BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9422
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3
Length = 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 45/49 (91%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2
Length = 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 45/49 (91%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3
Length = 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2
SV=1
Length = 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3
Length = 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2
Length = 148
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 41/43 (95%)
Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
AGYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL A
Sbjct: 106 AGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=5
Length = 148
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK VGGACVL A
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3
Length = 148
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ +GYYKVLGKG++PKQPVIVKAKFFS+ AEEKIK+VGGACVL
Sbjct: 100 IIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVG 148
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A
PE=1 SV=1
Length = 149
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++D+ AG++KVLGKGR+P QPV+VKAK+FSK AE +I AVGGACVLTA
Sbjct: 101 VIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3
SV=1
Length = 145
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%)
Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
AGY+KVLGKG +PKQP+IVKAKFFS AE KIKA GGAC+L A
Sbjct: 103 AGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a
PE=3 SV=1
Length = 148
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%), Gaps = 2/52 (3%)
Query: 162 TSLLVDIA--GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
T+ +VD+ G++KVLG G +P QP+IVKA++FSK+AE+KIKAVGGAC+L A
Sbjct: 97 TAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 OS=Entamoeba histolytica GN=rpl27a-3
PE=3 SV=1
Length = 149
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 39/42 (92%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
GY+KVLGKG +PKQPVIV+A++FS+ A++KIKAVGGAC LTA
Sbjct: 108 GYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2
PE=3 SV=1
Length = 149
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 39/42 (92%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
GY+KVLGKG +PKQPVIV+A++FS+ A++KIKAVGGAC LTA
Sbjct: 108 GYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 OS=Entamoeba histolytica GN=rpl27a-1
PE=3 SV=1
Length = 149
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 39/42 (92%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
GY+KVLGKG +PKQPVIV+A++FS+ A++KIKAVGGAC LTA
Sbjct: 108 GYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A
PE=2 SV=2
Length = 149
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 16/117 (13%)
Query: 103 HHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALT 162
HH+ N + H F V N + R+ + R +N+ + S G + L
Sbjct: 41 HHRINFDKYHPGYFGKVGMRNFHLRRQHKFR--------PEINLDKLWSLVGAEKFAELE 92
Query: 163 ------SLLVDIA--GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
+ ++D+ GYYK+LG+G +P +PVIVKAK+FSK AE+KIK GG C+L+A
Sbjct: 93 KEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149
>sp|P48161|RL27A_EUPCR 60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1
Length = 148
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%), Gaps = 2/50 (4%)
Query: 164 LLVDIA--GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
+L+D+ GYYKVLGKG +P+ P++VKAK F+ AE++IK VGGACVL A
Sbjct: 98 ILIDVVKHGYYKVLGKGLLPEVPLVVKAKLFTPTAEKRIKQVGGACVLRA 147
>sp|P02406|RL28_YEAST 60S ribosomal protein L28 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL28 PE=1 SV=3
Length = 149
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 162 TSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
T+ ++D AGY K+LGKGRIP PVIVKA+F SKLAEEKI+A GG L A
Sbjct: 98 TAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
>sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC
PE=2 SV=2
Length = 146
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 165 LVDIA--GYYKVLGKGRIPK-QPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
L+D+ G++KVLGKG +P+ +P +VKAK SK AE+KIK GGA VLTA
Sbjct: 97 LIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB
PE=2 SV=1
Length = 146
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Query: 165 LVDIA--GYYKVLGKGRIPK-QPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
L+D+ G++KVLGKG +P+ +P +VKAK SK AE+KIK GGA VLTA
Sbjct: 97 LIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>sp|P78987|RL27A_ERYGR 60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2
SV=1
Length = 149
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
GY KVLGKGRIPK P++V+A++FSK AE KI GG L A
Sbjct: 108 GYSKVLGKGRIPKVPLVVRARWFSKEAERKITEAGGVVELVA 149
>sp|P36585|RL28A_SCHPO 60S ribosomal protein L28-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl28a PE=3 SV=3
Length = 148
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
+GY KVLGKGR+P+ PVIV+ ++ S+ AEEKIK GG L A
Sbjct: 106 SGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAGGVVELIA 148
>sp|P57728|RL28B_SCHPO 60S ribosomal protein L28-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl28b PE=1 SV=1
Length = 148
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
+GY KVLGKGR+P PVI++ ++ S+ AEEKIK GG L A
Sbjct: 106 SGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVVELIA 148
>sp|P47831|RL28_CANAX 60S ribosomal protein L28 (Fragment) OS=Candida albicans GN=RPL28
PE=3 SV=1
Length = 62
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAV 203
GY KVLGKGR+P+ PVIVKA+F SKLAEEK +++
Sbjct: 24 GYGKVLGKGRLPEVPVIVKARFVSKLAEEKSESL 57
>sp|P08978|RL28_NEUCR 60S ribosomal protein L28 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-28
PE=2 SV=1
Length = 149
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 93 HVGKRSLFKG--HHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMN-MGIV 149
H G R + G HH+ N+ + H F V + ++R + +LN+ + +
Sbjct: 28 HPGGRGMAGGQHHHRTNLDKYHPGYFGKVGMRHFHLLRNHQW------APILNIEKLWTL 81
Query: 150 RSATGRQVLLA----LTSLLVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAV 203
A R+ ++ T+ ++D+ GY K+LGKGR+P+ P++V+A++ S AE KIK
Sbjct: 82 VPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQVPIVVRARYVSAEAERKIKEA 141
Query: 204 GGACVLTA 211
GG L A
Sbjct: 142 GGVIELVA 149
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a OS=Tenebrio molitor GN=RpL27A PE=2 SV=1
Length = 148
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 165 LVDI--AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
++DI AGYYK+LGKG ++K F E+KIKAVGGACVL+A
Sbjct: 100 VIDIVKAGYYKLLGKGACLTNLSLLKPSFSLNRLEDKIKAVGGACVLSA 148
>sp|Q3APJ2|RL15_CHLCH 50S ribosomal protein L15 OS=Chlorobium chlorochromatii (strain
CaD3) GN=rplO PE=3 SV=1
Length = 184
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 171 YYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
Y+KVLG G + QP+ + A FFSK AEEKI A GG ++
Sbjct: 110 YFKVLGAGEV-TQPITITAHFFSKSAEEKIAAAGGKTII 147
>sp|O15883|RL27A_TRYBB 60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A
PE=2 SV=1
Length = 145
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 158 LLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211
+L + LL + GY K+LG G + + P IVKA++ SKLA++KI+ GGA VL A
Sbjct: 95 VLPVIDLLAN--GYSKLLGNGHL-QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145
>sp|Q8U018|RL15_PYRFU 50S ribosomal protein L15P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl15p PE=1 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 144 MNMGIVRSATGRQVLLALTSLLVDIAGYY-KVLGKGRIPKQPVIVKAKFFSKLAEEKIKA 202
M MGI G+ ++VD+ + KVLG G++ + P+++KA+ FS AEEKIKA
Sbjct: 89 MQMGIAYEEGGK--------IIVDVTQFADKVLGTGKLTR-PLVIKARAFSPKAEEKIKA 139
Query: 203 VGGACVL 209
GG VL
Sbjct: 140 AGGEAVL 146
>sp|Q9V1V7|RL15_PYRAB 50S ribosomal protein L15P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl15p PE=3 SV=1
Length = 147
