Query psy9422
Match_columns 211
No_of_seqs 145 out of 1187
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 18:55:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00160 60S ribosomal protein 100.0 2.6E-40 5.7E-45 272.0 9.1 135 52-211 4-147 (147)
2 PRK06419 rpl15p 50S ribosomal 100.0 9.1E-39 2E-43 262.4 12.2 132 52-210 4-145 (148)
3 KOG1742|consensus 100.0 1.1E-36 2.3E-41 248.5 2.5 135 52-211 4-147 (147)
4 TIGR01071 rplO_bact ribosomal 99.9 3.3E-26 7.2E-31 186.9 10.3 99 86-208 45-145 (145)
5 COG0200 RplO Ribosomal protein 99.9 8.3E-26 1.8E-30 187.1 10.5 136 54-211 4-152 (152)
6 PRK05592 rplO 50S ribosomal pr 99.9 6E-25 1.3E-29 180.3 10.7 96 91-210 49-146 (146)
7 PF00828 Ribosomal_L18e: Ribos 99.9 5.8E-25 1.3E-29 174.6 2.6 122 67-210 1-129 (129)
8 KOG0846|consensus 99.4 2.4E-13 5.3E-18 120.8 7.0 98 91-209 68-174 (274)
9 PRK04005 50S ribosomal protein 99.4 1.5E-13 3.3E-18 108.9 4.4 71 101-210 24-94 (111)
10 COG1727 RPL18A Ribosomal prote 98.8 1.1E-08 2.3E-13 82.5 5.4 61 115-210 45-105 (122)
11 PTZ00469 60S ribosomal subunit 98.1 6.4E-06 1.4E-10 70.9 5.3 38 172-209 83-121 (187)
12 PTZ00195 60S ribosomal protein 98.0 5.7E-06 1.2E-10 71.7 4.5 37 172-209 91-129 (198)
13 KOG1714|consensus 84.6 0.6 1.3E-05 40.5 1.9 29 179-209 94-122 (188)
14 KOG3973|consensus 42.1 18 0.0004 34.8 2.2 54 17-81 319-375 (465)
15 COG4974 XerD Site-specific rec 31.1 60 0.0013 30.3 3.7 71 119-202 114-193 (300)
16 PF10531 SLBB: SLBB domain; I 21.1 88 0.0019 21.3 2.2 27 178-206 6-32 (59)
17 PF03263 Cucumo_2B: Cucumoviru 20.6 17 0.00038 28.9 -1.6 17 52-68 24-40 (103)
No 1
>PTZ00160 60S ribosomal protein L27a; Provisional
Probab=100.00 E-value=2.6e-40 Score=272.01 Aligned_cols=135 Identities=37% Similarity=0.520 Sum_probs=115.8
Q ss_pred eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCCC-CCCCCceEEeEEec
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNI-HQRHLTAFSIVLNM 122 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n-~~~~~k~y~pvINL 122 (211)
+.+||||.||||||| |||++||+||||||. |+||+++. |.+++|+||++ |...++.|+|+|||
T Consensus 4 r~kK~rK~RG~rt~G~G~~gkhR~~~GGrG~AG~~kH~~~~~~ky~--------p~~fGK~Gfr~~~~~~~~~~~~~INl 75 (147)
T PTZ00160 4 RFKKCRKMRGHVSHGYGRVGKHRKHPGGRGNAGGQHHHRINFDKYH--------PGYFGKVGMRHFHLKKNKYYCPTINV 75 (147)
T ss_pred ccccccCCCCCCccCCCCCCCCCCCCCCCcccCCCcceEEEeeecC--------CCccCCCCccCCccccccccCceeEH
Confidence 678999999999999 999999999999996 99999976 56778888875 44446677889999
Q ss_pred hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422 123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA 202 (211)
Q Consensus 123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa 202 (211)
++||+++++...+ +++ +.++.+| |||+.+++|+||||+|+|+++|++|+|++||++|+||||+
T Consensus 76 ~~L~~lv~~~~~~---------~~a---~~~~~~~-----vIDl~~~g~~KVLG~G~l~~~~v~Vka~~~Sk~A~ekIe~ 138 (147)
T PTZ00160 76 DKLWSLVPEETRY---------KYA---KKGDKAP-----VIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKA 138 (147)
T ss_pred HHHHHHhHHHHHH---------hhh---hccCCce-----EEEeeccCceEEecCCeEcCccEEEEEeecCHHHHHHHHH
Confidence 9999998774332 344 3455667 9999999999999999995379999999999999999999
Q ss_pred cCCEEEEcC
Q psy9422 203 VGGACVLTA 211 (211)
Q Consensus 203 AGG~V~lia 211 (211)
|||+|+++|
T Consensus 139 aGG~v~l~a 147 (147)
T PTZ00160 139 VGGACVLTA 147 (147)
T ss_pred cCCEEEEcC
Confidence 999999986
No 2
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Probab=100.00 E-value=9.1e-39 Score=262.43 Aligned_cols=132 Identities=25% Similarity=0.351 Sum_probs=118.0
Q ss_pred eeeccccccchhhcc-ccccCCCC--CCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCCCCCceEEeEEe
