSPLSSAINGSALRIDGGL 262
Score = 209 bits (535), Expect = 1e-62
Identities = 63/190 (33%), Positives = 108/190 (56%), Gaps = 6/190 (3%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-KISGVV 68
L GK A+VT S+ GIG AIA L AEGA+V+I+ R+E NVN+ ++ ++ + + VV
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV 67
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ ++ Q + E K+ +DIL++N + + P+ W K+FEVN+ S
Sbjct: 68 ADLGTEQGCQDVIE----KYPKVDILINNLGIFEP-VEYFDIPDEDWFKLFEVNIMSGVR 122
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
LT+ L + +R G +++++S + P + + YS +KT L L++++A+ N+ V
Sbjct: 123 LTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTV 182
Query: 189 NCLAPGITKT 198
N + PG T T
Sbjct: 183 NTIMPGSTLT 192
Score = 78.4 bits (194), Expect = 4e-16
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
Y +DIL++N + + + W K+F+VN+ S LT+ L M ++K G +++
Sbjct: 83 YPKVDILINNLGIFEPV-EYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIF 141
Query: 752 VSSIGG 757
++S
Sbjct: 142 IASEAA 147
Score = 56.8 bits (138), Expect = 5e-09
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS +KT L++ +AE N+ VN + PG T
Sbjct: 156 HYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLT 192
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 253 bits (648), Expect = 5e-79
Identities = 78/253 (30%), Positives = 122/253 (48%), Gaps = 12/253 (4%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
KVA+VT + GIG AIA RL +G +V I+ ++ + + G + V V+
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAV-AVKVDVS 61
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
++ E A K GG D++V+NA V P + P+ + DK++ +NVK Q
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVDKVYNINVKGVIWGIQA 120
Query: 502 VLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 560
+ ++ +GG I+ S G L YS SK A+ GLT+ A+DLA I VN
Sbjct: 121 AVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGY 180
Query: 561 APGITKTKFAAALYE---------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
PGI KT A + + +GRL+ P+++ V++L S D+
Sbjct: 181 CPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSD 240
Query: 612 YITGEVIVAAGGM 624
Y+TG+ ++ GGM
Sbjct: 241 YMTGQSLLIDGGM 253
Score = 200 bits (510), Expect = 4e-59
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 3/187 (1%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
KVA+VT + GIG AIA RL +G +V I+ ++ + + G + V V+
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAV-AVKVDVS 61
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
++ E A K GG D++V+NA V P + P+ + DK++ +NVK Q
Sbjct: 62 DRDQVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVDKVYNINVKGVIWGIQA 120
Query: 133 VLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 191
+ ++ +GG I+ S G L YS SK A+ GLT+ A+DLA I VN
Sbjct: 121 AVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGY 180
Query: 192 APGITKT 198
PGI KT
Sbjct: 181 CPGIVKT 187
Score = 79.5 bits (197), Expect = 1e-16
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ K GG D++V+NA V P+ P+ + + DK++++N+K Q +
Sbjct: 67 FAAVE--QARKTLGGFDVIVNNAGVAPST-PIESITPEIVDKVYNINVKGVIWGIQAAVE 123
Query: 740 YMRK-KKGGSIVYVSSIGGF 758
+K GG I+ S G
Sbjct: 124 AFKKEGHGGKIINACSQAGH 143
Score = 57.2 bits (139), Expect = 4e-09
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK A+ GLT+ A DLAP I VN PG+++T
Sbjct: 150 AVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKT 187
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 252 bits (645), Expect = 8e-79
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 24/255 (9%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
A +VT S GIG A+ + L VI+ + Q + + +
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQ----------QSFSAENLKFIKA 51
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
+ K++D + + K D + NA + G + + K+ ++NV S+
Sbjct: 52 DLTKQQDITNVLDII--KNVSFDGIFLNAGILIK-GSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
+ + ++ G SIV+ S AY++SK A+ +TK++A DLA IRVN
Sbjct: 109 IKGLENNLKV--GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVN 166
Query: 559 CLAPGITKTKFAAALYET---------EEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
+ PG T L + +EA + P+ R+A P E+ +V FL SD
Sbjct: 167 TVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDK 226
Query: 610 ASYITGEVIVAAGGM 624
+ ++TG +I GG
Sbjct: 227 SKFMTGGLIPIDGGY 241
Score = 196 bits (501), Expect = 5e-58
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 15/189 (7%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
+VT S GIG A+ + L VI+ + Q + + +
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQ----------QSFSAENLKFIKA 51
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
+ K++D + + K D + NA + G + + K+ ++NV S+
Sbjct: 52 DLTKQQDITNVLDII--KNVSFDGIFLNAGILIK-GSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
+ + ++ G SIV+ S AY++SK A+ +TK++A DLA IRVN
Sbjct: 109 IKGLENNLKV--GASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVN 166
Query: 190 CLAPGITKT 198
+ PG T
Sbjct: 167 TVCPGTVDT 175
Score = 84.9 bits (211), Expect = 2e-18
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
D + NA + + + K+ D+N+ SS + + + K G SIV+
Sbjct: 68 NVSFDGIFLNAGILIKG-SIFDIDIESIKKVLDLNVWSSIYFIKGLENNL--KVGASIVF 124
Query: 752 VSSIGGFK 759
S F
Sbjct: 125 NGSDQCFI 132
Score = 62.2 bits (152), Expect = 8e-11
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY++SK A+ +TK +A DLA IRVN + PG + T +I
Sbjct: 139 AYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQ 183
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 252 bits (645), Expect = 1e-78
Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 14/256 (5%)
Query: 381 GKVAVVTASSDGIGFAIAKRLSTEGASVVIS--SRKESNVNKAVETLQKEGHQKISGVVC 438
KVA+VT + GIG I+++L+ +G + ++ ++E + ++ ++ + + V
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAV-FVGL 60
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
V K + + A +K GG D+LV+NA + P++E E +I+ VNV S F
Sbjct: 61 DVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQ-IKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 499 TQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
Q + G I+ +SI + F +L AYS +K A+ GLT+A AQ+LA + V
Sbjct: 120 IQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTV 179
Query: 558 NCLAPGITKTKFAAALYE---------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
N APGI T + E + S++ +GR +VP+++ G+V+FL S+
Sbjct: 180 NAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASE 239
Query: 609 DASYITGEVIVAAGGM 624
+++Y+TG+V++ GGM
Sbjct: 240 NSNYVTGQVMLVDGGM 255
Score = 198 bits (505), Expect = 2e-58
Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 5/190 (2%)
Query: 12 GKVAVVTASSDGIGFAIAKRLSAEGASVVIS--SRKESNVNKAVETLQKEGHQKISGVVC 69
KVA+VT + GIG I+++L+A+G + ++ ++E + ++ ++ + + V
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAV-FVGL 60
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
V K + + A +K GG D+LV+NA + P++E E +I+ VNV S F
Sbjct: 61 DVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQ-IKPLLEVTEEDLKQIYSVNVFSVFFG 119
Query: 130 TQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
Q + G I+ +SI + F +L AYS +K A+ GLT+A AQ+LA + V
Sbjct: 120 IQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTV 179
Query: 189 NCLAPGITKT 198
N APGI T
Sbjct: 180 NAYAPGIVGT 189
Score = 79.9 bits (198), Expect = 9e-17
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D I + GG D+LV+NA + PL+E +E +I+ VN+ S F Q
Sbjct: 69 DSAID--EAAEKLGGFDVLVNNAGIAQIK-PLLEVTEEDLKQIYSVNVFSVFFGIQAASR 125
Query: 740 YMRK-KKGGSIVYVSSIGGFK 759
+ G I+ +SI +
Sbjct: 126 KFDELGVKGKIINAASIAAIQ 146
Score = 57.2 bits (139), Expect = 4e-09
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
F + AYS +K A+ GLT+ A++LAP+ VN APG++ T
Sbjct: 148 FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGT 189
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 251 bits (644), Expect = 2e-78
Identities = 78/259 (30%), Positives = 117/259 (45%), Gaps = 12/259 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
GK A+V + G+G A +RL GA V+++ R ESN+ + E H +
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVH----AL 59
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+A + L A + G ID+L NA V+ P + E +D+ F VN K F
Sbjct: 60 RSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSEL-EPFDQVSEASYDRQFAVNTKGAF 118
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
Q + P IR+ GGSIV+ SS+ + YS SK AL+ +A +L IR
Sbjct: 119 FTVQRLTPLIRE--GGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIR 176
Query: 557 VNCLAPGITKTKFAAALYETEEAHE----IAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
VN ++PG T TE + + PM R DE+ V FL +A++
Sbjct: 177 VNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFLAF-EATF 235
Query: 613 ITGEVIVAAGGMQSRLTKS 631
TG + GG+ +L+ +
Sbjct: 236 TTGAKLAVDGGLGQKLSTA 254
Score = 201 bits (515), Expect = 8e-60
Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 7/191 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
GK A+V + G+G A +RL GA V+++ R ESN+ + E H +
Sbjct: 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVH----AL 59
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+A + L A + G ID+L NA V+ P + E +D+ F VN K F
Sbjct: 60 RSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSEL-EPFDQVSEASYDRQFAVNTKGAF 118
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
Q + P IR+ GGSIV+ SS+ + YS SK AL+ +A +L IR
Sbjct: 119 FTVQRLTPLIRE--GGSIVFTSSVADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIR 176
Query: 188 VNCLAPGITKT 198
VN ++PG T
Sbjct: 177 VNSVSPGFIDT 187
Score = 78.3 bits (194), Expect = 3e-16
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ A + + G ID+L NA V+ P + SE +D+ F VN K +F Q + P
Sbjct: 70 AVLGA--AAGQTLGAIDLLHINAGVSELE-PFDQVSEASYDRQFAVNTKGAFFTVQRLTP 126
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+R +GGSIV+ SS+
Sbjct: 127 LIR--EGGSIVFTSSVADEG 144
Score = 58.3 bits (142), Expect = 2e-09
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK AL V+A +L P IRVN ++PG I T
Sbjct: 150 SVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDT 187
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 250 bits (642), Expect = 3e-78
Identities = 82/255 (32%), Positives = 131/255 (51%), Gaps = 7/255 (2%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
++RL GKVA++T + GIG AIA + EGA V+I+ R KA +++ +I
Sbjct: 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPD--QIQF 58
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ ++ KLF+ EK FG + LV+NA + V E W K+ VN+
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWRKLLAVNLDGV 117
Query: 496 FLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE- 553
F T+ + ++ + G SI+ +SSI G LGAY+ SK A+ ++K+ A D A +
Sbjct: 118 FFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKD 177
Query: 554 -NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
++RVN + PG KT L EEA + PMG + P+++ I +L S+++ +
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ-RTKTPMGHIGEPNDIAYICVYLASNESKF 236
Query: 613 ITGEVIVAAGGMQSR 627
TG V GG ++
Sbjct: 237 ATGSEFVVDGGYTAQ 251
Score = 195 bits (497), Expect = 2e-57
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
++RL GKVA++T + GIG AIA + EGA V+I+ R KA +++ +I
Sbjct: 1 SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPD--QIQF 58
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ ++ KLF+ EK FG + LV+NA + V E W K+ VN+
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWRKLLAVNLDGV 117
Query: 127 FLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE- 184
F T+ + ++ + G SI+ +SSI G LGAY+ SK A+ ++K+ A D A +
Sbjct: 118 FFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKD 177
Query: 185 -NIRVNCLAPGITKT 198
++RVN + PG KT
Sbjct: 178 YDVRVNTVHPGYIKT 192
Score = 79.5 bits (197), Expect = 1e-16
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ +T+K +G + LV+NA + N+ + E + W K+ VNL F T+ +
Sbjct: 70 TKLFD--ATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQ 126
Query: 740 YMRK-KKGGSIVYVSSIGGF 758
M+ G SI+ +SSI GF
Sbjct: 127 RMKNKGLGASIINMSSIEGF 146
Score = 52.1 bits (126), Expect = 2e-07
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 640 AYSVSKTALFGLTKVVAEDLA--PENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI 695
AY+ SK A+ ++K A D A ++RVN + PG I+T D +
Sbjct: 154 AYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKT 211
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 250 bits (642), Expect = 4e-78
Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 5/252 (1%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
++ + KV ++T S G+G +A R + EGA VVI+ R + + +A +++ +I
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP-GQILT 59
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
V V +D QK+ E ++KFG IDIL++NAA N P + N W+ + + + T
Sbjct: 60 VQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFI-CPAEDLSVNGWNSVINIVLNGT 118
Query: 496 FLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE- 553
F +Q + Y I K G+I+ + + + + +K +L +TK +A + +
Sbjct: 119 FYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKY 178
Query: 554 NIRVNCLAPGITKTKFAAA-LYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
IRVN +APG + A L+ +EE + + +VP+GRL P+E+ G+ +LCSD+A+Y
Sbjct: 179 GIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAY 238
Query: 613 ITGEVIVAAGGM 624
I G + GG
Sbjct: 239 INGTCMTMDGGQ 250
Score = 191 bits (487), Expect = 7e-56
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 4/200 (2%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
++ + KV ++T S G+G +A R + EGA VVI+ R + + +A +++ +I
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP-GQILT 59
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
V V +D QK+ E ++KFG IDIL++NAA N P + N W+ + + + T
Sbjct: 60 VQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFI-CPAEDLSVNGWNSVINIVLNGT 118
Query: 127 FLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE- 184
F +Q + Y I K G+I+ + + + + +K +L +TK +A + +
Sbjct: 119 FYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKY 178
Query: 185 NIRVNCLAPGITKTKFAAAK 204
IRVN +APG + A K
Sbjct: 179 GIRVNAIAPGPIERTGGADK 198
Score = 75.2 bits (186), Expect = 4e-15
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+MI D+ +G IDIL++NAA N P + S W+ + ++ L +F +Q +
Sbjct: 71 QKMIE--QIDEKFGRIDILINNAAGNFIC-PAEDLSVNGWNSVINIVLNGTFYCSQAIGK 127
Query: 740 YMRKKK-GGSIVYVSSIGGF 758
Y +K G+I+ + + +
Sbjct: 128 YWIEKGIKGNIINMVATYAW 147
Score = 49.0 bits (118), Expect = 2e-06
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 641 YSVSKTALFGLTKVVAEDLAPE-NIRVNCLAPGLIRTKFGDRMIAM 685
+ +K + +TK +A + + IRVN +APG I G + +
Sbjct: 156 SAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWI 201
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 251 bits (642), Expect = 6e-78
Identities = 75/247 (30%), Positives = 116/247 (46%), Gaps = 2/247 (0%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L KVA +T GIGF IA+ G VI+SR V A L ++ +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
V + A K+FG IDIL++ AA N P N + + +++ TF +
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFL-CPAGALSFNAFKTVMDIDTSGTFNV 143
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
++ + + +GG IV +++ G L +K A+ +T+ +A + +NIRVN
Sbjct: 144 SRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVN 203
Query: 559 CLAPG-ITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEV 617
LAPG I+ T+ L + + V+ P+ RL E+ V +L S ASY+TG V
Sbjct: 204 SLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAV 263
Query: 618 IVAAGGM 624
+VA GG
Sbjct: 264 LVADGGA 270
Score = 193 bits (492), Expect = 3e-56
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 1/195 (0%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L KVA +T GIGF IA+ G VI+SR V A L ++ +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM 84
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
V + A K+FG IDIL++ AA N P N + + +++ TF +
Sbjct: 85 DVRAPPAVMAAVDQALKEFGRIDILINCAAGNFL-CPAGALSFNAFKTVMDIDTSGTFNV 143
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
++ + + +GG IV +++ G L +K A+ +T+ +A + +NIRVN
Sbjct: 144 SRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVN 203
Query: 190 CLAPGITKTKFAAAK 204
LAPG +
Sbjct: 204 SLAPGPISGTEGLRR 218
Score = 78.1 bits (193), Expect = 5e-16
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
A+ K +G IDIL++ AA N P S + + D++ +F +++ + +
Sbjct: 95 AVDQALKEFGRIDILINCAAGNFLC-PAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFR 153
Query: 744 KKGGSIVYVSSIGGFK 759
GG IV +++ G +
Sbjct: 154 DHGGVIVNITATLGNR 169
Score = 53.4 bits (129), Expect = 7e-08
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
+K A+ +T+ +A + P+NIRVN LAPG I G R +
Sbjct: 173 LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLG 220
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 251 bits (643), Expect = 1e-77
Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 3/248 (1%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
GKVA +T G+G + LS+ GA VI+SRK + E + + K+ + C
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQC 83
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
V + Q K G +I+++NAA N P N W I ++ + T +
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFV 142
Query: 499 TQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
T E+ I+ + G + + +++I + + +K + ++K++A + +R
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRF 202
Query: 558 NCLAPGITKTKFAAALY-ETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N + PG KTK A + T + + +P GRL +E+ + AFLCSD AS+I G
Sbjct: 203 NVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGA 262
Query: 617 VIVAAGGM 624
VI GG
Sbjct: 263 VIKFDGGE 270
Score = 195 bits (497), Expect = 9e-57
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 2/196 (1%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
GKVA +T G+G + LS+ GA VI+SRK + E + + K+ + C
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQC 83
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
V + Q K G +I+++NAA N P N W I ++ + T +
Sbjct: 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFV 142
Query: 130 TQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
T E+ I+ + G + + +++I + + +K + ++K++A + +R
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRF 202
Query: 189 NCLAPGITKTKFAAAK 204
N + PG KTK A ++
Sbjct: 203 NVIQPGPIKTKGAFSR 218
Score = 74.9 bits (185), Expect = 8e-15
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ K+ G +I+++NAA N + P S W I D+ L + +T E+
Sbjct: 92 QNTVS--ELIKVAGHPNIVINNAAGNFIS-PTERLSPNAWKTITDIVLNGTAFVTLEIGK 148
Query: 740 YMRK-KKGGSIVYVSSIGGF 758
+ K +KG + + +++I
Sbjct: 149 QLIKAQKGAAFLSITTIYAE 168
Score = 56.1 bits (136), Expect = 1e-08
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
F+ + +K + ++K +A + +R N + PG I+TK +
Sbjct: 173 FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD 220
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 248 bits (636), Expect = 2e-77
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 11/248 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
LAG+ +VT + GIG + L GA VV SR +++++ V I V
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-----IEPVC 58
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ E ++ G +D+LV+NAAV P +E + +D+ FEVN+++
Sbjct: 59 VDLGDWEATERALGS----VGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQ 113
Query: 498 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
++Q V I + G+IV VSS Y +K AL LTK +A +L IR
Sbjct: 114 VSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIR 173
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
VN + P + T A + + ++ +P+G+ A + + + FL SD + TG
Sbjct: 174 VNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGS 233
Query: 617 VIVAAGGM 624
+ GG
Sbjct: 234 TLPVEGGF 241
Score = 188 bits (480), Expect = 5e-55
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G+ +VT + GIG + L A GA VV SR +++++ V I V
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-----IEPVC 58
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ E ++ G +D+LV+NAAV P +E + +D+ FEVN+++
Sbjct: 59 VDLGDWEATERALGS----VGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQ 113
Query: 129 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
++Q V I + G+IV VSS Y +K AL LTK +A +L IR
Sbjct: 114 VSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIR 173
Query: 188 VNCLAPGITKTKFAAA 203
VN + P + T A
Sbjct: 174 VNAVNPTVVMTSMGQA 189
Score = 81.4 bits (202), Expect = 2e-17
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK-GGSIV 750
G +D+LV+NAAV +P +E ++ +D+ F+VNL++ ++Q V + + G+IV
Sbjct: 74 VGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIV 132
Query: 751 YVSSIGGF 758
VSS
Sbjct: 133 NVSSQCSQ 140
Score = 61.0 bits (149), Expect = 2e-10
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y +K AL LTKV+A +L P IRVN + P ++ T G +
Sbjct: 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS 192
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 248 bits (637), Expect = 2e-77
Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 8/249 (3%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
+ L+GK ++T + G+G A++ GA VV++ + L G
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GD-AARYQ 56
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V +ED Q++ +A ++FG +D LV+NA ++ + + K+ E+N+ F
Sbjct: 57 HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVF 115
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+ + V+P ++ GGSIV +SS GL L +Y SK + GL+K A +L ++ IR
Sbjct: 116 IGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIR 175
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAV-PDEMGGIVAFLCSDDASYITG 615
VN + PG+T T A E N PMGR+ P E+ G V L SD +SY+TG
Sbjct: 176 VNSVHPGMTYTPMTAET--GIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTG 233
Query: 616 EVIVAAGGM 624
+ GG
Sbjct: 234 AELAVDGGW 242
Score = 196 bits (501), Expect = 7e-58
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 5/191 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
+ L+GK ++T + G+G A++ A GA VV++ + L G
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GD-AARYQ 56
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V +ED Q++ +A ++FG +D LV+NA ++ + + K+ E+N+ F
Sbjct: 57 HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVF 115
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ + V+P ++ GGSIV +SS GL L +Y SK + GL+K A +L ++ IR
Sbjct: 116 IGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIR 175
Query: 188 VNCLAPGITKT 198
VN + PG+T T
Sbjct: 176 VNSVHPGMTYT 186
Score = 81.4 bits (202), Expect = 3e-17
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
R++A + +G +D LV+NA ++ L S + K+ ++NL F+ + V+P
Sbjct: 67 QRVVA--YAREEFGSVDGLVNNAGISTGM-FLETESVERFRKVVEINLTGVFIGMKTVIP 123
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M+ GGSIV +SS G
Sbjct: 124 AMKDAGGGSIVNISSAAGL 142
Score = 59.0 bits (144), Expect = 9e-10
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+Y SK + GL+K+ A +L + IRVN + PG+ T
Sbjct: 149 SSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYT 186
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 247 bits (632), Expect = 9e-77
Identities = 72/249 (28%), Positives = 113/249 (45%), Gaps = 7/249 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL G A VT + GIG I + + GA +++ R+ + +++A + L +V
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAA---RIV 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V E AE + ILV++A + +E + W ++ VNV F
Sbjct: 65 ADVTDAEAMTAAAAEAEA-VAPVSILVNSAGIARL-HDALETDDATWRQVMAVNVDGMFW 122
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGL--APFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
++ + R G+IV + S+ G + +Y SK A+ LT+A+A + A +
Sbjct: 123 ASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGV 182
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
RVN LAPG T+ + E E E + PMGR P E+ FL S ASY+TG
Sbjct: 183 RVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTG 242
Query: 616 EVIVAAGGM 624
++ GG
Sbjct: 243 AILAVDGGY 251
Score = 188 bits (479), Expect = 1e-54
Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL G A VT + GIG I + +A GA +++ R+ + +++A + L +V
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAA---RIV 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V E AE + ILV++A + +E + W ++ VNV F
Sbjct: 65 ADVTDAEAMTAAAAEAE-AVAPVSILVNSAGIARL-HDALETDDATWRQVMAVNVDGMFW 122
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGL--APFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
++ + R G+IV + S+ G + +Y SK A+ LT+A+A + A +
Sbjct: 123 ASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGV 182
Query: 187 RVNCLAPGITKTKFAAA 203
RVN LAPG T+
Sbjct: 183 RVNALAPGYVATEMTLK 199
Score = 81.4 bits (202), Expect = 2e-17
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
A + + + ILV++A + +E + W ++ VN+ F ++ M
Sbjct: 75 AAAAEAEAVAPVSILVNSAGIA-RLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVA 133
Query: 744 KKGGSIVYVSSIGGF 758
+ G+IV + S+ G
Sbjct: 134 RGAGAIVNLGSMSGT 148
Score = 57.5 bits (140), Expect = 3e-09
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 636 RFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+F +Y SK A+ LT+ +A + A +RVN LAPG + T
Sbjct: 154 QFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVAT 194
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 246 bits (630), Expect = 1e-76
Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 11/248 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+G A+VT + GIG K L GA VV +R S + +L KE I V
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS----DLVSLAKECP-GIEPVC 58
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ + +K G +D+LV+NAA+ P +E + +D+ F VN++S F
Sbjct: 59 VDLGDWDATEKALGG----IGPVDLLVNNAALV-IMQPFLEVTKEAFDRSFSVNLRSVFQ 113
Query: 498 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
++Q V I + GSIV VSS+ F L YS +K A+ LTKA+A +L IR
Sbjct: 114 VSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIR 173
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
VN + P + T + E P+ + A +++ + FL SD ++ +G
Sbjct: 174 VNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGG 233
Query: 617 VIVAAGGM 624
I+ G
Sbjct: 234 GILVDAGY 241
Score = 186 bits (475), Expect = 2e-54
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+G A+VT + GIG K L A GA VV +R S + +L KE I V
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS----DLVSLAKECP-GIEPVC 58
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ + +K G +D+LV+NAA+ P +E + +D+ F VN++S F
Sbjct: 59 VDLGDWDATEKALGG----IGPVDLLVNNAALV-IMQPFLEVTKEAFDRSFSVNLRSVFQ 113
Query: 129 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
++Q V I + GSIV VSS+ F L YS +K A+ LTKA+A +L IR
Sbjct: 114 VSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIR 173
Query: 188 VNCLAPGITKTKFAAA 203
VN + P + T
Sbjct: 174 VNSVNPTVVLTDMGKK 189
Score = 81.0 bits (201), Expect = 3e-17
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK-GGSIV 750
G +D+LV+NAA+ +P +E ++ +D+ F VNL+S F ++Q V M + GSIV
Sbjct: 74 IGPVDLLVNNAALV-IMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIV 132
Query: 751 YVSSIGGF 758
VSS+
Sbjct: 133 NVSSMVAH 140
Score = 60.2 bits (147), Expect = 3e-10
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
+ YS +K A+ LTK +A +L P IRVN + P ++ T G ++ A
Sbjct: 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA 192
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 246 bits (631), Expect = 3e-76
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 6/256 (2%)
Query: 372 TAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ 431
A G++A+VT G+G IA+ LS EG SVVI+ R+ ++ A +
Sbjct: 24 MAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGN 83
Query: 432 KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVN 491
+ VVC V + LF +F +D+LV+NA N P+ E W+ I N
Sbjct: 84 IVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAAN 143
Query: 492 VKSTFLLTQEVLPYIRKRN--GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
+ FL TQ ++ + GG I+ SI P Y+ +K A+ GLTK+ A D
Sbjct: 144 LTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALD 203
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD- 608
+I + G T A + A V + + V ++ S
Sbjct: 204 GRMHDIACGQIDIGNAATDMTARMSTGVLQ---ANGEVAAEPTIPIEHIAEAVVYMASLP 260
Query: 609 DASYITGEVIVAAGGM 624
++ + ++A
Sbjct: 261 LSANVLTMTVMATRMP 276
Score = 209 bits (533), Expect = 3e-62
Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 2/217 (0%)
Query: 3 TAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ 62
A G++A+VT G+G IA+ LSAEG SVVI+ R+ ++ A +
Sbjct: 24 MAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGN 83
Query: 63 KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVN 122
+ VVC V + LF +F +D+LV+NA N P+ E W+ I N
Sbjct: 84 IVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAAN 143
Query: 123 VKSTFLLTQEVLPYIRKRN--GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
+ FL TQ ++ + GG I+ SI P Y+ +K A+ GLTK+ A D
Sbjct: 144 LTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAITGLTKSTALD 203
Query: 181 LASENIRVNCLAPGITKTKFAAAKKEVKKKETNDEPI 217
+I + G T A + +
Sbjct: 204 GRMHDIACGQIDIGNAATDMTARMSTGVLQANGEVAA 240
Score = 81.5 bits (202), Expect = 4e-17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ A + + +D+LV+NA N PL E + W+ I NL +FL TQ
Sbjct: 99 AALFA--AVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFR 156
Query: 740 YMRKK--KGGSIVYVSSIGGF 758
M+ + +GG I+ SI
Sbjct: 157 MMKAQTPRGGRIINNGSISAQ 177
Score = 59.9 bits (146), Expect = 6e-10
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y+ +K A+ GLTK A D +I + G T RM
Sbjct: 185 PYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMST 229
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 246 bits (630), Expect = 4e-76
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 7/250 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L GKVA VT SS GIG+A+A+ + GA V I KA + G
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGV-HSKAYK 89
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVEC-PENVWDKIFEVNVKSTF 496
C+++ + ++ EK FG ID+ V+NA V GP ++ + W+KI V++ +
Sbjct: 90 CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVY 149
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
+ + +K GS++ SSI G +L Y+ +K A L K++A + A
Sbjct: 150 YCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAP-F 208
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
RVN ++PG T +++ P+GR + E+ G +L S+ +++ T
Sbjct: 209 ARVNTISPGYIDTDITDFA--SKDMKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTT 266
Query: 615 GEVIVAAGGM 624
G +V GG
Sbjct: 267 GSDVVIDGGY 276
Score = 191 bits (488), Expect = 1e-55
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 6/206 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L GKVA VT SS GIG+A+A+ + GA V I KA + G
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGV-HSKAYK 89
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVEC-PENVWDKIFEVNVKSTF 127
C+++ + ++ EK FG ID+ V+NA V GP ++ + W+KI V++ +
Sbjct: 90 CNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVY 149
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
+ + +K GS++ SSI G +L Y+ +K A L K++A + A
Sbjct: 150 YCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAP-F 208
Query: 186 IRVNCLAPGITKTKF-AAAKKEVKKK 210
RVN ++PG T A K++K K
Sbjct: 209 ARVNTISPGYIDTDITDFASKDMKAK 234
Score = 80.7 bits (200), Expect = 8e-17
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEV-VWDKIFDVNLKSSFLLTQEVL 738
+ I+ +K +G ID+ V+NA V P ++ W+KI V+L + + +
Sbjct: 99 EETIS--QQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIG 156
Query: 739 PYMRKKKGGSIVYVSSIGGF 758
+K GS++ SSI G
Sbjct: 157 KIFKKNGKGSLIITSSISGK 176
Score = 51.4 bits (124), Expect = 4e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF 678
Y+ +K A L K +A + AP RVN ++PG I T
Sbjct: 186 PYNTAKAACTHLAKSLAIEWAP-FARVNTISPGYIDTDI 223
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 245 bits (629), Expect = 5e-76
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 19/260 (7%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+L G+VA++T + G+G A+ R EGA V + + + + G + GVV
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGNAV-GVV 57
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV----WDKIFEVNVK 493
V +D+++ E FG ID L+ NA + + + + PE+ +D IF VNVK
Sbjct: 58 GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
+ LP + GS+V+ S G P Y+ +K A++GL + +A +LA
Sbjct: 118 GYIHAVKACLPALVSS-RGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP- 175
Query: 554 NIRVNCLAPGITKT--------KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFL 605
++RVN +APG T + + ++ S +P+GR+ +E G F
Sbjct: 176 HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFF 235
Query: 606 CSDDAS-YITGEVIVAAGGM 624
+ S TG ++ GGM
Sbjct: 236 ATRGDSLPATGALLNYDGGM 255
Score = 196 bits (500), Expect = 2e-57
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 10/212 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+LTG+VA++T + G+G A+ R AEGA V + + + + G + GVV
Sbjct: 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---GGNAV-GVV 57
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV----WDKIFEVNVK 124
V +D+++ E FG ID L+ NA + + + + PE+ +D IF VNVK
Sbjct: 58 GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
+ LP + GS+V+ S G P Y+ +K A++GL + +A +LA
Sbjct: 118 GYIHAVKACLPALVSS-RGSVVFTISNAGFYPNGGGPLYTATKHAVVGLVRQMAFELAP- 175
Query: 185 NIRVNCLAPGITKTKFAAAKKEVKKKETNDEP 216
++RVN +APG T +++
Sbjct: 176 HVRVNGVAPGGMNTDLRGPSSLGLSEQSISSV 207
Score = 83.4 bits (207), Expect = 8e-18
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSE----VVWDKIFDVNLKSSFLLTQ 735
R +G ID L+ NA + + L + E +D IF VN+K +
Sbjct: 67 KRAAE--RCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVK 124
Query: 736 EVLPYMRKKKGGSIVYVSSIGGFK 759
LP + GS+V+ S GF
Sbjct: 125 ACLPALV-SSRGSVVFTISNAGFY 147
Score = 54.9 bits (133), Expect = 2e-08
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ +K A+ GL + +A +LAP ++RVN +APG + T
Sbjct: 154 LYTATKHAVVGLVRQMAFELAP-HVRVNGVAPGGMNT 189
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 245 bits (627), Expect = 6e-76
Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 3/248 (1%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L GK A+VT S+ G+GFA A+ L+ GA V+++ + + + ++V+TL ++G+ GV
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVA 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V + + F + + +DIL++NA + P+VE W K+ + N+ S FL
Sbjct: 65 FDVTDELAIEAAFSKLDAEGIHVDILINNAGIQ-YRKPMVELELENWQKVIDTNLTSAFL 123
Query: 498 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+++ I + +GG I+ + S+ A + Y+ +K + LT ++A + A NI+
Sbjct: 124 VSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQ 183
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N + PG T AL E ++ S+ P R P+E+ G FL S + YI G+
Sbjct: 184 TNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQ 243
Query: 617 VIVAAGGM 624
+I GG
Sbjct: 244 IIYVDGGW 251
Score = 190 bits (485), Expect = 1e-55
Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 3/196 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
LTGK A+VT S+ G+GFA A+ L+A GA V+++ + + + ++V+TL ++G+ GV
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY-DAHGVA 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V + + F + + +DIL++NA + P+VE W K+ + N+ S FL
Sbjct: 65 FDVTDELAIEAAFSKLDAEGIHVDILINNAGIQ-YRKPMVELELENWQKVIDTNLTSAFL 123
Query: 129 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+++ I + +GG I+ + S+ A + Y+ +K + LT ++A + A NI+
Sbjct: 124 VSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQ 183
Query: 188 VNCLAPGITKTKFAAA 203
N + PG T A
Sbjct: 184 TNAIGPGYILTDMNTA 199
Score = 75.2 bits (186), Expect = 3e-15
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ + D +DIL++NA + +P+VE W K+ D NL S+FL+++
Sbjct: 74 EAAFS--KLDAEGIHVDILINNAGIQ-YRKPMVELELENWQKVIDTNLTSAFLVSRSAAK 130
Query: 740 YMRKKK-GGSIVYVSSIGGF 758
M + GG I+ + S+
Sbjct: 131 RMIARNSGGKIINIGSLTSQ 150
Score = 55.9 bits (136), Expect = 1e-08
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+ Y+ +K + LT +A + A NI+ N + PG I T
Sbjct: 155 TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILT 194
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 244 bits (626), Expect = 1e-75
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 12/272 (4%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSR-KESNVNKAV 422
S+ + + + + K AV+T S+ GIG AIA+ L+ GA++V++ +
Sbjct: 8 SSGVDLGTENLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVT 67
Query: 423 ETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPEN 482
+ + + + K + + +FGG DILV+NA V + + P
Sbjct: 68 DEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQF-VEKIEDFPVE 126
Query: 483 VWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGL 542
WD+I VN+ S+F + +P ++K+ G I+ ++S GL AY +K ++GL
Sbjct: 127 QWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGL 186
Query: 543 TKAVAQDLASENIRVNCLAPGITKT----------KFAAALYETEEAHEIAVSNVPMGRL 592
TK VA ++A + VN + PG T + E + +E+ + P +
Sbjct: 187 TKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKF 246
Query: 593 AVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
+++ + +L DDA+ ITG + GG
Sbjct: 247 ITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278
Score = 195 bits (499), Expect = 3e-57
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 2/191 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSR-KESNVNKAVETLQKEGHQKISGV 67
+ K AV+T S+ GIG AIA+ L+ GA++V++ + + + +
Sbjct: 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHH 81
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ K + + +FGG DILV+NA V + + P WD+I VN+ S+F
Sbjct: 82 PADMTKPSEIADMMAMVADRFGGADILVNNAGVQF-VEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ +P ++K+ G I+ ++S GL AY +K ++GLTK VA ++A +
Sbjct: 141 HTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVT 200
Query: 188 VNCLAPGITKT 198
VN + PG T
Sbjct: 201 VNSICPGYVLT 211
Score = 84.2 bits (209), Expect = 4e-18
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
M +GG DILV+NA V + + WD+I VNL SSF + +P M+K
Sbjct: 94 MMAMVADRFGGADILVNNAGVQFVE-KIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKK 152
Query: 744 KKGGSIVYVSSIGG 757
K G I+ ++S G
Sbjct: 153 KGWGRIINIASAHG 166
Score = 56.9 bits (138), Expect = 6e-09
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY +K + GLTK VA ++A + VN + PG + T ++ I
Sbjct: 175 AYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIP 219
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 243 bits (624), Expect = 2e-75
Identities = 65/261 (24%), Positives = 119/261 (45%), Gaps = 10/261 (3%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI---SSRKESNVNKAVETLQ 426
MS L KV V+ +G AK + E ++V+ ++ NK + L+
Sbjct: 1 MSLT-KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE 59
Query: 427 KEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDK 486
+G + ++ +E+ KLF+ AEK+FG +DI ++ P+VE E +D
Sbjct: 60 DQGAKVAL-YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVL-KKPIVETSEAEFDA 117
Query: 487 IFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 546
+ +N K + ++ ++ G I+ +++ A Y+ +K + T+A
Sbjct: 118 MDTINNKVAYFFIKQAAKHMNP--NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAA 175
Query: 547 AQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
+++L + I VN +APG T F ET+E+ S +L +++ I+ FL
Sbjct: 176 SKELMKQQISVNAIAPGPMDTSFFYGQ-ETKESTAFHKSQAMGNQLTKIEDIAPIIKFLT 234
Query: 607 SDDASYITGEVIVAAGGMQSR 627
+ D +I G+ I A GG +R
Sbjct: 235 T-DGWWINGQTIFANGGYTTR 254
Score = 192 bits (490), Expect = 3e-56
Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 8/209 (3%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI---SSRKESNVNKAVETLQ 57
MS L KV V+ +G AK + E ++V+ ++ NK + L+
Sbjct: 1 MSLT-KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE 59
Query: 58 KEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDK 117
+G + ++ +E+ KLF+ AEK+FG +DI ++ P+VE E +D
Sbjct: 60 DQGAKVAL-YQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVL-KKPIVETSEAEFDA 117
Query: 118 IFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 177
+ +N K + ++ ++ G I+ +++ A Y+ +K + T+A
Sbjct: 118 MDTINNKVAYFFIKQAAKHMNP--NGHIITIATSLLAAYTGFYSTYAGNKAPVEHYTRAA 175
Query: 178 AQDLASENIRVNCLAPGITKTKFAAAKKE 206
+++L + I VN +APG T F ++
Sbjct: 176 SKELMKQQISVNAIAPGPMDTSFFYGQET 204
Score = 76.0 bits (188), Expect = 2e-15
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ +K +G +DI ++ P+VE SE +D + +N K ++ ++
Sbjct: 79 AKLFD--FAEKEFGKVDIAINTVGKVLKK-PIVETSEAEFDAMDTINNKVAYFFIKQAAK 135
Query: 740 YMRKKKGGSIVYVSSIGG 757
+M G I+ +++
Sbjct: 136 HMN--PNGHIITIATSLL 151
Score = 54.5 bits (132), Expect = 3e-08
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF 678
Y+ +K + T+ +++L + I VN +APG + T F
Sbjct: 159 STYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF 198
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 243 bits (623), Expect = 2e-75
Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 13/255 (5%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L GK A+VT S+ GIG IA+ L+ GA++V++ + A+ + + G K
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGF--GDPAPALAEIARHGV-KAVHHPA 58
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
++ + LF AE++FGG+DILV+NA + PV + P WDKI +N+ + F
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQH-VAPVEQFPLESWDKIIALNLSAVFHG 117
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
T+ LP +R RN G I+ ++S+ GL AY +K ++GLTK V + A+ N+ N
Sbjct: 118 TRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCN 177
Query: 559 CLAPGITKT---------KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
+ PG T + A + H++ P P+ +G +V FLCS+
Sbjct: 178 AICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEA 237
Query: 610 ASYITGEVIVAAGGM 624
S + G GG
Sbjct: 238 GSQVRGAAWNVDGGW 252
Score = 192 bits (490), Expect = 2e-56
Identities = 66/189 (34%), Positives = 103/189 (54%), Gaps = 4/189 (2%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L GK A+VT S+ GIG IA+ L+ GA++V++ + A+ + + G K
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGF--GDPAPALAEIARHGV-KAVHHPA 58
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
++ + LF AE++FGG+DILV+NA + PV + P WDKI +N+ + F
Sbjct: 59 DLSDVAQIEALFALAEREFGGVDILVNNAGIQH-VAPVEQFPLESWDKIIALNLSAVFHG 117
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
T+ LP +R RN G I+ ++S+ GL AY +K ++GLTK V + A+ N+ N
Sbjct: 118 TRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCN 177
Query: 190 CLAPGITKT 198
+ PG T
Sbjct: 178 AICPGWVLT 186
Score = 82.2 bits (204), Expect = 1e-17
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
++ +GG+DILV+NA + P+ + WDKI +NL + F T+ LP MR
Sbjct: 69 LFALAEREFGGVDILVNNAGIQHVA-PVEQFPLESWDKIIALNLSAVFHGTRLALPGMRA 127
Query: 744 KKGGSIVYVSSIGG 757
+ G I+ ++S+ G
Sbjct: 128 RNWGRIINIASVHG 141
Score = 55.7 bits (135), Expect = 1e-08
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY +K + GLTKVV + A N+ N + PG + T + I
Sbjct: 150 AYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQID 194
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 243 bits (623), Expect = 3e-75
Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 8/248 (3%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 437
KVA+VT +S GIG AIA RL+++G +VVI+ + K + + ++ G + ++
Sbjct: 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALT-AQ 83
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V+ ++LF AE+ FGG+D+LV+NA + P + E + V+D++ VN+K TF
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMP-LTTIAETGDAVFDRVIAVNLKGTFN 142
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
+E +R GG I+ +S+ G Y+ +K + +T ++++L +I V
Sbjct: 143 TLREAAQRLRV--GGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 558 NCLAPGITKTK-FAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N +APG T T F ++E + P+ RL P ++ G VAFL D +++ G+
Sbjct: 201 NAVAPGPTATDLFLEGK--SDEVRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQ 258
Query: 617 VIVAAGGM 624
V+ A GG+
Sbjct: 259 VLRANGGI 266
Score = 186 bits (476), Expect = 3e-54
Identities = 64/199 (32%), Positives = 109/199 (54%), Gaps = 6/199 (3%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 68
T KVA+VT +S GIG AIA RL+++G +VVI+ + K + + ++ G + ++
Sbjct: 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALT-AQ 83
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V+ ++LF AE+ FGG+D+LV+NA + P + E + V+D++ VN+K TF
Sbjct: 84 ADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMP-LTTIAETGDAVFDRVIAVNLKGTFN 142
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+E +R GG I+ +S+ G Y+ +K + +T ++++L +I V
Sbjct: 143 TLREAAQRLRV--GGRIINMSTSQVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITV 200
Query: 189 NCLAPGITKTK-FAAAKKE 206
N +APG T T F K +
Sbjct: 201 NAVAPGPTATDLFLEGKSD 219
Score = 76.4 bits (189), Expect = 2e-15
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
R+ A + ++ +GG+D+LV+NA + P + E + V+D++ VNLK +F +E
Sbjct: 93 RRLFA--TAEEAFGGVDVLVNNAGIMPLT-TIAETGDAVFDRVIAVNLKGTFNTLREAAQ 149
Query: 740 YMRKKKGGSIVYVSSIGG 757
+R GG I+ +S+
Sbjct: 150 RLR--VGGRIINMSTSQV 165
Score = 57.9 bits (141), Expect = 3e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
G Y+ +K + +T V++++L +I VN +APG T
Sbjct: 173 GIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTAT 210
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 244 bits (626), Expect = 3e-75
Identities = 79/253 (31%), Positives = 124/253 (49%), Gaps = 8/253 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ----KI 433
L G+VA+VT + GIG AI K L G++VVI+SRK + A + LQ ++
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARV 74
Query: 434 SGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVK 493
+ C++ +E+ L + FG I+ LV+N P W + E N+
Sbjct: 75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLT 133
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
TF + + V K +GGSIV + A F L ++ + LTK++A + A
Sbjct: 134 GTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGAARAGVYNLTKSLALEWACS 192
Query: 554 NIRVNCLAPGITKTKFAAALYE--TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
IR+NC+APG+ ++ A Y + E + +P R+ VP+E+ +V FL S AS
Sbjct: 193 GIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAAS 252
Query: 612 YITGEVIVAAGGM 624
+ITG+ + GG
Sbjct: 253 FITGQSVDVDGGR 265
Score = 187 bits (478), Expect = 5e-54
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 6/211 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ----KI 64
L G+VA+VT + GIG AI K L G++VVI+SRK + A + LQ ++
Sbjct: 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARV 74
Query: 65 SGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVK 124
+ C++ +E+ L + FG I+ LV+N P W + E N+
Sbjct: 75 IPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLT 133
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
TF + + V K +GGSIV + A F L ++ + LTK++A + A
Sbjct: 134 GTFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGVYNLTKSLALEWACS 192
Query: 185 NIRVNCLAPGITKTKFAAAKKEVKKKETNDE 215
IR+NC+APG+ ++ A + +
Sbjct: 193 GIRINCVAPGVIYSQTAVENYGSWGQSFFEG 223
Score = 76.5 bits (189), Expect = 2e-15
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ ++ ST +G I+ LV+N + P S W + + NL +F + + V
Sbjct: 88 NNLVK--STLDTFGKINFLVNNGGGQFLS-PAEHISSKGWHAVLETNLTGTFYMCKAVYS 144
Query: 740 YMRKKKGGSIVYVSSIG 756
K+ GGSIV +
Sbjct: 145 SWMKEHGGSIVNIIVPT 161
Score = 53.1 bits (128), Expect = 1e-07
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLS 687
++ ++ LTK +A + A IR+NC+APG+I ++
Sbjct: 167 LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWG 217
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 243 bits (623), Expect = 4e-75
Identities = 70/259 (27%), Positives = 121/259 (46%), Gaps = 7/259 (2%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
+ + +RL KVA++T + GIG AK GA VVI+ + + K +
Sbjct: 6 TPDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD- 64
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV-NPATGPVVECPENVWDKIFE 489
IS V C V K ED + L + K G +DI+ N V + ++E + ++ +
Sbjct: 65 -VISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMD 123
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQ 548
+NV FL+ + + GSIV+ +SI A + Y+ +K A+LGLT ++
Sbjct: 124 INVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCT 183
Query: 549 DLASENIRVNCLAPGITKTKFAAALYETEEAHE---IAVSNVPMGRLAVPDEMGGIVAFL 605
+L IRVNC++P I + ++ + + + G L +++ VA+L
Sbjct: 184 ELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAYL 243
Query: 606 CSDDASYITGEVIVAAGGM 624
D++ Y++G +V GG
Sbjct: 244 AGDESKYVSGLNLVIDGGY 262
Score = 195 bits (498), Expect = 3e-57
Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 4/199 (2%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
+ + +RL KVA++T + GIG AK GA VVI+ + + K +
Sbjct: 6 TPDSSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD- 64
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV-NPATGPVVECPENVWDKIFE 120
IS V C V K ED + L + K G +DI+ N V + ++E + ++ +
Sbjct: 65 -VISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMD 123
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQ 179
+NV FL+ + + GSIV+ +SI A + Y+ +K A+LGLT ++
Sbjct: 124 INVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSLCT 183
Query: 180 DLASENIRVNCLAPGITKT 198
+L IRVNC++P I +
Sbjct: 184 ELGEYGIRVNCVSPYIVAS 202
Score = 80.3 bits (199), Expect = 8e-17
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAV-NPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIV 750
+G +DI+ N V + ++E + ++ D+N+ +FL+ + M K GSIV
Sbjct: 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIV 149
Query: 751 YVSSIGGF 758
+ +SI F
Sbjct: 150 FTASISSF 157
Score = 61.8 bits (151), Expect = 1e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAM 685
Y+ +K A+ GLT + +L IRVNC++P ++ + + +
Sbjct: 166 VYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV 211
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 242 bits (621), Expect = 4e-75
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 13/249 (5%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
A+VT G A RLS G +V K + L+
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESF----KQKDELEAFAET---YPQLKPM 54
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
+++ +L E +G +D+LVSN P P+ + + E F L
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 114
Query: 502 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 561
V ++KR G I++++S P+K L Y+ ++ L A++++L NI V +
Sbjct: 115 VASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIG 174
Query: 562 PGITKTKFAAALYE------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
P ++ + Y E + RL E+G +VAFL S Y+TG
Sbjct: 175 PNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTG 234
