Query psy9422
Match_columns 211
No_of_seqs 145 out of 1187
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:56:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o58_Y 60S ribosomal protein L 100.0 2.6E-41 8.9E-46 277.3 2.9 137 52-211 4-149 (149)
2 3j21_L 50S ribosomal protein L 100.0 1.2E-39 4E-44 266.5 6.1 131 52-210 4-147 (147)
3 3iz5_O 60S ribosomal protein L 100.0 2.8E-40 9.5E-45 270.0 -3.0 130 52-211 4-144 (144)
4 4a17_K L29, RPL27A, 60S riboso 100.0 3E-39 1E-43 264.8 1.8 135 52-211 4-149 (149)
5 2zkr_l 60S ribosomal protein L 100.0 1.3E-37 4.4E-42 253.6 6.0 135 52-211 4-148 (148)
6 1vq8_L 50S ribosomal protein L 100.0 7.8E-32 2.7E-36 223.6 7.5 134 53-211 2-145 (165)
7 3r8s_L 50S ribosomal protein L 99.9 3.8E-26 1.3E-30 186.1 7.7 96 86-208 45-142 (143)
8 3v2d_P 50S ribosomal protein L 99.9 8.7E-26 3E-30 185.4 9.1 93 91-211 50-149 (150)
9 2zjr_I 50S ribosomal protein L 99.9 3.6E-26 1.2E-30 188.2 1.8 96 90-211 47-144 (156)
10 3bbo_N Ribosomal protein L15; 99.9 2.2E-25 7.4E-30 196.4 -2.8 100 91-210 113-220 (257)
11 3j21_P 50S ribosomal protein L 99.7 1.9E-18 6.6E-23 136.9 2.1 76 96-210 26-103 (120)
12 1vq8_O 50S ribosomal protein L 99.6 1.9E-16 6.6E-21 124.7 3.5 76 95-210 22-99 (116)
13 2zkr_o 60S ribosomal protein L 99.5 1.8E-15 6.3E-20 128.1 1.1 77 98-210 42-123 (188)
14 3jyw_O 60S ribosomal protein L 99.4 2.7E-15 9.3E-20 119.2 -3.0 79 98-210 23-104 (121)
15 3iz5_R 60S ribosomal protein L 99.3 6E-13 2.1E-17 112.7 2.2 78 98-210 43-123 (188)
16 3izc_R 60S ribosomal protein R 99.3 4.8E-13 1.6E-17 113.1 0.7 79 98-210 43-124 (186)
17 4a17_N RPL18, 60S ribosomal pr 99.3 5.7E-13 1.9E-17 112.3 0.2 78 98-210 44-124 (181)
18 1a2x_B Troponin I; muscle cont 23.3 31 0.0011 22.8 1.3 21 6-26 15-35 (47)
19 1cqt_I POU domain, class 2, as 21.5 18 0.00063 23.6 -0.1 10 57-66 33-42 (44)
No 1
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=100.00 E-value=2.6e-41 Score=277.35 Aligned_cols=137 Identities=34% Similarity=0.458 Sum_probs=115.8
Q ss_pred eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCC-CCCCCCceEEeEEec
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFN-IHQRHLTAFSIVLNM 122 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~-n~~~~~k~y~pvINL 122 (211)
+++||||+||||||| |+|++||+||||||+ ||||++|. |.||||+||+ +|...++.|+|+|||
T Consensus 4 r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~--------p~~fGK~G~r~~h~~~n~~~~~~INl 75 (149)
T 3o58_Y 4 RFTKTRKHRGHVSAGKGRIGKHRKHPGGRGMAGGEHHHRINMDKYH--------PGYFGKVGMRYFHKQQAHFWKPVLNL 75 (149)
T ss_dssp SSGGGSSSSSCSSSBTTBSCCSSCSSSSSSSCCCSSSSCCCSCCCT--------TSSSSCCSCCCCCCCCCCCCCCSTTT
T ss_pred cccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEeeeC--------CCccCCCCcccCcccccccccceEEH
Confidence 579999999999999 999999999999996 99998754 4566666666 454456788989999
Q ss_pred hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422 123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA 202 (211)
Q Consensus 123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa 202 (211)
|+||++++++..++ ++. .++++.+| |||+.+.||+||||+|+|+++||+|+|.+||++|+||||+
T Consensus 76 dkL~~lv~~~~~~~---------~a~-~~~~~~~~-----vID~~~~g~vKVLG~G~l~~~~v~Vka~~fS~~A~ekIe~ 140 (149)