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLN 121 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~pvIN 121 (211)
+.+||||.||||||| |++++||+ ||||||+ |+||++++ |.|+||+||+++...+..|. +||
T Consensus 4 ~~~k~rk~RG~~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~--------p~~fpK~GF~~~~~~~~~~~-~IN 74 (148)
T PRK06419 4 KKKKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYG--------PDWYGKHGFKRPPKLIKEVS-TIN 74 (148)
T ss_pred ccccccCCCcCCCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeC--------CCCCCCCCccCCCcCcceee-eEE
Confidence 578999999999999 99999999 9999986 99999988 67999999999754456787 899
Q ss_pred chhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHH
Q psy9422 122 MNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIK 201 (211)
Q Consensus 122 L~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIE 201 (211)
|++||+++ +.|.+.+++ +.++..+ +||+.+.+|+||||+|+++ +||+|+|++||++|+||||
T Consensus 75 L~~L~~l~---------~~l~~~g~i---~~~~~~~-----vid~~~~g~~KVLG~G~l~-~pl~Vka~~fS~~A~ekIe 136 (148)
T PRK06419 75 VGELDELA---------DLLKAEGKA---EEEDGKI-----VVDLTELGYDKVLGGGKVT-RPLVIKADAFSEKAIEKIE 136 (148)
T ss_pred HHHHHHhH---------HHHHHCCcc---cccCCcc-----eeeeccCCceEEeCCCccC-cCEEEEEeccCHHHHHHHH
Confidence 99999885 346677786 4556667 9999999999999999999 8999999999999999999
Q ss_pred HcCCEEEEc
Q psy9422 202 AVGGACVLT 210 (211)
Q Consensus 202 aAGG~V~li 210 (211)
+|||+|+++
T Consensus 137 ~aGG~v~l~ 145 (148)
T PRK06419 137 AAGGEVVLS 145 (148)
T ss_pred HcCCEEEEe
Confidence 999999986
No 3
>KOG1742|consensus
Probab=100.00 E-value=1.1e-36 Score=248.48 Aligned_cols=135 Identities=39% Similarity=0.567 Sum_probs=122.0
Q ss_pred eeeccccccchhhcc-ccccCCCCCCCCCCc-----eEEEee--cCcceecCccccCCCCCCCCCCCCCCceEEeEEech
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-----WISMTA--NGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMN 123 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-----~~~~~~--~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~pvINL~ 123 (211)
.++||||+|||||+| |||+||||||||||+ +|+|++ ||||.++||+. +|...++.|+|+||||
T Consensus 4 ~~rKTrKLrGHVShGhgrigKhrkhpgGrg~agghhr~~fdKyhpgyfgkvgmr~---------yh~~rn~~~~P~vnld 74 (147)
T KOG1742|consen 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGHHHRINFDKYHPGYFGKVGMRH---------YHLKRNQSFCPTVNLD 74 (147)
T ss_pred hhhHHHHhhcccccccccccccccCCCCccccCCcccccccccCCCcccccchhH---------HHHhhccCcCCcccHH
Confidence 578999999999999 999999999999986 899955 89999999999 6666788999999999
Q ss_pred hhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCC-CCceEEEEecccHHHHHHHHH
Q psy9422 124 MGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIP-KQPVIVKAKFFSKLAEEKIKA 202 (211)
Q Consensus 124 kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs-~kpVtVkA~~fSksAkEKIEa 202 (211)
+||.++++++.++ +. ..+++.+| |||+...||.||||+|.++ .+||+|+|.+||+.|+|+|.+
T Consensus 75 kLWtlv~~~~~~~---------~~--~~k~g~aP-----vidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~ 138 (147)
T KOG1742|consen 75 KLWTLVREQTRVK---------AA--KNKTGAAP-----VIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKK 138 (147)
T ss_pred HHHHhhhHHHHHH---------Hh--ccCCCCCc-----eeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHh
Confidence 9999999987765 32 23456678 9999999999999999999 899999999999999999999
Q ss_pred cCCEEEEcC
Q psy9422 203 VGGACVLTA 211 (211)
Q Consensus 203 AGG~V~lia 211 (211)
+||.|++++
T Consensus 139 ~gg~~~~~~ 147 (147)
T KOG1742|consen 139 AGGAVVLTA 147 (147)
T ss_pred cCceeeecC
Confidence 999999875
No 4
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle.