Query: 616 EVIVAAGGM 624
+V AGG
Sbjct: 235 QVFWLAGGF 243
Score = 188 bits (479), Expect = 8e-55
Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 7/203 (3%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
A+VT G A RLS G +V K + L+
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESF----KQKDELEAFAET---YPQLKPM 54
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
+++ +L E +G +D+LVSN P P+ + + E F L
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNA 114
Query: 133 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 192
V ++KR G I++++S P+K L Y+ ++ L A++++L NI V +
Sbjct: 115 VASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIG 174
Query: 193 PGITKTKFAAAKKEVKKKETNDE 215
P ++ + + +TN E
Sbjct: 175 PNYLHSEDSPYFYPTEPWKTNPE 197
Score = 85.3 bits (212), Expect = 1e-18
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+I + YG +D+LVSN P +P+ + + + + F L V
Sbjct: 60 AELIE--AVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVAS 117
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M+K+K G I++++S F
Sbjct: 118 QMKKRKSGHIIFITSATPF 136
Score = 55.3 bits (134), Expect = 1e-08
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ ++ L ++++L NI V + P + +
Sbjct: 144 TYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHS 180
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 242 bits (619), Expect = 5e-75
Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 18/246 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
+ K +V A+S GIG A+A LS EGA V I +R E E L++ GH+ VVC
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHR---YVVC 66
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
D +K + +K +DILV NA A G E + + + + +
Sbjct: 67 ------DLRKDLDLLFEKVKEVDILVLNAGGPKA-GFFDELTNEDFKEAIDSLFLNMIKI 119
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
+ LP ++++ G IV ++S ++P + L + ++ AL G K ++ ++A I VN
Sbjct: 120 VRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVN 179
Query: 559 CLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI 618
C+APG T+T+ L EE + S +PM R+A P+E+ +VAFLCS+ ASY+TG+ I
Sbjct: 180 CVAPGWTETERVKELLS-EEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTI 238
Query: 619 VAAGGM 624
V GG+
Sbjct: 239 VVDGGL 244
Score = 183 bits (466), Expect = 5e-53
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
+ K +V A+S GIG A+A LS EGA V I +R E E L++ GH+ VVC
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHR---YVVC 66
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
D +K + +K +DILV NA A G E + + + + +
Sbjct: 67 ------DLRKDLDLLFEKVKEVDILVLNAGGPKA-GFFDELTNEDFKEAIDSLFLNMIKI 119
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
+ LP ++++ G IV ++S ++P + L + ++ AL G K ++ ++A I VN
Sbjct: 120 VRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVN 179
Query: 190 CLAPGITKT 198
C+APG T+T
Sbjct: 180 CVAPGWTET 188
Score = 78.4 bits (194), Expect = 2e-16
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+DILV NA A E + + + D + + + LP M++K G IV
Sbjct: 79 VKEVDILVLNAGGPKAG-FFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVA 137
Query: 752 VSSIGG 757
++S
Sbjct: 138 ITSFSV 143
Score = 53.7 bits (130), Expect = 5e-08
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLS 687
+ ++ AL G K ++ ++AP I VNC+APG T +R+ +LS
Sbjct: 153 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTET---ERVKELLS 196
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 242 bits (620), Expect = 6e-75
Identities = 76/247 (30%), Positives = 118/247 (47%), Gaps = 12/247 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL GKVA+V+ + G+G + + + EGA VV + L V
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADA-ARYVH 59
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V + + + A FGG+ +LV+NA + G + + W +I +VN+ FL
Sbjct: 60 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL-NIGTIEDYALTEWQRILDVNLTGVFL 118
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
+ V+ +++ GSI+ +SSI GLA Y+ +K A+ GLTK+ A +L IRV
Sbjct: 119 GIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRV 178
Query: 558 NCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEV 617
N + PG+ KT + E + +GR A P E+ +V +L SD++SY TG
Sbjct: 179 NSIHPGLVKTPMTDWVPE-------DIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAE 231
Query: 618 IVAAGGM 624
V GG
Sbjct: 232 FVVDGGT 238
Score = 192 bits (491), Expect = 2e-56
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 5/190 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RLTGKVA+V+ + G+G + + + AEGA VV + L V
Sbjct: 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADA-ARYVH 59
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V + + + A FGG+ +LV+NA + G + + W +I +VN+ FL
Sbjct: 60 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL-NIGTIEDYALTEWQRILDVNLTGVFL 118
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+ V+ +++ GSI+ +SSI GLA Y+ +K A+ GLTK+ A +L IRV
Sbjct: 119 GIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRV 178
Query: 189 NCLAPGITKT 198
N + PG+ KT
Sbjct: 179 NSIHPGLVKT 188
Score = 79.1 bits (196), Expect = 2e-16
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+GG+ +LV+NA + + + + W +I DVNL FL + V+ M++ GSI+
Sbjct: 79 FGGLHVLVNNAGILNIG-TIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIIN 137
Query: 752 VSSIGGF 758
+SSI G
Sbjct: 138 ISSIEGL 144
Score = 60.6 bits (148), Expect = 3e-10
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLS 687
Y+ +K A+ GLTK A +L P IRVN + PGL++T D + +
Sbjct: 152 GYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIF 199
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 242 bits (620), Expect = 8e-75
Identities = 82/248 (33%), Positives = 141/248 (56%), Gaps = 2/248 (0%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L G+VA+VT S G+GF IA+ L+ G SVV++SR ++A + L ++ +
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
C V+ E+ +KL E ++KFG +D +V+ A +N P E P + + ++ EVN+ T+
Sbjct: 78 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRH-PAEEFPLDEFRQVIEVNLFGTYY 136
Query: 498 LTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+ +E +R+ + SI+ + S+ + AY+ SK + LTKA+A++ IR
Sbjct: 137 VCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIR 196
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
VN +APG +TK A++ E + + +P+GR VP+++ G+ FL S++A Y+TG+
Sbjct: 197 VNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQ 256
Query: 617 VIVAAGGM 624
+I GG
Sbjct: 257 IIFVDGGW 264
Score = 187 bits (478), Expect = 2e-54
Identities = 65/196 (33%), Positives = 109/196 (55%), Gaps = 2/196 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G+VA+VT S G+GF IA+ L+ G SVV++SR ++A + L ++ +
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C V+ E+ +KL E ++KFG +D +V+ A +N P E P + + ++ EVN+ T+
Sbjct: 78 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRH-PAEEFPLDEFRQVIEVNLFGTYY 136
Query: 129 LTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ +E +R+ + SI+ + S+ + AY+ SK + LTKA+A++ IR
Sbjct: 137 VCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIR 196
Query: 188 VNCLAPGITKTKFAAA 203
VN +APG +TK A
Sbjct: 197 VNVIAPGWYRTKMTEA 212
Score = 77.9 bits (193), Expect = 4e-16
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+++ + + +G +D +V+ A +N + P E + ++ +VNL ++ + +E
Sbjct: 87 KKLLE--AVKEKFGKLDTVVNAAGINRRH-PAEEFPLDEFRQVIEVNLFGTYYVCREAFS 143
Query: 740 YMRKKKGGSIVYVSSIGGF 758
+R+ SI+ + S+
Sbjct: 144 LLRESDNPSIINIGSLTVE 162
Score = 55.2 bits (134), Expect = 2e-08
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
I AY+ SK + LTK +A++ IRVN +APG RT
Sbjct: 169 ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRT 207
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 242 bits (621), Expect = 9e-75
Identities = 73/250 (29%), Positives = 126/250 (50%), Gaps = 8/250 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L+GK A++T +S GIG +A + GA V +++R + + + G K +
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIR 87
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
C V + + + + + + GGIDI V NA + + +++ P + +I + NV FL
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIV-SVQAMLDMPLEEFQRIQDTNVTGVFL 146
Query: 498 LTQEVLPYIRKR-NGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
Q + + GG+I+ +S+ G + + Y SK A++ LTKA+A +LA
Sbjct: 147 TAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQ 206
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
IRVN ++PG +T+ L + +P+GR+ P+E+ G+ +L S +SY+T
Sbjct: 207 IRVNSVSPGYIRTELVEPLADYHAL---WEPKIPLGRMGRPEELTGLYLYLASAASSYMT 263
Query: 615 GEVIVAAGGM 624
G IV GG
Sbjct: 264 GSDIVIDGGY 273
Score = 191 bits (488), Expect = 1e-55
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 5/205 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L+GK A++T +S GIG +A + GA V +++R + + + G K +
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGG-KALPIR 87
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C V + + + + + + GGIDI V NA + + +++ P + +I + NV FL
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIV-SVQAMLDMPLEEFQRIQDTNVTGVFL 146
Query: 129 LTQEVLPYIRKR-NGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
Q + + GG+I+ +S+ G + + Y SK A++ LTKA+A +LA
Sbjct: 147 TAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQ 206
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKK 210
IRVN ++PG +T+ +
Sbjct: 207 IRVNSVSPGYIRTELVEPLADYHAL 231
Score = 75.3 bits (186), Expect = 4e-15
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
M+ GGIDI V NA + + + +++ + +I D N+ FL Q
Sbjct: 97 RGMLD--QMTGELGGIDIAVCNAGIV-SVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAAR 153
Query: 740 YMRK-KKGGSIVYVSSIGGF 758
M GG+I+ +S+ G
Sbjct: 154 AMVDQGLGGTIITTASMSGH 173
Score = 56.0 bits (136), Expect = 1e-08
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTK 677
Y SK A+ LTK +A +LAP IRVN ++PG IRT+
Sbjct: 183 HYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTE 220
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 242 bits (619), Expect = 1e-74
Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 22/273 (8%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAV 422
++ T I RL GKVA+VT S GIG A+A L GA VV++ + + K V
Sbjct: 7 ASETYIPG------RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVV 60
Query: 423 ETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPEN 482
++ G I+ + + + + KLF+ A FG +DI VSN+ V G + + E
Sbjct: 61 SEIKALGSDAIA-IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVS-FGHLKDVTEE 118
Query: 483 VWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLG 541
+D++F +N + F + +E ++ + GG IV SS YS SK A+
Sbjct: 119 EFDRVFSLNTRGQFFVAREAYRHLTE--GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDS 176
Query: 542 LTKAVAQDLASENIRVNCLAPGITKT----------KFAAALYETEEAHEIAVSNVPMGR 591
+ ++D + I VN +APG T T Y E+ ++A P+ R
Sbjct: 177 FVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHR 236
Query: 592 LAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
P ++ +V FL S + ++ G+V+ GG
Sbjct: 237 NGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269
Score = 186 bits (475), Expect = 5e-54
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
RL GKVA+VT S GIG A+A L GA VV++ + + K V ++ G I+
Sbjct: 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIA- 72
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ + + + KLF+ A FG +DI VSN+ V G + + E +D++F +N +
Sbjct: 73 IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVS-FGHLKDVTEEEFDRVFSLNTRGQ 131
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
F + +E ++ + GG IV SS YS SK A+ + ++D +
Sbjct: 132 FFVAREAYRHLTE--GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKK 189
Query: 186 IRVNCLAPGITKT 198
I VN +APG T T
Sbjct: 190 ITVNAVAPGGTVT 202
Score = 75.3 bits (186), Expect = 3e-15
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ +G +DI VSN+ V L + +E +D++F +N + F + +E
Sbjct: 84 VKLFD--QAVAHFGHLDIAVSNSGVVSFG-HLKDVTEEEFDRVFSLNTRGQFFVAREAYR 140
Query: 740 YMRKKKGGSIVYVSSIGG 757
++ +GG IV SS
Sbjct: 141 HLT--EGGRIVLTSSNTS 156
Score = 56.1 bits (136), Expect = 9e-09
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK A+ ++ ++D + I VN +APG T
Sbjct: 165 SLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVT 202
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 240 bits (616), Expect = 2e-74
Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 11/253 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
+RL GKVA+VT + G+G + K L EGA V S E+ + L G + + V
Sbjct: 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSM-FV 57
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V+ + D + +++ G +++LV+NA + G + + ++ ++N +S F
Sbjct: 58 RHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTESVF 116
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN-- 554
+ Q+ + +++ GGSI+ ++S+ P + YS SK A+ LT+A A +
Sbjct: 117 IGCQQGIAAMKE-TGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYA 175
Query: 555 IRVNCLAPGITKTKFAAALY---ETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
IRVN + P T A ++E GR +P+ + +V FL SD++S
Sbjct: 176 IRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESS 235
Query: 612 YITGEVIVAAGGM 624
++G + A +
Sbjct: 236 VMSGSELHADNSI 248
Score = 188 bits (481), Expect = 5e-55
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
+RL GKVA+VT + G+G + K L EGA V S E+ + L G + + V
Sbjct: 2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---GERSM-FV 57
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V+ + D + +++ G +++LV+NA + G + + ++ ++N +S F
Sbjct: 58 RHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTESVF 116
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN-- 185
+ Q+ + +++ GGSI+ ++S+ P + YS SK A+ LT+A A +
Sbjct: 117 IGCQQGIAAMKE-TGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYA 175
Query: 186 IRVNCLAPGITKT 198
IRVN + P T
Sbjct: 176 IRVNSIHPDGIYT 188
Score = 78.7 bits (195), Expect = 2e-16
Identities = 16/79 (20%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++A + + G +++LV+NA + + + ++ +N +S F+ Q+ +
Sbjct: 68 TLVMA--AVQRRLGTLNVLVNNAGILLPG-DMETGRLEDFSRLLKINTESVFIGCQQGIA 124
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M+ + GGSI+ ++S+ +
Sbjct: 125 AMK-ETGGSIINMASVSSW 142
Score = 55.6 bits (135), Expect = 1e-08
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPEN--IRVNCLAPGLIRTKFGDRMIA 684
YS SK A+ LT+ A + IRVN + P I T +
Sbjct: 150 GYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP 196
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 240 bits (616), Expect = 3e-74
Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 11/256 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRK-ESNVNKAVETLQKEGHQKISG 435
L GK ++T SS GIG A A+ + GA V + RK +N+++ + +++ +G
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAA-F 61
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+A E Q+L + KFGGID+L++NA P+ E + +D + + N++S
Sbjct: 62 FAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSV 121
Query: 496 FLLTQEVLPYIRKR-----NGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQD 549
+ T+ LP++ +++ SI G G Y +K L + K
Sbjct: 122 VMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDF 181
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
+ +R N ++PG T F A T++ + + +PMGR +EM F S
Sbjct: 182 HTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIPMGRFGTAEEMAPAFLFFASHL 239
Query: 610 AS-YITGEVIVAAGGM 624
AS YITG+V+ GG
Sbjct: 240 ASGYITGQVLDINGGQ 255
Score = 188 bits (479), Expect = 1e-54
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRK-ESNVNKAVETLQKEGHQKISG 66
L GK ++T SS GIG A A+ + GA V + RK +N+++ + +++ +G
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAA-F 61
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+A E Q+L + KFGGID+L++NA P+ E + +D + + N++S
Sbjct: 62 FAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSV 121
Query: 127 FLLTQEVLPYIRKR-----NGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQD 180
+ T+ LP++ +++ SI G G Y +K L + K
Sbjct: 122 VMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAKAFLHNVHKNWVDF 181
Query: 181 LASENIRVNCLAPGITKTKFAAAKKEVKKKE 211
+ +R N ++PG T F A K + +
Sbjct: 182 HTKDGVRFNIVSPGTVDTAFHADKTQDVRDR 212
Score = 77.2 bits (191), Expect = 7e-16
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+++ +GGID+L++NA +PL E + +D + D N++S + T+ LP
Sbjct: 73 QQLVD--EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALP 130
Query: 740 YMRKK-----KGGSIVYVSSIGGF 758
++ + +++ SI G
Sbjct: 131 HLAAAAKASGQTSAVISTGSIAGH 154
Score = 57.9 bits (141), Expect = 2e-09
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
G Y +K L + K + + +R N ++PG + T F
Sbjct: 162 GLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK 205
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 240 bits (614), Expect = 4e-74
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 7/250 (2%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
R + VV + IG A A R + EGA+VV++ + AV ++K G +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSAL-A 62
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ + + + A KFG I LV A A + E E W ++ +VN+ S
Sbjct: 63 IKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSL 122
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
FL + LP + K GG+IV SS G AY+ SK A++ T+ +A+++
Sbjct: 123 FLTAKTALPKMAK--GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-K 179
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
IRVN + PG+ T F + E +A + R +++ G+VAFL SDDA+Y+T
Sbjct: 180 IRVNAVCPGMISTTFHDTFTKPEVRERVA-GATSLKREGSSEDVAGLVAFLASDDAAYVT 238
Query: 615 GEVIVAAGGM 624
G GG+
Sbjct: 239 GACYDINGGV 248
Score = 185 bits (471), Expect = 1e-53
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 6/206 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
R T + VV + IG A A R + EGA+VV++ + AV ++K G +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSAL-A 62
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ + + + A KFG I LV A A + E E W ++ +VN+ S
Sbjct: 63 IKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSL 122
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
FL + LP + K GG+IV SS G AY+ SK A++ T+ +A+++
Sbjct: 123 FLTAKTALPKMAK--GGAIVTFSSQAGRDGGGPGALAYATSKGAVMTFTRGLAKEVGP-K 179
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKE 211
IRVN + PG+ T F + + +E
Sbjct: 180 IRVNAVCPGMISTTFHDTFTKPEVRE 205
Score = 81.0 bits (201), Expect = 4e-17
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ I+ + +G I LV A A + + E E W ++ DVNL S FL + LP
Sbjct: 74 EAAIS--AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALP 131
Query: 740 YMRKKKGGSIVYVSSIGG 757
M KGG+IV SS G
Sbjct: 132 KMA--KGGAIVTFSSQAG 147
Score = 52.5 bits (127), Expect = 1e-07
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
AY+ SK A+ T+ +A+++ P IRVN + PG+I T + ++
Sbjct: 157 AYATSKGAVMTFTRGLAKEVGP-KIRVNAVCPGMISTT----FHDTFTKPEV 203
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 240 bits (614), Expect = 6e-74
Identities = 77/262 (29%), Positives = 126/262 (48%), Gaps = 9/262 (3%)
Query: 365 TSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVE 423
T + + + LAGK A VT S GIG AIAKRL+ EGA+V ++ V
Sbjct: 15 TENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVS 74
Query: 424 TLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV 483
+++ G + ++ + E ++ + GG+DILV++A + + P+ E
Sbjct: 75 EIEQAGGRAVA-IRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWH-SAPLEETTVAD 132
Query: 484 WDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSS-IGGLAPFKLLGAYSVSKTALLGL 542
+D++ VN ++ F+ + ++ GG I+ + S + L P+ + YS SK AL GL
Sbjct: 133 FDEVMAVNFRAPFVAIRSASRHLGD--GGRIITIGSNLAELVPWPGISLYSASKAALAGL 190
Query: 543 TKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIV 602
TK +A+DL I VN + PG T T A + EA + G P ++ G+V
Sbjct: 191 TKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEA---QRERIATGSYGEPQDIAGLV 247
Query: 603 AFLCSDDASYITGEVIVAAGGM 624
A+L ++TG + GG
Sbjct: 248 AWLAGPQGKFVTGASLTIDGGA 269
Score = 185 bits (473), Expect = 9e-54
Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 6/207 (2%)
Query: 6 NASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKI 64
+ L GK A VT S GIG AIAKRL+ EGA+V ++ V +++ G + +
Sbjct: 25 TSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAV 84
Query: 65 SGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVK 124
+ + E ++ + GG+DILV++A + + P+ E +D++ VN +
Sbjct: 85 A-IRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWH-SAPLEETTVADFDEVMAVNFR 142
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSS-IGGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS 183
+ F+ + ++ GG I+ + S + L P+ + YS SK AL GLTK +A+DL
Sbjct: 143 APFVAIRSASRHLGD--GGRIITIGSNLAELVPWPGISLYSASKAALAGLTKGLARDLGP 200
Query: 184 ENIRVNCLAPGITKTKFAAAKKEVKKK 210
I VN + PG T T A + +
Sbjct: 201 RGITVNIVHPGSTDTDMNPADGDHAEA 227
Score = 75.3 bits (186), Expect = 4e-15
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ I T + GG+DILV++A + + PL E + +D++ VN ++ F+ +
Sbjct: 97 EQAIR--ETVEALGGLDILVNSAGIWHSA-PLEETTVADFDEVMAVNFRAPFVAIRSASR 153
Query: 740 YMRKKKGGSIVYVSS 754
++ GG I+ + S
Sbjct: 154 HLG--DGGRIITIGS 166
Score = 56.8 bits (138), Expect = 6e-09
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK AL GLTK +A DL P I VN + PG T
Sbjct: 178 SLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDT 215
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 239 bits (612), Expect = 1e-73
Identities = 81/252 (32%), Positives = 119/252 (47%), Gaps = 12/252 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L G+ VVT + GIG IA + GA+V ++ R ++++ V L + G K+ GV
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V+ + L A ++FGGID++ +NA V P P+ + IF VNV TF
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPD-APLATMTPEQLNGIFAVNVNGTFY 125
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLAS 552
Q L + G +V SSI G + G Y +K A LG + A +LA
Sbjct: 126 AVQACLDALIASGSGRVVLTSSITG----PITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
Query: 553 ENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
I VN + PG T+ EE ++P G L P+++G + AFL + +A Y
Sbjct: 182 HKITVNAIMPGNIMTEGLLEN--GEEYIASMARSIPAGALGTPEDIGHLAAFLATKEAGY 239
Query: 613 ITGEVIVAAGGM 624
ITG+ I GG
Sbjct: 240 ITGQAIAVDGGQ 251
Score = 182 bits (465), Expect = 9e-53
Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G+ VVT + GIG IA + GA+V ++ R ++++ V L + G K+ GV
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQ 66
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V+ + L A ++FGGID++ +NA V P P+ + IF VNV TF
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPD-APLATMTPEQLNGIFAVNVNGTFY 125
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLAS 183
Q L + G +V SSI G + G Y +K A LG + A +LA
Sbjct: 126 AVQACLDALIASGSGRVVLTSSITG----PITGYPGWSHYGATKAAQLGFMRTAAIELAP 181
Query: 184 ENIRVNCLAPGITKT 198
I VN + PG T
Sbjct: 182 HKITVNAIMPGNIMT 196
Score = 78.8 bits (195), Expect = 3e-16
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D + + +GGID++ +NA V P PL + + IF VN+ +F Q L
Sbjct: 76 DALAG--RAVEEFGGIDVVCANAGVFPDA-PLATMTPEQLNGIFAVNVNGTFYAVQACLD 132
Query: 740 YMRKKKGGSIVYVSSIGG 757
+ G +V SSI G
Sbjct: 133 ALIASGSGRVVLTSSITG 150
Score = 52.6 bits (127), Expect = 1e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y +K A G + A +LAP I VN + PG I T
Sbjct: 161 YGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMT 196
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 239 bits (612), Expect = 2e-73
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 17/274 (6%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAV 422
++ L GKVA+VT + GIG +A L G V+++ + + + V
Sbjct: 12 KYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVV 71
Query: 423 ETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPEN 482
++K G V +V ED ++FE A K FG +DI+ SN+ V G V +
Sbjct: 72 AAIKKNGSDAAC-VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPE 129
Query: 483 VWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLG 541
+D++F +N + F + +E ++ GG ++ + SI G YS SK A+
Sbjct: 130 EFDRVFTINTRGQFFVAREAYKHLEI--GGRLILMGSITGQAKAVPKHAVYSGSKGAIET 187
Query: 542 LTKAVAQDLASENIRVNCLAPGITKT-----------KFAAALYETEEAHEIAVSNVPMG 590
+ +A D+A + I VN +APG KT L E AV P+
Sbjct: 188 FARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLR 247
Query: 591 RLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
R+ +P ++ +V FL S+D ++TG+VI GG
Sbjct: 248 RVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281
Score = 186 bits (474), Expect = 9e-54
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKE 59
++ L GKVA+VT + GIG +A L G V+++ + + + V ++K
Sbjct: 18 GPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN 77
Query: 60 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 119
G V +V ED ++FE A K FG +DI+ SN+ V G V + +D++F
Sbjct: 78 GSDAAC-VKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPEEFDRVF 135
Query: 120 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVA 178
+N + F + +E ++ GG ++ + SI G YS SK A+ + +A
Sbjct: 136 TINTRGQFFVAREAYKHLEI--GGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMA 193
Query: 179 QDLASENIRVNCLAPGITKT 198
D+A + I VN +APG KT
Sbjct: 194 IDMADKKITVNVVAPGGIKT 213
Score = 75.7 bits (187), Expect = 3e-15
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
RM K++G +DI+ SN+ V + + + +D++F +N + F + +E
Sbjct: 95 VRMFE--EAVKIFGKLDIVCSNSGVVSFG-HVKDVTPEEFDRVFTINTRGQFFVAREAYK 151
Query: 740 YMRKKKGGSIVYVSSIGG 757
++ GG ++ + SI G
Sbjct: 152 HLE--IGGRLILMGSITG 167
Score = 56.9 bits (138), Expect = 6e-09
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK A+ + +A D+A + I VN +APG I+T
Sbjct: 176 AVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKT 213
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 238 bits (609), Expect = 2e-73
Identities = 72/255 (28%), Positives = 114/255 (44%), Gaps = 20/255 (7%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+GK VT + GIG+A A GA V + + + + V
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------QEQYPFATEV 52
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
VA ++ + + +D LV+ A + G + + W + F VNV F
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGIL-RMGATDQLSKEDWQQTFAVNVGGAFN 111
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
L Q+ + R++ GG+IV V+S P + AY SK AL L +V +LA +R
Sbjct: 112 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 171
Query: 558 NCLAPGITKTKFAAALYETEEAHEIAV--------SNVPMGRLAVPDEMGGIVAFLCSDD 609
N ++PG T T L+ +++A E + +P+G++A P E+ + FL SD
Sbjct: 172 NVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDL 231
Query: 610 ASYITGEVIVAAGGM 624
AS+IT + IV GG
Sbjct: 232 ASHITLQDIVVDGGS 246
Score = 184 bits (470), Expect = 1e-53
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+GK VT + GIG+A A GA V + + + + V
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------QEQYPFATEV 52
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
VA ++ + + +D LV+ A + G + + W + F VNV F
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGIL-RMGATDQLSKEDWQQTFAVNVGGAFN 111
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
L Q+ + R++ GG+IV V+S P + AY SK AL L +V +LA +R
Sbjct: 112 LFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRC 171
Query: 189 NCLAPGITKT 198
N ++PG T T
Sbjct: 172 NVVSPGSTDT 181
Score = 80.7 bits (200), Expect = 4e-17
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+D LV+ A + + S+ W + F VN+ +F L Q+ + R+++GG+IV
Sbjct: 72 TERLDALVNAAGILRMG-ATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVT 130
Query: 752 VSSIGG 757
V+S
Sbjct: 131 VASDAA 136
Score = 57.2 bits (139), Expect = 4e-09
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTD 689
AY SK AL L V +LA +R N ++PG T M L
Sbjct: 145 AYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTD----MQRTLWVS 190
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 238 bits (609), Expect = 3e-73
Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 17/274 (6%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAV 422
S + + LAGKVA+ T + GIG IA L GASVV++ + V
Sbjct: 4 SADITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV 63
Query: 423 ETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPEN 482
L+K G Q ++ + ++K + LF+ A FGG+D ++SN+ + +E +
Sbjct: 64 AELKKLGAQGVA-IQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQE 121
Query: 483 VWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLG 541
++DK+F +N + F + Q+ L + R+ GG I+ SSI + Y+ SK A+ G
Sbjct: 122 LFDKVFNLNTRGQFFVAQQGLKHCRR--GGRIILTSSIAAVMTGIPNHALYAGSKAAVEG 179
Query: 542 LTKAVAQDLASENIRVNCLAPGITKT-----------KFAAALYETEEAHEIAVSNVPMG 590
+A A D ++ + VNC+APG KT E+ E + P+
Sbjct: 180 FCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK 239
Query: 591 RLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
R+ P ++G V+ LC +++ +I G+VI GG
Sbjct: 240 RIGYPADIGRAVSALCQEESEWINGQVIKLTGGG 273
Score = 183 bits (468), Expect = 6e-53
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 6/199 (3%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEG 60
+ + L GKVA+ T + GIG IA L GASVV++ + V L+K G
Sbjct: 11 GPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG 70
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
Q ++ + ++K + LF+ A FGG+D ++SN+ + +E + ++DK+F
Sbjct: 71 AQGVA-IQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQELFDKVFN 128
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQ 179
+N + F + Q+ L + R+ GG I+ SSI + Y+ SK A+ G +A A
Sbjct: 129 LNTRGQFFVAQQGLKHCRR--GGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAV 186
Query: 180 DLASENIRVNCLAPGITKT 198
D ++ + VNC+APG KT
Sbjct: 187 DCGAKGVTVNCIAPGGVKT 205
Score = 76.1 bits (188), Expect = 2e-15
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ +GG+D ++SN+ + +E ++ ++DK+F++N + F + Q+ L
Sbjct: 87 VALFD--KAVSHFGGLDFVMSNSGMEVWC-DELEVTQELFDKVFNLNTRGQFFVAQQGLK 143
Query: 740 YMRKKKGGSIVYVSSIGG 757
+ R +GG I+ SSI
Sbjct: 144 HCR--RGGRIILTSSIAA 159
Score = 56.5 bits (137), Expect = 7e-09
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK A+ G + A D + + VNC+APG ++T
Sbjct: 168 ALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKT 205
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 237 bits (606), Expect = 7e-73
Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
S L GKVA+VT +S GIG AIAKRL+ +GA V I ++ + V +Q G S
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS- 61
Query: 436 VVCHVAKKEDRQKLFEHAEKKF------GGIDILVSNAAVNPATGPVVECPENVWDKIFE 489
+ ++ + L+ + + DIL++NA + P + E E +D++
Sbjct: 62 IGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVS 120
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
VN K+ F + Q+ L +R I+ +SS AYS++K A+ +T +A+
Sbjct: 121 VNAKAPFFIIQQALSRLRD--NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQ 178
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
L + I VN + PG KT A L + A + RL +++ AFL S D
Sbjct: 179 LGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPD 238
Query: 610 ASYITGEVIVAAGGM 624
+ ++TG++I +GG
Sbjct: 239 SRWVTGQLIDVSGGS 253
Score = 174 bits (444), Expect = 8e-50
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 11/206 (5%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
S L GKVA+VT +S GIG AIAKRL+ +GA V I ++ + V +Q G S
Sbjct: 3 SMLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS- 61
Query: 67 VVCHVAKKEDRQKLFEHAEKKF------GGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
+ ++ + L+ + + DIL++NA + P + E E +D++
Sbjct: 62 IGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVS 120
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
VN K+ F + Q+ L +R I+ +SS AYS++K A+ +T +A+
Sbjct: 121 VNAKAPFFIIQQALSRLRD--NSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQ 178
Query: 181 LASENIRVNCLAPGITKTKFAAAKKE 206
L + I VN + PG KT A
Sbjct: 179 LGARGITVNAILPGFVKTDMNAELLS 204
Score = 77.2 bits (191), Expect = 6e-16
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 677 KFGDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQE 736
+ L DIL++NA + P + E +E +D++ VN K+ F + Q+
Sbjct: 74 ALYSSLDNELQNRTGSTKFDILINNAGIGPGA-FIEETTEQFFDRMVSVNAKAPFFIIQQ 132
Query: 737 VLPYMRKKKGGSIVYVSSIGG 757
L +R I+ +SS
Sbjct: 133 ALSRLR--DNSRIINISSAAT 151
Score = 56.8 bits (138), Expect = 5e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AYS++K A+ +T +A+ L I VN + PG ++T +++
Sbjct: 159 IAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS 204
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 236 bits (605), Expect = 8e-73
Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 12/257 (4%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISS-RKESNVNKAVETLQKEGHQKISGVV 437
L GKVAVVT S+ GIG IA L+ +GA +V++ + + K L + K+
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
++K E + L ++A ++ G IDILV+NA + T + + P WD I +N+ + F
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ-HTALIEDFPTEKWDAILALNLSAVFH 120
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
T LP+++K+ G I+ ++S GL AY +K ++G TK A + A + I
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 558 NCLAPGITKT----------KFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
N + PG +T + + A E+ P + P+++GG FL S
Sbjct: 181 NAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLAS 240
Query: 608 DDASYITGEVIVAAGGM 624
D A+ ITG + GG
Sbjct: 241 DAAAQITGTTVSVDGGW 257
Score = 189 bits (482), Expect = 3e-55
Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISS-RKESNVNKAVETLQKEGHQKISGVV 68
L GKVAVVT S+ GIG IA L+A+GA +V++ + + K L + K+
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
++K E + L ++A ++ G IDILV+NA + T + + P WD I +N+ + F
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ-HTALIEDFPTEKWDAILALNLSAVFH 120
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
T LP+++K+ G I+ ++S GL AY +K ++G TK A + A + I
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITA 180
Query: 189 NCLAPGITKT 198
N + PG +T
Sbjct: 181 NAICPGWVRT 190
Score = 81.9 bits (203), Expect = 2e-17
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ + + G IDILV+NA + + + WD I +NL + F T LP
Sbjct: 71 RGLVD--NAVRQMGRIDILVNNAGIQHTA-LIEDFPTEKWDAILALNLSAVFHGTAAALP 127
Query: 740 YMRKKKGGSIVYVSSIGGF 758
+M+K+ G I+ ++S G
Sbjct: 128 HMKKQGFGRIINIASAHGL 146
Score = 56.5 bits (137), Expect = 6e-09
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
AY +K + G TKV A + A + I N + PG +RT ++ I+
Sbjct: 154 AYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQIS 198
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 235 bits (602), Expect = 1e-72
Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+ A+VT S GIG AIA+ L G V I+SR +++ + + +
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAV---------PLPTDLE 53
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
K +D + L + A + GG+ +LV AAVN P +E W ++ +++ FLL Q
Sbjct: 54 K-DDPKGLVKRALEALGGLHVLVHAAAVN-VRKPALELSYEEWRRVLYLHLDVAFLLAQA 111
Query: 502 VLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENIRVNC 559
P++ + G ++++ S+ + AY+ +KTALLGLT+A+A++ A IRVN
Sbjct: 112 AAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNL 171
Query: 560 LAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVIV 619
L PG +T+F L + E +E + +PMGR A P+E+ + A LC D+A Y+TG+ +
Sbjct: 172 LCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQAVA 231
Query: 620 AAGGM 624
GG
Sbjct: 232 VDGGF 236
Score = 172 bits (439), Expect = 2e-49
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 13/193 (6%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+ A+VT S GIG AIA+ L A G V I+SR +++ + + +
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAV---------PLPTDLE 53
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
K +D + L + A + GG+ +LV AAVN P +E W ++ +++ FLL Q
Sbjct: 54 K-DDPKGLVKRALEALGGLHVLVHAAAVN-VRKPALELSYEEWRRVLYLHLDVAFLLAQA 111
Query: 133 VLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLASENIRVNC 190
P++ + G ++++ S+ + AY+ +KTALLGLT+A+A++ A IRVN
Sbjct: 112 AAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNL 171
Query: 191 LAPGITKTKFAAA 203
L PG +T+F
Sbjct: 172 LCPGYVETEFTLP 184
Score = 80.2 bits (199), Expect = 4e-17
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
++ + GG+ +LV AAVN +P +E S W ++ ++L +FLL Q P
Sbjct: 58 KGLVK--RALEALGGLHVLVHAAAVN-VRKPALELSYEEWRRVLYLHLDVAFLLAQAAAP 114
Query: 740 YMRKKKGGSIVYVSSIGGF 758
+M + G ++++ S+ F
Sbjct: 115 HMAEAGWGRVLFIGSVTTF 133
Score = 56.7 bits (138), Expect = 4e-09
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ +KTAL GLT+ +A++ A IRVN L PG + T
Sbjct: 143 AYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVET 179
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 235 bits (602), Expect = 4e-72
Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 4/261 (1%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVE 423
T + LAG+ AVVT + GIG AIA + GA V+ R + V + +
Sbjct: 14 GTENLYFQSMTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVAD 72
Query: 424 TLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV 483
+ G VV +A E + E +D+LV+NA + A P E
Sbjct: 73 EIADGGG-SAEAVVADLADLEGAANVAEELAA-TRRVDVLVNNAGII-ARAPAEEVSLGR 129
Query: 484 WDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
W ++ VN+ + ++L++ + G IV ++S+ + + AY+ SK A++GLT
Sbjct: 130 WREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLT 189
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVA 603
+A+A + A + VN LAPG T AAL +E + +P GR A P++M G
Sbjct: 190 RALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATPEDMVGPAV 249
Query: 604 FLCSDDASYITGEVIVAAGGM 624
FL SD ASY+ G+V+ GG
Sbjct: 250 FLASDAASYVHGQVLAVDGGW 270
Score = 182 bits (464), Expect = 2e-52
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 4/195 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L G+ AVVT + GIG AIA + GA V+ R + V + + + G VV
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGG-SAEAVV 85
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+A E + E +D+LV+NA + A P E W ++ VN+ + ++
Sbjct: 86 ADLADLEGAANVAEELAA-TRRVDVLVNNAGII-ARAPAEEVSLGRWREVLTVNLDAAWV 143
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
L++ + G IV ++S+ + + AY+ SK A++GLT+A+A + A + V
Sbjct: 144 LSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGV 203
Query: 189 NCLAPGITKTKFAAA 203
N LAPG T AA
Sbjct: 204 NALAPGYVVTANTAA 218
Score = 78.0 bits (193), Expect = 5e-16
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK 743
+ +D+LV+NA + A P E S W ++ VNL ++++L++ M
Sbjct: 96 NVAEELAATRRVDVLVNNAGII-ARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLA 154
Query: 744 KKGGSIVYVSSIGGF 758
G IV ++S+ F
Sbjct: 155 HGSGRIVTIASMLSF 169
Score = 56.8 bits (138), Expect = 6e-09
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+ AY+ SK A+ GLT+ +A + A + VN LAPG + T
Sbjct: 174 NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVT 213
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 235 bits (601), Expect = 4e-72
Identities = 78/253 (30%), Positives = 127/253 (50%), Gaps = 20/253 (7%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
RL+GK +VT ++ GIG A + EGAS+V R+E + +AV L+ E V
Sbjct: 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAI----AV 57
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V V+ + + +F A ++FG + + A V + P W+K+ VN+ +F
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA-HSALSWNLPLEAWEKVLRVNLTGSF 116
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
L+ ++ + + GGS+V S+ GL G Y+ K ++GL + +A +LA
Sbjct: 117 LVARKAGEVLEE--GGSLVLTGSVAGL------GAFGLAHYAAGKLGVVGLARTLALELA 168
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
+ +RVN L PG+ +T A L A E V P+GR P+E+ FL S++++
Sbjct: 169 RKGVRVNVLLPGLIQTPMTAGL--PPWAWEQEVGASPLGRAGRPEEVAQAALFLLSEESA 226
Query: 612 YITGEVIVAAGGM 624
YITG+ + GG
Sbjct: 227 YITGQALYVDGGR 239
Score = 176 bits (450), Expect = 1e-50
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
RL+GK +VT ++ GIG A + EGAS+V R+E + +AV L+ E V
Sbjct: 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAI----AV 57
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V V+ + + +F A ++FG + + A V + P W+K+ VN+ +F
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA-HSALSWNLPLEAWEKVLRVNLTGSF 116
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
L+ ++ + + GGS+V S+ G LG Y+ K ++GL + +A +LA
Sbjct: 117 LVARKAGEVLEE--GGSLVLTGSVAG------LGAFGLAHYAAGKLGVVGLARTLALELA 168
Query: 183 SENIRVNCLAPGITKT 198
+ +RVN L PG+ +T
Sbjct: 169 RKGVRVNVLLPGLIQT 184
Score = 72.2 bits (178), Expect = 4e-14
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ + A + +G + + A V + W+K+ VNL SFL+ ++
Sbjct: 68 EAVFA--EALEEFGRLHGVAHFAGVAHSA-LSWNLPLEAWEKVLRVNLTGSFLVARKAGE 124
Query: 740 YMRKKKGGSIVYVSSIGG 757
+ +GGS+V S+ G
Sbjct: 125 VLE--EGGSLVLTGSVAG 140
Score = 56.4 bits (137), Expect = 6e-09
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ K + GL + +A +LA + +RVN L PGLI+T
Sbjct: 148 HYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQT 184
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 235 bits (602), Expect = 4e-72
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 7/253 (2%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
++ A VA+VT GIG IA+ L+ G + I+ V + L G + I
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVI-F 83
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT-GPVVECPENVWDKIFEVNVKS 494
+ +A Q + +FG ID LV+NA + ++ +D I VN++
Sbjct: 84 LRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRG 143
Query: 495 TFLLTQEVLPY---IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 551
T TQ VL R SI+ ++S+ + Y +SK L ++ +A LA
Sbjct: 144 TVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLA 203
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
I V + PGI ++ AA+ + I VPM R P+++G IVA L
Sbjct: 204 ETGIAVFEVRPGIIRSDMTAAVSGKYDG-LIESGLVPMRRWGEPEDIGNIVAGLAGGQFG 262
Query: 612 YITGEVIVAAGGM 624
+ TG VI A GG+
Sbjct: 263 FATGSVIQADGGL 275
Score = 180 bits (459), Expect = 1e-51
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 6/215 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
++ VA+VT GIG IA+ L+A G + I+ V + L G + I
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVI-F 83
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT-GPVVECPENVWDKIFEVNVKS 125
+ +A Q + +FG ID LV+NA + ++ +D I VN++
Sbjct: 84 LRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRG 143
Query: 126 TFLLTQEVLPY---IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 182
T TQ VL R SI+ ++S+ + Y +SK L ++ +A LA
Sbjct: 144 TVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGLAAFSQGLALRLA 203
Query: 183 SENIRVNCLAPGITKTKFAAAKKEVKKKETNDEPI 217
I V + PGI ++ AA +
Sbjct: 204 ETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLV 238
Score = 71.5 bits (176), Expect = 1e-13
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPAN-EPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
+ + +G ID LV+NA + + ++ +D I VNL+ + TQ VL
Sbjct: 95 QATVD--AVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVL 152
Query: 739 PYMRK---KKGGSIVYVSSIGG 757
M + SI+ ++S+
Sbjct: 153 KAMLASDARASRSIINITSVSA 174
Score = 57.6 bits (140), Expect = 3e-09
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y +SK L ++ +A LA I V + PG+IR+
Sbjct: 184 YCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRS 219
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 234 bits (600), Expect = 7e-72
Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 11/255 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
K +VT + GIG A + ++ GA+V + R ++ + E + KE K
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 70
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
C V+ + K + + G I L++NA V P E + +++VNV F
Sbjct: 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV-SVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 498 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLG-------AYSVSKTALLGLTKAVAQD 549
+ V ++K+ GSIV SS+ + Y+ SK A L K +A +
Sbjct: 130 TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAE 189
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
AS IRVN L+PG T A + ++ + SN+P+ R A P+EM G L SD
Sbjct: 190 WASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDH 247
Query: 610 ASYITGEVIVAAGGM 624
A+Y+TG GG
Sbjct: 248 ATYMTGGEYFIDGGQ 262
Score = 176 bits (450), Expect = 1e-50
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
K +VT + GIG A + ++A GA+V + R ++ + E + KE K
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ 70
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C V+ + K + + G I L++NA V P E + +++VNV F
Sbjct: 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV-SVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 129 LTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLG-------AYSVSKTALLGLTKAVAQD 180
+ V ++K+ GSIV SS+ + Y+ SK A L K +A +
Sbjct: 130 TCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAE 189
Query: 181 LASENIRVNCLAPGITKT 198
AS IRVN L+PG T
Sbjct: 190 WASAGIRVNALSPGYVNT 207
Score = 70.7 bits (174), Expect = 1e-13
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYM-RKKKGGSIV 750
G I L++NA V +P E + + ++DVN+ F + V +K++ GSIV
Sbjct: 90 LGPISGLIANAGV-SVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIV 148
Query: 751 YVSSIGGF 758
SS+
Sbjct: 149 VTSSMSSQ 156
Score = 52.9 bits (128), Expect = 9e-08
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK A L K +A + A IRVN L+PG + T
Sbjct: 171 FYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNT 207
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 234 bits (600), Expect = 7e-72
Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 7/252 (2%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
S V +VT S GIG A+ + + +G V ++ + + V + + G + ++
Sbjct: 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVA- 80
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ V D +F +++FG +D LV+NA + V E +++ VNV +
Sbjct: 81 IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGS 140
Query: 496 FLLTQEVLPYIRKR---NGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 551
L E + + + GG+IV VSS+ L Y+ SK A+ T +A+++A
Sbjct: 141 ILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVA 200
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
+E IRVN + PGI +T A+ + A E+A +VPM R +P+E+ + +L S AS
Sbjct: 201 AEGIRVNAVRPGIIETDLHASGGLPDRAREMA-PSVPMQRAGMPEEVADAILYLLSPSAS 259
Query: 612 YITGEVIVAAGG 623
Y+TG ++ +GG
Sbjct: 260 YVTGSILNVSGG 271
Score = 181 bits (461), Expect = 4e-52
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 6/209 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
S V +VT S GIG A+ + + +G V ++ + + V + + G + ++
Sbjct: 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVA- 80
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ V D +F +++FG +D LV+NA + V E +++ VNV +
Sbjct: 81 IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGS 140
Query: 127 FLLTQEVLPYIRKR---NGGSIVYVSSI-GGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 182
L E + + + GG+IV VSS+ L Y+ SK A+ T +A+++A
Sbjct: 141 ILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTFTIGLAREVA 200
Query: 183 SENIRVNCLAPGITKTKFAAAKKEVKKKE 211
+E IRVN + PGI +T A+ +
Sbjct: 201 AEGIRVNAVRPGIIETDLHASGGLPDRAR 229
Score = 78.0 bits (193), Expect = 5e-16
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
M + + D+ +G +D LV+NA + + + E S +++ VN+ S L E +
Sbjct: 92 AAMFS--AVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVR 149
Query: 740 YMRKKK---GGSIVYVSSIGG 757
M + GG+IV VSS+
Sbjct: 150 RMSRLYSGQGGAIVNVSSMAA 170
Score = 58.0 bits (141), Expect = 3e-09
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK A+ T +A ++A E IRVN + PG+I T
Sbjct: 179 VDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIET 216
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 233 bits (597), Expect = 2e-71
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 11/243 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
S L+G+VAVVT +S GIG AIA++L + GA VV+++R + + G +
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAE-SH 83
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C ++ + G D+LV+NA V GP+ WD + VN+K+ +
Sbjct: 84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY 143
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
LL + P + G I+ +SS+ G P AY+ SK L GL + A++L +R
Sbjct: 144 LLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVR 203
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
V+ +APG +T+F L + +G + PD++ +VA L + E
Sbjct: 204 VSLVAPGSVRTEFGVGLSAKK---------SALGAIE-PDDIADVVALLATQADQSFISE 253
Query: 617 VIV 619
V+V
Sbjct: 254 VLV 256
Score = 201 bits (513), Expect = 2e-59
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
S L+G+VAVVT +S GIG AIA++L + GA VV+++R + + G +
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAE-SH 83
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C ++ + G D+LV+NA V GP+ WD + VN+K+ +
Sbjct: 84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPY 143
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
LL + P + G I+ +SS+ G P AY+ SK L GL + A++L +R
Sbjct: 144 LLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVR 203
Query: 188 VNCLAPGITKTKFAAA 203
V+ +APG +T+F
Sbjct: 204 VSLVAPGSVRTEFGVG 219
Score = 84.6 bits (210), Expect = 2e-18
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G D+LV+NA V PL WD + VNLK+ +LL + P M K G I+
Sbjct: 104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIIN 163
Query: 752 VSSIGGFK 759
+SS+ G
Sbjct: 164 ISSLAGKN 171
Score = 54.1 bits (131), Expect = 4e-08
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
AY+ SK L GL AE+L +RV+ +APG +RT+FG +
Sbjct: 177 AAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGL 220
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 233 bits (597), Expect = 3e-71
Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 12/252 (4%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L+ + +VT + GIG IA + GA+V +++R ++ L + G + GV
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVR 97
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V+ FG +D++ +NA + P + ++ +VNVK T
Sbjct: 98 LDVSDPGSCADAARTVVDAFGALDVVCANAGIFPE-ARLDTMTPEQLSEVLDVNVKGTVY 156
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLAS 552
Q L + G ++ SSI G + G Y SK A LG + A +LA
Sbjct: 157 TVQACLAPLTASGRGRVILTSSITG----PVTGYPGWSHYGASKAAQLGFMRTAAIELAP 212
Query: 553 ENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
+ VN + PG T+ + EE ++PMG L P ++G + AFL +D+A Y
Sbjct: 213 RGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGY 270
Query: 613 ITGEVIVAAGGM 624
ITG+ IV GG
Sbjct: 271 ITGQAIVVDGGQ 282
Score = 178 bits (453), Expect = 1e-50
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 10/195 (5%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L+ + +VT + GIG IA + GA+V +++R ++ L + G + GV