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 164 LLVDIAGYY-KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
++VD + KVLG G+I K P+++KA+ FS AEEKIKA GG VL
Sbjct: 101 IIVDTTQFADKVLGTGKITK-PLVIKARAFSSKAEEKIKAAGGEAVL 146
>sp|O59441|RL15_PYRHO 50S ribosomal protein L15P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl15p PE=3 SV=2
Length = 147
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 144 MNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAV 203
+ MGI G+ ++ T+ D KVLG GR+ + P+ +KAK FS AEEKIKA
Sbjct: 89 LQMGIAYEEEGK--IVVDTTQFAD-----KVLGTGRLTR-PLTIKAKAFSAKAEEKIKAA 140
Query: 204 GGACVL 209
GG +L
Sbjct: 141 GGEVIL 146
>sp|A6VH07|RL15_METM7 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C7
/ ATCC BAA-1331) GN=rpl15p PE=3 SV=1
Length = 143
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 120 LNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGR 179
N N G++++ E +GE + I++ QV + GY KVLGKGR
Sbjct: 60 FNRNPGLIKQLETINIGE------LEEYILKYKDAFQVEDGKVVVDATEIGYEKVLGKGR 113
Query: 180 IPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
I ++VKA FS+ A+EKI+A GG V
Sbjct: 114 IS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|Q9LPV3|R27A1_ARATH Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana
GN=RPL27AA PE=5 SV=1
Length = 104
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 174 VLGKGRIPK-QPVIVKAKFFSKLAEEKIKAVGGACVLT 210
VLGKG +P+ +PV+VKAK S E+KIK G A VLT
Sbjct: 63 VLGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100
>sp|B7KI04|RL15_CYAP7 50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424)
GN=rplO PE=3 SV=1
Length = 154
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
L+ G K+LG G + P+ +KA F+K A+EKI+A GG+CV+
Sbjct: 102 LITTNDGPLKILGNGEL-TIPLTIKAAAFTKGAQEKIEAAGGSCVV 146
>sp|B4SBW6|RL15_PELPB 50S ribosomal protein L15 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rplO PE=3 SV=1
Length = 184
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 157 VLLALTSLL-VDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
+L L SLL A Y+K+LG G + + + A FSK AEEKI A GG V
Sbjct: 95 TILDLKSLLHASNADYFKILGNGEL-TSAITITAHAFSKSAEEKIAAAGGTVV 146
>sp|A4FVT7|RL15_METM5 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C5
/ ATCC BAA-1333) GN=rpl15p PE=3 SV=1
Length = 143
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 120 LNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGR 179
N N ++++ E +GE + + G+ V+ A T GY KVLGKGR
Sbjct: 60 FNRNPCLIKQLETINIGELEEYILKYKDAFQVEDGKVVVDATT------IGYEKVLGKGR 113
Query: 180 IPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
I ++VKA FS+ A+EKI+A GG V
Sbjct: 114 IS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|A9A9P2|RL15_METM6 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain C6
/ ATCC BAA-1332) GN=rpl15p PE=3 SV=1
Length = 143
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 120 LNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGR 179
N N G++++ E +GE + I++ QV + G+ KVLGKGR
Sbjct: 60 FNRNPGLIKQLETINIGE------LEEYILKYKDAFQVEDGKVVVDATEIGFEKVLGKGR 113
Query: 180 IPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
I ++VKA FS+ A+EKI+A GG V
Sbjct: 114 IS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|A9BFZ9|RL15_PETMO 50S ribosomal protein L15 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=rplO PE=3 SV=1
Length = 151
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGG 205
K+LGKG I K P++VKA FS+ A EKI+AVGG
Sbjct: 114 KILGKGEISK-PLVVKANIFSQTAREKIEAVGG 145
>sp|B3EP42|RL15_CHLPB 50S ribosomal protein L15 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplO PE=3 SV=1
Length = 182
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
A Y+K+LG G + K PV + A F SK A+EKI GG L
Sbjct: 108 ADYFKILGNGEL-KSPVTITAHFVSKSAQEKILQAGGTITL 147
>sp|Q5JJH0|RL15_PYRKO 50S ribosomal protein L15P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl15p PE=3 SV=1
Length = 148
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 137 EEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLA 196