Probab=99.93 E-value=3.3e-26 Score=186.92 Aligned_cols=99 Identities=24% Similarity=0.355 Sum_probs=82.1
Q ss_pred eecCcceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422 86 TANGKYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS 163 (211)
Q Consensus 86 ~~~g~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv 163 (211)
.++| ||+|||||| +||+||+++. ++.+|. +|||++|+++++++..++ ++.|.+.++
T Consensus 45 ~~~g--fEGGQ~Pl~rrlPK~GF~~~~-~~~~~~-~VNL~~L~~~~~~g~~i~-~~~L~~~gl----------------- 102 (145)
T TIGR01071 45 VRRG--FEGGQMPLYRRLPKRGFSNKR-FKKEYA-EVNLGKLAKLFPNGEVVT-LETLKEKGL----------------- 102 (145)
T ss_pred CCCe--ecCCCCceEEECCCCCCCCcc-cCccee-EEEHHHHhhhhhcCCEec-HHHHhhCcc-----------------
Confidence 4444 999999999 7999999863 468898 799999999887765565 555555444
Q ss_pred eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEE
Q psy9422 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208 (211)
Q Consensus 164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~ 208 (211)
|+ ...+|+||||+|+++ ++|+|+|++||++|+|+||+|||+|+
T Consensus 103 i~-~~~~~vKvLg~G~l~-~~l~I~a~~~S~sA~ekIE~aGG~v~ 145 (145)
T TIGR01071 103 IT-KKIKFVKVLGNGKLT-KPLTVKAHRVSKSAKAAIEAAGGSVE 145 (145)
T ss_pred Cc-CCCCceEEeCCCCcC-cCEEEEEEEECHHHHHHHHHcCCEEC
Confidence 44 334679999999999 89999999999999999999999984
No 5
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.3e-26 Score=187.08 Aligned_cols=136 Identities=22% Similarity=0.178 Sum_probs=104.3
Q ss_pred eccccccc-hhhcc-ccccCCC--CCCCCCCceEEEeecC-----cceecCccccC--CCCCCCCCCCCCCc-eEEeEEe
Q psy9422 54 HQNRTRQE-HVKLC-ERLKSTP--PGPADRKLWISMTANG-----KYFHVGKRSLF--KGHHQFNIHQRHLT-AFSIVLN 121 (211)
Q Consensus 54 ~~~r~~rg-hvs~~-gri~k~r--~~~~~rg~~~~~~~~g-----~~fe~Gq~~l~--~PKrGF~n~~~~~k-~y~pvIN 121 (211)
++-...|| +.+++ +..+.|| +..+|||.--.--++| ..||+|||||| +||+||+|+. +.. +|. +||
T Consensus 4 ~~l~~~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK~GF~~~~-~~~~~~~-~vn 81 (152)
T COG0200 4 NDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPKRGFTNSK-FKKVEYA-VVN 81 (152)
T ss_pred cccCcCCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCCCCCcccc-cccccee-EEE
Confidence 33334778 77777 8889998 7788998622211111 34889999999 8999999832 445 898 799
Q ss_pred chhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEe-cccHHHHHHH
Q psy9422 122 MNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAK-FFSKLAEEKI 200 (211)
Q Consensus 122 L~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~-~fSksAkEKI 200 (211)
+++|++++++...++ .+.|.+.+++ . +.. .. +||||+|+|+ +++.|++. .||++|+|+|
T Consensus 82 ~~~l~~~~~~~~~v~-~~~l~~~~~i---~-------------~~~-~~-vKvLg~G~l~-~~~~~~v~a~~S~~A~ekI 141 (152)
T COG0200 82 LGKLAELLPEGEEVT-LASLKAAGVI---R-------------KLK-DL-VKVLGNGKLT-KAVPVKVKAKASKSAIEKI 141 (152)
T ss_pred HHHhhhhcccccccc-HHHHhhCCeE---e-------------ccc-cc-cEEeccCeec-cceeEEEEeeeCHHHHHHH
Confidence 999999998887776 7788877775 1 111 12 8999999999 77777777 9999999999
Q ss_pred HHcCCEEEEcC
Q psy9422 201 KAVGGACVLTA 211 (211)
Q Consensus 201 EaAGG~V~lia 211 (211)
|+|||+|+++.