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVR 97
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V+ FG +D++ +NA + P + ++ +VNVK T
Sbjct: 98 LDVSDPGSCADAARTVVDAFGALDVVCANAGIFPE-ARLDTMTPEQLSEVLDVNVKGTVY 156
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLAS 183
Q L + G ++ SSI G + G Y SK A LG + A +LA
Sbjct: 157 TVQACLAPLTASGRGRVILTSSITG----PVTGYPGWSHYGASKAAQLGFMRTAAIELAP 212
Query: 184 ENIRVNCLAPGITKT 198
+ VN + PG T
Sbjct: 213 RGVTVNAILPGNILT 227
Score = 75.3 bits (186), Expect = 5e-15
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +D++ +NA + P L + ++ DVN+K + Q L + G ++
Sbjct: 117 FGALDVVCANAGIFPEA-RLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVIL 175
Query: 752 VSSIGG 757
SSI G
Sbjct: 176 TSSITG 181
Score = 52.6 bits (127), Expect = 2e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y SK A G + A +LAP + VN + PG I T
Sbjct: 192 YGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILT 227
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 229 bits (587), Expect = 4e-70
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 20/249 (8%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
R KV V+T +S GIG + + VV +SR + I V
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI----------KPSADPDIHTVA 74
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
++K E ++ ++FG ID LV+NA V A P VE + +D VNV F
Sbjct: 75 GDISKPETADRIVREGIERFGRIDSLVNNAGVFLA-KPFVEMTQEDYDHNLGVNVAGFFH 133
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
+TQ + K+ G IV +++ S++K L +T+++A + + +
Sbjct: 134 ITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGV 193
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
RVN ++PG+ KT E H P+GR+ ++ V +L + A +ITG
Sbjct: 194 RVNAVSPGVIKTPMHP-----AETHSTLAGLHPVGRMGEIRDVVDAVLYL--EHAGFITG 246
Query: 616 EVIVAAGGM 624
E++ GG
Sbjct: 247 EILHVDGGQ 255
Score = 185 bits (472), Expect = 1e-53
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 13/192 (6%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
R KV V+T +S GIG + + VV +SR + I V
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSI----------KPSADPDIHTVA 74
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
++K E ++ ++FG ID LV+NA V A P VE + +D VNV F
Sbjct: 75 GDISKPETADRIVREGIERFGRIDSLVNNAGVFLA-KPFVEMTQEDYDHNLGVNVAGFFH 133
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLA--PFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
+TQ + K+ G IV +++ S++K L +T+++A + + +
Sbjct: 134 ITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGV 193
Query: 187 RVNCLAPGITKT 198
RVN ++PG+ KT
Sbjct: 194 RVNAVSPGVIKT 205
Score = 83.0 bits (206), Expect = 8e-18
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
DR++ + +G ID LV+NA V A P VE ++ +D VN+ F +TQ
Sbjct: 84 DRIVR--EGIERFGRIDSLVNNAGVFLAK-PFVEMTQEDYDHNLGVNVAGFFHITQRAAA 140
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M K+ G IV +++
Sbjct: 141 EMLKQGSGHIVSITTSLVD 159
Score = 59.1 bits (144), Expect = 9e-10
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
S++K L +T+ +A + + +RVN ++PG+I+T
Sbjct: 169 LASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKT 205
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 230 bits (588), Expect = 5e-70
Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 13/260 (5%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
+ + A VT S GIG A+A+ L+ G +V +R NV+ AV+ L+ GH G
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVD-G 77
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
C V ++ A ++FG I ILV++A N G + + +W + + N+
Sbjct: 78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRN-GGGETADLDDALWADVLDTNLTGV 136
Query: 496 FLLTQEVLPYI--RKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
F +T+EVL R+ G IV ++S GG Y+ SK ++G TK+V +LA
Sbjct: 137 FRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKT 196
Query: 554 NIRVNCLAPGITKTKFAAALYET---------EEAHEIAVSNVPMGRLAVPDEMGGIVAF 604
I VN + PG +T A + E +E HE + +P+GR + P+E+ G+V +
Sbjct: 197 GITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGY 256
Query: 605 LCSDDASYITGEVIVAAGGM 624
L +D A+ IT + + GG+
Sbjct: 257 LVTDAAASITAQALNVCGGL 276
Score = 173 bits (442), Expect = 2e-49
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 4/212 (1%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
+ + A VT S GIG A+A+ L+A G +V +R NV+ AV+ L+ GH G
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVD-G 77
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
C V ++ A ++FG I ILV++A N G + + +W + + N+
Sbjct: 78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRN-GGGETADLDDALWADVLDTNLTGV 136
Query: 127 FLLTQEVLPYI--RKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
F +T+EVL R+ G IV ++S GG Y+ SK ++G TK+V +LA
Sbjct: 137 FRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKHGVVGFTKSVGFELAKT 196
Query: 185 NIRVNCLAPGITKTKFAAAKKEVKKKETNDEP 216
I VN + PG +T A +E +
Sbjct: 197 GITVNAVCPGYVETPMAERVREGYARHWGVTE 228
Score = 69.6 bits (171), Expect = 4e-13
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPY--MRKKKGGSI 749
+G I ILV++A N + + +W + D NL F +T+EVL MR+ G I
Sbjct: 99 FGPIGILVNSAGRNGGG-ETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRI 157
Query: 750 VYVSSIGG 757
V ++S GG
Sbjct: 158 VNIASTGG 165
Score = 50.3 bits (121), Expect = 9e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK + G TK V +LA I VN + PG + T
Sbjct: 174 PYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVET 210
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 229 bits (587), Expect = 6e-70
Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 13/270 (4%)
Query: 366 STKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETL 425
S+ ++ + + +VA+VT ++ GIG IA+RL EG V + +R E + ++ L
Sbjct: 7 SSGLVPRGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL 66
Query: 426 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 485
++ G + G C V + + L +++G +D+LV+NA G E + +W
Sbjct: 67 REAGV-EADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP-GGGATAELADELWL 124
Query: 486 KIFEVNVKSTFLLTQEVLPYI--RKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
+ E N+ F +T++VL +R G IV ++S GG YS SK ++G T
Sbjct: 125 DVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFT 184
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYE---------TEEAHEIAVSNVPMGRLAV 594
KA+ +LA I VN + PG +T AA++ E TEEA + + VP+GR
Sbjct: 185 KALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQ 244
Query: 595 PDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
P E+ +VA+L A+ +T + + GG+
Sbjct: 245 PSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274
Score = 172 bits (439), Expect = 6e-49
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 4/211 (1%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
+ +VA+VT ++ GIG IA+RL EG V + +R E + ++ L++ G + G
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV-EADGR 76
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C V + + L +++G +D+LV+NA G E + +W + E N+ F
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP-GGGATAELADELWLDVVETNLTGVF 135
Query: 128 LLTQEVLPYI--RKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
+T++VL +R G IV ++S GG YS SK ++G TKA+ +LA
Sbjct: 136 RVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTG 195
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKETNDEP 216
I VN + PG +T AA+ +E
Sbjct: 196 ITVNAVCPGFVETPMAASVREHYSDIWEVST 226
Score = 68.8 bits (169), Expect = 7e-13
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPY--MRKKKGGSI 749
YG +D+LV+NA E ++ +W + + NL F +T++VL M ++ G I
Sbjct: 97 YGPVDVLVNNAGRPGGG-ATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRI 155
Query: 750 VYVSSIGG 757
V ++S GG
Sbjct: 156 VNIASTGG 163
Score = 50.3 bits (121), Expect = 9e-07
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS SK + G TK + +LA I VN + PG + T
Sbjct: 173 YSASKHGVVGFTKALGLELARTGITVNAVCPGFVET 208
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 229 bits (585), Expect = 6e-70
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 13/260 (5%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
+ + G+V VVT +S GIG IA +L GA+V I+ R + + Q G Q + V
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCV-PV 59
Query: 437 VCHVAKKEDRQKLFEHAEK-KFGGIDILVSNAAVNPAT------GPVVECPENVWDKIFE 489
VC +++ + + LFE ++ + G +D+LV+NA T E P ++WD I
Sbjct: 60 VCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINN 119
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 549
V ++ + + + G IV +SS G L + Y V K A L A +
Sbjct: 120 VGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNV-PYGVGKAACDKLAADCAHE 178
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSN--VPMGRLA-VPDEMGGIVAFLC 606
L + L PGI +T+ EE + V A + G V L
Sbjct: 179 LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA 238
Query: 607 SD-DASYITGEVIVAAGGMQ 625
+D + ++G+V+ + +
Sbjct: 239 TDPNILSLSGKVLPSCDLAR 258
Score = 193 bits (494), Expect = 9e-57
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 9/203 (4%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
+ + G+V VVT +S GIG IA +L GA+V I+ R + + Q G Q + V
Sbjct: 1 APMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCV-PV 59
Query: 68 VCHVAKKEDRQKLFEHAEK-KFGGIDILVSNAAVNPAT------GPVVECPENVWDKIFE 120
VC +++ + + LFE ++ + G +D+LV+NA T E P ++WD I
Sbjct: 60 VCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINN 119
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
V ++ + + + G IV +SS G L + Y V K A L A +
Sbjct: 120 VGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNV-PYGVGKAACDKLAADCAHE 178
Query: 181 LASENIRVNCLAPGITKTKFAAA 203
L + L PGI +T+
Sbjct: 179 LRRHGVSCVSLWPGIVQTELLKE 201
Score = 79.2 bits (196), Expect = 2e-16
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 692 YGGIDILVSNAAVNPA------NEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK 745
G +D+LV+NA N+ E +WD I +V L+ + + M
Sbjct: 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG 140
Query: 746 GGSIVYVSSIGGF 758
G IV +SS G
Sbjct: 141 QGLIVVISSPGSL 153
Score = 61.5 bits (150), Expect = 1e-10
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 631 STVEFRFIG--AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLST 688
S +++ Y V K A L A +L + L PG+++T + + ++
Sbjct: 149 SPGSLQYMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQT---ELLKEHMAK 205
Query: 689 DKLYGGI 695
+++
Sbjct: 206 EEVLQDP 212
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 228 bits (583), Expect = 2e-69
Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 10/249 (4%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
S+ K+A+VT + G+G A+A L+ G V ++ R+ + + + + V
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDAL----CV 79
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V + + LF +KFG +D+L +NA P+ + W ++ + N+ F
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 497 LLTQEVLPYIRKRN--GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
L TQE ++ + GG I+ SI +P Y+ +K A+ GLTK+ + D +
Sbjct: 140 LCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHD 199
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD-DASYI 613
I + G T A + A ++ + + + V ++ S + +
Sbjct: 200 IACGQIDIGNADTPMAQKMKAGVPQ---ADLSIKVEPVMDVAHVASAVVYMASLPLDANV 256
Query: 614 TGEVIVAAG 622
I+A
Sbjct: 257 QFMTIMATK 265
Score = 199 bits (507), Expect = 2e-58
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 6/212 (2%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
S+ K+A+VT + G+G A+A L+ G V ++ R+ + + + + V
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDAL----CV 79
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V + + LF +KFG +D+L +NA P+ + W ++ + N+ F
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 128 LLTQEVLPYIRKRN--GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
L TQE ++ + GG I+ SI +P Y+ +K A+ GLTK+ + D +
Sbjct: 140 LCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAITGLTKSTSLDGRVHD 199
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKETNDEPI 217
I + G T A K + +
Sbjct: 200 IACGQIDIGNADTPMAQKMKAGVPQADLSIKV 231
Score = 81.1 bits (201), Expect = 4e-17
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK--GGSI 749
+G +D+L +NA P+ + + W ++ D NL FL TQE M+ ++ GG I
Sbjct: 100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRI 159
Query: 750 VYVSSIGG 757
+ SI
Sbjct: 160 INNGSISA 167
Score = 58.8 bits (143), Expect = 1e-09
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
Y+ +K A+ GLTK + D +I + G T +M A
Sbjct: 176 PYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKA 220
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 229 bits (585), Expect = 2e-69
Identities = 72/276 (26%), Positives = 136/276 (49%), Gaps = 8/276 (2%)
Query: 361 EVFSTSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNK 420
V S +++ L GK+A+VT +S GIGFAIA + GA++V + + V++
Sbjct: 14 LVPRGSHMNQQFSLDQFSLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDR 73
Query: 421 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 480
+ + G G VC V ++ Q + E + G IDILV+NA + P++E
Sbjct: 74 GMAAYKAAGI-NAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGII-RRVPMIEMT 131
Query: 481 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 540
+ ++ ++++ + F++++ V+P + K+ G I+ + S+ + + AY+ +K L
Sbjct: 132 AAQFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK 191
Query: 541 GLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSN------VPMGRLAV 594
LTK +A + NI+ N + PG T A L E ++ + P R
Sbjct: 192 MLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGE 251
Query: 595 PDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRLTK 630
+++ G FL SD ++++ G ++ GG+ + + K
Sbjct: 252 AEDLMGPAVFLASDASNFVNGHILYVDGGILAYIGK 287
Score = 182 bits (465), Expect = 2e-52
Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 6/230 (2%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L GK+A+VT +S GIGFAIA + GA++V + + V++ + + G G V
Sbjct: 31 SLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGI-NAHGYV 89
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
C V ++ Q + E + G IDILV+NA + P++E + ++ ++++ + F+
Sbjct: 90 CDVTDEDGIQAMVAQIESEVGIIDILVNNAGII-RRVPMIEMTAAQFRQVIDIDLNAPFI 148
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+++ V+P + K+ G I+ + S+ + + AY+ +K L LTK +A + NI+
Sbjct: 149 VSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQC 208
Query: 189 NCLAPGITKTKFAAAKKEVKKKETNDEPIVYTSNTAP----GEMKDVLGP 234
N + PG T A +E++K + + P GE +D++GP
Sbjct: 209 NGIGPGYIATPQTAPLRELQKDGSRHPFDQFIIAKTPAARWGEAEDLMGP 258
Score = 74.2 bits (183), Expect = 1e-14
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
M+A + G IDILV+NA + P++E + + ++ D++L + F++++ V+P
Sbjct: 99 QAMVA--QIESEVGIIDILVNNAGII-RRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIP 155
Query: 740 YMRKKKGGSIVYVSSIGGF 758
M KK G I+ + S+
Sbjct: 156 SMIKKGHGKIINICSMMSE 174
Score = 54.1 bits (131), Expect = 5e-08
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+ AY+ +K L LTK +A + NI+ N + PG I T
Sbjct: 180 VSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIAT 218
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 229 bits (586), Expect = 2e-69
Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 5/251 (1%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS--SRKESNVNKAVETLQKEGHQKI 433
+ RL + A+VT GIG A A + EGA V I+ +E + + +++ G +K
Sbjct: 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-RKA 102
Query: 434 SGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVK 493
+ ++ + + L A + GG+DIL A A + + + + F VNV
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVF 162
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
+ F +TQE +P + K G SI+ SSI P L Y+ +K A+L ++ +A+ +A +
Sbjct: 163 ALFWITQEAIPLLPK--GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEK 220
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
IRVN +APG T + +T++ PM R P E+ + +L S ++SY+
Sbjct: 221 GIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYV 280
Query: 614 TGEVIVAAGGM 624
T EV GG
Sbjct: 281 TAEVHGVCGGE 291
Score = 173 bits (442), Expect = 4e-49
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 5/194 (2%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS--SRKESNVNKAVETLQKEGHQKI 64
+ RL + A+VT GIG A A + EGA V I+ +E + + +++ G +K
Sbjct: 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-RKA 102
Query: 65 SGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVK 124
+ ++ + + L A + GG+DIL A A + + + + F VNV
Sbjct: 103 VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVF 162
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
+ F +TQE +P + K G SI+ SSI P L Y+ +K A+L ++ +A+ +A +
Sbjct: 163 ALFWITQEAIPLLPK--GASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVAEK 220
Query: 185 NIRVNCLAPGITKT 198
IRVN +APG T
Sbjct: 221 GIRVNIVAPGPIWT 234
Score = 79.9 bits (198), Expect = 2e-16
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 688 TDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGG 747
+ GG+DIL A A + + + + + F VN+ + F +TQE +P + KG
Sbjct: 122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLL--PKGA 179
Query: 748 SIVYVSSIGGFK 759
SI+ SSI ++
Sbjct: 180 SIITTSSIQAYQ 191
Score = 51.4 bits (124), Expect = 4e-07
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ +K A+ ++ +A+ +A + IRVN +APG I T
Sbjct: 198 DYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWT 234
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 228 bits (583), Expect = 2e-69
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 9/255 (3%)
Query: 378 RLAGKVAVVTASSD--GIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKIS 434
L GKV VVT +S G+G A+ + GA+V I+ + + + V+ L+K K
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
C V E +KL + FG ID ++NA A +++ W+ + +V++
Sbjct: 77 AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGA-TADSGILDGSVEAWNHVVQVDLNG 135
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLAS 552
TF + V + ++R GS+V +S+ G +Y+V+K + + +++A +
Sbjct: 136 TFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRD 195
Query: 553 ENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY 612
RVN ++PG T + + +E ++ S +PMGR + E+ G + SD ++Y
Sbjct: 196 -FARVNSISPGYIDTGLSDFV--PKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTY 252
Query: 613 ITGEVIVAAGGMQSR 627
TG ++ GG +R
Sbjct: 253 TTGADLLIDGGYTTR 267
Score = 170 bits (434), Expect = 3e-48
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 8/208 (3%)
Query: 9 RLTGKVAVVTASSD--GIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKIS 65
L GKV VVT +S G+G A+ + GA+V I+ + + + V+ L+K K
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 125
C V E +KL + FG ID ++NA A +++ W+ + +V++
Sbjct: 77 AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGA-TADSGILDGSVEAWNHVVQVDLNG 135
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQDLAS 183
TF + V + ++R GS+V +S+ G +Y+V+K + + +++A +
Sbjct: 136 TFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEWRD 195
Query: 184 ENIRVNCLAPGITKTKF-AAAKKEVKKK 210
RVN ++PG T KE ++
Sbjct: 196 -FARVNSISPGYIDTGLSDFVPKETQQL 222
Score = 75.3 bits (186), Expect = 4e-15
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G ID ++NA A+ +++ S W+ + V+L +F + V + +++ GS+V
Sbjct: 99 FGQIDAFIANAGA-TADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVI 157
Query: 752 VSSIGGF 758
+S+ G
Sbjct: 158 TASMSGH 164
Score = 47.9 bits (115), Expect = 5e-06
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTK 677
+Y+V+K + + +A + RVN ++PG I T
Sbjct: 174 SYNVAKAGCIHMARSLANEWRD-FARVNSISPGYIDTG 210
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 227 bits (582), Expect = 3e-69
Identities = 54/258 (20%), Positives = 109/258 (42%), Gaps = 21/258 (8%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKES-------NVNKAVETLQKEGH 430
L+GK +T +S GIG AIA R + +GA+V I+++ ++ A + G
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 490
Q + + C + +++ + FGGIDILV+NA+ ++ P +D + +V
Sbjct: 63 QGL-ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLR-GTLDTPMKRFDLMQQV 120
Query: 491 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQ 548
N + +F+ Q LP++ + I+ ++ L P Y+++K + +T +A
Sbjct: 121 NARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAA 180
Query: 549 DLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
+ + + +N L P A + V P+ M + +
Sbjct: 181 EFGPQGVAINALWPRTVIATDAIN----------MLPGVDAAACRRPEIMADAAHAVLTR 230
Query: 609 DASYITGEVIVAAGGMQS 626
+A+ G+ ++ +
Sbjct: 231 EAAGFHGQFLIDDEVLAQ 248
Score = 189 bits (482), Expect = 5e-55
Identities = 48/197 (24%), Positives = 93/197 (47%), Gaps = 11/197 (5%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKES-------NVNKAVETLQKEGH 61
L+GK +T +S GIG AIA R + +GA+V I+++ ++ A + G
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 121
Q + + C + +++ + FGGIDILV+NA+ ++ P +D + +V
Sbjct: 63 QGL-ALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLR-GTLDTPMKRFDLMQQV 120
Query: 122 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG--AYSVSKTALLGLTKAVAQ 179
N + +F+ Q LP++ + I+ ++ L P Y+++K + +T +A
Sbjct: 121 NARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAA 180
Query: 180 DLASENIRVNCLAPGIT 196
+ + + +N L P
Sbjct: 181 EFGPQGVAINALWPRTV 197
Score = 77.3 bits (191), Expect = 9e-16
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+A +T +GGIDILV+NA+ ++ +D + VN + SF+ Q LP
Sbjct: 78 RAAVA--ATVDTFGGIDILVNNASAIWLR-GTLDTPMKRFDLMQQVNARGSFVCAQACLP 134
Query: 740 YMRKKKGGSIVYVSSIGG 757
++ + I+ ++
Sbjct: 135 HLLQAPNPHILTLAPPPS 152
Score = 54.9 bits (133), Expect = 2e-08
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPG-LIRTKFGDRMIAMLS 687
Y+++K + +T +A + P+ + +N L P +I T I ML
Sbjct: 163 GYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIAT----DAINMLP 207
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 227 bits (580), Expect = 3e-69
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 13/252 (5%)
Query: 381 GKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 440
GKV +VT S GIG +I L + V+ S ++ L+++ + VV +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE--APLKKLKEKYGDRFFYVVGDI 59
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 500
+ ++L A K G ID LV+NA V V E N W K++++N S L
Sbjct: 60 TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVG 119
Query: 501 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 560
LP ++K G++V+VSS F GAY SK AL +A + ++ +
Sbjct: 120 IALPELKKT-NGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIAV 176
Query: 561 APGITKTKFAAALYE-------TEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD-ASY 612
APGI T + E + E ++ +L + A L
Sbjct: 177 APGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDG 236
Query: 613 ITGEVIVAAGGM 624
+ G+ +
Sbjct: 237 VNGQYLSYNDPA 248
Score = 192 bits (491), Expect = 2e-56
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 5/204 (2%)
Query: 12 GKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 71
GKV +VT S GIG +I L + V+ S ++ L+++ + VV +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE--APLKKLKEKYGDRFFYVVGDI 59
Query: 72 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 131
+ ++L A K G ID LV+NA V V E N W K++++N S L
Sbjct: 60 TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVG 119
Query: 132 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 191
LP ++K G++V+VSS F GAY SK AL +A + ++ +
Sbjct: 120 IALPELKKT-NGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANE--ERQVKAIAV 176
Query: 192 APGITKTKFAAAKKEVKKKETNDE 215
APGI T +E +
Sbjct: 177 APGIVDTDMQVNIRENVGPSSMSA 200
Score = 83.5 bits (207), Expect = 6e-18
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G ID LV+NA V + + E W K++D+N S L LP + KK G++V+
Sbjct: 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPEL-KKTNGNVVF 134
Query: 752 VSSIGGFK 759
VSS
Sbjct: 135 VSSDACNM 142
Score = 48.8 bits (117), Expect = 2e-06
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
GAY SK AL +A ++ +APG++ T
Sbjct: 148 GAYGSSKAALNHFAMTLA--NEERQVKAIAVAPGIVDT 183
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 226 bits (578), Expect = 1e-68
Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 23/259 (8%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH-QKISGV 436
+ GKVA+VT ++ GIG A A+ L +GA V + + L ++ QK +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
C VA ++ + F FG +DILV+NA VN E W+K ++N+ S
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---------NEKNWEKTLQINLVSVI 114
Query: 497 LLTQEVLPYIRKRN---GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK--AVAQDLA 551
T L Y+ K+N GG I+ +SS+ GL P Y SK ++G T+ A+A +L
Sbjct: 115 SGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLM 174
Query: 552 SENIRVNCLAPGITKTKFAAALYETE------EAHEIAVSNVPMGRLAVPDEMGGIVAFL 605
+ +R+N + PG T ++ + E E + + + P + + L
Sbjct: 175 NSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITL 234
Query: 606 CSDDASYITGEVIVAAGGM 624
DDA + G ++
Sbjct: 235 IEDDA--LNGAIMKITTSK 251
Score = 184 bits (469), Expect = 3e-53
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 15/196 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH-QKISGV 67
+ GKVA+VT ++ GIG A A+ L +GA V + + L ++ QK +
Sbjct: 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFI 63
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
C VA ++ + F FG +DILV+NA VN E W+K ++N+ S
Sbjct: 64 QCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---------NEKNWEKTLQINLVSVI 114
Query: 128 LLTQEVLPYIRKRN---GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK--AVAQDLA 182
T L Y+ K+N GG I+ +SS+ GL P Y SK ++G T+ A+A +L
Sbjct: 115 SGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLM 174
Query: 183 SENIRVNCLAPGITKT 198
+ +R+N + PG T
Sbjct: 175 NSGVRLNAICPGFVNT 190
Score = 69.6 bits (171), Expect = 3e-13
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK---GGS 748
+G +DILV+NA VN +E W+K +NL S T L YM K+ GG
Sbjct: 84 FGRLDILVNNAGVN---------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGI 134
Query: 749 IVYVSSIGGF 758
I+ +SS+ G
Sbjct: 135 IINMSSLAGL 144
Score = 53.0 bits (128), Expect = 1e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 640 AYSVSKTALFGLTKVVA--EDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDI 697
Y SK + G T+ A +L +R+N + PG + T + + + + D
Sbjct: 152 VYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDH 211
Query: 698 LVS 700
+
Sbjct: 212 IKD 214
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 225 bits (577), Expect = 1e-68
Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 15/247 (6%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L+ ++T +S +G A RL G V+IS R E +V L++ G +
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAGAV---ALY 77
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
+ + + + + + +V NA+ A E +N + ++F V++ + +L
Sbjct: 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAE-TPGEEADN-FTRMFSVHMLAPYL 135
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
+ P + IV++S AY +K L LT + A A ++V
Sbjct: 136 INLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL-VKV 194
Query: 558 NCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEV 617
N +AP + + A++ +G + + + +L ++Y+TG
Sbjct: 195 NGIAPALLMF----QPKDDAAYRANALAKSALGIEPGAEVIYQSLRYLLD--STYVTGTT 248
Query: 618 IVAAGGM 624
+ GG
Sbjct: 249 LTVNGGR 255
Score = 180 bits (460), Expect = 4e-52
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 9/190 (4%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
L+ ++T +S +G A RL G V+IS R E +V L++ G +
Sbjct: 24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH---ASVTELRQAGAV---ALY 77
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
+ + + + + + +V NA+ A E +N + ++F V++ + +L
Sbjct: 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAE-TPGEEADN-FTRMFSVHMLAPYL 135
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
+ P + IV++S AY +K L LT + A A ++V
Sbjct: 136 INLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLSFAARFAPL-VKV 194
Query: 189 NCLAPGITKT 198
N +AP +
Sbjct: 195 NGIAPALLMF 204
Score = 78.4 bits (194), Expect = 3e-16
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
I + +V NA+ A + ++F V++ + +L+ P
Sbjct: 87 MAFID--LLKTQTSSLRAVVHNASEWLAE--TPGEEADNFTRMFSVHMLAPYLINLHCEP 142
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+ + IV++S K
Sbjct: 143 LLTASEVADIVHISDDVTRK 162
Score = 56.4 bits (137), Expect = 6e-09
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY +K L LT A AP ++VN +AP L+
Sbjct: 169 AYCATKAGLESLTLSFAARFAPL-VKVNGIAPALLMF 204
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 225 bits (576), Expect = 2e-68
Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 24/269 (8%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI-------------SSRKESNVNKAVET 424
+L G+VA +T ++ G G A A R++ EGA ++ ++++ V
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 425 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 484
++ ++I V + +K+ + G +DI+V+NA V + +
Sbjct: 68 VEAAN-RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAP-QAWDDITPEDF 125
Query: 485 DKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
+ ++NV T+ P I + GGSI+ +SS G+ + Y+ SK A+ GL
Sbjct: 126 RDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLA 185
Query: 544 KAVAQDLASENIRVNCLAPGITKT--------KFAAALYETEEAHEIAVSNVPMGRLAVP 595
+A A +L +IRVN + PG T ET ++ +A P
Sbjct: 186 RAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEP 245
Query: 596 DEMGGIVAFLCSDDASYITGEVIVAAGGM 624
+++ V +L SD++ +T I G
Sbjct: 246 EDIADTVCWLASDESRKVTAAQIPVDQGS 274
Score = 178 bits (455), Expect = 4e-51
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI-------------SSRKESNVNKAVET 55
+L G+VA +T ++ G G A A R++AEGA ++ ++++ V
Sbjct: 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRL 67
Query: 56 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 115
++ ++I V + +K+ + G +DI+V+NA V + +
Sbjct: 68 VEAAN-RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAP-QAWDDITPEDF 125
Query: 116 DKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 174
+ ++NV T+ P I + GGSI+ +SS G+ + Y+ SK A+ GL
Sbjct: 126 RDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVTGLA 185
Query: 175 KAVAQDLASENIRVNCLAPGITKT 198
+A A +L +IRVN + PG T
Sbjct: 186 RAFAAELGKHSIRVNSVHPGPVNT 209
Score = 76.8 bits (190), Expect = 1e-15
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK-KGGSIV 750
G +DI+V+NA V + + + + D+N+ ++ P + + +GGSI+
Sbjct: 99 LGRLDIIVANAGVAAPQ-AWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSII 157
Query: 751 YVSSIGGFK 759
+SS G K
Sbjct: 158 LISSAAGMK 166
Score = 60.3 bits (147), Expect = 4e-10
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTK--FGDRMIAMLSTDKLY 692
F+ Y+ SK A+ GL + A +L +IRVN + PG + T GD + A+ +
Sbjct: 168 QPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETN 227
Query: 693 GGIDILVSNAAVNPANEPLVECSEVV 718
+ +++ + EP + ++ V
Sbjct: 228 PQLSHVLTPFLPDWVAEP-EDIADTV 252
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 224 bits (574), Expect = 5e-68
Identities = 64/276 (23%), Positives = 109/276 (39%), Gaps = 26/276 (9%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKE 428
M+ + AV+T + IG +IA RL +G VV+ E + V L
Sbjct: 1 MNET-SHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA 59
Query: 429 GHQKISGVVCHVAKKED----RQKLFEHAEKKFGGIDILVSNAAV----------NPATG 474
++ + + + + + FG D+LV+NA+ +
Sbjct: 60 RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGA 119
Query: 475 PVVECPENVWDKIFEVNVKSTFLLTQEVLPYIR-----KRNGGSIVYVSSIGGLAPFKLL 529
+ + ++F N + L + + S+V + P
Sbjct: 120 ADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGF 179
Query: 530 GAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM 589
Y+++K AL GLT+A A +LA +IRVN +APG++ +E E VP+
Sbjct: 180 CVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLL----PPAMPQETQEEYRRKVPL 235
Query: 590 GRLA-VPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
G+ ++ +AFL S DA YITG + GG+
Sbjct: 236 GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271
Score = 174 bits (443), Expect = 2e-49
Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 21/218 (9%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKE 59
M+ + AV+T + IG +IA RL +G VV+ E + V L
Sbjct: 1 MNET-SHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA 59
Query: 60 GHQKISGVVCHVAKKED----RQKLFEHAEKKFGGIDILVSNAAV----------NPATG 105
++ + + + + + FG D+LV+NA+ +
Sbjct: 60 RAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGA 119
Query: 106 PVVECPENVWDKIFEVNVKSTFLLTQEVLPYIR-----KRNGGSIVYVSSIGGLAPFKLL 160
+ + ++F N + L + + S+V + P
Sbjct: 120 ADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGF 179
Query: 161 GAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
Y+++K AL GLT+A A +LA +IRVN +APG++
Sbjct: 180 CVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLL 217
Score = 68.4 bits (168), Expect = 8e-13
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 17/93 (18%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAV----------NPANEPLVECSEVVWDKIFDVNLKS 729
+ +I + + +G D+LV+NA+ + + + ++F N +
Sbjct: 82 EDIID--CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVA 139
Query: 730 SFLLTQEVLPYMR-----KKKGGSIVYVSSIGG 757
L + + + S+V +
Sbjct: 140 PLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 172
Score = 57.3 bits (139), Expect = 5e-09
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+++K AL GLT+ A +LAP +IRVN +APGL
Sbjct: 180 CVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLL 217
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 223 bits (571), Expect = 5e-68
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 7/248 (2%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RLAGK A+VT ++ GIG AIA RL+ +GA+V++S A ++ K+ +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKAR----AIA 58
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
++ + LF + GGIDILV+NA++ P + + W KI +VN+ TF+
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVP-FVAWDDVDLDHWRKIIDVNLTGTFI 117
Query: 498 LTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
+T+ +R G ++ ++S A + AY +K ++G T+A+A +L NI
Sbjct: 118 VTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNIT 177
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGE 616
N + PG+ ++ A EA M P+ + +V+FL SDDA +ITG+
Sbjct: 178 ANAVTPGLIESDGVKASPH-NEAFGFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQ 236
Query: 617 VIVAAGGM 624
+ GM
Sbjct: 237 TLNVDAGM 244
Score = 170 bits (434), Expect = 1e-48
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 6/191 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL GK A+VT ++ GIG AIA RL+A+GA+V++S A ++ K+ +
Sbjct: 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKAR----AIA 58
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
++ + LF + GGIDILV+NA++ P + + W KI +VN+ TF+
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVP-FVAWDDVDLDHWRKIIDVNLTGTFI 117
Query: 129 LTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+T+ +R G ++ ++S A + AY +K ++G T+A+A +L NI
Sbjct: 118 VTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNIT 177
Query: 188 VNCLAPGITKT 198
N + PG+ ++
Sbjct: 178 ANAVTPGLIES 188
Score = 70.6 bits (174), Expect = 1e-13
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ A L GGIDILV+NA++ P + W KI DVNL +F++T+
Sbjct: 68 KALFA--EIQALTGGIDILVNNASIVPFV-AWDDVDLDHWRKIIDVNLTGTFIVTRAGTD 124
Query: 740 YMRKK-KGGSIVYVSSIGGF 758
MR K G ++ ++S F
Sbjct: 125 QMRAAGKAGRVISIASNTFF 144
Score = 52.9 bits (128), Expect = 1e-07
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTD 689
Y +K + G T+ +A +L NI N + PGLI + + +
Sbjct: 153 YVAAKGGVIGFTRALATELGKYNITANAVTPGLIESD----GVKASPHN 197
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 223 bits (571), Expect = 2e-67
Identities = 57/263 (21%), Positives = 113/263 (42%), Gaps = 18/263 (6%)
Query: 375 NASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESN-------VNKAVETLQK 427
+ L GK ++ S GIG AIAKR++ +GA+V + ++ + A + +++
Sbjct: 3 GSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE 62
Query: 428 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 487
G Q + +V + + ++FGGIDI V+NA+ G + E P +D +
Sbjct: 63 AGGQAL-PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAIN-LGSIEEVPLKRFDLM 120
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAV 546
+ V+ T+ ++Q +P+++ R+ I+ +S L + Y ++K + +
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGI 180
Query: 547 AQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC 606
A++L I N L P T T + + M R P+ +
Sbjct: 181 AEELRDAGIASNTLWPRTT--------VATAAVQNLLGGDEAMARSRKPEVYADAAYVVL 232
Query: 607 SDDASYITGEVIVAAGGMQSRLT 629
+ +SY ++ ++S +T
Sbjct: 233 NKPSSYTGNTLLCEDVLLESGVT 255
Score = 187 bits (478), Expect = 2e-54
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 10/199 (5%)
Query: 6 NASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESN-------VNKAVETLQK 58
+ L GK ++ S GIG AIAKR++A+GA+V + ++ + A + +++
Sbjct: 3 GSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE 62
Query: 59 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
G Q + +V + + ++FGGIDI V+NA+ G + E P +D +
Sbjct: 63 AGGQAL-PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAIN-LGSIEEVPLKRFDLM 120
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-APFKLLGAYSVSKTALLGLTKAV 177
+ V+ T+ ++Q +P+++ R+ I+ +S L + Y ++K + +
Sbjct: 121 NGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGI 180
Query: 178 AQDLASENIRVNCLAPGIT 196
A++L I N L P T
Sbjct: 181 AEELRDAGIASNTLWPRTT 199
Score = 76.2 bits (188), Expect = 2e-15
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+A T + +GGIDI V+NA+ + E +D + + ++ ++ ++Q +P
Sbjct: 81 AAAVA--KTVEQFGGIDICVNNASAINLG-SIEEVPLKRFDLMNGIQVRGTYAVSQSCIP 137
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+M+ + I+ +S +
Sbjct: 138 HMKGRDNPHILTLSPPIRLE 157
Score = 53.4 bits (129), Expect = 8e-08
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPG 672
Y ++K + +AE+L I N L P
Sbjct: 165 PYMMAKYGMTLCALGIAEELRDAGIASNTLWPR 197
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 222 bits (569), Expect = 2e-67
Identities = 70/256 (27%), Positives = 126/256 (49%), Gaps = 17/256 (6%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ A++TA + G+G + ++L +G SV ++ ++ + ++ K+ +++ V
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
V KKED K+ E A FG ID L++NA +V+ E+ W+++ + N+ +
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAG-PYVFERKKLVDYEEDEWNEMIQGNLTAV 122
Query: 496 FLLTQEVLPYIRKRNGGSIVYVS--SIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQ 548
F L + V+P +RK+N G I+ G A++ +K L+ LTK VA
Sbjct: 123 FHLLKLVVPVMRKQNFGRIINYGFQGADSAP-----GWIYRSAFAAAKVGLVSLTKTVAY 177
Query: 549 DLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
+ A I N + PG + A +EA ++ N P+GR +++ ++FLC D
Sbjct: 178 EEAEYGITANMVCPGDIIGEMKEAT--IQEARQLKEHNTPIGRSGTGEDIARTISFLCED 235
Query: 609 DASYITGEVIVAAGGM 624
D+ ITG +I G +
Sbjct: 236 DSDMITGTIIEVTGAV 251
Score = 165 bits (420), Expect = 2e-46
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ A++TA + G+G + ++L A+G SV ++ ++ + ++ K+ +++ V
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
V KKED K+ E A FG ID L++NA +V+ E+ W+++ + N+ +
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAG-PYVFERKKLVDYEEDEWNEMIQGNLTAV 122
Query: 127 FLLTQEVLPYIRKRNGGSIVYVS--SIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQ 179
F L + V+P +RK+N G I+ G A++ +K L+ LTK VA
Sbjct: 123 FHLLKLVVPVMRKQNFGRIINYGFQGADSAP-----GWIYRSAFAAAKVGLVSLTKTVAY 177
Query: 180 DLASENIRVNCLAPGITKT 198
+ A I N + PG
Sbjct: 178 EEAEYGITANMVCPGDIIG 196
Score = 63.0 bits (154), Expect = 5e-11
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 692 YGGIDILVSNA--AVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+G ID L++NA V LV+ E W+++ NL + F L + V+P MRK+ G I
Sbjct: 83 FGKIDFLINNAGPYVFERK-KLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRI 141
Query: 750 VYVSS 754
+
Sbjct: 142 INYGF 146
Score = 52.6 bits (127), Expect = 2e-07
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++ +K L LTK VA + A I N + PG I
Sbjct: 161 FAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIG 196
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 223 bits (570), Expect = 2e-67
Identities = 72/275 (26%), Positives = 110/275 (40%), Gaps = 25/275 (9%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRK-ESNVNKAVETLQKEG 429
S + AVVT ++ IG AIA +L G VVI + L KE
Sbjct: 13 GLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER 72
Query: 430 HQKISGVVCHVAKKEDR----QKLFEHAEKKFGGIDILVSNAAV---------NPATGPV 476
+ +++ + FG D+LV+NA+ +
Sbjct: 73 SNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSN 132
Query: 477 VECPENVWDKIFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSSIGGLAPFKLLG 530
+ E ++ N + FLLT + + SIV + P
Sbjct: 133 GKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFS 192
Query: 531 AYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMG 590
Y++ K AL+GLT++ A +LA IRVN +APG++ A+ EE + VP+G
Sbjct: 193 LYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLL--PVAM--GEEEKDKWRRKVPLG 248
Query: 591 RL-AVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
R A +++ V FL S A YITG +I GG+
Sbjct: 249 RREASAEQIADAVIFLVSGSAQYITGSIIKVDGGL 283
Score = 174 bits (443), Expect = 2e-49
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 20/217 (9%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRK-ESNVNKAVETLQKEG 60
S + AVVT ++ IG AIA +L G VVI + L KE
Sbjct: 13 GLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER 72
Query: 61 HQKISGVVCHVAKKEDR----QKLFEHAEKKFGGIDILVSNAAV---------NPATGPV 107
+ +++ + FG D+LV+NA+ +
Sbjct: 73 SNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSN 132
Query: 108 VECPENVWDKIFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSSIGGLAPFKLLG 161
+ E ++ N + FLLT + + SIV + P
Sbjct: 133 GKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFS 192
Query: 162 AYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
Y++ K AL+GLT++ A +LA IRVN +APG++
Sbjct: 193 LYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLL 229
Score = 68.4 bits (168), Expect = 1e-12
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAV---------NPANEPLVECSEVVWDKIFDVNLKSS 730
+ +I S + +G D+LV+NA+ + + + E ++ N +
Sbjct: 94 EEIIN--SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAP 151
Query: 731 FLLTQEVLPYMR------KKKGGSIVYVSSIGGFK 759
FLLT + SIV + +
Sbjct: 152 FLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
Score = 58.0 bits (141), Expect = 3e-09
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y++ K AL GLT+ A +LAP IRVN +APG+
Sbjct: 194 YNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLL 229
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 221 bits (566), Expect = 7e-67
Identities = 75/276 (27%), Positives = 117/276 (42%), Gaps = 23/276 (8%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI-------------SSRKES 416
A A L G+VA +T ++ G G + A RL+ EGA ++ +
Sbjct: 4 SMVAGQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPE 63
Query: 417 NVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPV 476
++++ ++ +G +K V V ++L ++FG +D++V+NA V G V
Sbjct: 64 DLDETARLVEDQG-RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSW-GRV 121
Query: 477 VECPENVWDKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVS 535
E + WD + VN+ T+ + +P + + NGGSIV VSS GL G YS S
Sbjct: 122 WELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSAS 181
Query: 536 KTALLGLTKAVAQDLASENIRVNCLAPGITKT-------KFAAALYETEEAHEIAVSNVP 588
K L LT +A +L IRVN + P +T H V
Sbjct: 182 KHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQ 241
Query: 589 MGRLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
DE+ +VA+L D + +TG I G
Sbjct: 242 PNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277
Score = 176 bits (448), Expect = 4e-50
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI-------------SSRKES 47
A A L G+VA +T ++ G G + A RL+AEGA ++ +
Sbjct: 4 SMVAGQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPE 63
Query: 48 NVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPV 107
++++ ++ +G +K V V ++L ++FG +D++V+NA V G V
Sbjct: 64 DLDETARLVEDQG-RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSW-GRV 121
Query: 108 VECPENVWDKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVS 166
E + WD + VN+ T+ + +P + + NGGSIV VSS GL G YS S
Sbjct: 122 WELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSAS 181
Query: 167 KTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
K L LT +A +L IRVN + P +T
Sbjct: 182 KHGLTALTNTLAIELGEYGIRVNSIHPYSVET 213
Score = 76.1 bits (188), Expect = 3e-15
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK-KKGGSIV 750
+G +D++V+NA V + E ++ WD + VNL ++ + +P M + GGSIV
Sbjct: 103 FGRLDVVVANAGVLSWG-RVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIV 161
Query: 751 YVSSIGGFK 759
VSS G K
Sbjct: 162 VVSSSAGLK 170
Score = 59.5 bits (145), Expect = 8e-10
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI--- 695
G YS SK L LT +A +L IRVN + P + T M+ + +
Sbjct: 176 GHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVET-------PMIEPEAMMEIFARH 228
Query: 696 -DILVSNAAVNPANEPLVECSEV 717
+ S + + EV
Sbjct: 229 PSFVHSFPPMPVQPNGFMTADEV 251
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 219 bits (561), Expect = 1e-66
Identities = 77/254 (30%), Positives = 123/254 (48%), Gaps = 24/254 (9%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
RL K ++T ++ GIG A + + EGA +V +E + +A E + VV
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAHPVV 55
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
VA ++ F A G +D +V A + T + P W+ + VN+ +
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGI---TRDNFHWKMPLEDWELVLRVNLTGS 112
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 550
FL+ + +R++N GSIV +S L G Y+ S ++GLT+ +A +L
Sbjct: 113 FLVAKAASEAMREKNPGSIVLTASRVYL------GNLGQANYAASMAGVVGLTRTLALEL 166
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
IRVN LAPG +T+ A + E+ E A++ P+GR P E+ FL SD++
Sbjct: 167 GRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATPLGRAGKPLEVAYAALFLLSDES 224
Query: 611 SYITGEVIVAAGGM 624
S+ITG+V+ GG
Sbjct: 225 SFITGQVLFVDGGR 238
Score = 163 bits (415), Expect = 6e-46
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 22/197 (11%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
RL K ++T ++ GIG A + + EGA +V +E + +A E + VV
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------GAHPVV 55
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
VA ++ F A G +D +V A + T + P W+ + VN+ +
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGI---TRDNFHWKMPLEDWELVLRVNLTGS 112
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 181
FL+ + +R++N GSIV +S LG Y+ S ++GLT+ +A +L
Sbjct: 113 FLVAKAASEAMREKNPGSIVLTASRVY------LGNLGQANYAASMAGVVGLTRTLALEL 166
Query: 182 ASENIRVNCLAPGITKT 198
IRVN LAPG +T
Sbjct: 167 GRWGIRVNTLAPGFIET 183
Score = 67.9 bits (167), Expect = 8e-13
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G +D +V A + N + W+ + VNL SFL+ + MR+K GSIV
Sbjct: 75 LGRLDGVVHYAGITRDN-FHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVL 133
Query: 752 VSSIGG 757
+S
Sbjct: 134 TASRVY 139
Score = 51.7 bits (125), Expect = 2e-07
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ S + GLT+ +A +L IRVN LAPG I T
Sbjct: 148 YAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIET 183
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 217 bits (555), Expect = 4e-65
Identities = 69/274 (25%), Positives = 119/274 (43%), Gaps = 29/274 (10%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI------------SSRKESNVNKAVETL 425
++ GKVA +T ++ G G + A L+ EGA ++ ++ + V +
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 426 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 485
+ G +I V + Q + + G +DI+++NAA+ + W
Sbjct: 85 EALGR-RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWR 143
Query: 486 KIFEVNVKSTFLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK 544
+ +VN+ ++ + +P+ + + GGSIV+ SSIGGL + +G Y SK L GL +
Sbjct: 144 DMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMR 203
Query: 545 AVAQDLASENIRVNCLAPGITKT--------------KFAAALYETEEAHEIAVSNVPMG 590
+A +L NIRVN + P T E + + +P+
Sbjct: 204 TMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIP 263
Query: 591 RLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
+ P ++ + FL SDDA YITG + GG
Sbjct: 264 YVE-PADISNAILFLVSDDARYITGVSLPVDGGA 296
Score = 181 bits (462), Expect = 8e-52
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 56
++ GKVA +T ++ G G + A L+ EGA ++ ++ + V +
Sbjct: 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV 84
Query: 57 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 116
+ G +I V + Q + + G +DI+++NAA+ + W
Sbjct: 85 EALGR-RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWR 143
Query: 117 KIFEVNVKSTFLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK 175
+ +VN+ ++ + +P+ + + GGSIV+ SSIGGL + +G Y SK L GL +
Sbjct: 144 DMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLHGLMR 203
Query: 176 AVAQDLASENIRVNCLAPGITKT 198
+A +L NIRVN + P T
Sbjct: 204 TMALELGPRNIRVNIVCPSSVAT 226
Score = 81.1 bits (201), Expect = 7e-17
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK-KGGSIV 750
G +DI+++NAA+ L W + DVNL +++ + +P++ +GGSIV
Sbjct: 115 LGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIV 174
Query: 751 YVSSIGGFK 759
+ SSIGG +
Sbjct: 175 FTSSIGGLR 183
Score = 59.2 bits (144), Expect = 1e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
G Y SK L GL + +A +L P NIRVN + P + T
Sbjct: 189 GNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVAT 226
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 216 bits (553), Expect = 7e-65
Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 18/253 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
KVA+VT + GIG IAK L+ + V+ SR + + + V+ ++ G+ + SG
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAG 100
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
V+KKE+ ++ + +DILV+NA + T + + W+ + N+ S F
Sbjct: 101 DVSKKEEISEVINKILTEHKNVDILVNNAGI---TRDNLFLRMKNDEWEDVLRTNLNSLF 157
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
+TQ + + G I+ +SSI GL G YS SK ++G TK++A++LA
Sbjct: 158 YITQPISKRMINNRYGRIINISSIVGLT-----GNVGQANYSSSKAGVIGFTKSLAKELA 212
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
S NI VN +APG + + +E+ + +SN+P GR+ P+E+ + FL SD +
Sbjct: 213 SRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPAGRMGTPEEVANLACFLSSDKSG 270
Query: 612 YITGEVIVAAGGM 624
YI G V V GG+
Sbjct: 271 YINGRVFVIDGGL 283
Score = 162 bits (413), Expect = 4e-45
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 16/196 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