T 3o58_Y 76 DKLWTLIPEDKRDQ---------YLK-SASKETAP-----VIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRA 140 (149)
T ss_dssp THHHHCSSCCSCSS---------CTT-SSTTSSCC-----BCCCSSSCSCCCCCCCCCCSCCEEECSSCCTTTTHHHHGG
T ss_pred HHHHHHhHHHHhhh---------hhh-hccCCCCc-----EEEEecccceEEEcCCccCCCCEEEEEeecCHHHHHHHHH
Confidence 99999998876554 430 11246677 9999999999999999993389999999999999999999
Q ss_pred cCCEEEEcC
Q psy9422 203 VGGACVLTA 211 (211)
Q Consensus 203 AGG~V~lia 211 (211)
|||+|+++|
T Consensus 141 aGG~~~~~~ 149 (149)
T 3o58_Y 141 AGGVVELIA 149 (149)
T ss_dssp GSCEEECCC
T ss_pred cCCEEEEcC
Confidence 999999986
No 2
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-39 Score=266.53 Aligned_cols=131 Identities=26% Similarity=0.345 Sum_probs=115.7
Q ss_pred eeeccccccchhhcc-ccccCCCC--CCCCCCc----------eEEEeecCcceecCccccCCCCCCCCCCCCCCceEEe
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL----------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSI 118 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~----------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~k~y~p 118 (211)
+++||||.||||||| |+|++||+ ||||||+ ||||++|. |.++||+||+|+..++.+|.
T Consensus 4 r~~k~rk~rG~~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~--------p~~~pK~GF~n~~~~~~~~~- 74 (147)
T 3j21_L 4 RRKKVRKLRGSHTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYA--------PDHLGKRGFSRPPEVQREVR- 74 (147)
T ss_dssp HHHHHTTTTCCSSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSC--------SCCSCCCSCCCCTTTCCCCC-
T ss_pred cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecC--------CCcCCcCCCCccccccceeE-
Confidence 578999999999999 99999999 9999974 99999876 67899999998754457888
Q ss_pred EEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHH
Q psy9422 119 VLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEE 198 (211)
Q Consensus 119 vINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkE 198 (211)
+|||++||+++++ |.+.|++ +.+++.+ +||+.++| +||||+|+|+ +||+|+|++||++|+|
T Consensus 75 ~VNL~~L~~l~~~---------L~~~gli---~~~~~~~-----vid~~~~G-vKVLG~G~l~-~~v~Vka~~fS~~A~e 135 (147)
T 3j21_L 75 VVNLKFIDEHLDE---------LMQMGIA---YEEGGKI-----IVDVTQFA-DKVLGTGKLT-RPLVIKARAFSPKAEE 135 (147)
T ss_dssp EEEHHHHHHTTTT---------TTTSCCC---SSSSBSE-----EEEGGGGC-CEEECCSCCS-SCEEEEESEECHHHHH
T ss_pred EEEHHHHHHHHHH---------HHHcCcc---cccCCcc-----eecccccC-cEEecCCccC-cCEEEEEEecCHHHHH
Confidence 8999999999753 6677886 3445566 99999999 9999999999 8999999999999999
Q ss_pred HHHHcCCEEEEc
Q psy9422 199 KIKAVGGACVLT 210 (211)
Q Consensus 199 KIEaAGG~V~li 210 (211)
|||+|||+|+++
T Consensus 136 kIeaaGG~v~~~ 147 (147)
T 3j21_L 136 KIKAAGGEAVLV 147 (147)
T ss_dssp HHHHTTCEEEEC
T ss_pred HHHHcCCEEEeC
Confidence 999999999975
No 3
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=100.00 E-value=2.8e-40 Score=269.97 Aligned_cols=130 Identities=32% Similarity=0.411 Sum_probs=111.3
Q ss_pred eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCCC-CCCCCceEEeEEec
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNI-HQRHLTAFSIVLNM 122 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n-~~~~~k~y~pvINL 122 (211)
+++||||+||||||| |+|+|||+||||||+ ||||+++. |.|++|+||++ |...++.|+|+|||