T Consensus 142 e~aGG~v~~~~ 152 (152)
T COG0200 142 EAAGGKVELIE 152 (152)
T ss_pred HHcCCEEEecC
Confidence 99999999863
No 6
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=99.92 E-value=6e-25 Score=180.32 Aligned_cols=96 Identities=28% Similarity=0.297 Sum_probs=80.9
Q ss_pred ceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeec
Q psy9422 91 YFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDI 168 (211)
Q Consensus 91 ~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~ 168 (211)
.||+|||||| +||+||+|+ ++.+|. +|||++|+.+ +++..++ +++|++.+++ .. ..
T Consensus 49 gFEGGQ~Pl~rrlPk~Gf~~~--~~~~y~-~VNL~~L~~~-~~~~~I~-~~~L~~~gli---~~--------------~~ 106 (146)
T PRK05592 49 GFEGGQMPLYRRLPKRGFTNI--FRKEYA-VVNLGDLNKF-EEGTEVT-LEALKAAGLI---RK--------------NI 106 (146)
T ss_pred ccccCCCceEEEcccCCcCCC--CcceEE-EEeHHHhhcc-CCCCeEC-HHHHHHCCcc---cC--------------CC
Confidence 3999999999 799999997 468999 7999999974 4445565 7888888876 11 11
Q ss_pred ccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 169 AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 169 ~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
.++||||+|+|+ ++|+|+|+.||++|+|+||+|||+|+++
T Consensus 107 -~~vKvLg~G~l~-~~i~I~a~~~S~sA~e~IE~aGG~v~~~ 146 (146)
T PRK05592 107 -KGVKVLGNGELT-KKLTVKAHKFSKSAKEAIEAAGGKVEEI 146 (146)
T ss_pred -cceEEEecCccc-cCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence 239999999999 9999999999999999999999999864
No 7
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
Probab=99.90 E-value=5.8e-25 Score=174.64 Aligned_cols=122 Identities=26% Similarity=0.319 Sum_probs=88.0
Q ss_pred ccccCCCCC--CCCCCceEEEeecCcceecCccccC--CCCCCCCCCCC--CCceEEeEEechhhhhhhcccceechhhH
Q psy9422 67 ERLKSTPPG--PADRKLWISMTANGKYFHVGKRSLF--KGHHQFNIHQR--HLTAFSIVLNMNMGIVRRSEERRVGEEGR 140 (211)
Q Consensus 67 gri~k~r~~--~~~rg~~~~~~~~g~~fe~Gq~~l~--~PKrGF~n~~~--~~k~y~pvINL~kL~~li~~~~~v~~~~~ 140 (211)
|++++||++ +|+|+. .-..+.-..||+||+|+| +||+||+++.. .+.+|. +|||++|+++++......
T Consensus 1 G~~gkt~grG~kG~~~r-sG~~~~~~~feggq~pl~rr~pK~Gf~~~~~~~~~~~~~-~vnL~~L~~~i~~~~~~~---- 74 (129)
T PF00828_consen 1 GRKGKTRGRGHKGGRGR-SGGHKHRPGFEGGQMPLYRRLPKRGFNNPHLRKNRREYP-PVNLSKLQELIEKLKIDG---- 74 (129)
T ss_dssp SSSSSSSSSSSSSSSSS-TTTSSTSSHHHHHHSHHHHHSSSSSHHHCCHCSGTCCCE-EEEHHHHHHHTTTSSSSS----
T ss_pred CCCCccCcccCCCCCCC-CCCCCCCchhcccccccccccCcccccccccccCcceeE-eeeHHHHHHHHHhccccc----
Confidence 677777766 444432 111223346899999999 99999997432 235777 799999999887643331
Q ss_pred HhhCccceeeccchhhHHHhccceeeec-ccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 141 LLNMNMGIVRSATGRQVLLALTSLLVDI-AGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 141 L~~~Gl~~~~~k~~~~~l~~~gvIdl~~-~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
. .++... ++++.. .+|+||||+|+++ .||+|+|+.||++|+|+||+|||+|++.