KVA+VT + GIG IAK L+ + V+ SR + + + V+ ++ G+ + SG
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAG 100
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
V+KKE+ ++ + +DILV+NA + T + + W+ + N+ S F
Sbjct: 101 DVSKKEEISEVINKILTEHKNVDILVNNAGI---TRDNLFLRMKNDEWEDVLRTNLNSLF 157
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
+TQ + + G I+ +SSI GL G YS SK ++G TK++A++LA
Sbjct: 158 YITQPISKRMINNRYGRIINISSIVGLT-----GNVGQANYSSSKAGVIGFTKSLAKELA 212
Query: 183 SENIRVNCLAPGITKT 198
S NI VN +APG +
Sbjct: 213 SRNITVNAIAPGFISS 228
Score = 65.3 bits (160), Expect = 1e-11
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+ +DILV+NA + N + W+ + NL S F +TQ + M + G I
Sbjct: 117 TEHKNVDILVNNAGITRDN-LFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRI 175
Query: 750 VYVSSIGG 757
+ +SSI G
Sbjct: 176 INISSIVG 183
Score = 51.8 bits (125), Expect = 3e-07
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
YS SK + G TK +A++LA NI VN +APG I + M TDK+
Sbjct: 193 YSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISS-------DM--TDKI 234
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 214 bits (548), Expect = 1e-64
Identities = 94/253 (37%), Positives = 140/253 (55%), Gaps = 17/253 (6%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L GKV++VT S+ GIG AIA++L++ G++V+I+ E + + K GV
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
++ +E K FE GIDILV+NA + T + W+++ +VN+ TF
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGI---TRDKLFLRMSLLDWEEVLKVNLTGTF 121
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
L+TQ L + K+ G IV +SS+ G G YS +K L+G TK++A++LA
Sbjct: 122 LVTQNSLRKMIKQRWGRIVNISSVVGFT-----GNVGQVNYSTTKAGLIGFTKSLAKELA 176
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
N+ VN +APG +T A L +EE + +P+GR P+E+ +V FLCS+ AS
Sbjct: 177 PRNVLVNAVAPGFIETDMTAVL--SEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELAS 234
Query: 612 YITGEVIVAAGGM 624
YITGEVI GGM
Sbjct: 235 YITGEVIHVNGGM 247
Score = 161 bits (409), Expect = 4e-45
Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 15/196 (7%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L GKV++VT S+ GIG AIA++L++ G++V+I+ E + + K GV
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
++ +E K FE GIDILV+NA + T + W+++ +VN+ TF
Sbjct: 65 NLLSEESINKAFEEIYNLVDGIDILVNNAGI---TRDKLFLRMSLLDWEEVLKVNLTGTF 121
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
L+TQ L + K+ G IV +SS+ G G YS +K L+G TK++A++LA
Sbjct: 122 LVTQNSLRKMIKQRWGRIVNISSVVGFT-----GNVGQVNYSTTKAGLIGFTKSLAKELA 176
Query: 183 SENIRVNCLAPGITKT 198
N+ VN +APG +T
Sbjct: 177 PRNVLVNAVAPGFIET 192
Score = 64.8 bits (159), Expect = 1e-11
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
L GIDILV+NA + + S + W+++ VNL +FL+TQ L M K++ G I
Sbjct: 81 NLVDGIDILVNNAGITRDK-LFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRI 139
Query: 750 VYVSSIGG 757
V +SS+ G
Sbjct: 140 VNISSVVG 147
Score = 51.7 bits (125), Expect = 2e-07
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
YS +K L G TK +A++LAP N+ VN +APG I T M T L
Sbjct: 157 YSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIET-------DM--TAVL 198
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 215 bits (551), Expect = 1e-64
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 33/278 (11%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI----------------SSRKESNVNKA 421
R+ GKVA VT ++ G G + A RL+ EGA ++ + ++ +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 422 VETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPE 481
+ ++ +I V + + + ++ G +DI+V+NA + + + E
Sbjct: 68 ADLVKGHNR-RIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSE 126
Query: 482 NVWDKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 540
W ++ ++N+ + + +P++ GGSI+ SS+GGL + G Y +K ++
Sbjct: 127 EDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVV 186
Query: 541 GLTKAVAQDLASENIRVNCLAPGITKT--------------KFAAALYETEEAHEIAVSN 586
GL +A +L IRVN + P KT +
Sbjct: 187 GLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHT 246
Query: 587 VPMGRLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
+P+ + P ++ V F SD+A YITG + G
Sbjct: 247 LPIPWVE-PIDISNAVLFFASDEARYITGVTLPIDAGS 283
Score = 182 bits (463), Expect = 3e-52
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI----------------SSRKESNVNKA 52
R+ GKVA VT ++ G G + A RL+ EGA ++ + ++ +
Sbjct: 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAET 67
Query: 53 VETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPE 112
+ ++ +I V + + + ++ G +DI+V+NA + + + E
Sbjct: 68 ADLVKGHNR-RIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSE 126
Query: 113 NVWDKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 171
W ++ ++N+ + + +P++ GGSI+ SS+GGL + G Y +K ++
Sbjct: 127 EDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVV 186
Query: 172 GLTKAVAQDLASENIRVNCLAPGITKT 198
GL +A +L IRVN + P KT
Sbjct: 187 GLMRAFGVELGQHMIRVNSVHPTHVKT 213
Score = 80.7 bits (200), Expect = 6e-17
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK-KGGSIV 750
G +DI+V+NA + + L + SE W ++ D+NL + + +P+M +GGSI+
Sbjct: 102 LGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSII 161
Query: 751 YVSSIGGFK 759
SS+GG K
Sbjct: 162 LTSSVGGLK 170
Score = 59.5 bits (145), Expect = 8e-10
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+ G Y +K + GL + +L IRVN + P ++T
Sbjct: 172 YPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKT 213
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 214 bits (548), Expect = 2e-64
Identities = 83/253 (32%), Positives = 132/253 (52%), Gaps = 18/253 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L +VA+VT +S GIG AIA L+ GA V+ ++ E+ ++ G + G V
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVL 84
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
+V L E K+FG +++LV+NA + T + ++ WD + + N+K+ F
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGI---TQDQLAMRMKDDEWDAVIDTNLKAVF 141
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
L++ VL + K GG IV ++S+ G A G Y+ +K + G+T+A+A+++
Sbjct: 142 RLSRAVLRPMMKARGGRIVNITSVVGSA-----GNPGQVNYAAAKAGVAGMTRALAREIG 196
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
S I VNC+APG T L +E + +P+GRL P+++ VAFL S A
Sbjct: 197 SRGITVNCVAPGFIDTDMTKGL--PQEQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAG 254
Query: 612 YITGEVIVAAGGM 624
YITG + GGM
Sbjct: 255 YITGTTLHVNGGM 267
Score = 161 bits (409), Expect = 7e-45
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L +VA+VT +S GIG AIA L+ GA V+ ++ E+ ++ G + G V
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL-EGRGAVL 84
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
+V L E K+FG +++LV+NA + T + ++ WD + + N+K+ F
Sbjct: 85 NVNDATAVDALVESTLKEFGALNVLVNNAGI---TQDQLAMRMKDDEWDAVIDTNLKAVF 141
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
L++ VL + K GG IV ++S+ G A G Y+ +K + G+T+A+A+++
Sbjct: 142 RLSRAVLRPMMKARGGRIVNITSVVGSA-----GNPGQVNYAAAKAGVAGMTRALAREIG 196
Query: 183 SENIRVNCLAPGITKT 198
S I VNC+APG T
Sbjct: 197 SRGITVNCVAPGFIDT 212
Score = 64.5 bits (158), Expect = 2e-11
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
K +G +++LV+NA + + + WD + D NLK+ F L++ VL M K +GG I
Sbjct: 101 KEFGALNVLVNNAGITQDQ-LAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRI 159
Query: 750 VYVSSIGG 757
V ++S+ G
Sbjct: 160 VNITSVVG 167
Score = 51.8 bits (125), Expect = 3e-07
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ +K + G+T+ +A ++ I VNC+APG I T M T L
Sbjct: 177 YAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDT-------DM--TKGL 218
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 214 bits (547), Expect = 2e-64
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 25/262 (9%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKIS--- 434
RL +A+VT + GIG A++ RL+ EGA+V + + V L G ++
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 435 ---GVVCHVAKKEDRQKLFEHAEKKFGGI-DILVSNAAVNPAT--GPVVECPENVWDKIF 488
V++ + L E + F ++VS A + T ++ E+ WDK+
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI---TQDEFLLHMSEDDWDKVI 120
Query: 489 EVNVKSTFLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGL 542
VN+K TFL+TQ + GSI+ +SSI G +G Y+ SK ++GL
Sbjct: 121 AVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK-----VGNVGQTNYAASKAGVIGL 175
Query: 543 TKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIV 602
T+ A++L IR N + PG T + ++ + +PMG L P+++ +V
Sbjct: 176 TQTAARELGRHGIRCNSVLPGFIATPMTQKV--PQKVVDKITEMIPMGHLGDPEDVADVV 233
Query: 603 AFLCSDDASYITGEVIVAAGGM 624
AFL S+D+ YITG + GG+
Sbjct: 234 AFLASEDSGYITGTSVEVTGGL 255
Score = 159 bits (405), Expect = 3e-44
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 23/205 (11%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKIS--- 65
RL +A+VT + GIG A++ RL+ EGA+V + + V L G ++
Sbjct: 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG 63
Query: 66 ---GVVCHVAKKEDRQKLFEHAEKKFGGI-DILVSNAAVNPAT--GPVVECPENVWDKIF 119
V++ + L E + F ++VS A + T ++ E+ WDK+
Sbjct: 64 NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI---TQDEFLLHMSEDDWDKVI 120
Query: 120 EVNVKSTFLLTQEVLPY-IRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGL 173
VN+K TFL+TQ + GSI+ +SSI G +G Y+ SK ++GL
Sbjct: 121 AVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVG-----KVGNVGQTNYAASKAGVIGL 175
Query: 174 TKAVAQDLASENIRVNCLAPGITKT 198
T+ A++L IR N + PG T
Sbjct: 176 TQTAARELGRHGIRCNSVLPGFIAT 200
Score = 58.0 bits (141), Expect = 2e-09
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 690 KLYGGI-DILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKK-GG 747
+ ++VS A + L+ SE WDK+ VNLK +FL+TQ + G
Sbjct: 87 ACFSRPPSVVVSCAGITQDE-FLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRG 145
Query: 748 SIVYVSSIGG 757
SI+ +SSI G
Sbjct: 146 SIINISSIVG 155
Score = 52.2 bits (126), Expect = 2e-07
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK + GLT+ A +L IR N + PG I T
Sbjct: 165 YAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIAT 200
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 213 bits (546), Expect = 2e-64
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 16/243 (6%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+ +VT GIG I G V E K KE + VA
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE----KRSADFAKERP-NLFYFHGDVA 57
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
+K E+A +K ID+LV+NA + G + +D I V +K+ + L++
Sbjct: 58 DPLTLKKFVEYAMEKLQRIDVLVNNACRG-SKGILSSLLYEEFDYILSVGLKAPYELSRL 116
Query: 502 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 561
+ K N G I+ ++S AY+ +K ++ LT A+A L ++ VNC+A
Sbjct: 117 CRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIA 174
Query: 562 PGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVIVAA 621
PG E +E + + +P G++ P ++ +V FLC D +ITGE I+
Sbjct: 175 PGWINVT------EQQEFTQEDCAAIPAGKVGTPKDISNMVLFLCQQD--FITGETIIVD 226
Query: 622 GGM 624
GGM
Sbjct: 227 GGM 229
Score = 166 bits (423), Expect = 5e-47
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+ +VT GIG I G V E K KE + VA
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDE----KRSADFAKERP-NLFYFHGDVA 57
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
+K E+A +K ID+LV+NA + G + +D I V +K+ + L++
Sbjct: 58 DPLTLKKFVEYAMEKLQRIDVLVNNACRG-SKGILSSLLYEEFDYILSVGLKAPYELSRL 116
Query: 133 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 192
+ K N G I+ ++S AY+ +K ++ LT A+A L ++ VNC+A
Sbjct: 117 CRDELIK-NKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIA 174
Query: 193 PGITKT 198
PG
Sbjct: 175 PGWINV 180
Score = 75.6 bits (187), Expect = 2e-15
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
ID+LV+NA L +D I V LK+ + L++ + K K G I+
Sbjct: 73 LQRIDVLVNNACRGSKG-ILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIIN 130
Query: 752 VSSIGGF 758
++S F
Sbjct: 131 IASTRAF 137
Score = 51.3 bits (124), Expect = 3e-07
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ +K + LT +A L P ++ VNC+APG I
Sbjct: 145 AYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINV 180
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 213 bits (546), Expect = 2e-64
Identities = 80/253 (31%), Positives = 139/253 (54%), Gaps = 18/253 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L KVA+VT +S GIGF +A L+++GA+VV ++ +++ K +++++G K G+V
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-FKARGLVL 61
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
+++ E Q F + + IDILV+NA + T ++ E+ W + N+ S F
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGI---TRDNLMMRMSEDEWQSVINTNLSSIF 118
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDLA 551
+++E + + K+ G I+ + S+ G A G Y +K ++G +K++A ++A
Sbjct: 119 RMSKECVRGMMKKRWGRIISIGSVVGSA-----GNPGQTNYCAAKAGVIGFSKSLAYEVA 173
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
S NI VN +APG T L T+E + +P G++ P ++ VAFL S++A
Sbjct: 174 SRNITVNVVAPGFIATDMTDKL--TDEQKSFIATKIPSGQIGEPKDIAAAVAFLASEEAK 231
Query: 612 YITGEVIVAAGGM 624
YITG+ + GGM
Sbjct: 232 YITGQTLHVNGGM 244
Score = 159 bits (406), Expect = 1e-44
Identities = 61/196 (31%), Positives = 109/196 (55%), Gaps = 16/196 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L KVA+VT +S GIGF +A L+++GA+VV ++ +++ K +++++G K G+V
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-FKARGLVL 61
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
+++ E Q F + + IDILV+NA + T ++ E+ W + N+ S F
Sbjct: 62 NISDIESIQNFFAEIKAENLAIDILVNNAGI---TRDNLMMRMSEDEWQSVINTNLSSIF 118
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDLA 182
+++E + + K+ G I+ + S+ G A G Y +K ++G +K++A ++A
Sbjct: 119 RMSKECVRGMMKKRWGRIISIGSVVGSA-----GNPGQTNYCAAKAGVIGFSKSLAYEVA 173
Query: 183 SENIRVNCLAPGITKT 198
S NI VN +APG T
Sbjct: 174 SRNITVNVVAPGFIAT 189
Score = 64.4 bits (158), Expect = 1e-11
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
IDILV+NA + N ++ SE W + + NL S F +++E + M KK+ G I
Sbjct: 78 AENLAIDILVNNAGITRDN-LMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRI 136
Query: 750 VYVSSIGG 757
+ + S+ G
Sbjct: 137 ISIGSVVG 144
Score = 51.7 bits (125), Expect = 2e-07
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y +K + G +K +A ++A NI VN +APG I T M TDKL
Sbjct: 154 YCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIAT-------DM--TDKL 195
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 213 bits (545), Expect = 3e-64
Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 16/251 (6%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
L K + A+ GIG ++ L + + N E I+
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 438 CHVAKK-EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V + +KL + + +DIL++ A + ++ ++ +N
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGI---------LDDHQIERTIAINFTGLV 112
Query: 497 LLTQEVLPYIRKRNGGS---IVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 553
T +L + KR GG I + S+ G + YS SK A++ T ++A+
Sbjct: 113 NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT 172
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
+ + PGIT+T + + ++ G +
Sbjct: 173 GVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQNFVKAIEANK--- 229
Query: 614 TGEVIVAAGGM 624
G + G
Sbjct: 230 NGAIWKLDLGT 240
Score = 185 bits (473), Expect = 5e-54
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 13/207 (6%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
LT K + A+ GIG ++ L + + N E I+
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 69 CHVAKK-EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V + +KL + + +DIL++ A + ++ ++ +N
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGI---------LDDHQIERTIAINFTGLV 112
Query: 128 LLTQEVLPYIRKRNGGS---IVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE 184
T +L + KR GG I + S+ G + YS SK A++ T ++A+
Sbjct: 113 NTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFTNSLAKLAPIT 172
Query: 185 NIRVNCLAPGITKTKFAAAKKEVKKKE 211
+ + PGIT+T E
Sbjct: 173 GVTAYSINPGITRTPLVHTFNSWLDVE 199
Score = 68.1 bits (167), Expect = 9e-13
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGS- 748
+DIL++ A + ++ ++ +N T +L + K+KGG
Sbjct: 80 DQLKTVDILINGAGILDDHQ---------IERTIAINFTGLVNTTTAILDFWDKRKGGPG 130
Query: 749 --IVYVSSIGGFK 759
I + S+ GF
Sbjct: 131 GIIANICSVTGFN 143
Score = 55.0 bits (133), Expect = 2e-08
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDK 690
YS SK A+ T +A+ + + PG+ RT + L +
Sbjct: 150 VYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEP 200
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 213 bits (545), Expect = 4e-64
Identities = 90/253 (35%), Positives = 135/253 (53%), Gaps = 21/253 (8%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L GKVA+VT +S GIG AIA+ L+ GA V+ ++ ES + L G G+
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGK----GMAL 62
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
+V E + + + +FGG+DILV+NA + T ++ E W I E N+ S F
Sbjct: 63 NVTNPESIEAVLKAITDEFGGVDILVNNAGI---TRDNLLMRMKEEEWSDIMETNLTSIF 119
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDLA 551
L++ VL + K+ G I+ V S+ G G Y+ +K ++G TK++A+++A
Sbjct: 120 RLSKAVLRGMMKKRQGRIINVGSVVGTM-----GNAGQANYAAAKAGVIGFTKSMAREVA 174
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
S + VN +APG +T AL +E ++ VP GRL P E+ VAFL S +A+
Sbjct: 175 SRGVTVNTVAPGFIETDMTKAL--NDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAA 232
Query: 612 YITGEVIVAAGGM 624
YITGE + GGM
Sbjct: 233 YITGETLHVNGGM 245
Score = 159 bits (406), Expect = 1e-44
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L GKVA+VT +S GIG AIA+ L+ GA V+ ++ ES + L G G+
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGK----GMAL 62
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
+V E + + + +FGG+DILV+NA + T ++ E W I E N+ S F
Sbjct: 63 NVTNPESIEAVLKAITDEFGGVDILVNNAGI---TRDNLLMRMKEEEWSDIMETNLTSIF 119
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDLA 182
L++ VL + K+ G I+ V S+ G G Y+ +K ++G TK++A+++A
Sbjct: 120 RLSKAVLRGMMKKRQGRIINVGSVVGTM-----GNAGQANYAAAKAGVIGFTKSMAREVA 174
Query: 183 SENIRVNCLAPGITKT 198
S + VN +APG +T
Sbjct: 175 SRGVTVNTVAPGFIET 190
Score = 64.4 bits (158), Expect = 1e-11
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+GG+DILV+NA + N L+ E W I + NL S F L++ VL M KK+ G I
Sbjct: 79 DEFGGVDILVNNAGITRDN-LLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRI 137
Query: 750 VYVSSIGGF 758
+ V S+ G
Sbjct: 138 INVGSVVGT 146
Score = 52.1 bits (126), Expect = 2e-07
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ +K + G TK +A ++A + VN +APG I T M T L
Sbjct: 155 YAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIET-------DM--TKAL 196
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 213 bits (544), Expect = 5e-64
Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 18/258 (6%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLS---TEGASVVISSRKESNVNKAVETLQKEGHQ- 431
A L V V+T +S G G A+A +L+ + G+ +++S+R ES + + E L +
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 432 KISGVVCHVAKKEDRQKLFEHAEKKFG----GIDILVSNAAV--NPATGPVVECPENVWD 485
K+ + + Q+L + +L++NAA + + G + +
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 486 KIFEVNVKSTFLLTQEVLPYIRKRNG--GSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
+ +N+ S LT L + G ++V +SS+ L P+K G Y K A L
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYET---EEAHEIAVSNVPMGRLAVPDEMGG 600
+ +A + ++RV APG ET E G L
Sbjct: 181 QVLAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQ 238
Query: 601 IVAFLCSDDASYITGEVI 618
+ L D ++ +G +
Sbjct: 239 KLLGLLQKD-TFQSGAHV 255
Score = 181 bits (461), Expect = 3e-52
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 14/217 (6%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLS---AEGASVVISSRKESNVNKAVETLQKEGHQ- 62
A L V V+T +S G G A+A +L+ + G+ +++S+R ES + + E L +
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 63 KISGVVCHVAKKEDRQKLFEHAEKKFG----GIDILVSNAAV--NPATGPVVECPENVWD 116
K+ + + Q+L + +L++NAA + + G + +
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 117 KIFEVNVKSTFLLTQEVLPYIRKRNG--GSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 174
+ +N+ S LT L + G ++V +SS+ L P+K G Y K A L
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180
Query: 175 KAVAQDLASENIRVNCLAPGITKTKFAAAKKEVKKKE 211
+ +A + ++RV APG +E K
Sbjct: 181 QVLAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDP 215
Score = 71.2 bits (175), Expect = 7e-14
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 693 GGIDILVSNAAV--NPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKG--GS 748
+L++NAA + + L + + +NL S LT L + G +
Sbjct: 91 LQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKT 150
Query: 749 IVYVSSIGGFKQFK 762
+V +SS+ + +K
Sbjct: 151 VVNISSLCALQPYK 164
Score = 51.2 bits (123), Expect = 4e-07
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 638 IGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
G Y K A L +V+A + ++RV APG +
Sbjct: 166 WGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLA 208
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 214 bits (547), Expect = 6e-64
Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 9/250 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVET---LQKEGHQKIS 434
+L GK ++T GIG A++ + EGA++ I+ E A ET ++KEG K
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG--DANETKQYVEKEG-VKCV 100
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
+ ++ ++ + + + ++ G ++ILV+N A + +K F +N+ S
Sbjct: 101 LLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFS 160
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
F +T+ L ++++ G I+ +SI + L YS +K A++ T++++Q L +
Sbjct: 161 YFHVTKAALSHLKQ--GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKG 218
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
IRVN +APG T + + E+ SNVPM R P E+ +L S D+SY+T
Sbjct: 219 IRVNGVAPGPIWTPLIPSSF-DEKKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVT 277
Query: 615 GEVIVAAGGM 624
G++I GG+
Sbjct: 278 GQMIHVNGGV 287
Score = 166 bits (424), Expect = 1e-46
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVET---LQKEGHQKIS 65
+L GK ++T GIG A++ + EGA++ I+ E A ET ++KEG K
Sbjct: 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG--DANETKQYVEKEG-VKCV 100
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 125
+ ++ ++ + + + ++ G ++ILV+N A + +K F +N+ S
Sbjct: 101 LLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFS 160
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
F +T+ L ++++ G I+ +SI + L YS +K A++ T++++Q L +
Sbjct: 161 YFHVTKAALSHLKQ--GDVIINTASIVAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKG 218
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKET 212
IRVN +APG T + + KK
Sbjct: 219 IRVNGVAPGPIWTPLIPSSFDEKKVSQ 245
Score = 77.6 bits (192), Expect = 9e-16
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G ++ILV+N A + L + +K F +N+ S F +T+ L ++ K+G I+
Sbjct: 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHL--KQGDVIIN 180
Query: 752 VSSIGGFK 759
+SI ++
Sbjct: 181 TASIVAYE 188
Score = 49.8 bits (120), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
YS +K A+ T+ +++ L + IRVN +APG I T
Sbjct: 196 YSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWT 231
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 211 bits (541), Expect = 1e-63
Identities = 88/255 (34%), Positives = 143/255 (56%), Gaps = 19/255 (7%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGV 436
+L GK A+VT SS G+G AIA +L GA++V++ S ++++ E + G +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI-NVVVA 60
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKS 494
V ED + + + A FG IDILV+NA + T +++ E WD + N+KS
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI---TRDTLMLKMSEKDWDDVLNTNLKS 117
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQD 549
+L T+ V + K+ G I+ ++SI G+ G Y+ SK L+G TK++A++
Sbjct: 118 AYLCTKAVSKIMLKQKSGKIINITSIAGII-----GNAGQANYAASKAGLIGFTKSIAKE 172
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
A++ I N +APGI KT L ++ E+ ++N+P+ R P+E+ +V FL SDD
Sbjct: 173 FAAKGIYCNAVAPGIIKTDMTDVL--PDKVKEMYLNNIPLKRFGTPEEVANVVGFLASDD 230
Query: 610 ASYITGEVIVAAGGM 624
++YITG+VI GG+
Sbjct: 231 SNYITGQVINIDGGL 245
Score = 158 bits (402), Expect = 4e-44
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGV 67
+L GK A+VT SS G+G AIA +L GA++V++ S ++++ E + G +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGI-NVVVA 60
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKS 125
V ED + + + A FG IDILV+NA + T +++ E WD + N+KS
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI---TRDTLMLKMSEKDWDDVLNTNLKS 117
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQD 180
+L T+ V + K+ G I+ ++SI G+ G Y+ SK L+G TK++A++
Sbjct: 118 AYLCTKAVSKIMLKQKSGKIINITSIAGII-----GNAGQANYAASKAGLIGFTKSIAKE 172
Query: 181 LASENIRVNCLAPGITKT 198
A++ I N +APGI KT
Sbjct: 173 FAAKGIYCNAVAPGIIKT 190
Score = 66.0 bits (162), Expect = 4e-12
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G IDILV+NA + +++ SE WD + + NLKS++L T+ V M K+K G I+
Sbjct: 81 FGRIDILVNNAGITRDT-LMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIIN 139
Query: 752 VSSIGG 757
++SI G
Sbjct: 140 ITSIAG 145
Score = 51.3 bits (124), Expect = 3e-07
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ SK L G TK +A++ A + I N +APG+I+T M TD L
Sbjct: 155 YAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKT-------DM--TDVL 196
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 211 bits (541), Expect = 1e-63
Identities = 70/254 (27%), Positives = 123/254 (48%), Gaps = 17/254 (6%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
++ ++A VT GIG +I +RL +G VV S QK
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
+V + ++ F+ + + G ID+LV+NA + T + W + + N+ S
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI---TRDVVFRKMTREDWQAVIDTNLTSL 126
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDL 550
F +T++V+ + +R G I+ +SS+ G G YS +K + G T ++AQ++
Sbjct: 127 FNVTKQVIDGMVERGWGRIINISSVNGQK-----GQFGQTNYSTAKAGIHGFTMSLAQEV 181
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
A++ + VN ++PG T A+ + E V+ +P+ RL PDE+G IVA+L S+++
Sbjct: 182 ATKGVTVNTVSPGYIGTDMVKAI--RPDVLEKIVATIPVRRLGSPDEIGSIVAWLASEES 239
Query: 611 SYITGEVIVAAGGM 624
+ TG GG+
Sbjct: 240 GFSTGADFSLNGGL 253
Score = 155 bits (395), Expect = 4e-43
Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 16/210 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
++ ++A VT GIG +I +RL +G VV S QK
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
+V + ++ F+ + + G ID+LV+NA + T + W + + N+ S
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI---TRDVVFRKMTREDWQAVIDTNLTSL 126
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDL 181
F +T++V+ + +R G I+ +SS+ G G YS +K + G T ++AQ++
Sbjct: 127 FNVTKQVIDGMVERGWGRIINISSVNGQK-----GQFGQTNYSTAKAGIHGFTMSLAQEV 181
Query: 182 ASENIRVNCLAPGITKTKFAAA-KKEVKKK 210
A++ + VN ++PG T A + +V +K
Sbjct: 182 ATKGVTVNTVSPGYIGTDMVKAIRPDVLEK 211
Score = 64.9 bits (159), Expect = 1e-11
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G ID+LV+NA + + + W + D NL S F +T++V+ M ++ G I+
Sbjct: 89 VGEIDVLVNNAGITRDV-VFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIIN 147
Query: 752 VSSIGGFK 759
+SS+ G K
Sbjct: 148 ISSVNGQK 155
Score = 50.2 bits (121), Expect = 8e-07
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTD 689
YS +K + G T +A+++A + + VN ++PG I T M+ + D
Sbjct: 163 YSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTD----MVKAIRPD 207
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 210 bits (538), Expect = 3e-63
Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 19/254 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 437
L GKVA+VT +S GIG AIA L+ +GA+VV++ + E N+ V+ ++K G V
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG-SDAIAVR 60
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
VA ED + + FG +DILV+NA V T ++ E WD + N+K
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV---TKDNLLMRMKEEEWDTVINTNLKGV 117
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDL 550
FL T+ V ++ ++ G IV ++S+ G+ G Y +K ++GLTK A++L
Sbjct: 118 FLCTKAVSRFMMRQRHGRIVNIASVVGVT-----GNPGQANYVAAKAGVIGLTKTSAKEL 172
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
AS NI VN +APG T L E + +P + ++ V F SD +
Sbjct: 173 ASRNITVNAIAPGFIATDMTDVL--DENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQS 230
Query: 611 SYITGEVIVAAGGM 624
YITG+ + GGM
Sbjct: 231 KYITGQTLNVDGGM 244
Score = 156 bits (398), Expect = 1e-43
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 17/197 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 68
L GKVA+VT +S GIG AIA L+ +GA+VV++ + E N+ V+ ++K G V
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG-SDAIAVR 60
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
VA ED + + FG +DILV+NA V T ++ E WD + N+K
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV---TKDNLLMRMKEEEWDTVINTNLKGV 117
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQDL 181
FL T+ V ++ ++ G IV ++S+ G+ G Y +K ++GLTK A++L
Sbjct: 118 FLCTKAVSRFMMRQRHGRIVNIASVVGVT-----GNPGQANYVAAKAGVIGLTKTSAKEL 172
Query: 182 ASENIRVNCLAPGITKT 198
AS NI VN +APG T
Sbjct: 173 ASRNITVNAIAPGFIAT 189
Score = 65.2 bits (160), Expect = 7e-12
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
++G +DILV+NA V N L+ E WD + + NLK FL T+ V +M +++ G I
Sbjct: 78 DVFGQVDILVNNAGVTKDN-LLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRI 136
Query: 750 VYVSSIGG 757
V ++S+ G
Sbjct: 137 VNIASVVG 144
Score = 51.3 bits (124), Expect = 3e-07
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y +K + GLTK A++LA NI VN +APG I T M TD L
Sbjct: 154 YVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIAT-------DM--TDVL 195
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 211 bits (540), Expect = 3e-63
Identities = 75/268 (27%), Positives = 129/268 (48%), Gaps = 18/268 (6%)
Query: 365 TSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVET 424
T T S A +VA VT G+G AI++RL G +V +S + ++
Sbjct: 9 MGTLEAQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLM 68
Query: 425 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPEN 482
+++ + VA E ++ E FG +D+L++NA + T ++ +
Sbjct: 69 HERDAGRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI---TRDATFMKMTKG 125
Query: 483 VWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKT 537
WD + ++ + F +T++ + + +R G IV + S+ G GA Y+ +K
Sbjct: 126 DWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-----GAFGQANYASAKA 180
Query: 538 ALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIA-VSNVPMGRLAVPD 596
+ G TK +A + A I VN ++PG T A+ ++ E + +P+GRL PD
Sbjct: 181 GIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV--PQDVLEAKILPQIPVGRLGRPD 238
Query: 597 EMGGIVAFLCSDDASYITGEVIVAAGGM 624
E+ ++AFLCSDDA ++TG + GGM
Sbjct: 239 EVAALIAFLCSDDAGFVTGADLAINGGM 266
Score = 156 bits (398), Expect = 2e-43
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
S +VA VT G+G AI++RL G +V +S + ++ +++ +
Sbjct: 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKA 79
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVK 124
VA E ++ E FG +D+L++NA + T ++ + WD + ++
Sbjct: 80 YAVDVADFESCERCAEKVLADFGKVDVLINNAGI---TRDATFMKMTKGDWDAVMRTDLD 136
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLTKAVAQ 179
+ F +T++ + + +R G IV + S+ G GA Y+ +K + G TK +A
Sbjct: 137 AMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-----GAFGQANYASAKAGIHGFTKTLAL 191
Query: 180 DLASENIRVNCLAPGITKT 198
+ A I VN ++PG T
Sbjct: 192 ETAKRGITVNTVSPGYLAT 210
Score = 64.5 bits (158), Expect = 1e-11
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +D+L++NA + ++ ++ WD + +L + F +T++ + M +++ G IV
Sbjct: 101 FGKVDVLINNAGITRDA-TFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVN 159
Query: 752 VSSIGGFK 759
+ S+ G +
Sbjct: 160 IGSVNGSR 167
Score = 50.6 bits (122), Expect = 6e-07
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI 695
Y+ +K + G TK +A + A I VN ++PG + T M+ + D L I
Sbjct: 175 YASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATA----MVEAVPQDVLEAKI 225
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 210 bits (537), Expect = 4e-63
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 18/251 (7%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVVCHV 440
+ A++T +S GIG AIA RL+ +G ++ I + + E ++ G ++ + ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTFLL 498
+ E L A + GG+D LV+NA + T +V + W+ + E N+ + F
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGI---TRDTLLVRMKDEDWEAVLEANLSAVFRT 118
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLASE 553
T+E + + K G IV ++S+ G+ G Y SK L+G T+AVA++ A
Sbjct: 119 TREAVKLMMKARFGRIVNITSVVGIL-----GNPGQANYVASKAGLIGFTRAVAKEYAQR 173
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
I VN +APG +T+ L +E E + +P GR P+E+ VAFL S+ A YI
Sbjct: 174 GITVNAVAPGFIETEMTERL--PQEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYI 231
Query: 614 TGEVIVAAGGM 624
TG+ + GG+
Sbjct: 232 TGQTLCVDGGL 242
Score = 154 bits (392), Expect = 8e-43
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVVCHV 71
+ A++T +S GIG AIA RL+ +G ++ I + + E ++ G ++ + ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 72 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTFLL 129
+ E L A + GG+D LV+NA + T +V + W+ + E N+ + F
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGI---TRDTLLVRMKDEDWEAVLEANLSAVFRT 118
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLASE 184
T+E + + K G IV ++S+ G+ G Y SK L+G T+AVA++ A
Sbjct: 119 TREAVKLMMKARFGRIVNITSVVGIL-----GNPGQANYVASKAGLIGFTRAVAKEYAQR 173
Query: 185 NIRVNCLAPGITKT 198
I VN +APG +T
Sbjct: 174 GITVNAVAPGFIET 187
Score = 64.8 bits (159), Expect = 1e-11
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
++ GG+D LV+NA + LV + W+ + + NL + F T+E + M K + G I
Sbjct: 76 EVLGGLDTLVNNAGITRDT-LLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRI 134
Query: 750 VYVSSIGG 757
V ++S+ G
Sbjct: 135 VNITSVVG 142
Score = 51.3 bits (124), Expect = 3e-07
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y SK L G T+ VA++ A I VN +APG I T M T++L
Sbjct: 152 YVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIET-------EM--TERL 193
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 211 bits (539), Expect = 6e-63
Identities = 66/286 (23%), Positives = 105/286 (36%), Gaps = 42/286 (14%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
+ VA+VT ++ +G +IA+ L EG +V + R + N TL
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 436 VVCHVAKKEDR-----------------QKLFEHAEKKFGGIDILVSNAAV---NP---- 471
V ++ +L +G D+LV+NA+ P
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 472 ------ATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPY------IRKRNGGSIVYVSS 519
E E +F N + + L + + SI+ +
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 520 IGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEA 579
P Y+++K AL GLT++ A +LA IRVN + PG++ +
Sbjct: 185 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL--VDDM--PPAV 240
Query: 580 HEIAVSNVPM-GRLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
E S VP+ R + E+ +V FLCS A YITG + GG
Sbjct: 241 WEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 286
Score = 160 bits (408), Expect = 1e-44
Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 37/228 (16%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
+ T VA+VT ++ +G +IA+ L AEG +V + R + N TL
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 67 VVCHVAKKEDR-----------------QKLFEHAEKKFGGIDILVSNAAV---NP---- 102
V ++ +L +G D+LV+NA+ P
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 103 ------ATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPY------IRKRNGGSIVYVSS 150
E E +F N + + L + + SI+ +
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 151 IGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
P Y+++K AL GLT++ A +LA IRVN + PG++
Sbjct: 185 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 232
Score = 63.5 bits (155), Expect = 5e-11
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 22/131 (16%)
Query: 650 GLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLS-TDKLYGGIDILVSNAAVNPAN 708
V DL+ A G R +++ +G D+LV+NA+
Sbjct: 60 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPT 119
Query: 709 EPLVECSEVVWD--------------KIFDVNLKSSFLLTQEVLPYMR------KKKGGS 748
PL+ E + +F N + + L + + + S
Sbjct: 120 -PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYS 178
Query: 749 IVYVSSIGGFK 759
I+ + +
Sbjct: 179 IINMVDAMTNQ 189
Score = 56.2 bits (136), Expect = 1e-08
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+++K AL GLT+ A +LAP IRVN + PGL
Sbjct: 197 YTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 232
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 212 bits (542), Expect = 6e-63
Identities = 66/286 (23%), Positives = 106/286 (37%), Gaps = 42/286 (14%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 435
+ VA+VT ++ +G +IA+ L EG +V + R + N TL
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 436 VVCHVAKKEDR-----------------QKLFEHAEKKFGGIDILVSNAAV---NP---- 471
V ++ +L +G D+LV+NA+ P
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 472 ------ATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSS 519
E E +F N + + L + + + SI+ +
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 520 IGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEA 579
P Y+++K AL GLT++ A +LA IRVN + PG++ +
Sbjct: 222 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL--VDDM--PPAV 277
Query: 580 HEIAVSNVPM-GRLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
E S VP+ R + E+ +V FLCS A YITG + GG
Sbjct: 278 WEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 323
Score = 162 bits (412), Expect = 1e-44
Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 37/228 (16%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISG 66
+ T VA+VT ++ +G +IA+ L AEG +V + R + N TL
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 67 VVCHVAKKEDR-----------------QKLFEHAEKKFGGIDILVSNAAV---NP---- 102
V ++ +L +G D+LV+NA+ P
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 103 ------ATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSS 150
E E +F N + + L + + + SI+ +
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 151 IGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
P Y+++K AL GLT++ A +LA IRVN + PG++
Sbjct: 222 AMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 269
Score = 63.6 bits (155), Expect = 6e-11
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 22/131 (16%)
Query: 650 GLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAML-STDKLYGGIDILVSNAAVNPAN 708
V DL+ A G R ++ + +G D+LV+NA+
Sbjct: 97 NSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPT 156
Query: 709 EPLVECSEVVWD--------------KIFDVNLKSSFLLTQEVLPYMR------KKKGGS 748
PL+ E + +F N + + L + + + S
Sbjct: 157 -PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYS 215
Query: 749 IVYVSSIGGFK 759
I+ + +
Sbjct: 216 IINMVDAMTNQ 226
Score = 57.1 bits (138), Expect = 7e-09
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+++K AL GLT+ A +LAP IRVN + PGL
Sbjct: 234 YTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 269
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 209 bits (535), Expect = 8e-63
Identities = 78/254 (30%), Positives = 133/254 (52%), Gaps = 19/254 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 437
K A+VT +S GIG +IA +L+ EG +V ++ + + VE ++ +G +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG-VDSFAIQ 60
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
+VA ++ + + + +FG +D+LV+NA + T ++ E WD + + N+K
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI---TRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 550
F Q+ P + ++ G+I+ +SS+ G G Y +K ++GLTK+ A++L
Sbjct: 118 FNCIQKATPQMLRQRSGAIINLSSVVGAV-----GNPGQANYVATKAGVIGLTKSAAREL 172
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
AS I VN +APG + AL ++E E ++ +P+ R ++ VAFL SD A
Sbjct: 173 ASRGITVNAVAPGFIVSDMTDAL--SDELKEQMLTQIPLARFGQDTDIANTVAFLASDKA 230
Query: 611 SYITGEVIVAAGGM 624
YITG+ I GGM
Sbjct: 231 KYITGQTIHVNGGM 244
Score = 155 bits (395), Expect = 3e-43
Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 68
K A+VT +S GIG +IA +L+ EG +V ++ + + VE ++ +G +
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG-VDSFAIQ 60
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
+VA ++ + + + +FG +D+LV+NA + T ++ E WD + + N+K
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI---TRDNLLMRMKEQEWDDVIDTNLKGV 117
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 181
F Q+ P + ++ G+I+ +SS+ G G Y +K ++GLTK+ A++L
Sbjct: 118 FNCIQKATPQMLRQRSGAIINLSSVVGAV-----GNPGQANYVATKAGVIGLTKSAAREL 172
Query: 182 ASENIRVNCLAPGITKT 198
AS I VN +APG +
Sbjct: 173 ASRGITVNAVAPGFIVS 189
Score = 64.4 bits (158), Expect = 1e-11
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+G +D+LV+NA + N L+ E WD + D NLK F Q+ P M +++ G+I
Sbjct: 78 SQFGSLDVLVNNAGITRDN-LLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAI 136
Query: 750 VYVSSIGG 757
+ +SS+ G
Sbjct: 137 INLSSVVG 144
Score = 51.3 bits (124), Expect = 3e-07
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y +K + GLTK A +LA I VN +APG I + M TD L
Sbjct: 154 YVATKAGVIGLTKSAARELASRGITVNAVAPGFIVS-------DM--TDAL 195
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 209 bits (534), Expect = 2e-62
Identities = 82/253 (32%), Positives = 139/253 (54%), Gaps = 21/253 (8%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L G+ A+VT ++ GIG AIA+ +GA V + +E + + L K+
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVF----VFSA 80
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
+++ ++ ++L E AE++ GIDILV+NA + T G V + WD + VN+ +
Sbjct: 81 NLSDRKSIKQLAEVAEREMEGIDILVNNAGI---TRDGLFVRMQDQDWDDVLAVNLTAAS 137
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
LT+E++ + +R G I+ ++SI G+ G Y +K L+G +KA+AQ++A
Sbjct: 138 TLTRELIHSMMRRRYGRIINITSIVGVV-----GNPGQTNYCAAKAGLIGFSKALAQEIA 192
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
S NI VNC+APG K+ L E+ E ++ +PM R+ + +E+ +L SD+A+
Sbjct: 193 SRNITVNCIAPGFIKSAMTDKL--NEKQKEAIMAMIPMKRMGIGEEIAFATVYLASDEAA 250
Query: 612 YITGEVIVAAGGM 624
Y+TG+ + GGM
Sbjct: 251 YLTGQTLHINGGM 263
Score = 156 bits (396), Expect = 4e-43
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 19/196 (9%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
LTG+ A+VT ++ GIG AIA+ A+GA V + +E + + L K+
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVF----VFSA 80
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
+++ ++ ++L E AE++ GIDILV+NA + T G V + WD + VN+ +
Sbjct: 81 NLSDRKSIKQLAEVAEREMEGIDILVNNAGI---TRDGLFVRMQDQDWDDVLAVNLTAAS 137
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
LT+E++ + +R G I+ ++SI G+ G Y +K L+G +KA+AQ++A
Sbjct: 138 TLTRELIHSMMRRRYGRIINITSIVGVV-----GNPGQTNYCAAKAGLIGFSKALAQEIA 192
Query: 183 SENIRVNCLAPGITKT 198
S NI VNC+APG K+
Sbjct: 193 SRNITVNCIAPGFIKS 208
Score = 64.1 bits (157), Expect = 2e-11
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+ GIDILV+NA + V + WD + VNL ++ LT+E++ M +++ G I
Sbjct: 97 REMEGIDILVNNAGITRDGL-FVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRI 155
Query: 750 VYVSSIGGF 758
+ ++SI G
Sbjct: 156 INITSIVGV 164
Score = 51.8 bits (125), Expect = 3e-07
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y +K L G +K +A+++A NI VNC+APG I++ AM TDKL
Sbjct: 173 YCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKS-------AM--TDKL 214
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 209 bits (533), Expect = 2e-62
Identities = 54/250 (21%), Positives = 88/250 (35%), Gaps = 12/250 (4%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
V +T S+ GIG A+ + L+ G +V+ R ++++ + T V +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRET----AVAAVLD 57
Query: 442 KKEDR-----QKLFEHAEKKFGGIDILVSNAAVN-PATGPVVECPENVWDKIFEVNVKST 495
+ G+ + V+ V+ G V +
Sbjct: 58 RCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA 117
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
LP + G + L AY+ SK A+ L + D A +
Sbjct: 118 TQPGAAELPMVEAMLAGDEARAIELAEQQGQTHL-AYAGSKYAVTCLARRNVVDWAGRGV 176
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSN-VPMGRLAVPDEMGGIVAFLCSDDASYIT 614
R+N +APG +T A E P+GR + P E+ +AFL AS+I
Sbjct: 177 RLNVVAPGAVETPLLQASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQASFIH 236
Query: 615 GEVIVAAGGM 624
G V+ GGM
Sbjct: 237 GSVLFVDGGM 246
Score = 151 bits (383), Expect = 2e-41
Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 11/192 (5%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
V +T S+ GIG A+ + L+ G +V+ R ++++ + T V +
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRET----AVAAVLD 57
Query: 73 KKEDR-----QKLFEHAEKKFGGIDILVSNAAVN-PATGPVVECPENVWDKIFEVNVKST 126
+ G+ + V+ V+ G V +
Sbjct: 58 RCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAA 117
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
LP + G + L AY+ SK A+ L + D A +
Sbjct: 118 TQPGAAELPMVEAMLAGDEARAIELAEQQGQTHL-AYAGSKYAVTCLARRNVVDWAGRGV 176
Query: 187 RVNCLAPGITKT 198
R+N +APG +T
Sbjct: 177 RLNVVAPGAVET 188
Score = 63.4 bits (155), Expect = 4e-11
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVEC-SEVVWDKIFDVNLKSSFLLTQEVLPYMR 742
A + G+ + V+ V+ + L E S V ++ LP +
Sbjct: 70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVE 129
Query: 743 KKKGGSIVYVSSIGG 757
G +
Sbjct: 130 AMLAGDEARAIELAE 144
Score = 61.5 bits (150), Expect = 1e-10
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ SK A+ L + D A +R+N +APG + T
Sbjct: 152 AYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVET 188
Score = 39.5 bits (93), Expect = 0.003
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 693 GGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYV 752
G +D LV A V + VN L + + + + + V V
Sbjct: 61 GVLDGLVCCAGVGVTAAN--------SGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIV 112
Query: 753 SSIGGF 758
SI
Sbjct: 113 GSIAAT 118
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 207 bits (529), Expect = 4e-62
Identities = 48/247 (19%), Positives = 93/247 (37%), Gaps = 18/247 (7%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
++ +VT + G+G A+ L G V + R+ ++ + + G+V
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ----RLQQQELLLGNAVIGIVA 56
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
+A ED F A + G ++++ A GPV ++ E N+ ST L+
Sbjct: 57 DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGE-FGPVGVYTAEQIRRVMESNLVSTILV 115
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 558
Q+ + I +R GG + V S Y SK + G +++ +L +R+
Sbjct: 116 AQQTVRLIGER-GGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLV 174
Query: 559 CLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAF-LCSDDASYITGEV 617
L P +++F +V P++ + L + + ++T
Sbjct: 175 NLYPSGIRSEFWDNT-----------DHVDPSGFMTPEDAAAYMLDALEARSSCHVTDLF 223
Query: 618 IVAAGGM 624
I G
Sbjct: 224 IGRNEGH 230
Score = 193 bits (494), Expect = 3e-57
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 6/202 (2%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
++ +VT + G+G A+ L G V + R+ ++ + + G+V
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQ----RLQQQELLLGNAVIGIVA 56
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
+A ED F A + G ++++ A GPV ++ E N+ ST L+
Sbjct: 57 DLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGE-FGPVGVYTAEQIRRVMESNLVSTILV 115
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
Q+ + I +R GG + V S Y SK + G +++ +L +R+
Sbjct: 116 AQQTVRLIGER-GGVLANVLSSAAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLV 174
Query: 190 CLAPGITKTKFAAAKKEVKKKE 211
L P +++F V
Sbjct: 175 NLYPSGIRSEFWDNTDHVDPSG 196
Score = 75.7 bits (187), Expect = 1e-15
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G ++++ A P+ + ++ + NL S+ L+ Q+ + + ++GG +
Sbjct: 75 GGLPELVLHCAGTGEFG-PVGVYTAEQIRRVMESNLVSTILVAQQTVRLIG-ERGGVLAN 132
Query: 752 VSSIGGFK 759
V S
Sbjct: 133 VLSSAAQV 140
Score = 57.2 bits (139), Expect = 3e-09
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
Y SK + G + + +L +R+ L P IR++F D
Sbjct: 146 SLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT 189
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 207 bits (530), Expect = 4e-62
Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 29/262 (11%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
+T + +VT + GIG AIA+RL+ +G V ++ R
Sbjct: 4 TATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS------------GA 51
Query: 430 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKI 487
+ + GV V + + F E+ G +++LVSNA + + ++ E ++K+
Sbjct: 52 PKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL---SADAFLMRMTEEKFEKV 108
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGL 542
N+ F + Q +++ G ++++ S+ GL G Y+ SK ++G+
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL-----WGIGNQANYAASKAGVIGM 163
Query: 543 TKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIV 602
+++A++L+ N+ N +APG T AL E + A+ +P R+ P E+ G+V
Sbjct: 164 ARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIPAKRVGTPAEVAGVV 221
Query: 603 AFLCSDDASYITGEVIVAAGGM 624
+FL S+DASYI+G VI GGM
Sbjct: 222 SFLASEDASYISGAVIPVDGGM 243
Score = 152 bits (386), Expect = 5e-42
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 27/205 (13%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
+T + +VT + GIG AIA+RL+A+G V ++ R
Sbjct: 4 TATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS------------GA 51
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKI 118
+ + GV V + + F E+ G +++LVSNA + + ++ E ++K+
Sbjct: 52 PKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL---SADAFLMRMTEEKFEKV 108
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGL 173
N+ F + Q +++ G ++++ S+ G L G Y+ SK ++G+
Sbjct: 109 INANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG-----LWGIGNQANYAASKAGVIGM 163
Query: 174 TKAVAQDLASENIRVNCLAPGITKT 198
+++A++L+ N+ N +APG T
Sbjct: 164 ARSIARELSKANVTANVVAPGYIDT 188
Score = 62.9 bits (154), Expect = 3e-11
Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G +++LVSNA ++ L+ +E ++K+ + NL +F + Q M++ K G +++
Sbjct: 79 QGPVEVLVSNAGLSADAF-LMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIF 137
Query: 752 VSSIGG 757
+ S+ G
Sbjct: 138 IGSVSG 143
Score = 50.2 bits (121), Expect = 6e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK + G+ + +A +L+ N+ N +APG I T
Sbjct: 153 YAASKAGVIGMARSIARELSKANVTANVVAPGYIDT 188
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 207 bits (529), Expect = 8e-62
Identities = 80/261 (30%), Positives = 126/261 (48%), Gaps = 29/261 (11%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
S+ + + +VT + GIG AIA+ + G V I+ R E
Sbjct: 11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG------------EPP 58