+E L + GI+ G+ V A T+L VD K+LG G++ + ++VKA + + A
Sbjct: 82 DENFELFKDAGIIYEEDGKLVFDA-TALGVD-----KILGTGKLTR-ALVVKAYYVTPKA 134
Query: 197 EEKIKAVGGACVLT 210
EEKIKA GG +L
Sbjct: 135 EEKIKAAGGEVLLA 148
>sp|P54047|RL15_METJA 50S ribosomal protein L15P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl15p PE=3 SV=1
Length = 143
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 164 LLVDIA--GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
+VD+ GY KVLGKG++ P+IVKA S+ A EKI+AVGG V
Sbjct: 96 FVVDVIELGYEKVLGKGKVT-IPMIVKAVEVSEKAREKIEAVGGEVV 141
>sp|A6UWW0|RL15_META3 50S ribosomal protein L15P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl15p PE=3 SV=1
Length = 143
Score = 38.1 bits (87), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 164 LLVDIA--GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
+++DI Y KVLGKG+I P+I+KA FS+ A+EKI++ GG V
Sbjct: 96 IVIDITTLDYEKVLGKGKIT-CPMIIKAVEFSESAKEKIESAGGEFV 141
>sp|Q46GB7|RL15_METBF 50S ribosomal protein L15P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl15p PE=3 SV=1
Length = 140
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
G KVLG GR+ K ++V ++ FS A EKI+A GG+C+
Sbjct: 100 GIEKVLGSGRVMKN-LVVTSEGFSASAREKIEAAGGSCI 137
>sp|Q8KAJ0|RL15_CHLTE 50S ribosomal protein L15 OS=Chlorobium tepidum (strain ATCC 49652
/ DSM 12025 / TLS) GN=rplO PE=3 SV=1
Length = 186
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 171 YYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
Y+KVLG G + V + A FFSK AEEKI GG V
Sbjct: 110 YFKVLGNGEL-TSTVTITAHFFSKSAEEKIAKAGGKIV 146
>sp|B9K8A5|RL15_THENN 50S ribosomal protein L15 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplO PE=3 SV=1
Length = 147
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGAC 207
++ D+ K+LG G + K P+IVKA FSK A EKI++VGG
Sbjct: 102 IVKDMKDGIKILGDGELTK-PLIVKAHAFSKSALEKIESVGGKA 144
>sp|Q6LXD1|RL15_METMP 50S ribosomal protein L15P OS=Methanococcus maripaludis (strain S2
/ LL) GN=rpl15p PE=3 SV=1
Length = 143
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
G+ KVLGKGRI ++VKA FS+ A+EKI+A GG V
Sbjct: 104 GFEKVLGKGRIS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|O62581|RL27A_ENCCU 60S ribosomal protein L27a OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL27A PE=3 SV=1
Length = 147
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
GY+ V+G ++P++VKA++F+ A+E+I VGG ++T
Sbjct: 106 GYHVVVGGKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146
>sp|B4S5A9|RL15_PROA2 50S ribosomal protein L15 OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=rplO PE=3 SV=1
Length = 184
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 171 YYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
Y+KVLG G + V + A F SK AEEKIK GG +L
Sbjct: 110 YFKVLGNGELG-TAVKITAHFVSKSAEEKIKQAGGEVILA 148
>sp|A6UQ66|RL15_METVS 50S ribosomal protein L15P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl15p PE=3 SV=1
Length = 143
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
G+ K+LGKGRI ++VKA FS+ A+EKI+A GG V
Sbjct: 104 GFEKILGKGRIS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|P14032|RL15_METVA 50S ribosomal protein L15P OS=Methanococcus vannielii GN=rpl15p
PE=3 SV=1
Length = 143
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
G+ K+LGKGRI ++VKA FS+ A+EKI+A GG V
Sbjct: 104 GFEKILGKGRIS-TAMVVKAVEFSEGAKEKIEAAGGEFV 141
>sp|Q8TRS5|RL15_METAC 50S ribosomal protein L15P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl15p PE=3
SV=1
Length = 140
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 170 GYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208
G KVLG GR+ K ++V ++ FS A EKI+ GG+C+
Sbjct: 100 GIEKVLGSGRVTKN-LVVTSEEFSASAREKIENAGGSCI 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,849,304
Number of Sequences: 539616
Number of extensions: 3243568
Number of successful extensions: 6446
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 6317
Number of HSP's gapped (non-prelim): 194
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)