T Consensus 75 -----~-----~~~~~~-----~~~~~~~~~~~KvLg~G~l~-~~l~I~a~~~S~~A~ekIe~aGG~v~~~ 129 (129)
T PF00828_consen 75 -----T-----EIDGKI-----LVDAGLIKGYVKVLGKGELT-KPLTIKAHRFSKSAKEKIEAAGGEVVTF 129 (129)
T ss_dssp -----C-----ECTTSE-----EEECCEESSEEEEESSSSSS-SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred -----c-----ccCCce-----eeeccccccceeeeccCCcc-cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 0 112223 334333 3789999999999 9999999999999999999999999873
No 8
>KOG0846|consensus
Probab=99.43 E-value=2.4e-13 Score=120.84 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=75.2
Q ss_pred ceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccce-----echhhHHhhCccceeeccchhhHHHhccc
Q psy9422 91 YFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERR-----VGEEGRLLNMNMGIVRSATGRQVLLALTS 163 (211)
Q Consensus 91 ~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~-----v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv 163 (211)
.||+||+|++ +||.||.+.. ...|. .++|.+|+.+++.+.. ++ +.+|.+.|++ ....
T Consensus 68 GfEgGqtP~yrr~Pk~~~~~~~--~r~~~-pl~L~rlq~lID~grid~~q~Id-m~tL~~~g~i---~p~~--------- 131 (274)
T KOG0846|consen 68 GFEGGQTPLYRRFPKFGFGNGG--RRQYL-PLSLGRLQKLIDTGRIDPSQPID-MKTLKDSGLI---NPKG--------- 131 (274)
T ss_pred ccccCCchhHHhcccccccccc--cccCC-cccHHHHHHHHHhcCCCccCcee-HHHHHhccCC---Cccc---------
Confidence 4999999999 7999999874 47898 5999999999876543 43 5566666643 1111
Q ss_pred eeeecccceEEe--ccccCCCCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422 164 LLVDIAGYYKVL--GKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209 (211)
Q Consensus 164 Idl~~~GyvKVL--G~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~l 209 (211)
.+.| +.+. |.++++ -+|.|+|..+|..|+++||+|||+|..
T Consensus 132 ---~eyG-v~L~~~G~d~~~-~~i~iEvs~aS~~AiaaIEkaGG~vtt 174 (274)
T KOG0846|consen 132 ---REYG-VQLTADGADEFK-AKINIEVSRASVQAIAAIEKAGGSVTT 174 (274)
T ss_pred ---cccC-ceeeccCCcccc-ceEEEEehhhhHHHHHHHHhcCCeEEE
Confidence 1233 5555 456787 899999999999999999999999975
No 9
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=99.41 E-value=1.5e-13 Score=108.95 Aligned_cols=71 Identities=27% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccC
Q psy9422 101 KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRI 180 (211)
Q Consensus 101 ~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeL 180 (211)
+++| |..+ +.+|. +|||++|+.+..++. +++. .+||||+|++
T Consensus 24 v~~r-l~~~---r~~y~-vVNL~~L~~~~~~~~-----------------------------vv~~----~~KVLg~G~l 65 (111)
T PRK04005 24 VAER-LEKP---RRRRA-EVNLSKINRYAKEGD-----------------------------TVVV----PGKVLGSGKL 65 (111)
T ss_pred HHHH-HhCC---CCccc-eEEHHHHHhhccCCC-----------------------------EEEE----eeEEEcCceE
Confidence 5676 5444 36899 799999986542321 1111 2899999999
Q ss_pred CCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 181 PKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 181 s~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