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIF 488
+ V C + E ++ ++ E+ G +++L++NA V T ++ E + +
Sbjct: 59 EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV---TKDQLLMRMSEEDFTSVV 115
Query: 489 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLT 543
E N+ TF + + + + G +V +SS+ GL LG+ Y+ SK L+G
Sbjct: 116 ETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGL-----LGSAGQANYAASKAGLVGFA 170
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVA 603
+++A++L S NI N +APG T L T+E VS VP+GR A P+E+ V
Sbjct: 171 RSLARELGSRNITFNVVAPGFVDTDMTKVL--TDEQRANIVSQVPLGRYARPEEIAATVR 228
Query: 604 FLCSDDASYITGEVIVAAGGM 624
FL SDDASYITG VI GG+
Sbjct: 229 FLASDDASYITGAVIPVDGGL 249
Score = 151 bits (385), Expect = 9e-42
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
S+ + + +VT + GIG AIA+ + G V I+ R E
Sbjct: 11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG------------EPP 58
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIF 119
+ V C + E ++ ++ E+ G +++L++NA V T ++ E + +
Sbjct: 59 EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV---TKDQLLMRMSEEDFTSVV 115
Query: 120 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA-----YSVSKTALLGLT 174
E N+ TF + + + + G +V +SS+ G LLG+ Y+ SK L+G
Sbjct: 116 ETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVG-----LLGSAGQANYAASKAGLVGFA 170
Query: 175 KAVAQDLASENIRVNCLAPGITKT 198
+++A++L S NI N +APG T
Sbjct: 171 RSLARELGSRNITFNVVAPGFVDT 194
Score = 63.0 bits (154), Expect = 4e-11
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +++L++NA V L+ SE + + + NL +F + + M + K G +V
Sbjct: 85 HGPVEVLIANAGVTKDQL-LMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVL 143
Query: 752 VSSIGG 757
+SS+ G
Sbjct: 144 ISSVVG 149
Score = 50.6 bits (122), Expect = 6e-07
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ SK L G + +A +L NI N +APG + T M T L
Sbjct: 159 YAASKAGLVGFARSLARELGSRNITFNVVAPGFVDT-------DM--TKVL 200
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 207 bits (528), Expect = 9e-62
Identities = 65/273 (23%), Positives = 98/273 (35%), Gaps = 56/273 (20%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+ V++ + GIG A K L G +V +++ V+ ++
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA------------------EVIADLS 43
Query: 442 KKEDRQKLFEHA-EKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 500
E R++ K G+D LV A + P T + VN L
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV--------LGNVVSVNYFGATELMD 95
Query: 501 EVLPYIRKRNGGSIVYVSSIGG----------------------------LAPFKLLGAY 532
LP ++K + + V +SS+ AY
Sbjct: 96 AFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAY 155
Query: 533 SVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSN-VPMGR 591
+ SK AL + A +R+N +APG T+T A + E PMGR
Sbjct: 156 AGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVPPMGR 215
Query: 592 LAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
A P EM ++AFL S ASY+ G IV GG+
Sbjct: 216 RAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248
Score = 149 bits (377), Expect = 1e-40
Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 55/215 (25%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+ V++ + GIG A K L A G +V +++ V+ ++
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA------------------EVIADLS 43
Query: 73 KKEDRQKLFEHA-EKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 131
E R++ K G+D LV A + P T + VN L
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV--------LGNVVSVNYFGATELMD 95
Query: 132 EVLPYIRKRNGGSIVYVSSIGG----------------------------LAPFKLLGAY 163
LP ++K + + V +SS+ AY
Sbjct: 96 AFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAY 155
Query: 164 SVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
+ SK AL + A +R+N +APG T+T
Sbjct: 156 AGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATET 190
Score = 66.6 bits (163), Expect = 3e-12
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 653 KVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLV 712
++V D+ + + + T G + K G+D LV A + P +
Sbjct: 27 QIVGIDIRDAEVIAD------LSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV-- 78
Query: 713 ECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGF 758
+ VN + L LP ++K + V +SS+
Sbjct: 79 ------LGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA 118
Score = 63.1 bits (154), Expect = 4e-11
Identities = 15/79 (18%), Positives = 29/79 (36%)
Query: 598 MGGIVAFLCSDDASYITGEVIVAAGGMQSRLTKSTVEFRFIGAYSVSKTALFGLTKVVAE 657
+ + + + D + + + + + E AY+ SK AL + A
Sbjct: 112 ISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAA 171
Query: 658 DLAPENIRVNCLAPGLIRT 676
+R+N +APG T
Sbjct: 172 AWGEAGVRLNTIAPGATET 190
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 206 bits (528), Expect = 2e-61
Identities = 76/277 (27%), Positives = 120/277 (43%), Gaps = 27/277 (9%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKE---------SNVNKAVET--- 424
+ GK A++T + G+G + A L+ GA + I R E + + ET
Sbjct: 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVAL 65
Query: 425 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 484
++K G ++ V + + AE GGIDI ++NA ++ + E W
Sbjct: 66 VEKTG-RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTI-ALLPEVESAQW 123
Query: 485 DKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK 544
D++ N+ TF V P + KRN G IV VSS+ G + +Y SK ++GLTK
Sbjct: 124 DEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTK 183
Query: 545 AVAQDLASENIRVNCLAPGITKT----------KFAAALYE---TEEAHEIAVSNVPMGR 591
A DL I VN +APG +T L + + A ++
Sbjct: 184 CAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAP 243
Query: 592 LAVPDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRL 628
P+E+ V FL + +S+ITG V+ G +R+
Sbjct: 244 FLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATARM 280
Score = 168 bits (429), Expect = 2e-47
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKE---------SNVNKAVET--- 55
+ GK A++T + G+G + A L+ GA + I R E + + ET
Sbjct: 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVAL 65
Query: 56 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 115
++K G ++ V + + AE GGIDI ++NA ++ + E W
Sbjct: 66 VEKTG-RRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTI-ALLPEVESAQW 123
Query: 116 DKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK 175
D++ N+ TF V P + KRN G IV VSS+ G + +Y SK ++GLTK
Sbjct: 124 DEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGVIGLTK 183
Query: 176 AVAQDLASENIRVNCLAPGITKT 198
A DL I VN +APG +T
Sbjct: 184 CAAHDLVGYGITVNAVAPGNIET 206
Score = 78.3 bits (194), Expect = 4e-16
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
GGIDI ++NA ++ L E WD++ NL +F V P M K+ G IV
Sbjct: 97 LGGIDIAITNAGISTIA-LLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVT 155
Query: 752 VSSIGGFK 759
VSS+ G
Sbjct: 156 VSSMLGHS 163
Score = 56.8 bits (138), Expect = 7e-09
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTK--FGDRMIAMLSTDKLYGGI- 695
+Y SK + GLTK A DL I VN +APG I T D + + D +
Sbjct: 169 ASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLK 228
Query: 696 DILVSNAAVNPANEPLVECSEV 717
D+ A+++ P ++ EV
Sbjct: 229 DVESVFASLHLQYAPFLKPEEV 250
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 205 bits (524), Expect = 3e-61
Identities = 33/258 (12%), Positives = 71/258 (27%), Gaps = 28/258 (10%)
Query: 371 STAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGH 430
S V K +V S +G + K ++ + + +E+
Sbjct: 12 SGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH--------- 62
Query: 431 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 490
+ +E+ + + E K +D V A + + ++
Sbjct: 63 ----SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDM 118
Query: 491 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
N+ S F + + GG V + L + AY +K A + K +A +
Sbjct: 119 NLYSAFASAHIGAKLLNQ--GGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASEN 176
Query: 551 A--SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
+ P T P+ +A + + +
Sbjct: 177 GGLPAGSTSLGILPVTLDTPTNRKYMSDANFD----DWTPLSEVA-----EKLFEWSTNS 227
Query: 609 DASYITGEVIV--AAGGM 624
D+ G ++ +
Sbjct: 228 DSRPTNGSLVKFETKSKV 245
Score = 178 bits (453), Expect = 3e-51
Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 17/199 (8%)
Query: 2 STAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGH 61
S V K +V S +G + K ++ + + +E+
Sbjct: 12 SGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH--------- 62
Query: 62 QKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEV 121
+ +E+ + + E K +D V A + + ++
Sbjct: 63 ----SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDM 118
Query: 122 NVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
N+ S F + + GG V + L + AY +K A + K +A +
Sbjct: 119 NLYSAFASAHIGAKLLNQ--GGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDLASEN 176
Query: 182 A--SENIRVNCLAPGITKT 198
+ P T
Sbjct: 177 GGLPAGSTSLGILPVTLDT 195
Score = 77.7 bits (192), Expect = 4e-16
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+I + +D V A + + D+NL S+F
Sbjct: 75 KSVIE--KINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAK 132
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+ +GG V +
Sbjct: 133 LLN--QGGLFVLTGASAALN 150
Score = 54.2 bits (131), Expect = 4e-08
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 639 GAYSVSKTALFGLTKVVAEDLA--PENIRVNCLAPGLIRT 676
AY +K A + K +A + P + P + T
Sbjct: 156 IAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDT 195
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 204 bits (522), Expect = 2e-60
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 42/288 (14%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI------------SSRKESNVNKAVET 424
R+ KV +VT + G G + A +L+ EGA +++ ++ +A
Sbjct: 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLE 65
Query: 425 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 484
++K G +K V + + +A +FG +D++V+NA + P +
Sbjct: 66 VEKTG-RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGI---CPLGAHLPVQAF 121
Query: 485 DKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-----------APFKLLGAYS 533
F+V+ LPY+ G SI+ S+ GL YS
Sbjct: 122 ADAFDVDFVGVINTVHAALPYLTS--GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYS 179
Query: 534 VSKTALLGLTKAVAQDLASENIRVNCLAPGITKT---------KFAAALYETEEAHEIAV 584
+K + T +A LA ++IR N + P T + E + +
Sbjct: 180 YAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALL 239
Query: 585 SNVPMGRLAV----PDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRL 628
+ M + ++ V FL SD++ Y+TG G +
Sbjct: 240 AFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAMLKF 287
Score = 165 bits (419), Expect = 5e-46
Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 29/214 (13%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVET 55
R+ KV +VT + G G + A +L+ EGA +++ ++ +A
Sbjct: 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLE 65
Query: 56 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVW 115
++K G +K V + + +A +FG +D++V+NA + P +
Sbjct: 66 VEKTG-RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGI---CPLGAHLPVQAF 121
Query: 116 DKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL-----------APFKLLGAYS 164
F+V+ LPY+ G SI+ S+ GL YS
Sbjct: 122 ADAFDVDFVGVINTVHAALPYLTS--GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYS 179
Query: 165 VSKTALLGLTKAVAQDLASENIRVNCLAPGITKT 198
+K + T +A LA ++IR N + P T
Sbjct: 180 YAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNT 213
Score = 73.0 bits (180), Expect = 2e-14
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +D++V+NA + P L + FDV+ LPY+ G SI+
Sbjct: 97 FGKLDVVVANAGICPLGAHL---PVQAFADAFDVDFVGVINTVHAALPYL--TSGASIIT 151
Query: 752 VSSIGGFK 759
S+ G
Sbjct: 152 TGSVAGLI 159
Score = 63.4 bits (155), Expect = 4e-11
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 618 IVAAGGMQSRLTKSTVEFRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTK 677
+ + YS +K + T +A LAP++IR N + P + T
Sbjct: 155 VAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTD 214
Query: 678 --FGDRMIAMLSTDKLYGGI-DILVSNAAVNPANEPLVECSEV 717
M D D L++ A+ P VE S++
Sbjct: 215 MLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDI 257
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 202 bits (517), Expect = 2e-60
Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 20/252 (7%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVVCHV 440
V VVT +S GIG AIA L G V+++ +R + + ++ G + V
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDV 60
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTFLL 498
+K+ D + + + A +G ID++V+NA + T ++ ++ WD++ ++N+ FL
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGI---TRDTLLIRMKKSQWDEVIDLNLTGVFLC 117
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLASE 553
TQ + K+ G I+ ++S+ GL G Y+ +K ++G +K A++ AS
Sbjct: 118 TQAATKIMMKKRKGRIINIASVVGLI-----GNIGQANYAAAKAGVIGFSKTAAREGASR 172
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLC-SDDASY 612
NI VN + PG + A L E+ + + +P+GR P+ + G+V FL S ASY
Sbjct: 173 NINVNVVCPGFIASDMTAKL--GEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASY 230
Query: 613 ITGEVIVAAGGM 624
ITG+ GG+
Sbjct: 231 ITGQAFTIDGGI 242
Score = 151 bits (385), Expect = 8e-42
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVVCHV 71
V VVT +S GIG AIA L G V+++ +R + + ++ G + V
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGG-QAITFGGDV 60
Query: 72 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTFLL 129
+K+ D + + + A +G ID++V+NA + T ++ ++ WD++ ++N+ FL
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGI---TRDTLLIRMKKSQWDEVIDLNLTGVFLC 117
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLASE 184
TQ + K+ G I+ ++S+ GL G Y+ +K ++G +K A++ AS
Sbjct: 118 TQAATKIMMKKRKGRIINIASVVGLI-----GNIGQANYAAAKAGVIGFSKTAAREGASR 172
Query: 185 NIRVNCLAPGITKT 198
NI VN + PG +
Sbjct: 173 NINVNVVCPGFIAS 186
Score = 66.0 bits (162), Expect = 4e-12
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G ID++V+NA + L+ + WD++ D+NL FL TQ M KK+ G I+
Sbjct: 77 WGTIDVVVNNAGITRDT-LLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIIN 135
Query: 752 VSSIGG 757
++S+ G
Sbjct: 136 IASVVG 141
Score = 50.9 bits (123), Expect = 4e-07
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ +K + G +K A + A NI VN + PG I + M T KL
Sbjct: 151 YAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIAS-------DM--TAKL 192
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 201 bits (514), Expect = 6e-60
Identities = 24/252 (9%), Positives = 70/252 (27%), Gaps = 25/252 (9%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
A+ + +V +G + V E+ ++ I
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN---------EEASASVIVK 52
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ ++ D+ +D ++ A + D +++ ++ ++
Sbjct: 53 MTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTS 112
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS--E 553
+ + ++++ GG + + L + Y ++K A+ L +++A +
Sbjct: 113 TISSHLATKHLKE--GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPS 170
Query: 554 NIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYI 613
+ P T + + + +
Sbjct: 171 GAAAIAVLPVTLDTPMNRKSMPEA----------DFSSWTPLEFLVETFHDWITGNKRPN 220
Query: 614 TGEVI--VAAGG 623
+G +I V G
Sbjct: 221 SGSLIQVVTTDG 232
Score = 167 bits (426), Expect = 1e-47
Identities = 21/194 (10%), Positives = 61/194 (31%), Gaps = 13/194 (6%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
A+ + +V +G + A V E+ ++ I
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN---------EEASASVIVK 52
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ ++ D+ +D ++ A + D +++ ++ ++
Sbjct: 53 MTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTS 112
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS--E 184
+ + ++++ GG + + L + Y ++K A+ L +++A +
Sbjct: 113 TISSHLATKHLKE--GGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPS 170
Query: 185 NIRVNCLAPGITKT 198
+ P T
Sbjct: 171 GAAAIAVLPVTLDT 184
Score = 77.4 bits (191), Expect = 5e-16
Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 654 VVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVE 713
VV + A ++ V T+ D++ A + +D ++ A +
Sbjct: 39 VVENEEASASVIV---KMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSK 95
Query: 714 CSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 759
D ++ ++ +S + + +++ +GG + +
Sbjct: 96 SLFKNCDLMWKQSIWTSTISSHLATKHLK--EGGLLTLAGAKAALD 139
Score = 53.5 bits (129), Expect = 6e-08
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 639 GAYSVSKTALFGLTKVVAEDLA--PENIRVNCLAPGLIRT 676
Y ++K A+ L + +A + P + P + T
Sbjct: 145 IGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDT 184
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 204 bits (520), Expect = 8e-60
Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 28/290 (9%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI------------S 411
ST +RL GKVA +T ++ G G A RL+ +GA +V +
Sbjct: 29 STRVSARGQGARMNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYA 88
Query: 412 SRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNP 471
+ + V ++++G ++I V Q + + A +FG IDILVSN ++
Sbjct: 89 QGSPEELKETVRLVEEQG-RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISN 147
Query: 472 ATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLG 530
G VV + W I + N+ + + VLP + +R GGS+++VSS GL
Sbjct: 148 Q-GEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQS 206
Query: 531 AYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKT----------KFAAALYE-TEEA 579
Y+ SK + GL ++A ++ NIRVN + PG T F L T E
Sbjct: 207 HYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTRED 266
Query: 580 HEIAVSNVPMGRLAV--PDEMGGIVAFLCSDDASYITGEVIVAAGGMQSR 627
S + + + P+++ VA+L SD+A YI G I GG +R
Sbjct: 267 AAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQLAR 316
Score = 170 bits (432), Expect = 2e-47
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 56
RL GKVA +T ++ G G A RL+ +GA +V + + + V +
Sbjct: 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV 102
Query: 57 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 116
+++G ++I V Q + + A +FG IDILVSN ++ G VV + W
Sbjct: 103 EEQG-RRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQ-GEVVSLTDQQWS 160
Query: 117 KIFEVNVKSTFLLTQEVLPYIRKR-NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTK 175
I + N+ + + VLP + +R GGS+++VSS GL Y+ SK + GL
Sbjct: 161 DILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGVQGLML 220
Query: 176 AVAQDLASENIRVNCLAPGITKT 198
++A ++ NIRVN + PG T
Sbjct: 221 SLANEVGRHNIRVNSVNPGAVNT 243
Score = 75.8 bits (187), Expect = 5e-15
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK-KGGSIV 750
+G IDILVSN ++ +V ++ W I NL ++ + VLP M ++ +GGS++
Sbjct: 133 FGHIDILVSNVGISNQG-EVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVI 191
Query: 751 YVSSIGGFK 759
+VSS G +
Sbjct: 192 FVSSTVGLR 200
Score = 56.9 bits (138), Expect = 8e-09
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y+ SK + GL +A ++ NIRVN + PG + T
Sbjct: 206 SHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNT 243
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 202 bits (515), Expect = 9e-60
Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 23/255 (9%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 437
L ++A+VT +S GIG AIA L+ GA V ++ + ++ V + G + V
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVK 84
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 495
V+++ + + LF +++G +D+LV+NA + T ++ + W + ++N+
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGI---TRDTLLLRMKRDDWQSVLDLNLGGV 141
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 550
FL ++ + K+ G I+ ++S+ G G YS +K ++GLTK VA++L
Sbjct: 142 FLCSRAAAKIMLKQRSGRIINIASVVGEM-----GNPGQANYSAAKAGVIGLTKTVAKEL 196
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD- 609
AS I VN +APG T + L E + +P+GR E+ G+V FL +D
Sbjct: 197 ASRGITVNAVAPGFIATDMTSELAA-----EKLLEVIPLGRYGEAAEVAGVVRFLAADPA 251
Query: 610 ASYITGEVIVAAGGM 624
A+YITG+VI GG+
Sbjct: 252 AAYITGQVINIDGGL 266
Score = 156 bits (396), Expect = 4e-43
Identities = 59/197 (29%), Positives = 104/197 (52%), Gaps = 17/197 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVIS-SRKESNVNKAVETLQKEGHQKISGVV 68
LT ++A+VT +S GIG AIA L+A GA V ++ + ++ V + G + V
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGG-EAFAVK 84
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
V+++ + + LF +++G +D+LV+NA + T ++ + W + ++N+
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGI---TRDTLLLRMKRDDWQSVLDLNLGGV 141
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 181
FL ++ + K+ G I+ ++S+ G G YS +K ++GLTK VA++L
Sbjct: 142 FLCSRAAAKIMLKQRSGRIINIASVVGEM-----GNPGQANYSAAKAGVIGLTKTVAKEL 196
Query: 182 ASENIRVNCLAPGITKT 198
AS I VN +APG T
Sbjct: 197 ASRGITVNAVAPGFIAT 213
Score = 66.0 bits (162), Expect = 4e-12
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
+ +G +D+LV+NA + L+ W + D+NL FL ++ M K++ G I
Sbjct: 102 ERWGRLDVLVNNAGITRDT-LLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRI 160
Query: 750 VYVSSIGG 757
+ ++S+ G
Sbjct: 161 INIASVVG 168
Score = 54.5 bits (132), Expect = 4e-08
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGI 695
YS +K + GLTK VA++LA I VN +APG I T M + L+ +KL I
Sbjct: 178 YSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATD----MTSELAAEKLLEVI 228
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 201 bits (514), Expect = 1e-59
Identities = 44/245 (17%), Positives = 91/245 (37%), Gaps = 7/245 (2%)
Query: 376 ASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
+ V + D IG IAK+ + EG +V R + V ++ G + I
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGR-IVA 60
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+++ A+ +++ + N N P++E + V+ K++E+ +
Sbjct: 61 RSLDARNEDEVTAFLNAADA-HAPLEVTIFNVGANV-NFPILETTDRVFRKVWEMACWAG 118
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
F+ +E + G I + + L A++ +K L + +++A++L +NI
Sbjct: 119 FVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNI 178
Query: 556 RV-NCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
V + + T + E + L P + G L S T
Sbjct: 179 HVAHLIIDSGVDTAWVRERREQMFGKDAL---ANPDLLMPPAAVAGAYWQLYQQPKSAWT 235
Query: 615 GEVIV 619
E+ +
Sbjct: 236 FEMEI 240
Score = 180 bits (459), Expect = 5e-52
Identities = 38/211 (18%), Positives = 84/211 (39%), Gaps = 4/211 (1%)
Query: 7 ASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
+ V + D IG IAK+ +AEG +V R + V ++ G + I
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGR-IVA 60
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+++ A+ +++ + N N P++E + V+ K++E+ +
Sbjct: 61 RSLDARNEDEVTAFLNAADA-HAPLEVTIFNVGANV-NFPILETTDRVFRKVWEMACWAG 118
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
F+ +E + G I + + L A++ +K L + +++A++L +NI
Sbjct: 119 FVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNI 178
Query: 187 RV-NCLAPGITKTKFAAAKKEVKKKETNDEP 216
V + + T + ++E +
Sbjct: 179 HVAHLIIDSGVDTAWVRERREQMFGKDALAN 209
Score = 79.2 bits (196), Expect = 1e-16
Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D + A L+ + +++ + N N P++E ++ V+ K++++ + F+ +E
Sbjct: 69 DEVTAFLNAADAHAPLEVTIFNVGANVNF-PILETTDRVFRKVWEMACWAGFVSGRESAR 127
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
M G I + + +
Sbjct: 128 LMLAHGQGKIFFTGATASLR 147
Score = 45.0 bits (107), Expect = 3e-05
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRV-NCLAPGLIRTKFGDRM 682
A++ +K L + + +A +L P+NI V + + + T +
Sbjct: 153 AAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER 197
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 201 bits (513), Expect = 1e-59
Identities = 54/245 (22%), Positives = 105/245 (42%), Gaps = 20/245 (8%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGA-------SVVISSRKESNVNKAVETLQKEGHQKIS 434
+ ++T + GIG AIA + +V+SSR +++ K + EG
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTD 61
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
+ ++ D ++L H +++G ID LV+NA V G + + E +D N+K
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLTEEDFDYTMNTNLKG 120
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
TF LTQ + + +++ G I +++S+ F+ Y +SK GL + + N
Sbjct: 121 TFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCN 180
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYIT 614
+R+ + PG T + +E + + P+++ V + +
Sbjct: 181 VRITDVQPGAVYTPMWGKV--DDEMQALMMM---------PEDIAAPVVQAYLQPSRTVV 229
Query: 615 GEVIV 619
E+I+
Sbjct: 230 EEIIL 234
Score = 178 bits (455), Expect = 1e-51
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 9/206 (4%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGA-------SVVISSRKESNVNKAVETLQKEGHQKIS 65
+ ++T + GIG AIA + +V+SSR +++ K + EG
Sbjct: 3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTD 61
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 125
+ ++ D ++L H +++G ID LV+NA V G + + E +D N+K
Sbjct: 62 TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLTEEDFDYTMNTNLKG 120
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
TF LTQ + + +++ G I +++S+ F+ Y +SK GL + + N
Sbjct: 121 TFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQRGLVETMRLYARKCN 180
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKE 211
+R+ + PG T + +
Sbjct: 181 VRITDVQPGAVYTPMWGKVDDEMQAL 206
Score = 78.4 bits (194), Expect = 2e-16
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
YG ID LV+NA V L + +E +D + NLK +F LTQ + M ++ G I +
Sbjct: 84 YGHIDCLVNNAGVGRFG-ALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFF 142
Query: 752 VSSIGGFK 759
++S+ K
Sbjct: 143 ITSVAATK 150
Score = 53.0 bits (128), Expect = 8e-08
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
Y +SK GL + + N+R+ + PG + T ++
Sbjct: 156 SIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV 199
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 201 bits (513), Expect = 1e-59
Identities = 83/253 (32%), Positives = 135/253 (53%), Gaps = 25/253 (9%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
L GK +++T +S GIG AIA+ L G+ V+IS E + L+ VC
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYT----IEVC 67
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 496
++A KE+ L K +DILV NA + T + + +DK+ ++N+K+ F
Sbjct: 68 NLANKEECSNLIS----KTSNLDILVCNAGI---TSDTLAIRMKDQDFDKVIDINLKANF 120
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 551
+L +E + + ++ G I+ +SSI G+A G Y SK L+G+TK+++ ++A
Sbjct: 121 ILNREAIKKMIQKRYGRIINISSIVGIA-----GNPGQANYCASKAGLIGMTKSLSYEVA 175
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDAS 611
+ I VN +APG K+ L E+ E V +P+G +P+++ VAFL S++AS
Sbjct: 176 TRGITVNAVAPGFIKSDMTDKL--NEKQREAIVQKIPLGTYGIPEDVAYAVAFLASNNAS 233
Query: 612 YITGEVIVAAGGM 624
YITG+ + GGM
Sbjct: 234 YITGQTLHVNGGM 246
Score = 148 bits (375), Expect = 2e-40
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 23/196 (11%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
LTGK +++T +S GIG AIA+ L G+ V+IS E + L+ VC
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYT----IEVC 67
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKSTF 127
++A KE+ L K +DILV NA + T + + +DK+ ++N+K+ F
Sbjct: 68 NLANKEECSNLIS----KTSNLDILVCNAGI---TSDTLAIRMKDQDFDKVIDINLKANF 120
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDLA 182
+L +E + + ++ G I+ +SSI G+A G Y SK L+G+TK+++ ++A
Sbjct: 121 ILNREAIKKMIQKRYGRIINISSIVGIA-----GNPGQANYCASKAGLIGMTKSLSYEVA 175
Query: 183 SENIRVNCLAPGITKT 198
+ I VN +APG K+
Sbjct: 176 TRGITVNAVAPGFIKS 191
Score = 63.7 bits (156), Expect = 3e-11
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+DILV NA + + + +DK+ D+NLK++F+L +E + M +K+ G I+
Sbjct: 82 TSNLDILVCNAGITSDT-LAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIIN 140
Query: 752 VSSIGGF 758
+SSI G
Sbjct: 141 ISSIVGI 147
Score = 51.4 bits (124), Expect = 3e-07
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y SK L G+TK ++ ++A I VN +APG I++ M TDKL
Sbjct: 156 YCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKS-------DM--TDKL 197
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 201 bits (514), Expect = 2e-59
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 33/276 (11%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI------------SSRKESNVNKAVETL 425
L GKVA +T ++ G G A A RL+ +GA ++ + V+ +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 426 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 485
+ G +I V +E + + G +DI+V+NA + P + ++ W
Sbjct: 70 EDIG-SRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP-----MSAGDDGWH 123
Query: 486 KIFEVNVKSTFLLTQEVLPYIRK-RNGGSIVYVSSIGGLAPFKL----LGAYSVSKTALL 540
+ +VN+ + + +P + K GGSIV +SS GLA Y +K ++
Sbjct: 124 DVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVV 183
Query: 541 GLTKAVAQDLASENIRVNCLAPGITKT---------KFAAALYETEEAHEIAVSNVPMGR 591
GL + A LA + IRVN + P +T ++ A + + + +P+
Sbjct: 184 GLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMGNAMPVEV 243
Query: 592 LAVPDEMGGIVAFLCSDDASYITGEVIVAAGGMQSR 627
LA P+++ VA+L SD A YITG + G ++
Sbjct: 244 LA-PEDVANAVAWLVSDQARYITGVTLPVDAGFLNK 278
Score = 163 bits (415), Expect = 2e-45
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI------------SSRKESNVNKAVETL 56
LTGKVA +T ++ G G A A RL+A+GA ++ + V+ +
Sbjct: 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV 69
Query: 57 QKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWD 116
+ G +I V +E + + G +DI+V+NA + P + ++ W
Sbjct: 70 EDIG-SRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP-----MSAGDDGWH 123
Query: 117 KIFEVNVKSTFLLTQEVLPYIRK-RNGGSIVYVSSIGGLAPFKL----LGAYSVSKTALL 171
+ +VN+ + + +P + K GGSIV +SS GLA Y +K ++
Sbjct: 124 DVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVV 183
Query: 172 GLTKAVAQDLASENIRVNCLAPGITKT 198
GL + A LA + IRVN + P +T
Sbjct: 184 GLMRVYANLLAGQMIRVNSIHPSGVET 210
Score = 69.1 bits (170), Expect = 4e-13
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK-KKGGSIV 750
G +DI+V+NA + P + + W + DVNL + + +P + K GGSIV
Sbjct: 100 LGRLDIVVANAGIAP-----MSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIV 154
Query: 751 YVSSIGGFK 759
+SS G
Sbjct: 155 LISSSAGLA 163
Score = 57.6 bits (140), Expect = 3e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
Y +K + GL +V A LA + IRVN + P + T
Sbjct: 173 VGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVET 210
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 213 bits (546), Expect = 6e-59
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 9/127 (7%)
Query: 235 LPSSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHA 294
LP +Y P+ VE W W K F K+ K FV+ +PPPNVTG+LH+GHA
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVANP--------KSGKPPFVIFMPPPNVTGSLHMGHA 54
Query: 295 LTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 354
L N+++D++ R+ RM+G +W PG DHAGIATQVVVE+ L +E KTRH++GREKF+E+
Sbjct: 55 LDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL-LKEGKTRHDLGREKFLER 113
Query: 355 VWEWKKE 361
VW+WK+E
Sbjct: 114 VWQWKEE 120
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 200 bits (509), Expect = 6e-58
Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 24/265 (9%)
Query: 364 STSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESN------ 417
M N RLAG +T +S GIG AIA + + +GA++VI+++
Sbjct: 30 MGRGSAMLP--NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLG 87
Query: 418 -VNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPV 476
+ A E ++ G + + + V ++ E A KKFGGIDILV+NA+
Sbjct: 88 TIYTAAEEIEAVGGKAL-PCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAIS-LTNT 145
Query: 477 VECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAP--FKLLGAYSV 534
++ P D + VN + T+L ++ +PY++K I+ +S L P FK AY++
Sbjct: 146 LDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTI 205
Query: 535 SKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAV 594
+K + +A++ I VN L P A + +
Sbjct: 206 AKYGMSMYVLGMAEEFKG-EIAVNALWPKTAIHTAAMDMLGGPGI---------ESQCRK 255
Query: 595 PDEMGGIVAFLCSDDASYITGEVIV 619
D + + TG ++
Sbjct: 256 VDIIADAAYSIFQ-KPKSFTGNFVI 279
Score = 181 bits (462), Expect = 2e-51
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 12/207 (5%)
Query: 6 NASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESN-------VNKAVETLQK 58
N RL G +T +S GIG AIA + + +GA++VI+++ + A E ++
Sbjct: 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA 98
Query: 59 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
G + + + V ++ E A KKFGGIDILV+NA+ ++ P D +
Sbjct: 99 VGGKAL-PCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAIS-LTNTLDTPTKRLDLM 156
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAP--FKLLGAYSVSKTALLGLTKA 176
VN + T+L ++ +PY++K I+ +S L P FK AY+++K +
Sbjct: 157 MNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMYVLG 216
Query: 177 VAQDLASENIRVNCLAPGITKTKFAAA 203
+A++ I VN L P A
Sbjct: 217 MAEEFKG-EIAVNALWPKTAIHTAAMD 242
Score = 75.6 bits (186), Expect = 9e-15
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ K +GGIDILV+NA+ ++ D + +VN + ++L ++ +P
Sbjct: 117 SAAVE--KAIKKFGGIDILVNNASAISLT-NTLDTPTKRLDLMMNVNTRGTYLASKACIP 173
Query: 740 YMRKKKGGSIVYVSSIGG 757
Y++K K I+ +S
Sbjct: 174 YLKKSKVAHILNISPPLN 191
Score = 49.8 bits (119), Expect = 2e-06
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGG 694
F+ AY+++K + +AE+ I VN L P M+ +
Sbjct: 197 FKQHCAYTIAKYGMSMYVLGMAEEFKG-EIAVNALWPKTAIHTAAMDMLGGPGIESQCRK 255
Query: 695 IDILVSNAAVNPANEP 710
+DI +++AA + +P
Sbjct: 256 VDI-IADAAYSIFQKP 270
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 193 bits (494), Expect = 5e-57
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 15/254 (5%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG--HQKISG 435
+A++T +S GIG IA L+T+G VV+ +R + N+ K + + + Q+
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 436 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
+ + + +K+G +DILV+ AA+ + P + + KI E+NV +
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMD--GSLSEPVDNFRKIMEINVIAQ 121
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
+ + + V ++ + G I V+S F G Y +K ALLGL +++ ++LA I
Sbjct: 122 YGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGI 181
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA-SYIT 614
RV L PG T A + PD++ + L + I
Sbjct: 182 RVTTLCPGWVNTDMAKKAGTP----------FKDEEMIQPDDLLNTIRCLLNLSENVCIK 231
Query: 615 GEVIVAAGGMQSRL 628
V +
Sbjct: 232 DIVFEMKKSIIEGH 245
Score = 188 bits (481), Expect = 3e-55
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG--HQKISG 66
+A++T +S GIG IA L+ +G VV+ +R + N+ K + + + Q+
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ + + +K+G +DILV+ AA+ + P + + KI E+NV +
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMD--GSLSEPVDNFRKIMEINVIAQ 121
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
+ + + V ++ + G I V+S F G Y +K ALLGL +++ ++LA I
Sbjct: 122 YGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALLGLAESLYRELAPLGI 181
Query: 187 RVNCLAPGITKTKFAAAKKEVKKKET 212
RV L PG T A K E
Sbjct: 182 RVTTLCPGWVNTDMAKKAGTPFKDEE 207
Score = 74.5 bits (184), Expect = 5e-15
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
YG +DILV+ AA+ + + + KI ++N+ + + + + V M+ +K G I
Sbjct: 85 YGAVDILVNAAAMFM--DGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFN 142
Query: 752 VSSIGGFK 759
V+S
Sbjct: 143 VASRAAKY 150
Score = 54.5 bits (132), Expect = 3e-08
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDR 681
G Y +K AL GL + + +LAP IRV L PG + T +
Sbjct: 156 GIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKK 198
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 191 bits (487), Expect = 2e-55
Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 7/245 (2%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
S G+ AVVT + GIG A A + GA +V+S + + +AV L+ +G GV
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFD-AHGV 85
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
VC V ++ +L + A + GG+D++ SNA + A GP+ + + W + ++++ +
Sbjct: 86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVA-GPLAQMNHDDWRWVIDIDLWGSI 144
Query: 497 LLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 555
+ LP + ++ GG I + +S GL P LG Y V+K ++GL + +A+++ I
Sbjct: 145 HAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGI 204
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITG 615
V+ L P + +T L E A + + + +DD + +T
Sbjct: 205 GVSVLCPMVVET----KLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTA 260
Query: 616 EVIVA 620
+ I+A
Sbjct: 261 DAILA 265
Score = 186 bits (475), Expect = 1e-53
Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 3/228 (1%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
S G+ AVVT + GIG A A + GA +V+S + + +AV L+ +G GV
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFD-AHGV 85
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
VC V ++ +L + A + GG+D++ SNA + A GP+ + + W + ++++ +
Sbjct: 86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVA-GPLAQMNHDDWRWVIDIDLWGSI 144
Query: 128 LLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENI 186
+ LP + ++ GG I + +S GL P LG Y V+K ++GL + +A+++ I
Sbjct: 145 HAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGI 204
Query: 187 RVNCLAPGITKTKFAAAKKEVKKKETNDEPIVYTSNTAPGEMKDVLGP 234
V+ L P + +TK + + ++ + + + +
Sbjct: 205 GVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSA 252
Score = 66.6 bits (163), Expect = 5e-12
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK-KKGGSIV 750
GG+D++ SNA + A PL + + W + D++L S + LP + + GG I
Sbjct: 106 LGGVDVVFSNAGIVVAG-PLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIA 164
Query: 751 YVSSIGGF 758
+ +S G
Sbjct: 165 FTASFAGL 172
Score = 58.1 bits (141), Expect = 3e-09
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDIL 698
G Y V+K + GL + +A ++ P I V+ L P ++ TK + D YG
Sbjct: 179 GTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGAD--YGMSATP 236
Query: 699 VSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFL-LTQ-EVLPYMRKK 744
P + V ++ V D L + L +R++
Sbjct: 237 EGAFGPLPTQDESVS-ADDVARLTADAILANRLYILPHAAARESIRRR 283
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 195 bits (499), Expect = 3e-55
Identities = 71/273 (26%), Positives = 123/273 (45%), Gaps = 23/273 (8%)
Query: 361 EVFSTSTKIMSTAVNASR-LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVN 419
+VF + + + L GKVAVVT ++ GIG IA+ + +GA+VV +
Sbjct: 192 QVFRVGAADSTPPADWDKPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AE 250
Query: 420 KAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPAT--GPV 476
K G + V + K+ H + GG +DILV+NA + T +
Sbjct: 251 DLKRVADKVGGT---ALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI---TRDKLL 304
Query: 477 VECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----A 531
E WD + VN+ + LT+ ++ GG ++ +SS+ G+A G
Sbjct: 305 ANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA-----GNRGQTN 359
Query: 532 YSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGR 591
Y+ +K ++GL +A+A LA + I +N +APG +TK A+ E+ + +
Sbjct: 360 YATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI--PLATREVGRRLNSLFQ 417
Query: 592 LAVPDEMGGIVAFLCSDDASYITGEVIVAAGGM 624
P ++ ++A+ S ++ +TG I G
Sbjct: 418 GGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450
Score = 148 bits (377), Expect = 1e-38
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
L GKVAVVT ++ GIG IA+ + +GA+VV + K G +
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-AEDLKRVADKVGGT---ALTL 266
Query: 70 HVAKKEDRQKLFEHAEKKFGG-IDILVSNAAVNPAT--GPVVECPENVWDKIFEVNVKST 126
V + K+ H + GG +DILV+NA + T + E WD + VN+ +
Sbjct: 267 DVTADDAVDKITAHVTEHHGGKVDILVNNAGI---TRDKLLANMDEKRWDAVIAVNLLAP 323
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG-----AYSVSKTALLGLTKAVAQDL 181
LT+ ++ GG ++ +SS+ G+A G Y+ +K ++GL +A+A L
Sbjct: 324 QRLTEGLVGNGTIGEGGRVIGLSSMAGIA-----GNRGQTNYATTKAGMIGLAEALAPVL 378
Query: 182 ASENIRVNCLAPG 194
A + I +N +APG
Sbjct: 379 ADKGITINAVAPG 391
Score = 67.3 bits (165), Expect = 7e-12
Identities = 60/274 (21%), Positives = 97/274 (35%), Gaps = 51/274 (18%)
Query: 504 PYIRK-RNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAP 562
P +R +V V + A V + AL G T+++ ++L
Sbjct: 108 PLLRNLAPCARVVVVGTTPAEAG---SVHAQVVQRALEGFTRSLGKELRR---------- 154
Query: 563 GITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI---- 618
G T + +Y + + + F+ S ++Y+ G+V
Sbjct: 155 GAT----VSLVY------------LSADAKPGATGLESTMRFILSAKSAYVDGQVFRVGA 198
Query: 619 ---VAAGGMQSRLTKSTV----EFRFIGAYSVSKTALFGLTKVV------AEDLAPENIR 665
L R IGA A G T V AEDL +
Sbjct: 199 ADSTPPADWDKPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADK 258
Query: 666 VNCLAPGLIRTKF--GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIF 723
V A L T D++ A + T+ G +DILV+NA + L E WD +
Sbjct: 259 VGGTALTLDVTADDAVDKITAHV-TEHHGGKVDILVNNAGITRDKL-LANMDEKRWDAVI 316
Query: 724 DVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 757
VNL + LT+ ++ +GG ++ +SS+ G
Sbjct: 317 AVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAG 350
Score = 49.6 bits (119), Expect = 3e-06
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKL 691
Y+ +K + GL + +A LA + I +N +APG I T M T+ +
Sbjct: 360 YATTKAGMIGLAEALAPVLADKGITINAVAPGFIET-------KM--TEAI 401
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 182 bits (465), Expect = 2e-52
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 1 MSTAVNASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKE 59
++ L GK +VT AS GIG +A L+ GA VV+++R + + K V +
Sbjct: 17 LNEEFRPEMLQGKKVIVTGASK-GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL 75
Query: 60 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 119
G + + ++ A K GG+D+L+ N N + + + K
Sbjct: 76 GAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSM 134
Query: 120 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQ 179
EVN S +LT LP + K++ GSIV VSS+ G + ++ AYS SK AL G ++ +
Sbjct: 135 EVNFLSYVVLTVAALPML-KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRK 193
Query: 180 DLASE--NIRVNCLAPGITKTKFA 201
+ + N+ + G+ T+ A
Sbjct: 194 EYSVSRVNVSITLCVLGLIDTETA 217
Score = 181 bits (462), Expect = 5e-52
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 370 MSTAVNASRLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKE 428
++ L GK +VT AS GIG +A L+ GA VV+++R + + K V +
Sbjct: 17 LNEEFRPEMLQGKKVIVTGASK-GIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL 75
Query: 429 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 488
G + + ++ A K GG+D+L+ N N + + + K
Sbjct: 76 GAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSM 134
Query: 489 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQ 548
EVN S +LT LP + K++ GSIV VSS+ G + ++ AYS SK AL G ++ +
Sbjct: 135 EVNFLSYVVLTVAALPML-KQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRK 193
Query: 549 DLASE--NIRVNCLAPGITKTKFA 570
+ + N+ + G+ T+ A
Sbjct: 194 EYSVSRVNVSITLCVLGLIDTETA 217
Score = 70.7 bits (174), Expect = 2e-13
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 688 TDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGG 747
KL GG+D+L+ N N + L K +VN S +LT LP + K+ G
Sbjct: 100 AGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPML-KQSNG 157
Query: 748 SIVYVSSIGG 757
SIV VSS+ G
Sbjct: 158 SIVVVSSLAG 167
Score = 41.9 bits (99), Expect = 4e-04
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPE--NIRVNCLAPGLIRTKFGDRMI 683
+ AYS SK AL G + ++ + N+ + GLI T+ + +
Sbjct: 173 MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAV 221
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 182 bits (464), Expect = 2e-52
Identities = 68/263 (25%), Positives = 109/263 (41%), Gaps = 21/263 (7%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ G A+V+ + G+G A +RL +G VVI+ + L V
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE----FVS 82
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPV----VECPENVWDKIFEVNVK 493
+V ++ E A + +V++ A V + K ++ +
Sbjct: 83 TNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLN 142
Query: 494 STFLLTQEVLPYIRKR------NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
T+ + + V I G++V +SI G AY+ +K ++GLT A A
Sbjct: 143 GTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAA 202
Query: 548 QDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM-GRLAVPDEMGGIVAFLC 606
+DL+S IRVN +APG KT ++ EEA +N+P RL PDE AFL
Sbjct: 203 RDLSSAGIRVNTIAPGTMKTPIMESV--GEEALAKFAANIPFPKRLGTPDEFADAAAFLL 260
Query: 607 SDDASYITGEVIVAAGG--MQSR 627
++ YI GEV+ G +
Sbjct: 261 TN--GYINGEVMRLDGAQRFTPK 281
Score = 148 bits (375), Expect = 5e-40
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 15/213 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ G A+V+ + G+G A +RL A+G VVI+ + L V
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE----FVS 82
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPV----VECPENVWDKIFEVNVK 124
+V ++ E A + +V++ A V + K ++ +
Sbjct: 83 TNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLN 142
Query: 125 STFLLTQEVLPYIRKR------NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
T+ + + V I G++V +SI G AY+ +K ++GLT A A
Sbjct: 143 GTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAGVIGLTIAAA 202
Query: 179 QDLASENIRVNCLAPGITKTK-FAAAKKEVKKK 210
+DL+S IRVN +APG KT + +E K
Sbjct: 203 RDLSSAGIRVNTIAPGTMKTPIMESVGEEALAK 235
Score = 58.1 bits (141), Expect = 3e-09
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ +K + GLT A DL+ IRVN +APG ++T
Sbjct: 186 AYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKT 222
Score = 50.7 bits (122), Expect = 6e-07
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPL----VECSEVVWDKIFDVNLKSSFLLTQEVLP 739
A+ + ++L +V++ A + + K D+ L ++ + + V
Sbjct: 94 AIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAA 153
Query: 740 YMRKKK------GGSIVYVSSIGGF 758
+ + G++V +SI G+
Sbjct: 154 SIAAAEPRENGERGALVLTASIAGY 178
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 180 bits (459), Expect = 3e-52
Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 28/250 (11%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
++ +V +G AI + G +V+ + + V
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN-----------DQADSNILVDG 49
Query: 439 HVAKKEDRQKLFEHAEK--KFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+ E Q + E + +D + A + D + + +V S+
Sbjct: 50 NKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA 109
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS--EN 554
+ + +++ GG + + + P + Y ++K A+ LT ++A + +N
Sbjct: 110 IAAKLATTHLKP--GGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN 167
Query: 555 IRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASY-I 613
V + P T + N + + ++ +S
Sbjct: 168 SAVLTIMPVTLDTPMNRK----------WMPNADHSSWTPLSFISEHLLKWTTETSSRPS 217
Query: 614 TGEVIVAAGG 623
+G ++
Sbjct: 218 SGALLKITTE 227
Score = 159 bits (404), Expect = 1e-44
Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 17/193 (8%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
++ +V +G AI + G +V+ + + V
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN-----------DQADSNILVDG 49
Query: 70 HVAKKEDRQKLFEHAEK--KFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ E Q + E + +D + A + D + + +V S+
Sbjct: 50 NKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSA 109
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLAS--EN 185
+ + +++ GG + + + P + Y ++K A+ LT ++A + +N
Sbjct: 110 IAAKLATTHLKP--GGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDN 167
Query: 186 IRVNCLAPGITKT 198
V + P T
Sbjct: 168 SAVLTIMPVTLDT 180
Score = 77.3 bits (191), Expect = 5e-16
Identities = 12/109 (11%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 653 KVVAEDLAPENIRVNCLA-PGLIR-TKFGDRMIAMLSTDKLYGGIDILVSNAAVNPANEP 710
V+ DL+ + + + G T+ ++ ++ +D + A
Sbjct: 29 TVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSA 88
Query: 711 LVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGGFK 759
+ D + ++ SS + + +++ GG + +
Sbjct: 89 SSKDFVKNADLMIKQSVWSSAIAAKLATTHLK--PGGLLQLTGAAAAMG 135
Score = 52.3 bits (126), Expect = 1e-07
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 639 GAYSVSKTALFGLTKVVAEDLA--PENIRVNCLAPGLIRT 676
Y ++K A+ LT +A + P+N V + P + T
Sbjct: 141 IGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 180
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 178 bits (454), Expect = 1e-50
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ-KISGV 67
G+ A VT ++G+G + ++L +G V I+ ++ +++KA+ TL+ EG ++ GV
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
VA +E + + E +FG + IL +NA VN P+ E + WD + VN+
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNAGVNLF-QPIEESSYDDWDWLLGVNLHGVV 123
Query: 128 LLTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 181
+P + +R GG +V +S+ G Y+ +K A+ GL++++ L
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL 183
Query: 182 ASENIRVNCLAPGITKTKFAAAKKEVKKKETNDEP 216
I V+ L PG+ K+ A+ +
Sbjct: 184 LKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVK 218
Score = 177 bits (451), Expect = 3e-50
Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ-KISGV 436
AG+ A VT ++G+G + ++L +G V I+ ++ +++KA+ TL+ EG ++ GV
Sbjct: 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGV 64
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
VA +E + + E +FG + IL +NA VN P+ E + WD + VN+
Sbjct: 65 QLDVASREGFKMAADEVEARFGPVSILCNNAGVNLF-QPIEESSYDDWDWLLGVNLHGVV 123
Query: 497 LLTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDL 550
+P + +R GG +V +S+ G Y+ +K A+ GL++++ L
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVRGLSESLHYSL 183
Query: 551 ASENIRVNCLAPGITKTKFAAA 572
I V+ L PG+ K+ A+
Sbjct: 184 LKYEIGVSVLCPGLVKSYIYAS 205
Score = 61.7 bits (150), Expect = 2e-10
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKK------K 745
+G + IL +NA VN P+ E S WD + VNL +P M ++ K
Sbjct: 85 FGPVSILCNNAGVNLFQ-PIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQK 143
Query: 746 GGSIVYVSSIGGF 758
GG +V +S+ F
Sbjct: 144 GGHVVNTASMAAF 156
Score = 53.6 bits (129), Expect = 9e-08
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
G Y+ +K A+ GL++ + L I V+ L PGL+++
Sbjct: 163 GIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKS 200
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 173 bits (441), Expect = 1e-49
Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 19/243 (7%)
Query: 378 RLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L K+AVVT A+ G+G I K LS + + E + L + + +
Sbjct: 2 SLKKKIAVVTGATG-GMGIEIVKDLSRDHIVYALGRNPE-----HLAALAEIE--GVEPI 53
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+ K+ + + + +D LV AAV + W ++NV
Sbjct: 54 ESDIVKEVLEEGGVDKLKN-LDHVDTLVHAAAVAR-DTTIEAGSVAEWHAHLDLNVIVPA 111
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 556
L++++LP +R G ++Y++S G P Y+ SK AL GL A ++ A+ IR
Sbjct: 112 ELSRQLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIR 170
Query: 557 VNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD-DASYITG 615
V+ ++PG T T L + + + P E+ + F+ + + IT
Sbjct: 171 VSTVSPGPTNTPMLQGL--MDSQGTNFRPEIYI----EPKEIANAIRFVIDAGETTQITN 224
Query: 616 EVI 618
+
Sbjct: 225 VDV 227
Score = 169 bits (430), Expect = 4e-48
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 12/208 (5%)
Query: 9 RLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L K+AVVT A+ G+G I K LS + + E + L + + +
Sbjct: 2 SLKKKIAVVTGATG-GMGIEIVKDLSRDHIVYALGRNPE-----HLAALAEIE--GVEPI 53
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ K+ + + + +D LV AAV + W ++NV
Sbjct: 54 ESDIVKEVLEEGGVDKLKN-LDHVDTLVHAAAVAR-DTTIEAGSVAEWHAHLDLNVIVPA 111
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L++++LP +R G ++Y++S G P Y+ SK AL GL A ++ A+ IR
Sbjct: 112 ELSRQLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIR 170
Query: 188 VNCLAPGITKTKFAAAKKEVKKKETNDE 215
V+ ++PG T T + + E
Sbjct: 171 VSTVSPGPTNTPMLQGLMDSQGTNFRPE 198
Score = 71.4 bits (176), Expect = 6e-14
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ K +D LV AAV + S W D+N+ L++++LP
Sbjct: 61 VLEEGGVDKLKNLDHVDTLVHAAAVARDT-TIEAGSVAEWHAHLDLNVIVPAELSRQLLP 119
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+R G ++Y++S G
Sbjct: 120 ALR-AASGCVIYINSGAGNG 138
Score = 48.7 bits (117), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGD 680
Y+ SK AL GL ++ A IRV+ ++PG T
Sbjct: 144 TIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQ 185
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 170 bits (432), Expect = 2e-48
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 11/207 (5%)
Query: 381 GKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCH 439
++T AS GIG A A+ L +G V + +R E ++ L E + +
Sbjct: 5 KGAVLITGASR-GIGEATARLLHAKGYRVGLMARDEK----RLQALAAEL-EGALPLPGD 58
Query: 440 VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLT 499
V ++ D + E+ FG + LV+NA V PV E W + + N+ FL
Sbjct: 59 VREEGDWARAVAAMEEAFGELSALVNNAGVGV-MKPVHELTLEEWRLVLDTNLTGAFLGI 117
Query: 500 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 559
+ +P + +R GG+IV V S+ G PFK AY+ SK LLGL A DL N+RV
Sbjct: 118 RHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVN 177
Query: 560 LAPGITKTKFAAALYETEE---AHEIA 583
+ PG T FA ++A
Sbjct: 178 VLPGSVDTGFAGNTPGQAWKLKPEDVA 204
Score = 166 bits (423), Expect = 3e-47
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 9 RLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
++T AS GIG A A+ L A+G V + +R E ++ L E + +
Sbjct: 2 EGMKGAVLITGASR-GIGEATARLLHAKGYRVGLMARDEK----RLQALAAEL-EGALPL 55
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V ++ D + E+ FG + LV+NA V PV E W + + N+ F
Sbjct: 56 PGDVREEGDWARAVAAMEEAFGELSALVNNAGVGV-MKPVHELTLEEWRLVLDTNLTGAF 114
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
L + +P + +R GG+IV V S+ G PFK AY+ SK LLGL A DL N+R
Sbjct: 115 LGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVR 174
Query: 188 VNCLAPGITKTKFAAA 203
V + PG T FA
Sbjct: 175 VVNVLPGSVDTGFAGN 190
Score = 70.2 bits (173), Expect = 1e-13
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G + LV+NA V +P+ E + W + D NL +FL + +P + ++ GG+IV
Sbjct: 76 FGELSALVNNAGVGV-MKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVN 134
Query: 752 VSSIGGFKQF 761
V S+ G F
Sbjct: 135 VGSLAGKNPF 144
Score = 48.3 bits (116), Expect = 3e-06
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
AY+ SK L GL DL N+RV + PG + T F
Sbjct: 148 AAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT 191
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 170 bits (434), Expect = 3e-48
Identities = 56/238 (23%), Positives = 97/238 (40%), Gaps = 14/238 (5%)
Query: 379 LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
+ G++ ++T + GIG A + + +V+ + + + + G K+ V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVV 87
Query: 439 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 498
+ +ED + + + G + ILV+NA V + + +K FEVNV + F
Sbjct: 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWT 146
Query: 499 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE---NI 555
T+ LP + K N G IV V+S G L AY SK A +G K + +LA+ +
Sbjct: 147 TKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGV 206
Query: 556 RVNCLAPGITKTKFAA-------ALYETEEAHEIAVSNV--PMGRLAVPDEMGGIVAF 604
+ CL P T F E EE + + + +P + +
Sbjct: 207 KTTCLCPNFVNTGFIKNPSTSLGPTLEPEEVVNRLMHGILTEQKMIFIPSSIAFLTTL 264
Score = 168 bits (428), Expect = 2e-47
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 5/196 (2%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
+TG++ ++T + GIG A + + +V+ + + + + G K+ V
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGA-KVHTFVV 87
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
+ +ED + + + G + ILV+NA V + + +K FEVNV + F
Sbjct: 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWT 146
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASE---NI 186
T+ LP + K N G IV V+S G L AY SK A +G K + +LA+ +
Sbjct: 147 TKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGV 206
Query: 187 RVNCLAPGITKTKFAA 202
+ CL P T F
Sbjct: 207 KTTCLCPNFVNTGFIK 222
Score = 72.7 bits (179), Expect = 3e-14
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G + ILV+NA V L + +K F+VN+ + F T+ LP M K G IV
Sbjct: 106 IGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVT 164
Query: 752 VSSIGGF 758
V+S G
Sbjct: 165 VASAAGH 171
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPE---NIRVNCLAPGLIRTKFGD----RMIAMLSTDK 690
AY SK A G K + ++LA ++ CL P + T F + L ++
Sbjct: 179 AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSLGPTLEPEE 236
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 167 bits (425), Expect = 3e-47
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 22/263 (8%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+L +V +VT +S G+G A+ + L+ EGA+V+ K + L +
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA----AVRFRN 59
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV----ECPENVWDKIFEVNVK 493
V + D A+++FG + LV+ A P ++ + + + VN+
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPG-EKILGRSGPHALDSFARTVAVNLI 118
Query: 494 STFLLTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
TF + + + + G IV +SI AY+ SK + LT A
Sbjct: 119 GTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAA 178
Query: 548 QDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM-GRLAVPDEMGGIVAFLC 606
++LA IRV +APGI T A + ++ + ++VP RL +E +V +C
Sbjct: 179 RELARFGIRVVTIAPGIFDTPMMAGM--PQDVQDALAASVPFPPRLGRAEEYAALVKHIC 236
Query: 607 SDDASYITGEVIVAAGG--MQSR 627
+ + GEVI G M R
Sbjct: 237 ENT--MLNGEVIRLDGALRMAPR 257
Score = 140 bits (354), Expect = 1e-37
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 16/213 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+L +V +VT +S G+G A+ + L+ EGA+V+ K + L +
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGA----AVRFRN 59
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV----ECPENVWDKIFEVNVK 124
V + D A+++FG + LV+ A P ++ + + + VN+
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPG-EKILGRSGPHALDSFARTVAVNLI 118
Query: 125 STFLLTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
TF + + + + G IV +SI AY+ SK + LT A
Sbjct: 119 GTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGGVAALTLPAA 178
Query: 179 QDLASENIRVNCLAPGITKTK-FAAAKKEVKKK 210
++LA IRV +APGI T A ++V+
Sbjct: 179 RELARFGIRVVTIAPGIFDTPMMAGMPQDVQDA 211
Score = 56.1 bits (136), Expect = 8e-09
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ SK + LT A +LA IRV +APG+ T
Sbjct: 162 AYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDT 198
Score = 49.1 bits (118), Expect = 2e-06
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPA------NEPLVECSEVVWDKIFDVNLKSSFLLTQEV 737
A+ + +G + LV+ A P + P + + + VNL +F + +
Sbjct: 71 ALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPH---ALDSFARTVAVNLIGTFNMIRLA 127
Query: 738 LPYMRKKK------GGSIVYVSSIGGF 758
M + + G IV +SI F
Sbjct: 128 AEVMSQGEPDADGERGVIVNTASIAAF 154
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 167 bits (424), Expect = 5e-47
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 20/259 (7%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ G VAV+T + G+G A A+RL +GAS V+ S + L
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN----NCVFAP 64
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA-----TGPVVECPENVWDKIFEVNV 492
V ++D Q A+ KFG +D+ V+ A + A + ++ +VN+
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 493 KSTFLLTQEVLPYIRKR------NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 546
TF + + V + + G I+ +S+ AYS SK ++G+T +
Sbjct: 125 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 184
Query: 547 AQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM-GRLAVPDEMGGIVAFL 605
A+DLA IRV +APG+ T +L E+ S VP RL P E +V +
Sbjct: 185 ARDLAPIGIRVMTIAPGLFGTPLLTSL--PEKVCNFLASQVPFPSRLGDPAEYAHLVQAI 242
Query: 606 CSDDASYITGEVIVAAGGM 624
+ ++ GEVI G +
Sbjct: 243 --IENPFLNGEVIRLDGAI 259
Score = 140 bits (355), Expect = 1e-37
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 16/214 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ G VAV+T + G+G A A+RL +GAS V+ S + L
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN----NCVFAP 64
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA-----TGPVVECPENVWDKIFEVNV 123
V ++D Q A+ KFG +D+ V+ A + A + ++ +VN+
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 124 KSTFLLTQEVLPYIRKR------NGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 177
TF + + V + + G I+ +S+ AYS SK ++G+T +
Sbjct: 125 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 184
Query: 178 AQDLASENIRVNCLAPGITKTK-FAAAKKEVKKK 210
A+DLA IRV +APG+ T + ++V
Sbjct: 185 ARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNF 218
Score = 56.5 bits (137), Expect = 7e-09
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AYS SK + G+T +A DLAP IRV +APGL T
Sbjct: 169 AYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGT 205
Score = 47.3 bits (113), Expect = 7e-06
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLVE-----CSEVVWDKIFDVNLKSSFLLTQEVL 738
A+ +G +D+ V+ A + A++ + + ++ DVNL +F + + V
Sbjct: 76 ALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVA 135
Query: 739 PYMRKKK------GGSIVYVSSIGGF 758
M + + G I+ +S+ F
Sbjct: 136 GEMGQNEPDQGGQRGVIINTASVAAF 161
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 162 bits (413), Expect = 7e-46
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 6/201 (2%)
Query: 12 GKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCH 70
KVAV+T AS GIG AIA+ L+ +G ++ + +R + K L +E ++
Sbjct: 2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLD 60
Query: 71 VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLT 130
V+K E ++ + ++FG +D++V+NA + + E E + ++ EVN+ +
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELSEEEFHEMIEVNLLGVWRTL 119
Query: 131 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 190
+ L +++ G ++V S + G Y +K A L + + + ++R
Sbjct: 120 KAFLDSLKRTGGLALVTTSDVSA-RLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFE 176
Query: 191 LAPGITKTKFAAAKKEVKKKE 211
L PG T F +K K++
Sbjct: 177 LRPGAVDTYFGGSKPGKPKEK 197
Score = 161 bits (409), Expect = 3e-45
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 6/200 (3%)
Query: 381 GKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCH 439
KVAV+T AS GIG AIA+ L+ +G ++ + +R + K L +E ++
Sbjct: 2 MKVAVITGASR-GIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLD 60
Query: 440 VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLT 499
V+K E ++ + ++FG +D++V+NA + + E E + ++ EVN+ +
Sbjct: 61 VSKAESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELSEEEFHEMIEVNLLGVWRTL 119
Query: 500 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 559
+ L +++ G ++V S + G Y +K A L + + + ++R
Sbjct: 120 KAFLDSLKRTGGLALVTTSDVSA-RLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFE 176
Query: 560 LAPGITKTKFAAALYETEEA 579
L PG T F + +
Sbjct: 177 LRPGAVDTYFGGSKPGKPKE 196
Score = 70.6 bits (174), Expect = 9e-14
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
+G +D++V+NA + + L E SE + ++ +VNL + + L +++ G ++V
Sbjct: 78 FGDVDVVVANAGLGY-FKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVT 136
Query: 752 VSSIGG 757
S +
Sbjct: 137 TSDVSA 142
Score = 35.6 bits (83), Expect = 0.037
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGD 680
G Y +K A L + + ++R L PG + T FG
Sbjct: 149 GGYVSTKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFGG 188
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 161 bits (409), Expect = 3e-44
Identities = 66/282 (23%), Positives = 113/282 (40%), Gaps = 34/282 (12%)
Query: 377 SRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI----------SSRKESNVNKAVETLQ 426
+ G+V +VT + GIG A A + EGA VV+ + S V+ +
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 427 KEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDK 486
G + ++ +VA + L + A + FGG+D+LV+NA + + E +D
Sbjct: 83 AAGGEAVA-DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV-RDRMIANTSEEEFDA 140
Query: 487 IFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSSIGGLAPFKLLGA-----YSVS 535
+ V++K F + Y R K G I+ SS GL G+ YS +
Sbjct: 141 VIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGL-----QGSVGQGNYSAA 195
Query: 536 KTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVP 595
K + LT A ++ + VN +AP T+ ++ E+ + P
Sbjct: 196 KAGIATLTLVGAAEMGRYGVTVNAIAPSAR-TRMTETVFA-----EMMATQDQDFDAMAP 249
Query: 596 DEMGGIVAFLCSDDASYITGEVIVAAGGMQSRLTKSTVEFRF 637
+ + +V +L S +A +TG+V GG +
Sbjct: 250 ENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQI 291
Score = 128 bits (323), Expect = 1e-32
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 28/209 (13%)
Query: 8 SRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI----------SSRKESNVNKAVETLQ 57
+ G+V +VT + GIG A A +AEGA VV+ + S V+ +
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 58 KEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDK 117
G + ++ +VA + L + A + FGG+D+LV+NA + + E +D
Sbjct: 83 AAGGEAVA-DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV-RDRMIANTSEEEFDA 140
Query: 118 IFEVNVKSTFLLTQEVLPYIR------KRNGGSIVYVSSIGGLAPFKLLGA-----YSVS 166
+ V++K F + Y R K G I+ SS G L G+ YS +
Sbjct: 141 VIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG-----LQGSVGQGNYSAA 195
Query: 167 KTALLGLTKAVAQDLASENIRVNCLAPGI 195
K + LT A ++ + VN +AP
Sbjct: 196 KAGIATLTLVGAAEMGRYGVTVNAIAPSA 224
Score = 58.2 bits (141), Expect = 4e-09
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 679 GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
+I + + +GG+D+LV+NA + + + SE +D + V+LK F +
Sbjct: 101 AAGLIQ--TAVETFGGLDVLVNNAGIV-RDRMIANTSEEEFDAVIAVHLKGHFATMRHAA 157
Query: 739 PYMR------KKKGGSIVYVSSIGG 757
Y R K G I+ SS G
Sbjct: 158 AYWRGLSKAGKAVDGRIINTSSGAG 182
Score = 47.0 bits (112), Expect = 1e-05
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDIL 698
YS +K + LT V A ++ + VN +AP RT RM + + +
Sbjct: 192 YSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ART----RMTETVFAEMMATQDQDF 244
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 157 bits (400), Expect = 9e-44
Identities = 73/267 (27%), Positives = 108/267 (40%), Gaps = 32/267 (11%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ VAVVT + G+G A KRL GA VV+ + E + + +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG-------EDVVADLGDRARFAA 58
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT------GPVVECPENVWDKIFEVN 491
V + + AE G + I+V+ A A G + KI ++N
Sbjct: 59 ADVTDEAAVASALDLAET-MGTLRIVVNCAGTGNAIRVLSRDGVF---SLAAFRKIVDIN 114
Query: 492 VKSTFLLTQEVLPYIRKRN--------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
+ +F + + I K G I+ +S+ AYS SK ++G+T
Sbjct: 115 LVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMT 174
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM-GRLAVPDEMGGIV 602
+A+DLAS IRV +APG+ T A+L EEA VP RL PDE G +
Sbjct: 175 LPIARDLASHRIRVMTIAPGLFDTPLLASL--PEEARASLGKQVPHPSRLGNPDEYGALA 232
Query: 603 AFLCSDDASYITGEVIVAAGG--MQSR 627
+ + + GEVI G M R
Sbjct: 233 VHIIENP--MLNGEVIRLDGAIRMAPR 257
Score = 130 bits (330), Expect = 3e-34
Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ VAVVT + G+G A KRL GA VV+ + E + + +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG-------EDVVADLGDRARFAA 58
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPAT------GPVVECPENVWDKIFEVN 122
V + + AE G + I+V+ A A G + KI ++N
Sbjct: 59 ADVTDEAAVASALDLAET-MGTLRIVVNCAGTGNAIRVLSRDGVF---SLAAFRKIVDIN 114
Query: 123 VKSTFLLTQEVLPYIRKRN--------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 174
+ +F + + I K G I+ +S+ AYS SK ++G+T
Sbjct: 115 LVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMT 174
Query: 175 KAVAQDLASENIRVNCLAPGITKTK-FAAAKKEVKKK 210
+A+DLAS IRV +APG+ T A+ +E +
Sbjct: 175 LPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARAS 211
Score = 55.7 bits (135), Expect = 1e-08
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AYS SK + G+T +A DLA IRV +APGL T
Sbjct: 162 AYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDT 198
Score = 46.1 bits (110), Expect = 2e-05
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPANEPLV---ECSEVVWDKIFDVNLKSSFLLTQEVLPY 740
+ L + G + I+V+ A A L S + KI D+NL SF + +
Sbjct: 69 SALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAER 128
Query: 741 MRK--------KKGGSIVYVSSIGGF 758
+ K ++ G I+ +S+ F
Sbjct: 129 IAKTEPVGPNAEERGVIINTASVAAF 154
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 154 bits (391), Expect = 2e-42
Identities = 57/209 (27%), Positives = 105/209 (50%), Gaps = 11/209 (5%)
Query: 1 MSTAVNASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKE 59
M+ R ++A+VT AS GIG A+A+ L +G VV +R N+ + +
Sbjct: 22 MARP-GMERWRDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA 79
Query: 60 GHQ-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
G+ + C ++ +ED +F + G+DI ++NA + ++ + W +
Sbjct: 80 GYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARP-DTLLSGSTSGWKDM 138
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGS--IVYVSSIGGLA--PFKLLGAYSVSKTALLGLT 174
F VNV + + T+E +++RN I+ ++S+ G P + YS +K A+ LT
Sbjct: 139 FNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALT 198
Query: 175 KAVAQDLASE--NIRVNCLAPGITKTKFA 201
+ + Q+L +IR C++PG+ +T+FA
Sbjct: 199 EGLRQELREAQTHIRATCISPGVVETQFA 227
Score = 153 bits (390), Expect = 3e-42
Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 11/223 (4%)
Query: 370 MSTAVNASRLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKE 428
M+ R ++A+VT AS GIG A+A+ L +G VV +R N+ + +
Sbjct: 22 MARP-GMERWRDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA 79
Query: 429 GHQ-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 487
G+ + C ++ +ED +F + G+DI ++NA + ++ + W +
Sbjct: 80 GYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARP-DTLLSGSTSGWKDM 138
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGS--IVYVSSIGGLA--PFKLLGAYSVSKTALLGLT 543
F VNV + + T+E +++RN I+ ++S+ G P + YS +K A+ LT
Sbjct: 139 FNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALT 198
Query: 544 KAVAQDLASE--NIRVNCLAPGITKTKFAAALYETEEAHEIAV 584
+ + Q+L +IR C++PG+ +T+FA L++ + A
Sbjct: 199 EGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT 241
Score = 64.2 bits (157), Expect = 2e-11
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 687 STDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKG 746
+ + G+DI ++NA + + L+ S W +F+VN+ + + T+E M+++
Sbjct: 104 AIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNV 162
Query: 747 GS--IVYVSSIGGFKQF 761
I+ ++S+ G +
Sbjct: 163 DDGHIININSMSGHRVL 179
Score = 33.0 bits (76), Expect = 0.27
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 641 YSVSKTALFGLTKVVAEDLAPE--NIRVNCLAPGLIRTKFGDRMI--AMLSTDKLYGGID 696
YS +K A+ LT+ + ++L +IR C++PG++ T+F ++ Y +
Sbjct: 187 YSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMK 246
Query: 697 IL 698
L
Sbjct: 247 CL 248
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 153 bits (389), Expect = 2e-42
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 5/196 (2%)
Query: 7 ASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKIS 65
S L GKVA++T ASS GIG A A+ L+AEGA+V I++R+ + + L G K+
Sbjct: 2 PSALQGKVALITGASS-GIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVH 59
Query: 66 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 125
+ VA ++ + GG+DILV+NA + GPV + W ++ + N+
Sbjct: 60 VLELDVADRQGVDAAVASTVEALGGLDILVNNAGIML-LGPVEDADTTDWTRMIDTNLLG 118
Query: 126 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 185
+T+ LP++ R+ G++V +SSI G + Y +K + ++ + Q++
Sbjct: 119 LMYMTRAALPHL-LRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERG 177
Query: 186 IRVNCLAPGITKTKFA 201
+RV + PG T T+
Sbjct: 178 VRVVVIEPGTTDTELR 193
Score = 151 bits (384), Expect = 1e-41
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 5/196 (2%)
Query: 376 ASRLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKIS 434
S L GKVA++T ASS GIG A A+ L+ EGA+V I++R+ + + L G K+
Sbjct: 2 PSALQGKVALITGASS-GIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGA-KVH 59
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
+ VA ++ + GG+DILV+NA + GPV + W ++ + N+
Sbjct: 60 VLELDVADRQGVDAAVASTVEALGGLDILVNNAGIML-LGPVEDADTTDWTRMIDTNLLG 118
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
+T+ LP++ R+ G++V +SSI G + Y +K + ++ + Q++
Sbjct: 119 LMYMTRAALPHL-LRSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERG 177
Query: 555 IRVNCLAPGITKTKFA 570
+RV + PG T T+
Sbjct: 178 VRVVVIEPGTTDTELR 193
Score = 60.6 bits (148), Expect = 2e-10
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
GG+DILV+NA + P+ + W ++ D NL +T+ LP++ + K G++V
Sbjct: 82 LGGLDILVNNAGIMLL-GPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQ 139
Query: 752 VSSIGGFKQF 761
+SSI G
Sbjct: 140 MSSIAGRVNV 149
Score = 38.3 bits (90), Expect = 0.006
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF-------GDRMIAMLSTDKL 691
Y +K + ++ + +++ +RV + PG T+ + + ++
Sbjct: 153 AVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMY----EQR 208
Query: 692 YGGIDIL 698
I L
Sbjct: 209 ISQIRKL 215
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 151 bits (384), Expect = 3e-42
Identities = 39/238 (16%), Positives = 77/238 (32%), Gaps = 41/238 (17%)
Query: 381 GKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 440
++ +S +G A+ +RL + A V+ + R V +
Sbjct: 3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------------DVTVDI 43
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 500
+ +K++E + G +D +VS P+ E + L
Sbjct: 44 TNIDSIKKMYE----QVGKVDAIVSATGSATF-SPLTELTPEKNAVTISSKLGGQINLVL 98
Query: 501 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 560
+ + GS + I P + +++ A+ K+ A ++ IR+N +
Sbjct: 99 LGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRINTV 155
Query: 561 APGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI 618
+P + + + E VP ++A AF S TGE
Sbjct: 156 SPNVLEESWDKLEPFFE-----GFLPVPAAKVA--------RAFEKSVFG-AQTGESY 199
Score = 148 bits (375), Expect = 5e-41
Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 27/194 (13%)
Query: 11 TGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCH 70
++ +S +G A+ +RL + A V+ + R V
Sbjct: 2 NAMKILLIGASGTLGSAVKERL-EKKAEVITAGRHSG------------------DVTVD 42
Query: 71 VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLT 130
+ + +K++E + G +D +VS P+ E + L
Sbjct: 43 ITNIDSIKKMYE----QVGKVDAIVSATGSATF-SPLTELTPEKNAVTISSKLGGQINLV 97
Query: 131 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 190
+ + GS + I P + +++ A+ K+ A ++ IR+N
Sbjct: 98 LLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPR-GIRINT 154
Query: 191 LAPGITKTKFAAAK 204
++P + + + +
Sbjct: 155 VSPNVLEESWDKLE 168
Score = 70.0 bits (172), Expect = 7e-14
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G +D +VS PL E + L L + + GS
Sbjct: 56 VGKVDAIVSATGSATF-SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLN--DKGSFTL 112
Query: 752 VSSIGGFK 759
+ I
Sbjct: 113 TTGIMMED 120
Score = 49.6 bits (119), Expect = 6e-07
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
+ +++ A+ K A ++ IR+N ++P ++
Sbjct: 126 ASAAMANGAVTAFAKSAAIEMPR-GIRINTVSPNVLEE 162
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 152 bits (386), Expect = 3e-42
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 13 KVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 71
+ V+T ASS G+G +AK AEG + ++ R ES + T+ + +
Sbjct: 2 SLIVITGASS-GLGAELAKLYDAEGKATYLTGRSES----KLSTVTNCLSNNVGYRARDL 56
Query: 72 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 131
A ++ ++LFE +V +A G + E + E N+ S + +
Sbjct: 57 ASHQEVEQLFEQL---DSIPSTVVHSAGSGY-FGLLQEQDPEQIQTLIENNLSSAINVLR 112
Query: 132 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 191
E++ + + +V + S P Y K A+ GL ++V +L + +++ +
Sbjct: 113 ELVKRYKDQPVN-VVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAV 171
Query: 192 APGITKTKFAAAKKEVKKKET 212
PG T+F + +
Sbjct: 172 YPGGMATEFWETSGKSLDTSS 192
Score = 150 bits (381), Expect = 2e-41
Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 14/202 (6%)
Query: 382 KVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHV 440
+ V+T ASS G+G +AK EG + ++ R ES + T+ + +
Sbjct: 2 SLIVITGASS-GLGAELAKLYDAEGKATYLTGRSES----KLSTVTNCLSNNVGYRARDL 56
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 500
A ++ ++LFE +V +A G + E + E N+ S + +
Sbjct: 57 ASHQEVEQLFEQL---DSIPSTVVHSAGSGY-FGLLQEQDPEQIQTLIENNLSSAINVLR 112
Query: 501 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 560
E++ + + +V + S P Y K A+ GL ++V +L + +++ +
Sbjct: 113 ELVKRYKDQPVN-VVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAV 171
Query: 561 APGITKTKF---AAALYETEEA 579
PG T+F + +T
Sbjct: 172 YPGGMATEFWETSGKSLDTSSF 193
Score = 66.0 bits (162), Expect = 3e-12
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 689 DKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGS 748
++L +V +A L E + + NL S+ + +E++ + +
Sbjct: 67 EQLDSIPSTVVHSAGSGYF-GLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVN- 124
Query: 749 IVYVSSIGGFK 759
+V + S +
Sbjct: 125 VVMIMSTAAQQ 135
Score = 46.4 bits (111), Expect = 1e-05
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDI- 697
Y K A+ GL + V +L + +++ + PG + T+F + L T D
Sbjct: 141 STYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMSAEDAA 200
Query: 698 -LVSNAAVNPAN 708
++ A N N
Sbjct: 201 LMIHGALANIGN 212
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 152 bits (386), Expect = 8e-42
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 1 MSTAVNAS-RLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQK 58
M+ K+ V+T ASS GIG AIA+R S EG +++ +R+ E L+
Sbjct: 4 MTGGQQMGRGSMKKLVVITGASS-GIGEAIARRFSEEGHPLLLLARRV-------ERLKA 55
Query: 59 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 118
V K AEK +G D +V+NA + G + N W ++
Sbjct: 56 LNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRM 114
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
F+VNV Q VL ++ RN G+I+ +SSI G F AY +K A+ +++ V
Sbjct: 115 FDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVR 174
Query: 179 QDLASENIRVNCLAPGITKTKFA 201
+++A+ N+RV +AP KT+
Sbjct: 175 EEVAASNVRVMTIAPSAVKTELL 197
Score = 151 bits (383), Expect = 2e-41
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 370 MSTAVNAS-RLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQK 427
M+ K+ V+T ASS GIG AIA+R S EG +++ +R+ E L+
Sbjct: 4 MTGGQQMGRGSMKKLVVITGASS-GIGEAIARRFSEEGHPLLLLARRV-------ERLKA 55
Query: 428 EGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKI 487
V K AEK +G D +V+NA + G + N W ++
Sbjct: 56 LNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRM 114
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
F+VNV Q VL ++ RN G+I+ +SSI G F AY +K A+ +++ V
Sbjct: 115 FDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISENVR 174
Query: 548 QDLASENIRVNCLAPGITKTKFA 570
+++A+ N+RV +AP KT+
Sbjct: 175 EEVAASNVRVMTIAPSAVKTELL 197
Score = 64.2 bits (157), Expect = 2e-11
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 687 STDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKG 746
+K+YG D +V+NA + + W ++FDVN+ Q VL M+ +
Sbjct: 80 RAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNC 138
Query: 747 GSIVYVSSIGGFKQF 761
G+I+ +SSI G K F
Sbjct: 139 GTIINISSIAGKKTF 153
Score = 36.4 bits (85), Expect = 0.021
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGD 680
AY +K A+ +++ V E++A N+RV +AP ++T+
Sbjct: 157 AAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLS 198
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 154 bits (390), Expect = 9e-42
Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 30/268 (11%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI---------SSRKESNVNK 420
M++ + R G+V +VT + G+G A A + GA VV+ + S +K
Sbjct: 1 MASPL---RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADK 57
Query: 421 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 480
VE +++ G + V + E +KL + A FG ID++V+NA +
Sbjct: 58 VVEEIRRRGGK----AVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL-RDRSFSRIS 112
Query: 481 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 540
+ WD I V+++ +F +T+ +++K+N G I+ +S G+ YS +K LL
Sbjct: 113 DEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLL 172
Query: 541 GLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGG 600
GL + + NI N +AP ++ + + + P+ +
Sbjct: 173 GLANTLVIEGRKNNIHCNTIAPNA-GSRMTETVMPEDLVEALK-----------PEYVAP 220
Query: 601 IVAFLCSDDASYITGEVIVAAGGMQSRL 628
+V +LC + G + G +L
Sbjct: 221 LVLWLCHESC-EENGGLFEVGAGWIGKL 247
Score = 134 bits (339), Expect = 7e-35
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI---------SSRKESNVNK 51
M++ + R G+V +VT + G+G A A + GA VV+ + S +K
Sbjct: 1 MASPL---RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADK 57
Query: 52 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 111
VE +++ G + V + E +KL + A FG ID++V+NA +
Sbjct: 58 VVEEIRRRGGK----AVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL-RDRSFSRIS 112
Query: 112 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 171
+ WD I V+++ +F +T+ +++K+N G I+ +S G+ YS +K LL
Sbjct: 113 DEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAKLGLL 172
Query: 172 GLTKAVAQDLASENIRVNCLAPG 194
GL + + NI N +AP
Sbjct: 173 GLANTLVIEGRKNNIHCNTIAPN 195
Score = 65.8 bits (161), Expect = 1e-11
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 679 GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
G++++ + +G ID++V+NA + + S+ WD I V+L+ SF +T+
Sbjct: 79 GEKLVK--TALDTFGRIDVVVNNAGIL-RDRSFSRISDEDWDIIQRVHLRGSFQVTRAAW 135
Query: 739 PYMRKKKGGSIVYVSSIGG 757
+M+K+ G I+ +S G
Sbjct: 136 DHMKKQNYGRIIMTASASG 154
Score = 46.6 bits (111), Expect = 2e-05
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLY 692
YS +K L GL + + NI N +AP + RM + + L
Sbjct: 164 YSAAKLGLLGLANTLVIEGRKNNIHCNTIAPN-AGS----RMTETVMPEDLV 210
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 151 bits (385), Expect = 1e-41
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 5/203 (2%)
Query: 1 MSTAVNASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKE 59
S V +T A+S G G A A+R + G S+V++ R+E + L +
Sbjct: 10 SSGLVPRGSHMSSTLFITGATS-GFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK 68
Query: 60 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 119
++ + V + ++ ++F + L++NA + T P C + WD +
Sbjct: 69 T--RVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMV 126
Query: 120 EVNVKSTFLLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 178
+ N+K T+ +LP + G SIV + S+ G P+ Y +K + + +
Sbjct: 127 DTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLR 186
Query: 179 QDLASENIRVNCLAPGITKTKFA 201
DL +RV L PG+ +++F+
Sbjct: 187 CDLQGTGVRVTNLEPGLCESEFS 209
Score = 151 bits (384), Expect = 2e-41
Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 16/223 (7%)
Query: 370 MSTAVNASRLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKE 428
S V +T A+S G G A A+R + G S+V++ R+E + L +
Sbjct: 10 SSGLVPRGSHMSSTLFITGATS-GFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK 68
Query: 429 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 488
++ + V + ++ ++F + L++NA + T P C + WD +
Sbjct: 69 T--RVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMV 126
Query: 489 EVNVKSTFLLTQEVLPYIRKRN-GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVA 547
+ N+K T+ +LP + G SIV + S+ G P+ Y +K + + +
Sbjct: 127 DTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQFSLNLR 186
Query: 548 QDLASENIRVNCLAPGITKTKF-----------AAALYETEEA 579
DL +RV L PG+ +++F Y
Sbjct: 187 CDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARYDKTYAGAHP 229
Score = 61.1 bits (149), Expect = 2e-10
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ L + + + L++NA + +P C WD + D N+K T+ +LP
Sbjct: 85 SAAVDNLPEE--FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLP 142
Query: 740 YMRKKK-GGSIVYVSSIGGFK 759
+ G SIV + S+ G
Sbjct: 143 RLIAHGAGASIVNLGSVAGKW 163
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF------GDRMIAMLSTDKLYGG 694
Y +K + + + DL +RV L PGL ++F GD+ DK Y G
Sbjct: 171 YGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARY----DKTYAG 226
Query: 695 IDILV 699
+
Sbjct: 227 AHPIQ 231
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 150 bits (382), Expect = 3e-41
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 10 LTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ KV ++T AS GIG IA+ L GA +++ +R+++ + ++ G V
Sbjct: 2 VMDKVILITGASG-GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQV 59
Query: 69 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 128
V + + A +G ID+LV+NA V P P+ + W+++ +VN+K
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMP-LSPLAAVKVDEWERMIDVNIKGVLW 118
Query: 129 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 188
VLP + + G I+ + SIG L+ Y +K A+ ++ + Q+ S NIRV
Sbjct: 119 GIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRV 176
Query: 189 NCLAPGITKTKFA 201
C+ PG+ +++ A
Sbjct: 177 TCVNPGVVESELA 189
Score = 149 bits (378), Expect = 1e-40
Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 6/193 (3%)
Query: 379 LAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVV 437
+ KV ++T AS GIG IA+ L GA +++ +R+++ + ++ G V
Sbjct: 2 VMDKVILITGASG-GIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGG-TALAQV 59
Query: 438 CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V + + A +G ID+LV+NA V P P+ + W+++ +VN+K
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMP-LSPLAAVKVDEWERMIDVNIKGVLW 118
Query: 498 LTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRV 557
VLP + + G I+ + SIG L+ Y +K A+ ++ + Q+ S NIRV
Sbjct: 119 GIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQE--STNIRV 176
Query: 558 NCLAPGITKTKFA 570
C+ PG+ +++ A
Sbjct: 177 TCVNPGVVESELA 189
Score = 66.4 bits (163), Expect = 4e-12
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 687 STDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKG 746
+ +G ID+LV+NA V P PL W+++ DVN+K VLP M ++
Sbjct: 74 AAVDTWGRIDVLVNNAGVMPL-SPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS 132
Query: 747 GSIVYVSSIGGFKQF 761
G I+ + SIG
Sbjct: 133 GQIINIGSIGALSVV 147
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 151 bits (383), Expect = 3e-41
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 5/193 (2%)
Query: 11 TGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCH 70
+ KV +VT +S G G AIA+ A G +V+ ++R+ A++ L + +
Sbjct: 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE----ALDDLVAAYPDRAEAISLD 59
Query: 71 VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLT 130
V E + ++G +D+LV+NA G E E +FE++V LT
Sbjct: 60 VTDGERIDVVAADVLARYGRVDVLVNNAGRT-QVGAFEETTERELRDLFELHVFGPARLT 118
Query: 131 QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNC 190
+ +LP +R+R GS+V +SS GG F AYS +K AL L++ +A ++A I+V
Sbjct: 119 RALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLI 178
Query: 191 LAPGITKTKFAAA 203
+ PG +T
Sbjct: 179 VEPGAFRTNLFGK 191
Score = 149 bits (378), Expect = 2e-40
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 5/191 (2%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
KV +VT +S G G AIA+ G +V+ ++R+ A++ L + + V
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE----ALDDLVAAYPDRAEAISLDVT 61
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
E + ++G +D+LV+NA G E E +FE++V LT+
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRT-QVGAFEETTERELRDLFELHVFGPARLTRA 120
Query: 502 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 561
+LP +R+R GS+V +SS GG F AYS +K AL L++ +A ++A I+V +
Sbjct: 121 LLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVE 180
Query: 562 PGITKTKFAAA 572
PG +T
Sbjct: 181 PGAFRTNLFGK 191
Score = 68.4 bits (168), Expect = 9e-13
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 692 YGGIDILVSNA--AVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
YG +D+LV+NA A E E +E +F++++ LT+ +LP MR++ GS+
Sbjct: 77 YGRVDVLVNNAGRTQVGAFE---ETTERELRDLFELHVFGPARLTRALLPQMRERGSGSV 133
Query: 750 VYVSSIGGF 758
V +SS GG
Sbjct: 134 VNISSFGGQ 142
Score = 49.6 bits (119), Expect = 2e-06
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDR 681
AYS +K AL L++ +A+++AP I+V + PG RT +
Sbjct: 147 GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGK 191
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 150 bits (380), Expect = 3e-41
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 32/259 (12%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+ A+VT + G+G A A L G VV+ + + V V
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI-------------YVEGDVT 49
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV----ECPENVWDKIFEVNVKSTFL 497
++ED ++ A ++ + +VS A V A ++ + ++ EVN+ TF
Sbjct: 50 REEDVRRAVARA-QEEAPLFAVVSAAGVGLA-EKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 498 LTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 551
+ + +R+ G IV +S+ AY+ SK ++ LT A++LA
Sbjct: 108 VLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELA 167
Query: 552 SENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPM-GRLAVPDEMGGIVAFLCSDDA 610
IRV +APG+ T L E+A + VP RL P+E +V + +
Sbjct: 168 GWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPFPPRLGRPEEYAALVLHILENP- 224
Query: 611 SYITGEVIVAAGG--MQSR 627
+ GEV+ G M R
Sbjct: 225 -MLNGEVVRLDGALRMAPR 242
Score = 123 bits (310), Expect = 9e-32
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 26/209 (12%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+ A+VT + G+G A A L A G VV+ + + V V
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI-------------YVEGDVT 49
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV----ECPENVWDKIFEVNVKSTFL 128
++ED ++ A ++ + +VS A V A ++ + ++ EVN+ TF
Sbjct: 50 REEDVRRAVARA-QEEAPLFAVVSAAGVGLA-EKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 129 LTQEVLPYIRKRN------GGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLA 182
+ + +R+ G IV +S+ AY+ SK ++ LT A++LA
Sbjct: 108 VLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGVVALTLPAARELA 167
Query: 183 SENIRVNCLAPGITKTK-FAAAKKEVKKK 210
IRV +APG+ T ++ K
Sbjct: 168 GWGIRVVTVAPGLFDTPLLQGLPEKAKAS 196
Score = 55.7 bits (135), Expect = 1e-08
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
AY+ SK + LT A +LA IRV +APGL T
Sbjct: 147 AYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDT 183
Score = 46.5 bits (111), Expect = 1e-05
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 684 AMLSTDKLYGGIDILVSNAAVNPA------NEPLVECSEVVWDKIFDVNLKSSFLLTQEV 737
++ + + +VS A V A P + ++ +VNL +F + +
Sbjct: 56 RAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPH---GLESFRRVLEVNLLGTFNVLRLA 112
Query: 738 LPYMRKKK------GGSIVYVSSIGGF 758
MR+ G IV +S+ F
Sbjct: 113 AWAMRENPPDAEGQRGVIVNTASVAAF 139
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 151 bits (383), Expect = 4e-41
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 1 MSTAVN-ASRLTGKVAVVT-ASSDGIGFAIAKRLSAEG---ASVVISSRKESNVNKAVET 55
MS A RL K ++T AS+ GIG A A +++++R+ + + +T
Sbjct: 21 MSQGRKAAERLAKKTVLITGASA-GIGKATALEYLEASNGDMKLILAARRLEKLEELKKT 79
Query: 56 LQKEGHQ-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV 114
+ +E K+ + + E + E+ ++F IDILV+NA + V +
Sbjct: 80 IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED 139
Query: 115 WDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 174
+F+ NV + +TQ VLP + +N G IV + SI G + Y SK A+ T
Sbjct: 140 IQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFT 199
Query: 175 KAVAQDLASENIRVNCLAPGITKTKFA 201
++ ++L + IRV +APG+ +T+F+
Sbjct: 200 DSLRKELINTKIRVILIAPGLVETEFS 226
Score = 149 bits (379), Expect = 1e-40
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 370 MSTAVN-ASRLAGKVAVVT-ASSDGIGFAIAKRLSTEG---ASVVISSRKESNVNKAVET 424
MS A RLA K ++T AS+ GIG A A +++++R+ + + +T
Sbjct: 21 MSQGRKAAERLAKKTVLITGASA-GIGKATALEYLEASNGDMKLILAARRLEKLEELKKT 79
Query: 425 LQKEGHQ-KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV 483
+ +E K+ + + E + E+ ++F IDILV+NA + V +
Sbjct: 80 IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED 139
Query: 484 WDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLT 543
+F+ NV + +TQ VLP + +N G IV + SI G + Y SK A+ T
Sbjct: 140 IQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFT 199
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFA 570
++ ++L + IRV +APG+ +T+F+
Sbjct: 200 DSLRKELINTKIRVILIAPGLVETEFS 226
Score = 64.2 bits (157), Expect = 2e-11
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
I L + + IDILV+NA ++ + + + +FD N+ + +TQ VLP
Sbjct: 103 KPFIENLPQE--FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLP 160
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
+ K G IV + SI G
Sbjct: 161 IFQAKNSGDIVNLGSIAGRD 180
Score = 40.7 bits (96), Expect = 0.001
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKF------GDRMIAMLSTDKLY 692
Y SK A+ T + ++L IRV +APGL+ T+F G+ A +Y
Sbjct: 186 SIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQA----KNVY 241
Query: 693 GGIDILV 699
L+
Sbjct: 242 KDTTPLM 248
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 157 bits (400), Expect = 7e-41
Identities = 57/260 (21%), Positives = 111/260 (42%), Gaps = 27/260 (10%)
Query: 378 RLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI---------SSRKESNVNKAVETLQKE 428
KV ++T + G+G + + GA VV+ + V+ + K
Sbjct: 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN 64
Query: 429 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 488
G V D K+ E A K FG + ++++NA + + + E + +
Sbjct: 65 GGV----AVADYNNVLDGDKIVETAVKNFGTVHVIINNAGIL-RDASMKKMTEKDYKLVI 119
Query: 489 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQ 548
+V++ F +T+ PY +K+ G IV SS GL Y+ +K+ALLG + +A+
Sbjct: 120 DVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAK 179
Query: 549 DLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
+ A NI+ N +AP ++ ++ ++ P+++ +V +L S
Sbjct: 180 EGAKYNIKANAIAPLAR-SRMTESIMPPPMLEKLG-----------PEKVAPLVLYLSSA 227
Query: 609 DASYITGEVIVAAGGMQSRL 628
+ +TG+ A G +++
Sbjct: 228 EN-ELTGQFFEVAAGFYAQI 246
Score = 148 bits (375), Expect = 1e-37
Identities = 72/329 (21%), Positives = 137/329 (41%), Gaps = 24/329 (7%)
Query: 302 SITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKF--IEKVWEWK 359
+ RW R G + +A + ++ + + E + ++ + +
Sbjct: 244 AQIRWERSGGVLFKPDQSFTAEVVAKRF---SEILDYDDSRKPEYLKNQYPFMLNDYATL 300
Query: 360 KEVFSTSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVN 419
++ L KV ++T + G+G AK + GA VV++ +
Sbjct: 301 TNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDAT 358
Query: 420 KAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVEC 479
K V+ ++ G + VA +D + + ++ K+G IDILV+NA + +
Sbjct: 359 KTVDEIKAAGGEAW-PDQHDVA--KDSEAIIKNVIDKYGTIDILVNNAGILR-DRSFAKM 414
Query: 480 PENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTAL 539
+ WD + +V++ TF L++ PY ++ G I+ ++S G+ YS SK +
Sbjct: 415 SKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGI 474
Query: 540 LGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMG 599
LGL+K +A + A NI+VN +AP T ++ + L D++
Sbjct: 475 LGLSKTMAIEGAKNNIKVNIVAPHAE-TAMTLSIMREQ-----------DKNLYHADQVA 522
Query: 600 GIVAFLCSDDASYITGEVIVAAGGMQSRL 628
++ +L +DD +TGE GG
Sbjct: 523 PLLVYLGTDDV-PVTGETFEIGGGWIGNT 550
Score = 135 bits (343), Expect = 2e-33
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 9 RLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI---------SSRKESNVNKAVETLQKE 59
KV ++T + G+G + + GA VV+ + V+ + K
Sbjct: 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN 64
Query: 60 GHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIF 119
G V D K+ E A K FG + ++++NA + + + E + +
Sbjct: 65 GGV----AVADYNNVLDGDKIVETAVKNFGTVHVIINNAGIL-RDASMKKMTEKDYKLVI 119
Query: 120 EVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQ 179
+V++ F +T+ PY +K+ G IV SS GL Y+ +K+ALLG + +A+
Sbjct: 120 DVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSALLGFAETLAK 179
Query: 180 DLASENIRVNCLAPGI 195
+ A NI+ N +AP
Sbjct: 180 EGAKYNIKANAIAPLA 195
Score = 125 bits (317), Expect = 3e-30
Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 6/195 (3%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
++ L KV ++T + G+G AK + GA VV++ + K V+ ++ G
Sbjct: 311 DASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDATKTVDEIKAAG 368
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFE 120
+ VA +D + + ++ K+G IDILV+NA + + + WD + +
Sbjct: 369 GEAW-PDQHDVA--KDSEAIIKNVIDKYGTIDILVNNAGILR-DRSFAKMSKQEWDSVQQ 424
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQD 180
V++ TF L++ PY ++ G I+ ++S G+ YS SK +LGL+K +A +
Sbjct: 425 VHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIE 484
Query: 181 LASENIRVNCLAPGI 195
A NI+VN +AP
Sbjct: 485 GAKNNIKVNIVAPHA 499
Score = 66.3 bits (162), Expect = 2e-11
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 679 GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
GD+++ + K +G + ++++NA + + + + +E + + DV+L +F +T+
Sbjct: 78 GDKIVE--TAVKNFGTVHVIINNAGIL-RDASMKKMTEKDYKLVIDVHLNGAFAVTKAAW 134
Query: 739 PYMRKKKGGSIVYVSSIGG 757
PY +K+K G IV SS G
Sbjct: 135 PYFQKQKYGRIVNTSSPAG 153
Score = 65.9 bits (161), Expect = 3e-11
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 679 GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
+ +I + YG IDILV+NA + + + S+ WD + V+L +F L++
Sbjct: 382 SEAIIK--NVIDKYGTIDILVNNAGILR-DRSFAKMSKQEWDSVQQVHLIGTFNLSRLAW 438
Query: 739 PYMRKKKGGSIVYVSSIGG 757
PY +K+ G I+ ++S G
Sbjct: 439 PYFVEKQFGRIINITSTSG 457
Score = 47.4 bits (113), Expect = 2e-05
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLY 692
Y+ +K+AL G + +A++ A NI+ N +AP R+ RM + +
Sbjct: 163 YASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARS----RMTESIMPPPML 209
Score = 47.0 bits (112), Expect = 2e-05
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLY 692
YS SK + GL+K +A + A NI+VN +AP T M + ++
Sbjct: 467 YSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH-AET----AMTLSIMREQDK 513
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 147 bits (374), Expect = 1e-39
Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 6/220 (2%)
Query: 11 TGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVN----KAVETLQKEGHQKISG 66
+ K+ ++T +S G G A+ L+ G V S R N +A+ ++ +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRT 63
Query: 67 VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
+ V + + + + G ID+L+ NA GP + +++++NV ST
Sbjct: 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHM-VFGPAEAFTPEQFAELYDINVLST 122
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFK-LLGAYSVSKTALLGLTKAVAQDLASEN 185
+ + LP++R++ G ++++SS L Y +K A+ + A++L+
Sbjct: 123 QRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWG 182
Query: 186 IRVNCLAPGITKTKFAAAKKEVKKKETNDEPIVYTSNTAP 225
I + + PG + + + A
Sbjct: 183 IETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAG 222
Score = 144 bits (366), Expect = 2e-38
Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 6/223 (2%)
Query: 381 GKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVN----KAVETLQKEGHQKISGV 436
K+ ++T +S G G A+ L+ G V S R N +A+ ++ + +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
V + + + + G ID+L+ NA GP + +++++NV ST
Sbjct: 65 ELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHM-VFGPAEAFTPEQFAELYDINVLSTQ 123
Query: 497 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFK-LLGAYSVSKTALLGLTKAVAQDLASENI 555
+ + LP++R++ G ++++SS L Y +K A+ + A++L+ I
Sbjct: 124 RVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGI 183
Query: 556 RVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEM 598
+ + PG + + + G A E
Sbjct: 184 ETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEE 226
Score = 68.6 bits (168), Expect = 1e-12
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G ID+L+ NA P + + +++D+N+ S+ + + LP+MR++K G +++
Sbjct: 85 DGRIDVLIHNAGHMVFG-PAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIW 143
Query: 752 VSSIGGF 758
+SS
Sbjct: 144 ISSSSSA 150
Score = 49.0 bits (117), Expect = 3e-06
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 637 FIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLY 692
++ Y +K A+ + A +L+ I + + PG + + + D
Sbjct: 156 YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHAR 211
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 141 bits (358), Expect = 1e-38
Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 29/214 (13%)
Query: 384 AVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKK 443
++T ++ G+G A A+ L +G +++S R+ + + + + +A +
Sbjct: 3 VLITGATGGLGGAFARAL--KGHDLLLSGRRAGALAELAREVGARA------LPADLADE 54
Query: 444 EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVL 503
+ + L E G +D+LV V E ++ +++ ++ L VL
Sbjct: 55 LEAKALLEE----AGPLDLLVHAVGKAGR-ASVREAGRDLVEEMLAAHL----LTAAFVL 105
Query: 504 PYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPG 563
+ R + G V+ + AY+ +K AL +A ++L E + + +
Sbjct: 106 KHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLP 165
Query: 564 ITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDE 597
T A P P+E
Sbjct: 166 AVATGL------------WAPLGGPPKGALSPEE 187
Score = 140 bits (356), Expect = 2e-38
Identities = 34/189 (17%), Positives = 74/189 (39%), Gaps = 17/189 (8%)
Query: 15 AVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKK 74
++T ++ G+G A A+ L +G +++S R+ + + + + +A +
Sbjct: 3 VLITGATGGLGGAFARAL--KGHDLLLSGRRAGALAELAREVGARA------LPADLADE 54
Query: 75 EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVL 134
+ + L E G +D+LV V E ++ +++ ++ L VL
Sbjct: 55 LEAKALLEE----AGPLDLLVHAVGKAGR-ASVREAGRDLVEEMLAAHL----LTAAFVL 105