+ ++++|+|+.||++|+++||+|||+|+++
T Consensus 66 ~-k~l~V~a~~~Sk~A~ekIe~aGG~v~~~ 94 (111)
T PRK04005 66 D-HKVTVAALSFSETAKEKIEEAGGKALTI 94 (111)
T ss_pred c-CCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence 9 8999999999999999999999999874
No 10
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.1e-08 Score=82.53 Aligned_cols=61 Identities=34% Similarity=0.394 Sum_probs=49.9
Q ss_pred eEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccH
Q psy9422 115 AFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSK 194 (211)
Q Consensus 115 ~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSk 194 (211)
.++ .|||++|+++..++..+ ++ | -||||.|.+. ++++|-|-.||+
T Consensus 45 ~ra-~VnlsKI~r~ak~~d~v----------vV---------p--------------GkVLg~g~l~-~kVtVaAl~FS~ 89 (122)
T COG1727 45 NRA-EVNVSKINRYAKEGDTV----------VV---------P--------------GKVLGDGKLD-KKVTVAALRFSK 89 (122)
T ss_pred cCC-ceeHHHHHhhcCCCCEE----------EE---------e--------------eeEecCcccc-cceEEEEEecCH
Confidence 556 69999999886543222 11 1 4999999999 999999999999
Q ss_pred HHHHHHHHcCCEEEEc
Q psy9422 195 LAEEKIKAVGGACVLT 210 (211)
Q Consensus 195 sAkEKIEaAGG~V~li 210 (211)
+|.+||++|||+|.-+
T Consensus 90 ~A~~KI~~aGGe~~tl 105 (122)
T COG1727 90 TAREKIEEAGGECLTL 105 (122)
T ss_pred HHHHHHHHcCCeEeeH
Confidence 9999999999999753
No 11
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=98.05 E-value=6.4e-06 Score=70.92 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=34.3
Q ss_pred eEEeccccCC-CCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422 172 YKVLGKGRIP-KQPVIVKAKFFSKLAEEKIKAVGGACVL 209 (211)
Q Consensus 172 vKVLG~GeLs-~kpVtVkA~~fSksAkEKIEaAGG~V~l 209 (211)
-||||+|.|. -.+++|-|-.||++|+++|++|||+|.-
T Consensus 83 GkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT 121 (187)
T PTZ00469 83 GSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLT 121 (187)
T ss_pred eeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEe
Confidence 4999999986 2489999999999999999999999975
No 12
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=98.02 E-value=5.7e-06 Score=71.69 Aligned_cols=37 Identities=38% Similarity=0.472 Sum_probs=34.8
Q ss_pred eEEeccccCCCC--ceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422 172 YKVLGKGRIPKQ--PVIVKAKFFSKLAEEKIKAVGGACVL 209 (211)
Q Consensus 172 vKVLG~GeLs~k--pVtVkA~~fSksAkEKIEaAGG~V~l 209 (211)
-|||++|.|. . +++|-|-.||++|+++|++|||+|..
T Consensus 91 GkVtdd~rl~-~vPkvtVaALrfS~tAr~rI~kAGGe~lT 129 (198)
T PTZ00195 91 GDVLDDVRMA-RIPAMRVCALRFSKSARQSIVAAGGECLT 129 (198)
T ss_pred eeEcCCcccc-ccCceEEEEEecCHHHHHHHHHhCCEEEe
Confidence 4999999998 7 99999999999999999999999975
No 13
>KOG1714|consensus
Probab=84.62 E-value=0.6 Score=40.48 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.8
Q ss_pred cCCCCceEEEEecccHHHHHHHHHcCCEEEE
Q psy9422 179 RIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209 (211)
Q Consensus 179 eLs~kpVtVkA~~fSksAkEKIEaAGG~V~l 209 (211)
+++ ++.|.|-.||+.|.++|++|||+|..
T Consensus 94 ~vP--kl~v~al~~t~~ar~rI~kagg~i~T 122 (188)
T KOG1714|consen 94 EVP--KLKVAALRFTKGARARILKAGGEILT 122 (188)
T ss_pred ecc--cceeeeeecccchhhhhhccCceEEe
Confidence 444 78999999999999999999999864
No 14
>KOG3973|consensus
Probab=42.14 E-value=18 Score=34.82 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=35.7
Q ss_pred hhhhhccceeeeeeeCCCCCCcccceeeeeccccceeeccccccchhhcc---ccccCCCCCCCCCCc
Q psy9422 17 FESWQQEHVKFKTEVGPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLC---ERLKSTPPGPADRKL 81 (211)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~rghvs~~---gri~k~r~~~~~rg~ 81 (211)
.+||||..-.|.-.-|-+ .|.-||.-.++--..+|--.| |+=++|++.++|||+
T Consensus 319 mpswqqqq~~~~~~ggrg-----------ggkg~f~~~~~~~~~~~eqgg~Rgg~Gg~~gGrGgGRGg 375 (465)
T KOG3973|consen 319 MPSWQQQQHTFDRQGGRG-----------GGKGTFDRPKTHEEQVLEQGGSRGGSGGNWGGRGGGRGG 375 (465)
T ss_pred CCcHHHhcCCCCCCCCcC-----------CCCCCCcCccccccchhhccCCCCCCCCCCCCCCCCCCC
Confidence 367877765554433333 344577777777777776655 667789998888874
No 15
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=31.12 E-value=60 Score=30.33 Aligned_cols=71 Identities=20% Similarity=0.090 Sum_probs=47.0
Q ss_pred EEechhhhhhhcccceec--------hhhHHhhCccceeeccchhhHHHhccceee-ecccceEEeccccCCCCceEEEE
Q psy9422 119 VLNMNMGIVRRSEERRVG--------EEGRLLNMNMGIVRSATGRQVLLALTSLLV-DIAGYYKVLGKGRIPKQPVIVKA 189 (211)
Q Consensus 119 vINL~kL~~li~~~~~v~--------~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl-~~~GyvKVLG~GeLs~kpVtVkA 189 (211)
+++.++++.++++..... -.|.|+..|+- ... |+.+.+-|+ ...++++|.|+|.-. ..
T Consensus 114 ~Ls~~eve~Ll~~~~~~~p~~LRdrAmlELLYATGlR----VSE---lv~L~l~dv~~~~~~v~V~GKG~Ke------R~ 180 (300)
T COG4974 114 FLSEEEVEALLEAPDEDTPLGLRDRAMLELLYATGLR----VSE---LVGLTLSDVDLRQGVVRVRGKGNKE------RL 180 (300)
T ss_pred ccCHHHHHHHHhCCCCCCcHhHHHHHHHHHHHHcCCh----HHH---HhcCcHhhhccccCeEEEEccCCce------ee
Confidence 578888887776433211 14678888883 111 555666666 335889999999877 34
Q ss_pred ecccHHHHHHHHH
Q psy9422 190 KFFSKLAEEKIKA 202 (211)
Q Consensus 190 ~~fSksAkEKIEa 202 (211)
--|++.|.+.|++
T Consensus 181 VP~g~~A~~~l~~ 193 (300)
T COG4974 181 VPFGEEAVEALEK 193 (300)
T ss_pred eechHHHHHHHHH
Confidence 4678888888775
No 16
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=21.06 E-value=88 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=21.7
Q ss_pred ccCCCCceEEEEecccHHHHHHHHHcCCE
Q psy9422 178 GRIPKQPVIVKAKFFSKLAEEKIKAVGGA 206 (211)
Q Consensus 178 GeLs~kpVtVkA~~fSksAkEKIEaAGG~ 206 (211)
|++. +|=++.... ..+..+.|+.|||-
T Consensus 6 G~V~-~PG~~~~~~-g~tl~~~i~~AGG~ 32 (59)
T PF10531_consen 6 GEVN-RPGTYELPP-GTTLSDAIAQAGGL 32 (59)
T ss_dssp CSBS-S-EEEEEET-T-BHHHHHHCTTSB
T ss_pred EEeC-CCEEEEECC-CCcHHHHHHHhCCC
Confidence 6788 899999888 77899999999984
No 17
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=20.60 E-value=17 Score=28.87 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=10.8
Q ss_pred eeeccccccchhhcccc
Q psy9422 52 KVHQNRTRQEHVKLCER 68 (211)
Q Consensus 52 ~~~~~r~~rghvs~~gr 68 (211)
.-++|||-|||-|...|
T Consensus 24 ~Hk~NRkeRGhKSPSEr 40 (103)
T PF03263_consen 24 SHKKNRKERGHKSPSER 40 (103)
T ss_dssp HHHHHHHHHT---HHHH
T ss_pred HHHHhHHhcCCCCHHHH
Confidence 34789999999998754
Done!