Query: 135 PYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPG 194
+ R + G V+ + AY+ +K AL +A ++L E + + +
Sbjct: 106 KHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLP 165
Query: 195 ITKTKFAAA 203
T A
Sbjct: 166 AVATGLWAP 174
Score = 64.1 bits (157), Expect = 1e-11
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G +D+LV + E + +++ +L L VL + R +KG V+
Sbjct: 64 AGPLDLLVHAVGKAGRA-SVREAGRDLVEEMLAAHL----LTAAFVLKHARFQKGARAVF 118
Query: 752 VSSIGGF 758
+ +
Sbjct: 119 FGAYPRY 125
Score = 54.1 bits (131), Expect = 3e-08
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 639 GAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRM 682
AY+ +K AL + ++L E + + + + T +
Sbjct: 132 AAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWAPL 175
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 140 bits (355), Expect = 1e-37
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 14 VAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+ +VT A++ G G I +R +G V+ + R++ ++ L+ E + V
Sbjct: 2 IVLVTGATA-GFGECITRRFIQQGHKVIATGRRQE----RLQELKDELGDNLYIAQLDVR 56
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
+ +++ ++ IDILV+NA + P + W+ + + N K +T+
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 133 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 192
VLP + +RN G I+ + S G P+ Y +K + + + DL +RV +
Sbjct: 117 VLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIE 176
Query: 193 PGITKT 198
PG+
Sbjct: 177 PGLVGG 182
Score = 138 bits (351), Expect = 4e-37
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 383 VAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+ +VT A++ G G I +R +G V+ + R++ ++ L+ E + V
Sbjct: 2 IVLVTGATA-GFGECITRRFIQQGHKVIATGRRQE----RLQELKDELGDNLYIAQLDVR 56
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 501
+ +++ ++ IDILV+NA + P + W+ + + N K +T+
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 502 VLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLA 561
VLP + +RN G I+ + S G P+ Y +K + + + DL +RV +
Sbjct: 117 VLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIE 176
Query: 562 PGITKT------------KFAAALYETEEA 579
PG+ A Y+ A
Sbjct: 177 PGLVGGTEFSNVRFKGDDGKAEKTYQNTVA 206
Score = 64.9 bits (159), Expect = 9e-12
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
+ M+A L + + IDILV+NA + EP + S W+ + D N K +T+ VLP
Sbjct: 62 EEMLASLPAE--WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLP 119
Query: 740 YMRKKKGGSIVYVSSIGGFK 759
M ++ G I+ + S G
Sbjct: 120 GMVERNHGHIINIGSTAGSW 139
Score = 34.4 bits (80), Expect = 0.093
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIR-TKF------GDRMIAMLSTDKLYG 693
Y +K + + + DL +RV + PGL+ T+F GD A +K Y
Sbjct: 147 YGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA----EKTYQ 202
Query: 694 GIDILV 699
L
Sbjct: 203 NTVALT 208
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 139 bits (351), Expect = 1e-36
Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 75/271 (27%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
M + + AVVT + GIGF I K+LS+ G VV++ R + ++AVE L+
Sbjct: 1 MPETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN 60
Query: 61 HQKISGVVCHVAKKED-RQKLFEHAEKKFGGIDILVSNAAV------------------- 100
H+ + V L + + FG +DILV+NA V
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 101 ----------NPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSS 150
P ++ + ++ ++N +T+ ++P ++ + IV VSS
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSS 180
Query: 151 IGG--------------------------------LAPFK-----------LLGAYSVSK 167
G L FK AY+ SK
Sbjct: 181 STGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSK 240
Query: 168 TALLGLTKAVAQDLASENIRVNCLAPGITKT 198
L T+ +A + +VNC+ PG+ KT
Sbjct: 241 ACLNAYTRVLANKI--PKFQVNCVCPGLVKT 269
Score = 137 bits (346), Expect = 5e-36
Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 75/271 (27%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
M + + AVVT + GIGF I K+LS+ G VV++ R + ++AVE L+
Sbjct: 1 MPETCPNTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN 60
Query: 430 HQKISGVVCHVAKKED-RQKLFEHAEKKFGGIDILVSNAAV------------------- 469
H+ + V L + + FG +DILV+NA V
Sbjct: 61 HENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGE 120
Query: 470 ----------NPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSS 519
P ++ + ++ ++N +T+ ++P ++ + IV VSS
Sbjct: 121 DSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSS 180
Query: 520 IGG--------------------------------LAPFK-----------LLGAYSVSK 536
G L FK AY+ SK
Sbjct: 181 STGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSK 240
Query: 537 TALLGLTKAVAQDLASENIRVNCLAPGITKT 567
L T+ +A + +VNC+ PG+ KT
Sbjct: 241 ACLNAYTRVLANKI--PKFQVNCVCPGLVKT 269
Score = 42.6 bits (100), Expect = 3e-04
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 29/95 (30%)
Query: 692 YGGIDILVSNAAV-----------------------------NPANEPLVECSEVVWDKI 722
+G +DILV+NA V P + L+ + + ++
Sbjct: 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEEC 148
Query: 723 FDVNLKSSFLLTQEVLPYMRKKKGGSIVYVSSIGG 757
+N +T+ ++P ++ IV VSS G
Sbjct: 149 LKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTG 183
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 143 bits (363), Expect = 4e-36
Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 27/268 (10%)
Query: 370 MSTAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVI---------SSRKESNVNK 420
MS++ R G+VAVVT + G+G A + GA VV+ + +
Sbjct: 8 MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADI 67
Query: 421 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 480
V+ ++K G + V D K+ E A K FG +DILV+NA + +V+
Sbjct: 68 VVDEIRKAGGE----AVADYNSVIDGAKVIETAIKAFGRVDILVNNAGIL-RDRSLVKTS 122
Query: 481 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 540
E W+ + +V++K +F TQ PY++K+N G I+ SS G+ Y+ +K L+
Sbjct: 123 EQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI 182
Query: 541 GLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGG 600
GL VA + A N+ N + P ++ + +E+ + P
Sbjct: 183 GLANTVAIEGARNNVLCNVIVPT-AASRMTEGILPDILFNELKPKLI------AP----- 230
Query: 601 IVAFLCSDDASYITGEVIVAAGGMQSRL 628
+VA+LC + G I +A G ++L
Sbjct: 231 VVAYLCHESCE-DNGSYIESAAGWATKL 257
Score = 129 bits (325), Expect = 3e-31
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 14/203 (6%)
Query: 1 MSTAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVI---------SSRKESNVNK 51
MS++ R G+VAVVT + G+G A + GA VV+ + +
Sbjct: 8 MSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADI 67
Query: 52 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 111
V+ ++K G + V D K+ E A K FG +DILV+NA + +V+
Sbjct: 68 VVDEIRKAGGE----AVADYNSVIDGAKVIETAIKAFGRVDILVNNAGIL-RDRSLVKTS 122
Query: 112 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALL 171
E W+ + +V++K +F TQ PY++K+N G I+ SS G+ Y+ +K L+
Sbjct: 123 EQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAKMGLI 182
Query: 172 GLTKAVAQDLASENIRVNCLAPG 194
GL VA + A N+ N + P
Sbjct: 183 GLANTVAIEGARNNVLCNVIVPT 205
Score = 62.5 bits (152), Expect = 3e-10
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 679 GDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVL 738
G ++I + K +G +DILV+NA + + LV+ SE W+ + DV+LK SF TQ
Sbjct: 89 GAKVIE--TAIKAFGRVDILVNNAGIL-RDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAF 145
Query: 739 PYMRKKKGGSIVYVSSIGGF 758
PYM+K+ G I+ SS G
Sbjct: 146 PYMKKQNYGRIIMTSSNSGI 165
Score = 44.0 bits (104), Expect = 2e-04
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 641 YSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLY 692
Y+ +K L GL VA + A N+ N + P + RM + D L+
Sbjct: 174 YTAAKMGLIGLANTVAIEGARNNVLCNVIVPT-AAS----RMTEGILPDILF 220
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 137 bits (348), Expect = 6e-36
Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 8/212 (3%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAE---GASVVISSRKESNVNKAVETLQKEG--HQKISGV 67
V ++T S GIG +A RL+++ V + R + E + + +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
V + E G +D+LV NA + GP+ E+ + +VNV T
Sbjct: 63 QLDVRDSKSVAAARERVT--EGRVDVLVCNAGLG-LLGPLEALGEDAVASVLDVNVVGTV 119
Query: 128 LLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIR 187
+ Q LP +++R G ++ S+GGL Y SK AL GL +++A L +
Sbjct: 120 RMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVH 179
Query: 188 VNCLAPGITKTKFAAAKKEVKKKETNDEPIVY 219
++ + G T F ++ + I
Sbjct: 180 LSLIECGPVHTAFMEKVLGSPEEVLDRTDIHT 211
Score = 137 bits (346), Expect = 9e-36
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 8/206 (3%)
Query: 380 AGKVAVVTASSDGIGFAIAKRL---STEGASVVISSRKESNVNKAVETLQKEG--HQKIS 434
A V ++T S GIG +A RL ++ V + R + E + +
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 435 GVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKS 494
+ V + E G +D+LV NA + GP+ E+ + +VNV
Sbjct: 61 TLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGLG-LLGPLEALGEDAVASVLDVNVVG 117
Query: 495 TFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN 554
T + Q LP +++R G ++ S+GGL Y SK AL GL +++A L
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177
Query: 555 IRVNCLAPGITKTKFAAALYETEEAH 580
+ ++ + G T F + + E
Sbjct: 178 VHLSLIECGPVHTAFMEKVLGSPEEV 203
Score = 65.5 bits (160), Expect = 1e-11
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 693 GGIDILVSNAAV-NPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G +D+LV NA + PL E + DVN+ + + Q LP M+++ G ++
Sbjct: 82 GRVDVLVCNAGLGLLG--PLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLV 139
Query: 752 VSSIGGF 758
S+GG
Sbjct: 140 TGSVGGL 146
Score = 47.4 bits (113), Expect = 9e-06
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 635 FRFIGAYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIA 684
F Y SK AL GL + +A L P + ++ + G + T F ++++
Sbjct: 149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLG 198
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 131 bits (332), Expect = 1e-34
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 28/222 (12%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGAS--VVISSRKESNVNKAVETLQKEGHQKISGVVCH 439
VVT ++ GIG + ++L + ++ ++R + L+ ++ +
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSIKDSRVHVLPLT 59
Query: 440 VAKKEDRQKLFEHAEKKFG--GIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFL 497
V + + G G+ +L++NA V + G E V + +VN S L
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119
Query: 498 LTQEVLPYIRK-----------RNGGSIVYVSSIGG-------LAPFKLLGAYSVSKTAL 539
LTQ++LP ++ + +++ +SS G + + AY +SK A+
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAI 179
Query: 540 LGLTKAVAQDLASENIRVNCLAPGITKTKF--AAALYETEEA 579
+ +A DL +N+ V PG +T A E++
Sbjct: 180 NMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQS 221
Score = 131 bits (331), Expect = 1e-34
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 26/210 (12%)
Query: 11 TGKVAVVTASSDGIGFAIAKRLSAEGAS--VVISSRKESNVNKAVETLQKEGHQKISGVV 68
+ VVT ++ GIG + ++L + ++ ++R + L+ ++ +
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSIKDSRVHVLP 57
Query: 69 CHVAKKEDRQKLFEHAEKKFG--GIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
V + + G G+ +L++NA V + G E V + +VN S
Sbjct: 58 LTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSV 117
Query: 127 FLLTQEVLPYIRK-----------RNGGSIVYVSSIGG-------LAPFKLLGAYSVSKT 168
LLTQ++LP ++ + +++ +SS G + + AY +SK
Sbjct: 118 VLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177
Query: 169 ALLGLTKAVAQDLASENIRVNCLAPGITKT 198
A+ + +A DL +N+ V PG +T
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQT 207
Score = 53.9 bits (130), Expect = 5e-08
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 694 GIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRK---------- 743
G+ +L++NA V + E + V + DVN S LLTQ++LP ++
Sbjct: 81 GLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140
Query: 744 -KKGGSIVYVSSIGG 757
+++ +SS G
Sbjct: 141 SVSRAAVITISSGLG 155
Score = 50.0 bits (120), Expect = 7e-07
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFG 679
AY +SK A+ + +A DL +N+ V PG ++T G
Sbjct: 171 AYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 127 bits (322), Expect = 4e-33
Identities = 55/240 (22%), Positives = 89/240 (37%), Gaps = 56/240 (23%)
Query: 11 TGKVAVVTASSDGIGFAIAKRL-SAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
VA+VT + GIG AI + L VV+++R + AV+ LQ EG
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS----PRF 58
Query: 70 H---VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 126
H + + + L + K++GG+D+LV+NA + + + N T
Sbjct: 59 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-FKVADPTPFHIQAEVTMKTNFFGT 117
Query: 127 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG------------------------- 161
+ E+LP I+ G +V VSSI + K
Sbjct: 118 RDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFV 175
Query: 162 ----------------AYSVSKTALLGLTKAVAQDLASE----NIRVNCLAPGITKTKFA 201
AY V+K + L++ A+ L+ + I +N PG +T A
Sbjct: 176 EDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235
Score = 127 bits (321), Expect = 7e-33
Identities = 55/240 (22%), Positives = 89/240 (37%), Gaps = 56/240 (23%)
Query: 380 AGKVAVVTASSDGIGFAIAKRL-STEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
VA+VT + GIG AI + L VV+++R + AV+ LQ EG
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS----PRF 58
Query: 439 H---VAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKST 495
H + + + L + K++GG+D+LV+NA + + + N T
Sbjct: 59 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-FKVADPTPFHIQAEVTMKTNFFGT 117
Query: 496 FLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG------------------------- 530
+ E+LP I+ G +V VSSI + K
Sbjct: 118 RDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFV 175
Query: 531 ----------------AYSVSKTALLGLTKAVAQDLASE----NIRVNCLAPGITKTKFA 570
AY V+K + L++ A+ L+ + I +N PG +T A
Sbjct: 176 EDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235
Score = 53.9 bits (130), Expect = 6e-08
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 690 KLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSI 749
K YGG+D+LV+NA + + + N + + E+LP + K G +
Sbjct: 78 KEYGGLDVLVNNAGIA-FKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLI--KPQGRV 134
Query: 750 VYVSSIGG 757
V VSSI
Sbjct: 135 VNVSSIMS 142
Score = 43.5 bits (103), Expect = 1e-04
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPE----NIRVNCLAPGLIRTKFG 679
AY V+K + L+++ A L+ + I +N PG +RT
Sbjct: 192 AYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 127 bits (321), Expect = 6e-33
Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 23/219 (10%)
Query: 382 KVAVVTASSDGIGFAIAKRL---STEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 438
++T + G+G + K L + + R K +E L K H I +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ-AKELEDLAKN-HSNIHILEI 79
Query: 439 HVAKKEDRQKLFEHAEKKFG--GIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 496
+ + KL E G+++L +NA + P + + + N
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139
Query: 497 LLTQEVLPYIRK-----------RNGGSIVYVSSIGG-LAPFKLLG--AYSVSKTALLGL 542
+L + LP ++K +I+ +SSI G + G AY SK+AL
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAA 199
Query: 543 TKAVAQDLASENIRVNCLAPGITKTKF--AAALYETEEA 579
TK+++ DL + I L PG KT ++A + +
Sbjct: 200 TKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLDVPTS 238
Score = 126 bits (318), Expect = 1e-32
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 21/205 (10%)
Query: 13 KVAVVTASSDGIGFAIAKRL---SAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
++T + G+G + K L + + R K +E L K H I +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ-AKELEDLAKN-HSNIHILEI 79
Query: 70 HVAKKEDRQKLFEHAEKKFG--GIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTF 127
+ + KL E G+++L +NA + P + + + N
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139
Query: 128 LLTQEVLPYIRK-----------RNGGSIVYVSSIGG-LAPFKLLG--AYSVSKTALLGL 173
+L + LP ++K +I+ +SSI G + G AY SK+AL
Sbjct: 140 MLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAA 199
Query: 174 TKAVAQDLASENIRVNCLAPGITKT 198
TK+++ DL + I L PG KT
Sbjct: 200 TKSLSVDLYPQRIMCVSLHPGWVKT 224
Score = 57.8 bits (140), Expect = 3e-09
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 680 DRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLP 739
D+++A + G+++L +NA + P + + N +L + LP
Sbjct: 88 DKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLP 147
Query: 740 YMRK-----------KKGGSIVYVSSIGG 757
++K +I+ +SSI G
Sbjct: 148 LLKKAAKANESQPMGVGRAAIINMSSILG 176
Score = 50.1 bits (120), Expect = 1e-06
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 640 AYSVSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFG 679
AY SK+AL TK ++ DL P+ I L PG ++T G
Sbjct: 188 AYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 227
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 122 bits (308), Expect = 4e-31
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 16/254 (6%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L K V+ A+ I F +AK L GA +V + RKE K +E L ++ +Q + +
Sbjct: 30 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER-SRKELEKLLEQLNQPEAHL 88
Query: 437 V-CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNV 492
V E+ FE K G ID + + A G E + +++
Sbjct: 89 YQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISS 148
Query: 493 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 549
S ++ E + GGSIV + +GG + Y+V +K +L K +A D
Sbjct: 149 YSLTIVAHEAKKLMP--EGGSIVATTYLGGE---FAVQNYNVMGVAKASLEANVKYLALD 203
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
L +NIRVN ++ G +T A + + P+ R E+G A+L SD
Sbjct: 204 LGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDL 263
Query: 610 ASYITGEVI-VAAG 622
+S +TGE I V +G
Sbjct: 264 SSGVTGENIHVDSG 277
Score = 87.7 bits (218), Expect = 3e-19
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L K V+ A+ I F +AK L GA +V + RKE K +E L ++ +Q + +
Sbjct: 30 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER-SRKELEKLLEQLNQPEAHL 88
Query: 68 V-CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNV 123
V E+ FE K G ID + + A G E + +++
Sbjct: 89 YQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISS 148
Query: 124 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 180
S ++ E + GGSIV + +GG + Y+V +K +L K +A D
Sbjct: 149 YSLTIVAHEAKKLMP--EGGSIVATTYLGGE---FAVQNYNVMGVAKASLEANVKYLALD 203
Query: 181 LASENIRVNCLAPGITKTKFAAA 203
L +NIRVN ++ G +T A
Sbjct: 204 LGPDNIRVNAISAGPIRTLSAKG 226
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V+K +L K +A DL P+NIRVN ++ G IRT
Sbjct: 188 VAKASLEANVKYLALDLGPDNIRVNAISAGPIRT 221
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 119 bits (302), Expect = 1e-30
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 16/253 (6%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L+GK A+V + +GFAIA +L GA V +S + E + E L + +
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALL-F 63
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 493
V + E+ LF ++ FGG+D LV A P G ++ W EV+
Sbjct: 64 RADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAY 123
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAY---SVSKTALLGLTKAVAQDL 550
S + + P +R GG IV ++ K++ Y +++K AL + +A +L
Sbjct: 124 SLVAVARRAEPLLR--EGGGIVTLTYYASE---KVVPKYNVMAIAKAALEASVRYLAYEL 178
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
+ +RVN ++ G +T A ++ + ++ P+ R +E+G + FL S A
Sbjct: 179 GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLA 238
Query: 611 SYITGEVI-VAAG 622
S ITGEV+ V AG
Sbjct: 239 SGITGEVVYVDAG 251
Score = 85.3 bits (212), Expect = 1e-18
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 15/202 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L+GK A+V + +GFAIA +L GA V +S + E + E L + +
Sbjct: 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALL-F 63
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 124
V + E+ LF ++ FGG+D LV A P G ++ W EV+
Sbjct: 64 RADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAY 123
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAY---SVSKTALLGLTKAVAQDL 181
S + + P +R GG IV ++ K++ Y +++K AL + +A +L
Sbjct: 124 SLVAVARRAEPLLR--EGGGIVTLTYYASE---KVVPKYNVMAIAKAALEASVRYLAYEL 178
Query: 182 ASENIRVNCLAPGITKTKFAAA 203
+ +RVN ++ G +T A +
Sbjct: 179 GPKGVRVNAISAGPVRTVAARS 200
Score = 40.2 bits (95), Expect = 0.001
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++K AL + +A +L P+ +RVN ++ G +RT
Sbjct: 162 IAKAALEASVRYLAYELGPKGVRVNAISAGPVRT 195
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 119 bits (302), Expect = 2e-30
Identities = 65/254 (25%), Positives = 112/254 (44%), Gaps = 16/254 (6%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L G+ VV A+ I + IA+ L GA ++ + E + K+V L + S +
Sbjct: 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER-LEKSVHELAGTLDRNDSII 63
Query: 437 V-CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNV 492
+ C V + + F +++ G I + A G + + + ++
Sbjct: 64 LPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISS 123
Query: 493 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 549
S + + P + GGSIV ++ +GG ++ Y+V +K +L K +A D
Sbjct: 124 YSLTAVVKAARPMMT--EGGSIVTLTYLGGE---LVMPNYNVMGVAKASLDASVKYLAAD 178
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
L ENIRVN ++ G +T A + + + P+ R P+E+G AFL SD
Sbjct: 179 LGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDM 238
Query: 610 ASYITGEVI-VAAG 622
+ ITGE + V +G
Sbjct: 239 SRGITGENLHVDSG 252
Score = 84.9 bits (211), Expect = 2e-18
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L G+ VV A+ I + IA+ L GA ++ + E + K+V L + S +
Sbjct: 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER-LEKSVHELAGTLDRNDSII 63
Query: 68 V-CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNV 123
+ C V + + F +++ G I + A G + + + ++
Sbjct: 64 LPCDVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISS 123
Query: 124 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 180
S + + P + GGSIV ++ +GG ++ Y+V +K +L K +A D
Sbjct: 124 YSLTAVVKAARPMMT--EGGSIVTLTYLGGE---LVMPNYNVMGVAKASLDASVKYLAAD 178
Query: 181 LASENIRVNCLAPGITKTKFAAA 203
L ENIRVN ++ G +T A
Sbjct: 179 LGKENIRVNSISAGPIRTLSAKG 201
Score = 39.9 bits (94), Expect = 0.002
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V+K +L K +A DL ENIRVN ++ G IRT
Sbjct: 163 VAKASLDASVKYLAADLGKENIRVNSISAGPIRT 196
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 118 bits (299), Expect = 8e-30
Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 16/276 (5%)
Query: 356 WEWKKEVFSTSTKIMSTAVNASRLAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSR 413
+ + + S + L GK ++ A++ I + IAK GA + + +
Sbjct: 6 HHHMGTLEAQTQGPGSMTAQSGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQ 65
Query: 414 KESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA- 472
++ + K VE L +E ++ C VA +FE EKK+G +D LV +
Sbjct: 66 GDA-LKKRVEPLAEELGAFVA-GHCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKD 123
Query: 473 --TGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG 530
TG ++ E + ++V S +++ + +GGSI+ ++ G K++
Sbjct: 124 ELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMA--DGGSILTLTYYGAE---KVMP 178
Query: 531 AYSV---SKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNV 587
Y+V +K AL K +A DL +NIRVN ++ G KT A+ + + + N
Sbjct: 179 NYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA 238
Query: 588 PMGRLAVPDEMGGIVAFLCSDDASYITGEVI-VAAG 622
P+ R DE+G + + SD + +TGEV +G
Sbjct: 239 PLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSG 274
Score = 82.3 bits (204), Expect = 2e-17
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 15/208 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GK ++ A++ I + IAK GA + + + ++ + K VE L +E ++
Sbjct: 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA-LKKRVEPLAEELGAFVA-G 86
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 124
C VA +FE EKK+G +D LV + TG ++ E + ++V
Sbjct: 87 HCDVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVY 146
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 181
S +++ + +GGSI+ ++ G K++ Y+V +K AL K +A DL
Sbjct: 147 SLTAVSRRAEKLMA--DGGSILTLTYYGAE---KVMPNYNVMGVAKAALEASVKYLAVDL 201
Query: 182 ASENIRVNCLAPGITKTKFAAAKKEVKK 209
+NIRVN ++ G KT A+ + +
Sbjct: 202 GPQNIRVNAISAGPIKTLAASGIGDFRY 229
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V+K AL K +A DL P+NIRVN ++ G I+T
Sbjct: 185 VAKAALEASVKYLAVDLGPQNIRVNAISAGPIKT 218
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 118 bits (297), Expect = 9e-30
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 16/253 (6%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L GK ++ A++ I + IA+ +GA++ + ES + K V + +E +
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYV-Y 61
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 493
V+K+E + L+ +K G +D +V + A P G ++E ++ ++ E++V
Sbjct: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVY 121
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 550
S LT + P + NG S++ +S +G K + Y+V +K AL + +A DL
Sbjct: 122 SLIELTNTLKPLLN--NGASVLTLSYLGST---KYMAHYNVMGLAKAALESAVRYLAVDL 176
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
+IRVN L+ G +T ++ + + + N P+ + +E+G +L S +
Sbjct: 177 GKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLS 236
Query: 611 SYITGEVI-VAAG 622
S ++GEV V AG
Sbjct: 237 SGVSGEVHFVDAG 249
Score = 83.4 bits (207), Expect = 8e-18
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 15/202 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GK ++ A++ I + IA+ +GA++ + ES + K V + +E +
Sbjct: 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYV-Y 61
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 124
V+K+E + L+ +K G +D +V + A P G ++E ++ ++ E++V
Sbjct: 62 ELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVY 121
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 181
S LT + P + NG S++ +S +G K + Y+V +K AL + +A DL
Sbjct: 122 SLIELTNTLKPLLN--NGASVLTLSYLGST---KYMAHYNVMGLAKAALESAVRYLAVDL 176
Query: 182 ASENIRVNCLAPGITKTKFAAA 203
+IRVN L+ G +T ++
Sbjct: 177 GKHHIRVNALSAGPIRTLASSG 198
Score = 39.9 bits (94), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++K AL + +A DL +IRVN L+ G IRT
Sbjct: 160 LAKAALESAVRYLAVDLGKHHIRVNALSAGPIRT 193
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 117 bits (295), Expect = 3e-29
Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 16/275 (5%)
Query: 357 EWKKEVFSTSTKIMSTAVNASRLAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRK 414
T+ + + GK V+ A+ + + IAK + +GA V ++
Sbjct: 6 HHHMGTLEAQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS 65
Query: 415 ESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA-- 472
E+ K V+ L + K++ V C V+ E +F+ +++G +D +V A +
Sbjct: 66 ET-FKKRVDPLAESLGVKLT-VPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNE 123
Query: 473 -TGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA 531
G V+ + ++ S + + P + NGGSI+ +S G K++
Sbjct: 124 LKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMT--NGGSILTLSYYGAE---KVVPH 178
Query: 532 YSV---SKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVP 588
Y+V K AL K +A DL + IRVN ++ G +T ++ + + N P
Sbjct: 179 YNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSP 238
Query: 589 MGRLAVPDEMGGIVAFLCSDDASYITGEVI-VAAG 622
+ R D++GG +L SD TGE + V G
Sbjct: 239 LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCG 273
Score = 82.3 bits (204), Expect = 2e-17
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 15/208 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
+ GK V+ A+ + + IAK + A+GA V ++ E+ K V+ L + K++ V
Sbjct: 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET-FKKRVDPLAESLGVKLT-V 85
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 124
C V+ E +F+ +++G +D +V A + G V+ + ++
Sbjct: 86 PCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCY 145
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 181
S + + P + NGGSI+ +S G K++ Y+V K AL K +A DL
Sbjct: 146 SFTYIASKAEPLMT--NGGSILTLSYYGAE---KVVPHYNVMGVCKAALEASVKYLAVDL 200
Query: 182 ASENIRVNCLAPGITKTKFAAAKKEVKK 209
+ IRVN ++ G +T ++ +
Sbjct: 201 GKQQIRVNAISAGPVRTLASSGISDFHY 228
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V K AL K +A DL + IRVN ++ G +RT
Sbjct: 184 VCKAALEASVKYLAVDLGKQQIRVNAISAGPVRT 217
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 117 bits (295), Expect = 3e-29
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 15/253 (5%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L GK A++T A+ I + IAK EGA + + + K V + K + V
Sbjct: 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLV-V 76
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 493
C V+ ED + L + E+ +G +DI+V + A P G V++ + +++V
Sbjct: 77 KCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVY 136
Query: 494 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 550
S LT+E+LP + R G+IV +S G K++ Y+V +K AL + +A D+
Sbjct: 137 SLIALTRELLPLMEGR-NGAIVTLSYYGAE---KVVPHYNVMGIAKAALESTVRYLAYDI 192
Query: 551 ASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDA 610
A R+N ++ G KT A ++ E P G+ +++G FLCSD A
Sbjct: 193 AKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWA 252
Query: 611 SYITGEVI-VAAG 622
ITGEV+ V G
Sbjct: 253 RAITGEVVHVDNG 265
Score = 82.3 bits (204), Expect = 2e-17
Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GK A++T A+ I + IAK EGA + + + K V + K + V
Sbjct: 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLV-V 76
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECPENVWDKIFEVNVK 124
C V+ ED + L + E+ +G +DI+V + A P G V++ + +++V
Sbjct: 77 KCDVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVY 136
Query: 125 STFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQDL 181
S LT+E+LP + R G+IV +S G K++ Y+V +K AL + +A D+
Sbjct: 137 SLIALTRELLPLMEGR-NGAIVTLSYYGAE---KVVPHYNVMGIAKAALESTVRYLAYDI 192
Query: 182 ASENIRVNCLAPGITKTKFAAA 203
A R+N ++ G KT A +
Sbjct: 193 AKHGHRINAISAGPVKTLAAYS 214
Score = 39.9 bits (94), Expect = 0.002
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++K AL + +A D+A R+N ++ G ++T
Sbjct: 176 IAKAALESTVRYLAYDIAKHGHRINAISAGPVKT 209
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 115 bits (290), Expect = 7e-29
Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 19/255 (7%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L+GK +VT AS I + IA+ + EGA + + + + + VE + I +
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIV-L 64
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECP--ENVWDKIFEVN 491
C VA+ +F K + D V + P G V E + +++
Sbjct: 65 QCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREG-FKIAHDIS 123
Query: 492 VKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQ 548
S + + + G +++ +S +G + + Y+V +K +L + +A
Sbjct: 124 SYSFVAMAKACRSMLN--PGSALLTLSYLGAE---RAIPNYNVMGLAKASLEANVRYMAN 178
Query: 549 DLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSD 608
+ E +RVN ++ G +T A+ + + + + P+ R +++G AFLCSD
Sbjct: 179 AMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSD 238
Query: 609 DASYITGEVI-VAAG 622
++ I+GEV+ V G
Sbjct: 239 LSAGISGEVVHVDGG 253
Score = 80.7 bits (200), Expect = 6e-17
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L+GK +VT AS I + IA+ + EGA + + + + + VE + I +
Sbjct: 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIV-L 64
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVECP--ENVWDKIFEVN 122
C VA+ +F K + D V + P G V E + +++
Sbjct: 65 QCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREG-FKIAHDIS 123
Query: 123 VKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQ 179
S + + + G +++ +S +G + + Y+V +K +L + +A
Sbjct: 124 SYSFVAMAKACRSMLN--PGSALLTLSYLGAE---RAIPNYNVMGLAKASLEANVRYMAN 178
Query: 180 DLASENIRVNCLAPGITKTKFAAAKKEVKK 209
+ E +RVN ++ G +T A+ K+ +K
Sbjct: 179 AMGPEGVRVNAISAGPIRTLAASGIKDFRK 208
Score = 39.5 bits (93), Expect = 0.002
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++K +L + +A + PE +RVN ++ G IRT
Sbjct: 164 LAKASLEANVRYMANAMGPEGVRVNAISAGPIRT 197
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 114 bits (287), Expect = 3e-28
Identities = 70/275 (25%), Positives = 122/275 (44%), Gaps = 27/275 (9%)
Query: 363 FSTSTKIMSTAVNASRLAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVIS--SRKESNV 418
S+ ++ + LAGK ++T S+ I + IAK + EGA + + + + V
Sbjct: 8 HHHSSGLVPRGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRV 67
Query: 419 NKAVETLQKEGHQKISGVV--CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---T 473
K V C V ++ + LF K + G+D +V + A P
Sbjct: 68 EKLCAEFN-------PAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLE 120
Query: 474 GPVVEC--PENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGA 531
G ++C E + +++ S L +E ++ R S+V ++ IG K + +
Sbjct: 121 GNFIDCVTREG-FSIAHDISAYSFAALAKEGRSMMKNR-NASMVALTYIGAE---KAMPS 175
Query: 532 YSV---SKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVP 588
Y+ +K +L + A L + I+VN ++ G KT A+ + ++ + P
Sbjct: 176 YNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSP 235
Query: 589 MGRLAVPDEMGGIVAFLCSDDASYITGEVI-VAAG 622
+ + E+G VAFLCSD A+ ITGEV+ V AG
Sbjct: 236 LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAG 270
Score = 78.8 bits (195), Expect = 3e-16
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVIS--SRKESNVNKAVETLQKEGHQKIS 65
L GK ++T S+ I + IAK + EGA + + + + V K
Sbjct: 24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN-------P 76
Query: 66 GVV--CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVEC--PENVWDKI 118
V C V ++ + LF K + G+D +V + A P G ++C E +
Sbjct: 77 AAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREG-FSIA 135
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTK 175
+++ S L +E ++ R S+V ++ IG K + +Y+ +K +L +
Sbjct: 136 HDISAYSFAALAKEGRSMMKNR-NASMVALTYIGAE---KAMPSYNTMGVAKASLEATVR 191
Query: 176 AVAQDLASENIRVNCLAPGITKTKFAAA 203
A L + I+VN ++ G KT A+
Sbjct: 192 YTALALGEDGIKVNAVSAGPIKTLAASG 219
Score = 39.9 bits (94), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V+K +L + A L + I+VN ++ G I+T
Sbjct: 181 VAKASLEATVRYTALALGEDGIKVNAVSAGPIKT 214
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 113 bits (285), Expect = 4e-28
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 17/254 (6%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L GK ++T S+ I + IAK EGA + + + + E ++
Sbjct: 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSELV-F 69
Query: 437 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVE-CPENVWDKIFEVNV 492
C VA LF + + +D LV + P G ++ + +++
Sbjct: 70 PCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISA 129
Query: 493 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 549
S L + LP + + S++ +S +G + + Y+ +K AL + +A
Sbjct: 130 YSFPALAKAALPMLS--DDASLLTLSYLGAE---RAIPNYNTMGLAKAALEASVRYLAVS 184
Query: 550 LASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRLAVPDEMGGIVAFLCSDD 609
L ++ +RVN ++ G KT A+ + + + SN P+ R +++G AFL SD
Sbjct: 185 LGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDL 244
Query: 610 ASYITGEVI-VAAG 622
AS +T EV+ V +G
Sbjct: 245 ASGVTAEVMHVDSG 258
Score = 78.0 bits (193), Expect = 5e-16
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 16/209 (7%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GK ++T S+ I + IAK EGA + + + + E ++
Sbjct: 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSELV-F 69
Query: 68 VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPA---TGPVVE-CPENVWDKIFEVNV 123
C VA LF + + +D LV + P G ++ + +++
Sbjct: 70 PCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISA 129
Query: 124 KSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSV---SKTALLGLTKAVAQD 180
S L + LP + + S++ +S +G + + Y+ +K AL + +A
Sbjct: 130 YSFPALAKAALPMLS--DDASLLTLSYLGAE---RAIPNYNTMGLAKAALEASVRYLAVS 184
Query: 181 LASENIRVNCLAPGITKTKFAAAKKEVKK 209
L ++ +RVN ++ G KT A+ K K
Sbjct: 185 LGAKGVRVNAISAGPIKTLAASGIKSFGK 213
Score = 39.5 bits (93), Expect = 0.002
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
++K AL + +A L + +RVN ++ G I+T
Sbjct: 169 LAKAALEASVRYLAVSLGAKGVRVNAISAGPIKT 202
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 105 bits (264), Expect = 4e-25
Identities = 71/285 (24%), Positives = 111/285 (38%), Gaps = 47/285 (16%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVIS------------------------S 412
L GK A + A +G G+A+AK L+ GA +++
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 65
Query: 413 RKESNVNKAVETLQKEGHQKISGVVCHV--------AKKEDRQKLFEHAEKKFGGIDILV 464
K V L V V + Q+ E + FG IDILV
Sbjct: 66 DGSLMEIKKVYPLDAVFDNPED-VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILV 124
Query: 465 -SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL 523
S A + P++E + + S L LP + GG+ + ++ I
Sbjct: 125 HSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMN--PGGASISLTYIASE 182
Query: 524 APFKLLGAY----SVSKTALLGLTKAVAQDL-ASENIRVNCLAPGITKTKFAAALYETEE 578
+++ Y S +K AL T+ +A + +NIRVN ++ G ++ A A+ +
Sbjct: 183 ---RIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGFIDT 239
Query: 579 AHEIAVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI-VAAG 622
E + +N P+ + DE+G AFL S AS ITG I V G
Sbjct: 240 MIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284
Score = 70.9 bits (174), Expect = 2e-13
Identities = 54/234 (23%), Positives = 87/234 (37%), Gaps = 46/234 (19%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVIS------------------------S 43
L GK A + A +G G+A+AK L+A GA +++
Sbjct: 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLP 65
Query: 44 RKESNVNKAVETLQKEGHQKISGVVCHV--------AKKEDRQKLFEHAEKKFGGIDILV 95
K V L V V + Q+ E + FG IDILV
Sbjct: 66 DGSLMEIKKVYPLDAVFDNPED-VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILV 124
Query: 96 -SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGL 154
S A + P++E + + S L LP + GG+ + ++ I
Sbjct: 125 HSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIM--NPGGASISLTYIASE 182
Query: 155 APFKLLGAY----SVSKTALLGLTKAVAQDL-ASENIRVNCLAPGITKTKFAAA 203
+++ Y S +K AL T+ +A + +NIRVN ++ G ++ A A
Sbjct: 183 ---RIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA 233
Score = 35.8 bits (83), Expect = 0.045
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 642 SVSKTALFGLTKVVAEDLAP-ENIRVNCLAPGLIRT 676
S +K AL T+V+A + +NIRVN ++ G + +
Sbjct: 193 SSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 102 bits (257), Expect = 2e-24
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 38/271 (14%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGV 436
L GK +V+ + I F IA+ +GA +V++ + ++ + K +
Sbjct: 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL---RLIQRITDRLPAKAPLL 61
Query: 437 VCHVAKKEDRQKLFEHAEKKFG---GIDILVSNAAVNPA----TGPVVECPENVWDKIFE 489
V +E L + G +D +V + P P + P K
Sbjct: 62 ELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIH 121
Query: 490 VNVKSTFLLTQEVLPYIRKRNGGSIV---YVSSIGGLAPFKLLGAYSV---SKTALLGLT 543
++ S + + +LP + GGSIV + S + + AY+ +K+AL +
Sbjct: 122 ISAYSYASMAKALLPIMN--PGGSIVGMDFDPS-------RAMPAYNWMTVAKSALESVN 172
Query: 544 KAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAH----------EIAVSNVPMGR-L 592
+ VA++ +R N +A G +T +A+ E P+G +
Sbjct: 173 RFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNM 232
Query: 593 AVPDEMGGIVAFLCSDDASYITGEVIVAAGG 623
+ V L SD TG++I A GG
Sbjct: 233 KDATPVAKTVCALLSDWLPATTGDIIYADGG 263
Score = 76.9 bits (190), Expect = 1e-15
Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 28/209 (13%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGV 67
L GK +V+ + I F IA+ +GA +V++ + ++ + K +
Sbjct: 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL---RLIQRITDRLPAKAPLL 61
Query: 68 VCHVAKKEDRQKLFEHAEKKFG---GIDILVSNAAVNPA----TGPVVECPENVWDKIFE 120
V +E L + G +D +V + P P + P K
Sbjct: 62 ELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIH 121
Query: 121 VNVKSTFLLTQEVLPYIRKRNGGSIV---YVSSIGGLAPFKLLGAYSV---SKTALLGLT 174
++ S + + +LP + GGSIV + S + + AY+ +K+AL +
Sbjct: 122 ISAYSYASMAKALLPIMN--PGGSIVGMDFDPS-------RAMPAYNWMTVAKSALESVN 172
Query: 175 KAVAQDLASENIRVNCLAPGITKTKFAAA 203
+ VA++ +R N +A G +T A +
Sbjct: 173 RFVAREAGKYGVRSNLVAAGPIRT-LAMS 200
Score = 40.3 bits (95), Expect = 0.002
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 643 VSKTALFGLTKVVAEDLAPENIRVNCLAPGLIRT 676
V+K+AL + + VA + +R N +A G IRT
Sbjct: 163 VAKSALESVNRFVAREAGKYGVRSNLVAAGPIRT 196
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 102 bits (256), Expect = 5e-24
Identities = 67/290 (23%), Positives = 118/290 (40%), Gaps = 51/290 (17%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVIS-------SRKESNVNKAVETLQKEG 429
L G+ A V A S G G+AIAK L++ GA V + ++S + ++ +K
Sbjct: 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLP 66
Query: 430 HQKISGVV----------------CHVAKKEDR--------QKLFEHAEKKFGGIDILV- 464
+ + + +++ ++ G IDILV
Sbjct: 67 DGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVH 126
Query: 465 SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLA 524
S A T P++E + + S L Q P + GGS V +S +
Sbjct: 127 SLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIMN--EGGSAVTLSYLAAE- 183
Query: 525 PFKLLGAY----SVSKTALLGLTKAVAQDLASE-NIRVNCLAPGITKTKFAAALYETEEA 579
+++ Y S +K AL T+ +A + + +RVN ++ G K++ A+A+ ++ E
Sbjct: 184 --RVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEK 241
Query: 580 HEI------AVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI-VAAG 622
I + +N P+ R D++GG FL S A ++G + V G
Sbjct: 242 SFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291
Score = 75.6 bits (186), Expect = 6e-15
Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 44/255 (17%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVIS-------SRKESNVNKAVETLQKEG 60
L G+ A V A S G G+AIAK L++ GA V + ++S + ++ +K
Sbjct: 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLP 66
Query: 61 HQKISGVV----------------CHVAKKEDR--------QKLFEHAEKKFGGIDILV- 95
+ + + +++ ++ G IDILV
Sbjct: 67 DGSLIEFAGVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVH 126
Query: 96 SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLA 155
S A T P++E + + S L Q P + GGS V +S +
Sbjct: 127 SLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIMN--EGGSAVTLSYLAAE- 183
Query: 156 PFKLLGAY----SVSKTALLGLTKAVAQDLASE-NIRVNCLAPGITKTKFAAAKKEVKKK 210
+++ Y S +K AL T+ +A + + +RVN ++ G K++ A+A + +K
Sbjct: 184 --RVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGKSGEK 241
Query: 211 ETNDEPIVYTSNTAP 225
D I Y+ N AP
Sbjct: 242 SFIDYAIDYSYNNAP 256
Score = 35.9 bits (83), Expect = 0.036
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 642 SVSKTALFGLTKVVAEDLAPE-NIRVNCLAPGLIRT 676
S +K AL T+ +A + + +RVN ++ G +++
Sbjct: 194 SSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 98.0 bits (244), Expect = 2e-22
Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 64/303 (21%)
Query: 379 LAGKVAVVT--ASSDGIGFAIAKRLSTEGASVVIS----------------------SRK 414
L GK A V A S+G G+AI K L GA V++
Sbjct: 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYA 66
Query: 415 ESNVNKAVETLQKEGHQKISGVV--------------CHVAKKEDR--------QKLFEH 452
+ +K ++ + + V+ + ++ E
Sbjct: 67 QEPSSKVAAEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEA 126
Query: 453 AEKKFGGIDILV-SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNG 511
G IDILV S A T P+++ + + S L Q LP ++ G
Sbjct: 127 VRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMK--EG 184
Query: 512 GSIVYVSSIGGLAPFKLLGAY----SVSKTALLGLTKAVAQDL-ASENIRVNCLAPGITK 566
GS + +S I K++ Y S +K AL + +A + + +RVNC++ G K
Sbjct: 185 GSALALSYIASE---KVIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLK 241
Query: 567 TKFAAALYETEEAHEI------AVSNVPMGRLAVPDEMGGIVAFLCSDDASYITGEVI-V 619
++ A+A+ + + I + +N P+ + D++G FL S A +TG + V
Sbjct: 242 SRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYV 301
Query: 620 AAG 622
G
Sbjct: 302 DNG 304
Score = 71.8 bits (176), Expect = 1e-13
Identities = 61/268 (22%), Positives = 99/268 (36%), Gaps = 57/268 (21%)
Query: 10 LTGKVAVVT--ASSDGIGFAIAKRLSAEGASVVIS----------------------SRK 45
L GK A V A S+G G+AI K L A GA V++
Sbjct: 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYA 66
Query: 46 ESNVNKAVETLQKEGHQKISGVV--------------CHVAKKEDR--------QKLFEH 83
+ +K ++ + + V+ + ++ E
Sbjct: 67 QEPSSKVAAEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEA 126
Query: 84 AEKKFGGIDILV-SNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNG 142
G IDILV S A T P+++ + + S L Q LP ++ G
Sbjct: 127 VRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSYSFVSLLQHFLPLMK--EG 184
Query: 143 GSIVYVSSIGGLAPFKLLGAY----SVSKTALLGLTKAVAQDL-ASENIRVNCLAPGITK 197
GS + +S I K++ Y S +K AL + +A + + +RVNC++ G K
Sbjct: 185 GSALALSYIASE---KVIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLK 241
Query: 198 TKFAAAKKEVKKKETNDEPIVYTSNTAP 225
++ A+A + K D I Y+ AP
Sbjct: 242 SRAASAIGKAGDKTFIDLAIDYSEANAP 269
Score = 36.7 bits (85), Expect = 0.020
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 642 SVSKTALFGLTKVVAEDL-APENIRVNCLAPGLIRT 676
S +K AL + +A + +RVNC++ G +++
Sbjct: 207 SSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKS 242
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 99.7 bits (248), Expect = 1e-21
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 237 SSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALT 296
+ + + +E W W + F+ +I +K + KF + + P ++G LH+GHA T
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFE-----PNIRDKPKEKKFYITVAFPYLSGHLHVGHART 56
Query: 297 NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 356
+ D I R+ RM+G L+ G + E ++ + KT + +
Sbjct: 57 YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAE-RIKNRDPKTIWIYRDVYKVPEEI 115
Query: 357 EWKKE 361
W E
Sbjct: 116 LWTFE 120
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 94.6 bits (235), Expect = 4e-20
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 237 SSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALT 296
+ + + +E W W + F+ +I +K + KF + + P ++G LH+GHA T
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFE-----PNIRDKPKEKKFYITVAFPYLSGHLHVGHART 56
Query: 297 NAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIGREKFIEKVW 356
+ D I R+ RM+G L+ G + E ++ + KT + +
Sbjct: 57 YTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAE-RIKNRDPKTIWIYRDVYKVPEEI 115
Query: 357 EWKKE 361
W E
Sbjct: 116 LWTFE 120
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 87.3 bits (216), Expect = 9e-19
Identities = 47/321 (14%), Positives = 101/321 (31%), Gaps = 89/321 (27%)
Query: 381 GKVAVVT--ASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQK------ 432
+ + ++G G+ IAK LS ++ N ++ +
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV-YNIFMKNYKNGKFDNDMIIDK 60
Query: 433 --------------------------ISGVVCHVAKKEDRQKLFEHAEKKFGGIDILV-S 465
+ ++ + + + +K+G I++LV S
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHS 120
Query: 466 NAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAP 525
A ++ + + S L + + + + SI+ ++
Sbjct: 121 LANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM--KPQSSIISLTYHASQ-- 176
Query: 526 FKLLGAY----SVSKTALLGLTKAVAQDLASE-NIRVNCLAPGITKTKFAAAL------- 573
K++ Y S +K AL T+ +A L NIR+N ++ G K++ A A+
Sbjct: 177 -KVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKLNNTY 235
Query: 574 ------------------------------------YETEEAHEIAVSNVPMGRLAVPDE 597
+ A E + P+ + + +
Sbjct: 236 ENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTD 295
Query: 598 MGGIVAFLCSDDASYITGEVI 618
+G + +FL S ++ ITG+ I
Sbjct: 296 IGSVASFLLSRESRAITGQTI 316
Score = 71.1 bits (174), Expect = 2e-13
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 46/232 (19%)
Query: 12 GKVAVVT--ASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQK------ 63
+ + ++G G+ IAK LS ++ N ++ +
Sbjct: 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV-YNIFMKNYKNGKFDNDMIIDK 60
Query: 64 --------------------------ISGVVCHVAKKEDRQKLFEHAEKKFGGIDILV-S 96
+ ++ + + + +K+G I++LV S
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHS 120
Query: 97 NAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAP 156
A ++ + + S L + + + + SI+ ++
Sbjct: 121 LANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM--KPQSSIISLTYHASQ-- 176
Query: 157 FKLLGAY----SVSKTALLGLTKAVAQDLASE-NIRVNCLAPGITKTKFAAA 203
K++ Y S +K AL T+ +A L NIR+N ++ G K++ A A
Sbjct: 177 -KVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATA 227
Score = 35.6 bits (82), Expect = 0.043
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 642 SVSKTALFGLTKVVAEDLAPE-NIRVNCLAPGLIRT 676
S +K AL T+V+A L NIR+N ++ G +++
Sbjct: 187 SSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 85.4 bits (212), Expect = 2e-18
Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 38/215 (17%)
Query: 3 TAVNASRLTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ 62
TA + + V+T ++ G+G A+ L+ GA+V+++ R + K +
Sbjct: 7 TAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVR---DTRKGEAAAR-TMAG 62
Query: 63 KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV----WDKI 118
++ + D + A+ G D+L++NA ++ P + ++
Sbjct: 63 QVEVRELDLQ---DLSSVRRFAD-GVSGADVLINNAG-------IMAVPYALTVDGFESQ 111
Query: 119 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIG-------------GLAPFKLLGAYSV 165
N F LT +LP + R +V VSS+ + AYS
Sbjct: 112 IGTNHLGHFALTNLLLPRLTDR----VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQ 167
Query: 166 SKTALLGLTKAVAQDLASE--NIRVNCLAPGITKT 198
SK A L T + + L + +R PG + T
Sbjct: 168 SKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHT 202
Score = 82.7 bits (205), Expect = 2e-17
Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 372 TAVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ 431
TA + A + V+T ++ G+G A+ L+ GA+V+++ R + K +
Sbjct: 7 TAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVR---DTRKGEAAAR-TMAG 62
Query: 432 KISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENV----WDKI 487
++ + D + A+ G D+L++NA ++ P + ++
Sbjct: 63 QVEVRELDLQ---DLSSVRRFAD-GVSGADVLINNAG-------IMAVPYALTVDGFESQ 111
Query: 488 FEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIG-------------GLAPFKLLGAYSV 534
N F LT +LP + R +V VSS+ + AYS
Sbjct: 112 IGTNHLGHFALTNLLLPRLTDR----VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQ 167
Query: 535 SKTALLGLTKAVAQDLASE--NIRVNCLAPGITKT 567
SK A L T + + L + +R PG + T
Sbjct: 168 SKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHT 202
Score = 29.5 bits (67), Expect = 4.0
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 639 GAYSVSKTA--LFG--LTKVVAEDLAPENIRVNCLAPGLIRT 676
AYS SK A LF L + + A +R PG T
Sbjct: 163 LAYSQSKLANLLFTSELQRRLTA--AGSPLRALAAHPGYSHT 202
Score = 28.4 bits (64), Expect = 10.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 692 YGGIDILVSNAAVNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPYMRKKKGGSIVY 751
G D+L++NA + P + ++ N F LT +LP + +V
Sbjct: 84 VSGADVLINNAGI--MAVPYAL-TVDGFESQIGTNHLGHFALTNLLLPRLT----DRVVT 136
Query: 752 VSSIG 756
VSS+
Sbjct: 137 VSSMA 141
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 66.8 bits (163), Expect = 4e-12
Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 22/171 (12%)
Query: 10 LTGKVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVC 69
+ GK AVV A + +G A L+ EGA VV+ RK A +++ K K++
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--KVNVTAA 174
Query: 70 HVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLL 129
A R + + A + + A + P+ W + + + +
Sbjct: 175 ETADDASRAEAVKGA-------HFVFTAGA-----IGLELLPQAAWQNESSIEIVADY-- 220
Query: 130 TQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG----AYSVSKTALLGLTKA 176
P + + GG F LG + + + L ++
Sbjct: 221 --NAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIAKLFES 269
Score = 65.7 bits (160), Expect = 9e-12
Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 24/189 (12%)
Query: 363 FSTSTKIMSTAVNASR--LAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNK 420
+T+ ++ V A+ + GK AVV A + +G A L+ EGA VV+ RK
Sbjct: 99 NTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA 158
Query: 421 AVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECP 480
A +++ K K++ A R + + A + + A + P
Sbjct: 159 AADSVNKRF--KVNVTAAETADDASRAEAVKGA-------HFVFTAGA-----IGLELLP 204
Query: 481 ENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLG----AYSVSK 536
+ W + + + + P + + GG F LG + +
Sbjct: 205 QAAWQNESSIEIVADY----NAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHR 260
Query: 537 TALLGLTKA 545
+ L ++
Sbjct: 261 ACIAKLFES 269
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 67.2 bits (165), Expect = 1e-11
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 237 SSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKFVMVIPPPNVTGTLHLGHALT 296
+ +E +W+++ F+ KS+ + ++ + PP G H+GHA
Sbjct: 6 GEPNFPKLEEEVLAFWKREKIFQ-----KSVENRKGGPRYTVYEGPPTANGLPHVGHAQA 60
Query: 297 NAVEDSITRWNRMKGKTTLWNPGCD-HAGIATQVVVEKKLWREEKKTRHEIGREKFIEK- 354
+ +D R+ M+G G D H G+ ++ VEKKL + K+ G E+F +
Sbjct: 61 RSYKDLFPRYKTMRGYYAPRRAGWDTH-GLPVELEVEKKLGLKSKREIEAYGIERFNQAC 119
Query: 355 ---VWEWKKE 361
V+ ++KE
Sbjct: 120 RESVFTYEKE 129
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 58.6 bits (141), Expect = 3e-09
Identities = 49/336 (14%), Positives = 92/336 (27%), Gaps = 63/336 (18%)
Query: 342 TRHEIGREKFIEKVWEWKKEVFSTSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRL 401
T H +G E+ + + + A K +V +S G G A
Sbjct: 34 TTHPLGCERNVLEQIAATR------------ARGVRNDGPKKVLVIGASSGYGLASRITA 81
Query: 402 S-TEGASVVISSR----KESNVNKAVETLQKEGHQ--KISGVVCH-----VAKKEDRQKL 449
+ GA + S A + K +G+ R ++
Sbjct: 82 AFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQV 141
Query: 450 FEHAEKKFGG-IDILVSNAA----VNPATGPVVECPENVWDKIFE---VNVKSTFLLTQE 501
E + + GG +D++V + A P +G V + + ++ ++
Sbjct: 142 IELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQAS 201
Query: 502 VLPYIRK---------------------------RNGGSIVYVSSIGG--LAPFKLLGAY 532
+ P + +G V S IG P GA
Sbjct: 202 IEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGAL 261
Query: 533 SVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNVPMGRL 592
+K L + + LA N T+ +AA+ + M
Sbjct: 262 GKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQASAAIPVMPLYISMVYK--IMKEK 319
Query: 593 AVPDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRL 628
+ + + L + G+ + RL
Sbjct: 320 GLHEGTIEQLDRLFRERLYRQDGQPAEVDEQNRLRL 355
Score = 49.0 bits (116), Expect = 4e-06
Identities = 39/266 (14%), Positives = 75/266 (28%), Gaps = 59/266 (22%)
Query: 12 GKVAVVTASSDGIGFAIAKRLS-AEGASVVISSR----KESNVNKAVETLQKEGHQ--KI 64
K +V +S G G A + GA + S A + K
Sbjct: 61 PKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA 120
Query: 65 SGVVCH-----VAKKEDRQKLFEHAEKKFGG-IDILVSNAA----VNPATGPVVECPENV 114
+G+ R ++ E + + GG +D++V + A P +G V
Sbjct: 121 AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKP 180
Query: 115 WDKIFE---VNVKSTFLLTQEVLPYIRK---------------------------RNGGS 144
+ + ++ ++ + P + +G
Sbjct: 181 IGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGAR 240
Query: 145 IVYVSSIGG--LAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTK--- 199
V S IG P GA +K L + + LA N T+
Sbjct: 241 SVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQASA 300
Query: 200 -------FAAAKKEVKKKETNDEPIV 218
+ + ++ K++ E +
Sbjct: 301 AIPVMPLYISMVYKIMKEKGLHEGTI 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 9e-09
Identities = 71/464 (15%), Positives = 133/464 (28%), Gaps = 148/464 (31%)
Query: 11 TGK--VAVVTASSDGI----GFAIAKRLSAEGASVVISSRKESNVNKAVETLQ------- 57
+GK VA+ S + F I ++ + ++ +E LQ
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF----------WLNLKNCNSPETVLEMLQKLLYQID 210
Query: 58 KEGHQKISG-----VVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPE 112
+ + H + E R+ L + + +L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVL-----------------L 251
Query: 113 NVWD-KIFEV-NVKSTFLLT---QEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSK 167
NV + K + N+ LLT ++V ++ I L P ++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--- 308
Query: 168 TALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAAKKEVKK-----KETNDEPIVYTSN 222
L QDL E + N I A + ++ K N + +
Sbjct: 309 -KYLDCR---PQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWKHVNCDKL----T 356
Query: 223 TAPGEMKDVLGPL-PSSYSPQYVEAAWYP-------------WWEK----QGFFKPEYGR 264
T ++ L L P+ Y + + +P W++ + +
Sbjct: 357 TI---IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 265 KSIGEKNPKGKFVMVIP------------------------------------PPNVTGT 288
S+ EK PK + + IP PP +
Sbjct: 414 YSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 289 L--HLGHALTNA-VEDSIT---------RW--NRMKGKTTLWNPGCDHAGIATQVVVEKK 334
H+GH L N + +T R+ +++ +T WN Q+ K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 335 LWREEKKTRHEIGR--EKFIEKVWEWKKEVFSTSTKIMSTAVNA 376
+ + F+ K+ E + S T ++ A+ A
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEE--NLICSKYTDLLRIALMA 574
Score = 42.5 bits (99), Expect = 5e-04
Identities = 57/385 (14%), Positives = 120/385 (31%), Gaps = 118/385 (30%)
Query: 444 EDRQK-LFEHAEKKFGGIDILVSNAAVNPATGPVVEC----PENVWDKIFEVNVKS--TF 496
+D K + E I++S AV+ T + E + K E ++ F
Sbjct: 39 QDMPKSILSKEEID----HIIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 497 LLTQEVLPYIRKRN----GGSIVYVSSIGGL----APFKLLGAYSVSKT-ALLGLTKAVA 547
L++ I+ + +Y+ L F Y+VS+ L L +A+
Sbjct: 94 LMSP-----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVSRLQPYLKLRQALL 145
Query: 548 QDLASENIRVNCLAPGITKTKFAAALYETEEAHEIAVSNV---PMGRLAVPDEMGGIVAF 604
+ ++N+ ++ + G KT A + + + + + P+ + ++
Sbjct: 146 ELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 605 LCSD-DASYITG-----------------------------------EV----IVAAGGM 624
L D ++ + V A +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 625 QSRL---TKSTVEFRFIGAYSVSKTAL----FGLT---------KVV---AEDLAPENIR 665
++ T+ F+ A + + +L LT K + +DL E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 666 VNCLAPGLIRTKFGDRMIAMLST---------DKLYGGIDILVSNAAVNPANEPLVECSE 716
N +I + + L+T DKL I+ S + PA E +
Sbjct: 325 TNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPA-----EYRK 373
Query: 717 VVWD-KIF--DVNLKSSFLLTQEVL 738
+ +F ++ + L ++
Sbjct: 374 MFDRLSVFPPSAHIPTILL---SLI 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 2e-07
Identities = 51/257 (19%), Positives = 80/257 (31%), Gaps = 114/257 (44%)
Query: 440 VAKKEDRQKLFEHAEKKFG---GIDIL--VSNAAVNPATGPVVECP-------------- 480
A+ ++ A+ F G IL V N NP +
Sbjct: 1641 AAQD-----VWNRADNHFKDTYGFSILDIVIN---NPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 481 -ENVWD------KIF-EVNVKS---TF-----LL-----TQ------EVLPY--IRKRNG 511
E + D KIF E+N S TF LL TQ E + ++ +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-- 1750
Query: 512 GSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASEN------IRVNCLAPGIT 565
G I ++ G + LG Y+ AL ++A ++ E+ R G+
Sbjct: 1751 GLIPADATFAGHS----LGEYA----ALA----SLADVMSIESLVEVVFYR------GM- 1791
Query: 566 KTKFAAALYETEEAHEIAVSNVPMGRLAV-PDEMGGIVAFLCSDDASYI-------TGEV 617
+ E+ SN M +A+ P + A + Y+ TG +
Sbjct: 1792 ------TMQVAVPRDELGRSNYGM--IAINPGRV---AASFSQEALQYVVERVGKRTGWL 1840
Query: 618 ------------IVAAG 622
VAAG
Sbjct: 1841 VEIVNYNVENQQYVAAG 1857
Score = 47.4 bits (112), Expect = 2e-05
Identities = 58/277 (20%), Positives = 88/277 (31%), Gaps = 119/277 (42%)
Query: 71 VAKKEDRQKLFEHAEKKFG---GIDIL--VSNAAVNPATGPVVECP-------------- 111
A+ ++ A+ F G IL V N NP +
Sbjct: 1641 AAQD-----VWNRADNHFKDTYGFSILDIVIN---NPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 112 -ENVWD------KIF-EVNVKS---TF-----LL-----TQ------EVLPY--IRKRNG 142
E + D KIF E+N S TF LL TQ E + ++ +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-- 1750
Query: 143 GSIVYVSSIGGLAPFKLLGAYSVSKTAL--------------L----GLT--KAVAQD-L 181
G I ++ G + LG Y+ AL + G+T AV +D L
Sbjct: 1751 GLIPADATFAGHS----LGEYA----ALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 182 ASENIRVNCLAPGITKTKF--AAAKKEVKK--KETND--EPIV-YTSNTAP------GEM 228
N + + PG F A + V++ K T E IV Y N G++
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-IVNY--NVENQQYVAAGDL 1859
Query: 229 KDV----------------LGPLPSSYSPQYVEAAWY 249
+ + + L S S + VE +
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 45.4 bits (107), Expect = 8e-05
Identities = 67/415 (16%), Positives = 119/415 (28%), Gaps = 185/415 (44%)
Query: 383 VAVVTASSDGIGFAIAKRLSTEGASVVISSRKE--SNVNKAVETLQKEGHQKISGVVCHV 440
AV A +D S + +V KA+ L GV C+
Sbjct: 279 TAVAIAETD--------------------SWESFFVSVRKAITVL------FFIGVRCYE 312
Query: 441 AKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQ 500
A N ++ P+ + + EN
Sbjct: 313 A----------------------YPNTSLPPSI--LEDSLEN-----------------N 331
Query: 501 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCL 560
E +P +P +L S+S LT+ QD + + N
Sbjct: 332 EGVP-------------------SP--ML---SIS-----NLTQEQVQDYVN---KTNSH 359
Query: 561 APGITKTKFAAALYETEEAH-EIAVSNVPMGRLAV----PDEMGGIVAFLCSDDASYITG 615
P EI++ N + V P + G+ L A
Sbjct: 360 LP--------------AGKQVEISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKAP---- 399
Query: 616 EVIVAAGGMQSRLT----KSTVEFRF--IGA-----YSVSKTALFGLTKVVAEDLAPENI 664
+G QSR+ K RF + + L + ++ +DL N+
Sbjct: 400 -----SGLDQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASDLINKDLVKNNV 448
Query: 665 RVNCLAPGLIRTKFGDRMIAMLSTDKLYGGIDILVSNAAVNPANEPLVEC---SEVVWDK 721
N A + I + T + G D+ V + +++ +V+C V W+
Sbjct: 449 SFN--AKDI--------QIPVYDT---FDGSDLRVLSGSISER---IVDCIIRLPVKWET 492
Query: 722 IFDVNLKSSFLL------TQEVLPYMRKKKGGS---IVYVSSIG-------GFKQ 760
K++ +L + + K G+ ++ ++ GFKQ
Sbjct: 493 T--TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 43.1 bits (101), Expect = 4e-04
Identities = 59/324 (18%), Positives = 105/324 (32%), Gaps = 107/324 (33%)
Query: 14 VAVVTASSD-------------GIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
AV A +D + F I R E +S S + ++E
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPN--TSLPPSILEDSLE----NN 331
Query: 61 HQK------ISGVVCHVAKKEDRQKLFEHAEK--KFGGIDILVSNAAVNPA-----TGPV 107
IS + ++++ ++ K V + VN A +GP
Sbjct: 332 EGVPSPMLSISNL--------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP- 382
Query: 108 VECPENVW--DKIFEVNVKSTFLLTQEVLPYIRKRNGGSIVY--VSSIGGLAPF--KLLG 161
P++++ + K+ L Q +P+ ++ S + V+ +PF LL
Sbjct: 383 ---PQSLYGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVA-----SPFHSHLL- 432
Query: 162 AYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAAKKEVKKKETNDEPIVYTS 221
A + + +DL N+ F A K+++ P VY
Sbjct: 433 -----VPA----SDLINKDLVKNNV------------SFNA--KDIQ------IP-VY-- 460
Query: 222 NTAPGE-MKDVLGPLPSSYSPQYVEAAWYPWWEKQGFFKP----EYGR---KSIG---EK 270
+T G ++ + G + + WE FK ++G +G +
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVK--WETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 271 NPKGKFVMVIPPPNVTGTLHLGHA 294
N G V VI V GTL +
Sbjct: 519 NKDGTGVRVI----VAGTLDINPD 538
Score = 42.7 bits (100), Expect = 5e-04
Identities = 47/296 (15%), Positives = 88/296 (29%), Gaps = 84/296 (28%)
Query: 512 GSIVYVSSIGGLAPFKLLGAYSVSK----TALLGLTKAVAQD--------LASENI---- 555
GS+ + + L P S + L T+ A D L + +
Sbjct: 14 GSLEH--VL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 556 -RVNCLAPGITKTKFAAALYETEEA-------HEIAVSNVPMGRLAVPDEMGGIVAFLCS 607
V G L E E H +A + + I ++
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-- 127
Query: 608 DDASYITGEVIVAAGGMQSRLTKS---------TV------------EFRFIGAYSVSKT 646
A + S L ++ + E R + Y
Sbjct: 128 -TARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHV 182
Query: 647 ALFGLTKVVAEDLAPENIRVNCLAPGLIRTKFGDRMIAMLSTDKLYG-GIDIL--VSNAA 703
+ L K AE L+ LIRT L +K++ G++IL + N +
Sbjct: 183 LVGDLIKFSAETLSE-----------LIRTT--------LDAEKVFTQGLNILEWLENPS 223
Query: 704 VNPANEPLVECSEVVWDKIFDVNLKSSFLLTQEVLPY----MRKKKGGSIVYVSSI 755
P + L+ + I + L + +++T ++L + +R G+ + +
Sbjct: 224 NTPDKDYLLSI-PISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Score = 42.0 bits (98), Expect = 0.001
Identities = 47/311 (15%), Positives = 83/311 (26%), Gaps = 102/311 (32%)
Query: 306 WNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKTRHEIG------REKFIEKVWE-- 357
WNR D G + +V T H G RE + ++E
Sbjct: 1646 WNRADNHFK------DTYGFSILDIVINN---PVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 358 -----WKKEVFS----TSTKIM---------STAVNASRLAGKVAVVTASSDGIGFAIAK 399
+++F ST +T A+ A +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQ-----PALTLME-----KAAFE 1745
Query: 400 RLSTEGASVVISSRKESNVNKAVETLQKEGHQKIS-----------GV-----VCHVAKK 443
L ++G ++ A GH S V + V
Sbjct: 1746 DLKSKGL-------IPADATFA-------GH---SLGEYAALASLADVMSIESLVEVVFY 1788
Query: 444 EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVL 503
R + A + A+NP E + + V ++ +L+ E++
Sbjct: 1789 --RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIV 1844
Query: 504 PYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPG 563
Y N + YV G AL +T V + + I + L
Sbjct: 1845 NY----NVENQQYV--AAG------------DLRALDTVTN-VLNFIKLQKIDIIELQKS 1885
Query: 564 ITKTKFAAALY 574
++ + L+
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 35.8 bits (82), Expect = 0.076
Identities = 29/191 (15%), Positives = 52/191 (27%), Gaps = 61/191 (31%)
Query: 14 VAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKIS-------- 65
A+ A + L ++G ++ A GH S
Sbjct: 1734 PALTLME-----KAAFEDLKSKGL-------IPADATFA-------GH---SLGEYAALA 1771
Query: 66 ---GV-----VCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDK 117
V + V R + A + A+NP E +
Sbjct: 1772 SLADVMSIESLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 118 IFEVNVKSTFLLTQEVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 177
+ V ++ +L+ E++ Y N + YV G AL +T V
Sbjct: 1830 VERVGKRTGWLV--EIVNY----NVENQQYV--AAG------------DLRALDTVTN-V 1868
Query: 178 AQDLASENIRV 188
+ + I +
Sbjct: 1869 LNFIKLQKIDI 1879
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 47.6 bits (113), Expect = 2e-05
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 378 RLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVI-SSRKESNVNKAVETLQKEGHQKISG 435
K ++T A IG + + L GA VV+ +SR V +++ + K S
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 436 --VV-CHVAKKEDRQKLFEH--AEKKFGG----IDILVSNAAVNPATG 474
VV + K+D + L E +K GG +D ++ AA+ P G
Sbjct: 533 LIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAI-PEQG 579
Score = 47.2 bits (112), Expect = 2e-05
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 9 RLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVI-SSRKESNVNKAVETLQKEGHQKISG 66
K ++T A IG + + L GA VV+ +SR V +++ + K S
Sbjct: 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 67 --VV-CHVAKKEDRQKLFEH--AEKKFGG----IDILVSNAAVNPATG 105
VV + K+D + L E +K GG +D ++ AA+ P G
Sbjct: 533 LIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAI-PEQG 579
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 46.8 bits (112), Expect = 3e-05
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 237 SSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKF---VMVIPPPNVTGTLHLGH 293
Y P+ +E+ W+++ F+ E K K+ M +P P +G LH+GH
Sbjct: 23 EQYRPEEIESKVQLHWDEKRTFEVT-------EDESKEKYYCLSM-LPYP--SGRLHMGH 72
Query: 294 ALTNAVEDSITRWNRMKGK 312
+ D I R+ RM GK
Sbjct: 73 VRNYTIGDVIARYQRMLGK 91
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 46.8 bits (112), Expect = 3e-05
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 237 SSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKF---VMVIPPPNVTGTLHLGH 293
Y+P +EA W +WE++GF K+ +GK VM P P +G LH+GH
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFM------KAKDLPGGRGKQYVLVM-FPYP--SGDLHMGH 52
Query: 294 ALTNAVEDSITRWNRMKGK 312
+ D + R+ RM+G
Sbjct: 53 LKNYTMGDVLARFRRMQGY 71
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 42.6 bits (101), Expect = 4e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 33/103 (32%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
V HLGHA T V D + RW+R+ G T + G D H AG + V+
Sbjct: 14 VNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDR 73
Query: 333 -----KKLWR-------------EEKKTRHEIGREKFIEKVWE 357
K+ W EE RH+ + ++KV+E
Sbjct: 74 VSGRFKRAWDLLGIAYDDFIRTTEE---RHKKVVQLVLKKVYE 113
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 42.4 bits (99), Expect = 4e-04
Identities = 34/281 (12%), Positives = 70/281 (24%), Gaps = 61/281 (21%)
Query: 342 TRHEIGREKFIEKVWEWKKEVFSTSTKIMSTAVNASRLAGKVAVVTASSDGIGFAIAKRL 401
T H G E ++K ++ K +V +S G G A
Sbjct: 20 TAHPTGCEANVKKQIDYVT------------TEGPIANGPKRVLVIGASTGYGLAARITA 67
Query: 402 ST-EGASVVISSRKESNVNKAVET------LQKEGHQKISGVVCH-----VAKKEDRQKL 449
+ GA + + T G+ E +Q
Sbjct: 68 AFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLT 127
Query: 450 FEHAEKKFGGIDILVSNAA----VNPATGPVVECPENVWDKIFE---VNVKSTFLLTQEV 502
+ ++ G +D ++ + A +P TG V ++ + +
Sbjct: 128 IDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVL 187
Query: 503 LPYIRKR---------------------------NGGSIVYVSSIGGLA--PFKLLGAYS 533
P + G + +G G+
Sbjct: 188 QPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIG 247
Query: 534 VSKTALLGLTKAVAQDLASE-NIRVNCLAPGITKTKFAAAL 573
+K L A+ + LA+ ++ ++A+
Sbjct: 248 AAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQASSAI 288
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 42.6 bits (101), Expect = 5e-04
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 33/103 (32%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
G H+GHA D++ R+ R+ G + G D H GI + + +
Sbjct: 36 PNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADR 95
Query: 333 -----KKLWR-------------EEKKTRHEIGREKFIEKVWE 357
+++ EE RH + + +
Sbjct: 96 NTSAFRRMAEVLNSSNDDYIRTSEE---RHYKASQAIWQAMVA 135
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 42.6 bits (101), Expect = 5e-04
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 33/103 (32%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
G H+GHA D+I R+ R+ G + G D H GI +
Sbjct: 23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARR 82
Query: 333 -----KKLWR-------------EEKKTRHEIGREKFIEKVWE 357
++L + H + +++ +
Sbjct: 83 NSDVFQRLQEKLNISFDRFIRTSDA---DHYEASKAIWKRMAD 122
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 42.2 bits (100), Expect = 5e-04
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 33/103 (32%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
V HLGHA T D+I R+ R++ + G D H GI+ + +V+
Sbjct: 16 VNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDR 75
Query: 333 -----KKLWR-------------EEKKTRHEIGREKFIEKVWE 357
KKLW + H +K E+ ++
Sbjct: 76 NAERFKKLWEFLKIEYTKFIRTTDP---YHVKFVQKVFEECYK 115
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 41.5 bits (98), Expect = 8e-04
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 33/103 (32%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
V + H+GH + + D + R++R+KG+ G D H G++
Sbjct: 37 VNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTS 96
Query: 333 -----KKLWR-------------EEKKTRHEIGREKFIEKVWE 357
K+ ++ HE + +K+
Sbjct: 97 VSSEFKQCFQEMNYDMNYFIRTTNP---THEKLVQDIWKKLAA 136
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 40.2 bits (95), Expect = 0.003
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 245 EAAWYPWWEKQGFFKPEYGRKSIGEKNP-KGKFVMVIPPPNVTGTLHLGHALTNAVEDSI 303
E W+ + Y + EKN F++ PP G LH+GHAL ++D I
Sbjct: 24 EPQIQEKWDAEDQ----YHK--ALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFI 77
Query: 304 TRWNRMKGKTTLWNPGCD-HAGIATQVVVEKKLWREEKKTRHEIGREKFIEK 354
R+ M+G + PG D H G+ + + KK R ++ +F EK
Sbjct: 78 VRYKTMQGFYAPYVPGWDTH-GLPIEQALTKK-----GVDRKKMSTAEFREK 123
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 39.6 bits (92), Expect = 0.004
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 27/100 (27%)
Query: 285 VTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCD-H----------AGIATQVVVE- 332
V H+GH + + D I R++R+KG+ G D H ++
Sbjct: 20 VNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTA 79
Query: 333 -----KKLWRE----------EKKTRHEIGREKFIEKVWE 357
KK + + +H+ ++ K+ +
Sbjct: 80 VAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQ 119
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 37.3 bits (87), Expect = 0.015
Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 41/162 (25%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEH 83
+G A+ + A G +V+ R S ++ L + + D L
Sbjct: 25 LGHHAARAIRAAGHDLVLIHRPSSQ----IQRLAYLEPECRVAEML------DHAGLERA 74
Query: 84 AEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGG 143
G+D ++ +A P+ W + + T +
Sbjct: 75 LR----GLDGVIFSAGYYPSRPR-------RWQEEVASALGQ----TNPFYAACLQARVP 119
Query: 144 SIVYVSSIGGLAPFK----------------LLGAYSVSKTA 169
I+YV S + +Y + K A
Sbjct: 120 RILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWA 161
Score = 35.3 bits (82), Expect = 0.059
Identities = 22/162 (13%), Positives = 43/162 (26%), Gaps = 41/162 (25%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEH 452
+G A+ + G +V+ R S ++ L + + D L
Sbjct: 25 LGHHAARAIRAAGHDLVLIHRPSSQ----IQRLAYLEPECRVAEML------DHAGLERA 74
Query: 453 AEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGG 512
G+D ++ +A P+ W + + T +
Sbjct: 75 LR----GLDGVIFSAGYYPSRPR-------RWQEEVASALGQ----TNPFYAACLQARVP 119
Query: 513 SIVYVSSIGGLAPFK----------------LLGAYSVSKTA 538
I+YV S + +Y + K A
Sbjct: 120 RILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWA 161
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.017
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 204 KKEVKKKETNDEPIVYTSNTAPG 226
K+ +KK + + + Y ++AP
Sbjct: 19 KQALKKLQASLKL--YADDSAPA 39
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 36.9 bits (86), Expect = 0.018
Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 42/166 (25%)
Query: 16 VVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKE 75
+VT ++ G+G AI L V +S + +A E + V C +A +
Sbjct: 6 LVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI----------VACDLADAQ 55
Query: 76 DRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLP 135
L + D ++ V VE P W+ I + N+ + +
Sbjct: 56 AVHDLVK-------DCDGIIHLGGV------SVERP---WNDILQANIIGAY----NLYE 95
Query: 136 YIRKRNGGSIVYVSS---IGGL---------APFKLLGAYSVSKTA 169
R IV+ SS IG P + Y +SK
Sbjct: 96 AARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141
Score = 35.0 bits (81), Expect = 0.073
Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 42/166 (25%)
Query: 385 VVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKE 444
+VT ++ G+G AI L T V +S + +A E + V C +A +
Sbjct: 6 LVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEI----------VACDLADAQ 55
Query: 445 DRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLP 504
L + D ++ V VE P W+ I + N+ + +
Sbjct: 56 AVHDLVK-------DCDGIIHLGGV------SVERP---WNDILQANIIGAY----NLYE 95
Query: 505 YIRKRNGGSIVYVSS---IGGL---------APFKLLGAYSVSKTA 538
R IV+ SS IG P + Y +SK
Sbjct: 96 AARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 36.1 bits (84), Expect = 0.037
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 24 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQK 79
IG + + L VV ++ + N+++ + ++ + + +D
Sbjct: 39 IGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 98
Query: 80 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 139
G+D ++ AA+ G V + N+ +L R
Sbjct: 99 ACA-------GVDYVLHQAAL----GSVPRSIND-PITSNATNIDGFL----NMLIAARD 142
Query: 140 RNGGSIVYVSS 150
S Y +S
Sbjct: 143 AKVQSFTYAAS 153
Score = 34.6 bits (80), Expect = 0.12
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 393 IGFAIAKRLSTEGASVVI----SSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQK 448
IG + + L VV ++ + N+++ + ++ + + +D
Sbjct: 39 IGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN 98
Query: 449 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 508
G+D ++ AA+ G V + N+ +L R
Sbjct: 99 ACA-------GVDYVLHQAAL----GSVPRSIND-PITSNATNIDGFL----NMLIAARD 142
Query: 509 RNGGSIVYVSS 519
S Y +S
Sbjct: 143 AKVQSFTYAAS 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.044
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 332 EK-KLWREEKKTRHEIGREKFIEKVWEWKKE 361
E + WREE++ R + EW+++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREK 115
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2,
protein ST initiative, midwest center for structural
genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium
eligens}
Length = 278
Score = 35.2 bits (82), Expect = 0.062
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 377 SRLAGKVA-------VVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
S++ A + TASS G AI K K+ + K L G
Sbjct: 172 SKVVASAAEVLGISVIGTASSHGTLEAIGK----------CRGDKKL-LVKLQALLDDAG 220
Query: 430 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 477
++ +CHV + K+ + ++ +G D+ V G +
Sbjct: 221 YEGGKLRICHVENEALADKIADMIKQAYGTTDVCVYK------AGGLC 262
Score = 34.5 bits (80), Expect = 0.11
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 8 SRLTGKVA-------VVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
S++ A + TASS G AI K K+ + K L G
Sbjct: 172 SKVVASAAEVLGISVIGTASSHGTLEAIGK----------CRGDKKL-LVKLQALLDDAG 220
Query: 61 HQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 108
++ +CHV + K+ + ++ +G D+ V G +
Sbjct: 221 YEGGKLRICHVENEALADKIADMIKQAYGTTDVCVYK------AGGLC 262
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 34.5 bits (80), Expect = 0.11
Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 24 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQK 79
IG + ++L V+ S+ + N+++ + E + + + ++
Sbjct: 37 IGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96
Query: 80 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 139
+ + G+D ++ AA+ G V + N+ +L +
Sbjct: 97 VMK-------GVDHVLHQAAL----GSVPRSIVD-PITTNATNITGFL----NILHAAKN 140
Query: 140 RNGGSIVYVSS 150
S Y +S
Sbjct: 141 AQVQSFTYAAS 151
Score = 33.4 bits (77), Expect = 0.28
Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 20/131 (15%)
Query: 393 IGFAIAKRLSTEGASVVI----SSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQK 448
IG + ++L V+ S+ + N+++ + E + + + ++
Sbjct: 37 IGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ 96
Query: 449 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 508
+ + G+D ++ AA+ G V + N+ +L +
Sbjct: 97 VMK-------GVDHVLHQAAL----GSVPRSIVD-PITTNATNITGFL----NILHAAKN 140
Query: 509 RNGGSIVYVSS 519
S Y +S
Sbjct: 141 AQVQSFTYAAS 151
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 34.9 bits (80), Expect = 0.12
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 348 REKFIEKVWEWKKEVFSTSTKIMST-AVNASRLAGKVAVVT-ASSDGIGFAIAKRLSTEG 405
R+K W++ +++ S + A N K ++T A IG + + L G
Sbjct: 641 RKKTPAGDWKYDRQLSSLFLDGLEKAAFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGG 700
Query: 406 ASVVISSRKES 416
A VV+++ + S
Sbjct: 701 AKVVVTTSRFS 711
Score = 34.6 bits (79), Expect = 0.15
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 2 STAVNASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKES 47
A N K ++T A IG + + L GA VV+++ + S
Sbjct: 665 KAAFNGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFS 711
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 34.9 bits (80), Expect = 0.13
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 371 STAVNASRLAGKVAVVT-ASSDGIGFAIAKRLSTEGASVVISSRKES 416
+ A + GK A++T A + IG + + L + GA V++++ + S
Sbjct: 642 AAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS 688
Score = 34.5 bits (79), Expect = 0.15
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 2 STAVNASRLTGKVAVVT-ASSDGIGFAIAKRLSAEGASVVISSRKES 47
+ A + GK A++T A + IG + + L + GA V++++ + S
Sbjct: 642 AAARSGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFS 688
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 33.9 bits (78), Expect = 0.14
Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 44/167 (26%)
Query: 16 VVTASSDGIGFAIAKRLSAEGASVVISSRKE-SNVNKAVETLQKEGHQKISGVVCHVAKK 74
+VT ++ +G + +RL+ + ++ E V C +A
Sbjct: 7 LVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEEC-----------VQCDLADA 55
Query: 75 EDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVL 134
+ G D +V + V E +++I + N+ + +
Sbjct: 56 NAVNAMVA-------GCDGIVHLGGI-----SV----EKPFEQILQGNIIGLY----NLY 95
Query: 135 PYIRKRNGGSIVYVSS---IGGL---------APFKLLGAYSVSKTA 169
R IV+ SS IG P + G Y VSK
Sbjct: 96 EAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCF 142
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 33.5 bits (77), Expect = 0.27
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 259 KPEYGRKSIGEKNPKGKFVMV-IPPPNVTGTLHLGHALTNAVEDSITR 305
+G IG KGK V+V N T LH+GHA + D + R
Sbjct: 107 GDRFGSSEIG----KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMAR 150
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics,
PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A
{Ruminococcus gnavus}
Length = 298
Score = 33.4 bits (77), Expect = 0.27
Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 49 VNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 108
+ + G + + + H +E +++ +++F + + T +
Sbjct: 234 ADCVAADVVNAGDKIL--AIAHCNCEERAKEVQRLLKERFAVKSSFIVD------TSGIS 285
Score = 33.4 bits (77), Expect = 0.27
Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 418 VNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 477
+ + G + + + H +E +++ +++F + + T +
Sbjct: 234 ADCVAADVVNAGDKIL--AIAHCNCEERAKEVQRLLKERFAVKSSFIVD------TSGIS 285
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 33.4 bits (75), Expect = 0.29
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 23 GIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFE 82
+ L+ G V ++ R + K G Q + + V
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLS-----AGVQHSTPISLDVNDDAALDAEVA 67
Query: 83 HAEKKFGGIDILVS 96
D+++S
Sbjct: 68 -------KHDLVIS 74
Score = 33.4 bits (75), Expect = 0.29
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 392 GIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFE 451
+ L+ G V ++ R + K G Q + + V
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLS-----AGVQHSTPISLDVNDDAALDAEVA 67
Query: 452 HAEKKFGGIDILVS 465
D+++S
Sbjct: 68 -------KHDLVIS 74
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 32.8 bits (75), Expect = 0.34
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 31/129 (24%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEH 83
+G +A+RL+A+G V R + +GV +A L
Sbjct: 14 LGLELARRLTAQGHEVTGLRRSAQPMP--------------AGVQTLIADVTRPDTLASI 59
Query: 84 AEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGG 143
+ +ILV A + + V+ + L +
Sbjct: 60 VHLRP---EILVYCVAASEYSDEHYR----------LSYVEG----LRNTLSALEGAPLQ 102
Query: 144 SIVYVSSIG 152
+ +VSS G
Sbjct: 103 HVFFVSSTG 111
Score = 30.8 bits (70), Expect = 1.5
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 31/129 (24%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEH 452
+G +A+RL+ +G V R + +GV +A L
Sbjct: 14 LGLELARRLTAQGHEVTGLRRSAQPMP--------------AGVQTLIADVTRPDTLASI 59
Query: 453 AEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRKRNGG 512
+ +ILV A + + V+ + L +
Sbjct: 60 VHLRP---EILVYCVAASEYSDEHYR----------LSYVEG----LRNTLSALEGAPLQ 102
Query: 513 SIVYVSSIG 521
+ +VSS G
Sbjct: 103 HVFFVSSTG 111
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 32.0 bits (72), Expect = 0.58
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 233 GPLPSSYSPQYVEAAWYPWWEKQGFFKPEYGRKSIGEKNPKGKFVMVIPPPNVTGTLHLG 292
G + P+ EA YP W EY K++ E K + P G G
Sbjct: 115 GEIADEGEPEEHEALRYPAWVA------EYRLKALWELKDYPKIFLFHTMPYHKGLNEQG 168
Query: 293 -HALTNAVEDS---------ITRWNRMKGKTTLWNPGCDHAGIATQVVVEKK 334
H + + ++ + + M G + + PG G + + + +
Sbjct: 169 SHEVAHLIKTHNPLLVLVAGKGQKHEMLGASWVVVPGDLSEGEYSLLDLRAR 220
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.4 bits (71), Expect = 1.2
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
++ ++ A+ IG +AK G + R+ + + E Q K SG
Sbjct: 6 RILLIGATGY-IGRHVAKASLDLGHPTFLLVRESTA-SSNSEKAQLLESFKASGANIVHG 63
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAA 99
+D L + +D+++S
Sbjct: 64 SIDDHASL----VEAVKNVDVVISTVG 86
Score = 29.9 bits (67), Expect = 3.4
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
++ ++ A+ IG +AK G + R+ + + E Q K SG
Sbjct: 6 RILLIGATGY-IGRHVAKASLDLGHPTFLLVRESTA-SSNSEKAQLLESFKASGANIVHG 63
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAA 468
+D L + +D+++S
Sbjct: 64 SIDDHASL----VEAVKNVDVVISTVG 86
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program
for RICE genome research, unknown function; NMR {Oryza
sativa} SCOP: d.52.8.1
Length = 74
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 132 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 177
E+ PY+ GG + ++ G + +L G +V +T + ++K +
Sbjct: 15 EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKL 60
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 501 EVLPYIRKRNGGSIVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAV 546
E+ PY+ GG + ++ G + +L G +V +T + ++K +
Sbjct: 15 EIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKL 60
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 31.1 bits (70), Expect = 1.2
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+V +V + IG I + G + R E N ++ +Q + K G A
Sbjct: 6 RVLIVGGTGY-IGKRIVNASISLGHPTYVLFRPEVVSN--IDKVQMLLYFKQLGAKLIEA 62
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVE 109
+D Q+L +D+++S A + ++E
Sbjct: 63 SLDDHQRL----VDALKQVDVVISALAGGVLSHHILE 95
Score = 29.9 bits (67), Expect = 3.4
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 441
+V +V + IG I + G + R E N ++ +Q + K G A
Sbjct: 6 RVLIVGGTGY-IGKRIVNASISLGHPTYVLFRPEVVSN--IDKVQMLLYFKQLGAKLIEA 62
Query: 442 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVE 478
+D Q+L +D+++S A + ++E
Sbjct: 63 SLDDHQRL----VDALKQVDVVISALAGGVLSHHILE 95
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 31.5 bits (72), Expect = 1.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 270 KNPKGKFVMVIPP-PNVTGTLHLGHA 294
KG+ V+ P P+ G LH+GHA
Sbjct: 91 AGVKGEVVLRFAPNPS--GPLHIGHA 114
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 30.7 bits (69), Expect = 1.3
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQ----KISGVVCHVAKKEDRQK 79
++A RL G VV+ SR + + + Q V+ +E
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSS 98
Query: 80 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 139
L +++ G I + VSN E + V F +
Sbjct: 99 LCSLSDQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGP 158
Query: 140 RNGGSIVYVSS 150
R+G V +
Sbjct: 159 RDGNRQVPICG 169
Score = 29.2 bits (65), Expect = 4.1
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQ----KISGVVCHVAKKEDRQK 448
++A RL G VV+ SR + + + Q V+ +E
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSS 98
Query: 449 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 508
L +++ G I + VSN E + V F +
Sbjct: 99 LCSLSDQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGP 158
Query: 509 RNGGSIVYVSS 519
R+G V +
Sbjct: 159 RDGNRQVPICG 169
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 31.0 bits (71), Expect = 1.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 13 KVAVV-TASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
KV V+ A S G A A+ L+ GA V ++ K + N ++L +EG + + G
Sbjct: 11 KVLVLGLARS---GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
Score = 29.1 bits (66), Expect = 5.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 382 KVAVV-TASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
KV V+ A S G A A+ L+ GA V ++ K + N ++L +EG + + G
Sbjct: 11 KVLVLGLARS---GEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCG 62
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 29.8 bits (68), Expect = 1.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 56
+G+ +AK LS +G +V+ + KA +
Sbjct: 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI 47
Score = 29.4 bits (67), Expect = 2.3
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETL 425
+G+ +AK LS +G +V+ + KA +
Sbjct: 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI 47
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 30.4 bits (68), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 IGFAIAKRLSAEGASVVISSR 44
G ++ ++ G SVV SR
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSR 50
Score = 28.5 bits (63), Expect = 6.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 393 IGFAIAKRLSTEGASVVISSR 413
G ++ ++ G SVV SR
Sbjct: 30 FGKSLGLKMLQCGYSVVFGSR 50
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 30.7 bits (70), Expect = 1.8
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 56
+G +A+ L E + I + + + +
Sbjct: 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKY 46
Score = 30.7 bits (70), Expect = 2.3
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETL 425
+G +A+ L E + I + + + +
Sbjct: 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKY 46
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET:
PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB:
1u7w_A* 1u7u_A* 1u80_A*
Length = 226
Score = 30.2 bits (69), Expect = 1.8
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 45/114 (39%)
Query: 379 LAGKVAVVTA----------------SSDGIGFAIAKRLSTEGASVVISSRKESNVNKAV 422
L ++TA SS +GFAIA + GA+V
Sbjct: 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANV-------------- 51
Query: 423 ETLQKEGHQKISGVV-------CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV 469
TL +SG V ++ +I + AAV
Sbjct: 52 -TL-------VSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 97
Score = 30.2 bits (69), Expect = 1.8
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 45/114 (39%)
Query: 10 LTGKVAVVTA----------------SSDGIGFAIAKRLSAEGASVVISSRKESNVNKAV 53
L ++TA SS +GFAIA + GA+V
Sbjct: 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANV-------------- 51
Query: 54 ETLQKEGHQKISGVV-------CHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV 100
TL +SG V ++ +I + AAV
Sbjct: 52 -TL-------VSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 97
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 30.2 bits (67), Expect = 1.8
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEG 60
+VA++ + + +G +A RL+ G +V+ SR+E ++
Sbjct: 2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48
Score = 29.1 bits (64), Expect = 4.3
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 382 KVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEG 429
+VA++ + + +G +A RL+T G +V+ SR+E ++
Sbjct: 2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid
binding, protei structure initiative; HET: ELA; 2.65A
{Streptococcus agalactiae}
Length = 285
Score = 30.6 bits (70), Expect = 1.9
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 51 KAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 108
+ V+ + +G I + H ++ ++L+ K D+ + + G V+
Sbjct: 219 EIVKEMTADGEYDI--AIIHSRAQDKAEQLYNLLAKAGLKDDLEIVS------FGGVI 268
Score = 30.6 bits (70), Expect = 1.9
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 420 KAVETLQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVV 477
+ V+ + +G I + H ++ ++L+ K D+ + + G V+
Sbjct: 219 EIVKEMTADGEYDI--AIIHSRAQDKAEQLYNLLAKAGLKDDLEIVS------FGGVI 268
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 30.8 bits (70), Expect = 2.0
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 283 PNVTGTLHLGHALTNAVE-DSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKK 341
P G +H GH + D R+ R+KG+ ++ G D G K E +
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-----EGR 65
Query: 342 TRHEIGREKFIEKVWEWKKEVF 363
+ EI +++ E K F
Sbjct: 66 SPREI-----VDEFHEQIKITF 82
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
flavoprotein, structural genomics protein structure
initiative; 1.83A {Streptococcus pneumoniae}
Length = 232
Score = 29.9 bits (68), Expect = 2.1
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 29/105 (27%)
Query: 12 GKVAVVTA----------------SSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVET 55
+VT+ S+ +G I + L + G V + + K +
Sbjct: 3 AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRA-------- 54
Query: 56 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV 100
L+ E H +S + + + + L +++ +L+ + AV
Sbjct: 55 LKPEPHPNLS--IREI---TNTKDLLIEMQERVQDYQVLIHSMAV 94
Score = 29.2 bits (66), Expect = 4.1
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 29/105 (27%)
Query: 381 GKVAVVTA----------------SSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVET 424
+VT+ S+ +G I + L + G V + + K +
Sbjct: 3 AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRA-------- 54
Query: 425 LQKEGHQKISGVVCHVAKKEDRQKLFEHAEKKFGGIDILVSNAAV 469
L+ E H +S + + + + L +++ +L+ + AV
Sbjct: 55 LKPEPHPNLS--IREI---TNTKDLLIEMQERVQDYQVLIHSMAV 94
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 30.0 bits (68), Expect = 2.6
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 5 VNASRLTGKVAVVTASSDG---IGFAIAKRLSAEGASVVISSRKESNVNKAVE 54
+ ++ V ++ G IG ++ + L A SV +R S AV+
Sbjct: 2 MTTKDISRPVCIL-----GLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD 49
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 29.3 bits (66), Expect = 2.8
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISG 66
+ +L+ G +V + S + K +E + I G
Sbjct: 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPG 56
Score = 27.8 bits (62), Expect = 8.4
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 393 IGFAIAKRLSTEGASVVISSRKESNVNKAVETLQKEGHQKISG 435
+ +L+ G +V + S + K +E + I G
Sbjct: 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPG 56
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 29.8 bits (68), Expect = 3.0
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 286 TGTLHLGH---ALTNAVE 300
TG LH+GH AL N V+
Sbjct: 22 TGKLHIGHLVGALENWVK 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 29.9 bits (68), Expect = 3.3
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 286 TGTLHLGH---ALTNAVE 300
TG LHLGH +L N V
Sbjct: 32 TGALHLGHLAGSLQNRVR 49
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.7 bits (66), Expect = 3.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 56
+G +A L+ G V I +R E
Sbjct: 30 VGRTMAGALADLGHEVTIGTRDPKATLARAEPD 62
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 30.0 bits (68), Expect = 3.5
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 257 FFKPEYGRKSIGEKN----PKGKFVMV-IPPPNVTGTLHLGHALTNAVEDSITR 305
+ E + + V+V N LH+GH A+ D+I R
Sbjct: 81 RLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIAR 134
>3ci0_I Pseudopilin GSPI; general secretory pathway, pseudopilus, type 4
pilin biogene methylation, protein transport; 2.20A
{Escherichia coli} SCOP: d.24.1.7
Length = 89
Score = 27.6 bits (61), Expect = 4.7
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 325 IATQVVVEKKLWREEKKTRHEIGREKFIEKVWEWKKEVFSTSTKIM 370
+A L ++ + G W W+ ST ++
Sbjct: 18 VAENQTALLYLMTRGQRAVRQQGESDMAGSRWYWRTTPLSTGNALL 63
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 29.1 bits (65), Expect = 4.8
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 19/86 (22%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQKLFEH 83
+++ L+ +G ++ +SR +E ++ G + + L+
Sbjct: 16 TARVLSRALAPQGWRIIGTSRNPDQ----MEAIRASGAEPL---------------LWPG 56
Query: 84 AEKKFGGIDILVSNAAVNPATGPVVE 109
E G+ L+ + A + PV+
Sbjct: 57 EEPSLDGVTHLLISTAPDSGGDPVLA 82
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 5.3
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAV--------------ETLQKEGHQKISGVVC 69
G + + L+A G V+ + + + + + +S V+
Sbjct: 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLI 76
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP:
d.38.1.1 PDB: 3sps_A
Length = 169
Score = 28.4 bits (64), Expect = 5.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 373 AVNASRLAGKVAVVTASSDGIGFAIAKRLSTEGASVVISSR 413
A+ A + A VVTAS D + F K +T G ++ +
Sbjct: 55 ALTAMKHANSA-VVTASIDSVDF---KSSATVGDALELEGF 91
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 28.5 bits (64), Expect = 6.0
Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 33/179 (18%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
K+ + +S +G A+ G V R + E L+ V+
Sbjct: 6 KIVL-IGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKV--------KKADVS 56
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
++ ++ + G D ++S A P P+ I++ +K
Sbjct: 57 SLDEVCEVCK-------GADAVIS------AFNPGWNNPD-----IYDETIKV----YLT 94
Query: 133 VLPYIRKRNGGSIVYVSSIGGL--APFKLLGAYSVSKTALLGLTKAVAQDLASENIRVN 189
++ ++K + V G L AP L +L KA+ + + ++
Sbjct: 95 IIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEK 153
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 28.9 bits (65), Expect = 6.1
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 34/161 (21%)
Query: 13 KVAVVTASSDGIGFAIAKRLSAEGASVVISSRKESNVNKAVETLQKEGHQKISGVVCHVA 72
+V VV A+ + + L +G V R E L++ G I VV ++
Sbjct: 23 RVLVVGANG-KVARYLLSELKNKGHEPVAMVRNEE----QGPELRERGASDI--VVANLE 75
Query: 73 KKEDRQKLFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQE 132
E F ID +V A P TG DK +++ QE
Sbjct: 76 ---------EDFSHAFASIDAVVFAAGSGPHTGA---------DKTILIDLWGAIKTIQE 117
Query: 133 VLPYIRKRNG-GSIVYVSSIGGLAPFK---LLGAYSVSKTA 169
++ G + VSS+G + P + + Y V+K
Sbjct: 118 A-----EKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRL 153
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical
insertions, protein transport; 2.35A {Homo sapiens}
SCOP: b.69.14.1
Length = 450
Score = 29.1 bits (64), Expect = 6.5
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 591 RLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRLTKSTVEFRFIGAYSVSKTALF- 649
+L VP+ A+L ++ A Y+ Q ++ + +GA + +
Sbjct: 342 QLTVPNF-SNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIF 400
Query: 650 ----GLTKVVAEDLAP 661
GL + + +
Sbjct: 401 SRNSGLVSITSRENVS 416
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 28.0 bits (63), Expect = 7.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVETL 56
+G IA S+ G SVV+ + E ++
Sbjct: 30 LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62
Score = 27.6 bits (62), Expect = 9.9
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 380 AGKVAVVTASSDGIGFAIAKRLSTEGASVVISSRKESNVNKAVETL 425
G++ G IA S+ G SVV+ + E ++
Sbjct: 27 CGRL----------GSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein;
1.60A {Streptomyces reticuli} PDB: 3fpv_A
Length = 192
Score = 28.4 bits (63), Expect = 7.3
Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 10/144 (6%)
Query: 514 IVYVSSIGGLAPFKLLGAYSVSKTALLGLTKAVAQDLASENIRVNCLAPGITKTKFAAAL 573
++ + + ++G + + T A A A + +T AA
Sbjct: 17 VLVGGAALAVLGAGVVGTVAANAADTTEATPAAAPVAARGGELTQ--STHLT---LEAAT 71
Query: 574 YETEEAHEIAVS-NVPMGRLAVPDEMGGIVAFLCSDDASYITGEVIVAAGGMQSRLTKST 632
A E A + +AV D G + L D A + E T
Sbjct: 72 KAARAAVEAAEKDGRHVS-VAVVDRNGNTLVTLRGDGAGPQSYESAERKAFTAVSWNAPT 130
Query: 633 VEFRFIGAYSVSKTALFGLTKVVA 656
E A L + +
Sbjct: 131 SELAKRLA---QAPTLKDIPGTLF 151
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 7.5
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 12 GKVAVVTASSDGIGFAIAKRLSAEGASVVI 41
+V ++ A + + ++A++L+ G V I
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTI 558
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 28.7 bits (65), Expect = 7.5
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 32/142 (22%)
Query: 24 IGFAIAKRLSAEGASVVI----SSRKESNVNKAVETLQKEGHQKISGVVCHVAKKEDRQK 79
IG IA+ L G VV ++ + ++ + H ++ V +A +
Sbjct: 33 IGSHIAELLLERGDKVVGIDNFATGRREHL---------KDHPNLTFVEGSIADHALVNQ 83
Query: 80 LFEHAEKKFGGIDILVSNAAVNPATGPVVECPENVWDKIFEVNVKSTFLLTQEVLPYIRK 139
L D +V AA + P++ ++ N V+ +K
Sbjct: 84 LIGDL-----QPDAVVHTAA-------SYKDPDDWYNDT-LTNCVGGS----NVVQAAKK 126
Query: 140 RNGGSIVYVSSIG--GLAPFKL 159
N G VY + G+ P +
Sbjct: 127 NNVGRFVYFQTALCYGVKPIQQ 148
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 28.7 bits (65), Expect = 8.2
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 283 PNVTGTLHLGHALTNAVEDSITRWNRMKGKTTLWNPGCDHAGIATQVVVEKKLWREEKKT 342
P G++HLGH L + D R+ RM+G + D G + ++ T
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ-----LGIT 81
Query: 343 RHEIGREKFIEKVWEWKKEVF 363
++ I ++ + + F
Sbjct: 82 PEQM-----IGEMSQEHQTDF 97
>1y7u_A Acyl-COA hydrolase; structural genomics, coenzyme A, protein
structure initiative, PSI, midwest center for structural
GE MCSG; HET: COA; 2.80A {Bacillus cereus} SCOP:
d.38.1.1
Length = 174
Score = 28.0 bits (63), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 373 AVNASRLAGKVAVVTASSDGIGF 395
+++ASR + K VTAS D + F
Sbjct: 51 SISASRHSRKE-CVTASMDWVDF 72
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national
project on protein struc functional analyses; HET: COA;
2.10A {Thermus thermophilus}
Length = 133
Score = 27.6 bits (62), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 373 AVNASRLAGKVAVVTASSDGIGF 395
V A+R A K VVT +D + F
Sbjct: 35 FVAATRHARKK-VVTVHADAVDF 56
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.4 bits (63), Expect = 9.2
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 24 IGFAIAKRLSAEGASVVISSRKESNVNKAVE 54
+G ++A++ +A GA V + +R+ + + E
Sbjct: 166 VGMSVARKFAALGAKVKVGARESDLLARIAE 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.377
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,373,326
Number of extensions: 717865
Number of successful extensions: 4607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3074
Number of HSP's successfully gapped: 952
Length of query: 762
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 661
Effective length of database: 3,881,772
Effective search space: 2565851292
Effective search space used: 2565851292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.1 bits)