T Consensus 4 r~kKtrK~RG~~s~G~G~~gkhR~h~GGrG~AGg~~Hh~~~~~Ky~--------p~~fGK~G~r~~h~~~n~~~~~~VNl 75 (144)
T 3iz5_O 4 RFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYH--------PGYFGKVGMRYFHRLSNRFHCPAVNV 75 (144)
T ss_dssp SSSSSCCSSSCSTTTTSCCCSSCSCCSCCCSTTTSCCCEEEEETHH--------HHHTSTTCTTSCCCSSCTTSCEEEGG
T ss_pred cccccccccCCCccCCCCCCCCCCCCCCCccccCccceeEEEEeeC--------CCccCCCCccCCCccccccccceEEH
Confidence 579999999999999 999999999999996 99998854 44566666653 44455778889999
Q ss_pred hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccC--CCCceEEEEecccHHHHHHH
Q psy9422 123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRI--PKQPVIVKAKFFSKLAEEKI 200 (211)
Q Consensus 123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeL--s~kpVtVkA~~fSksAkEKI 200 (211)
|+||++++++. . +++++.| |||+.+.||+||||+|+| + +||+|+|++||++|+|||
T Consensus 76 ~kL~~lv~~~~-a---------------~~~~~~~-----vIDl~~~G~~KvLG~G~l~~~-~~v~Vka~~fS~~A~ekI 133 (144)
T 3iz5_O 76 ERLWSMVPAEA-G---------------AGAGKAP-----VIDVTQFGYTKVLGKGMLPPE-RPIVVKAKLISKVAEKKI 133 (144)
T ss_dssp GTSTTCTTSSE-E---------------EEECCSC-----CCSCCEEEESEECHHHHSTTC-TTCCCEECGGGSSCSCCC
T ss_pred HHHHHHhHHhh-h---------------ccCCCce-----EEEeeccCcEEEeCCCccCCc-cCEEEEEeecCHHHHHHH
Confidence 99999997753 1 2344556 999999999999999999 6 999999999999999999
Q ss_pred HHcCCEEEEcC
Q psy9422 201 KAVGGACVLTA 211 (211)
Q Consensus 201 EaAGG~V~lia 211 (211)
|+|||+|+++|
T Consensus 134 e~aGG~v~~~~ 144 (144)
T 3iz5_O 134 KAAGGAVLLTA 144 (144)
T ss_dssp SSCCCCCCCCC
T ss_pred HHcCCEEEEcC
Confidence 99999999876
No 4
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=100.00 E-value=3e-39 Score=264.76 Aligned_cols=135 Identities=34% Similarity=0.462 Sum_probs=113.9
Q ss_pred eeeccccccchhhcc-ccccCCCC--CCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCC-CCCceEEeEE
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPP--GPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQ-RHLTAFSIVL 120 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~--~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~-~~~k~y~pvI 120 (211)
+++||||.||||||| |+|+|||+ ||||||. |+||+++. |.++||+||+++. ..++.|+|+|
T Consensus 4 r~~K~rk~RG~~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~--------p~~fGK~Gfr~~h~~~n~~~~~~V 75 (149)
T 4a17_K 4 HLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWH--------PGYYGKLGMRTFHLKKNPLHCPVV 75 (149)
T ss_dssp GGSHHHHHTTSSSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHS--------TTCSSCCSCCCSSCCCGGGCCCEE
T ss_pred cccccccccCCCccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccC--------CCcCCCCCccCCCccCCcceeeEE
Confidence 578999999999999 99999999 9999986 99998865 6789999998753 3346676799
Q ss_pred echhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHH
Q psy9422 121 NMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKI 200 (211)
Q Consensus 121 NL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKI 200 (211)
|||+||++++++..++ ++ +.++..+ +||+.+.||+||||+|+|+++||+|+|++||++|+|||
T Consensus 76 NLdkL~~l~~~~~~~~---------~~---~~~~~~~-----vId~~~~g~~KvLG~G~l~~~~v~v~a~~fS~~A~~kI 138 (149)
T 4a17_K 76 NIDKLWSLVSDATRQK---------YA---EDKKKVP-----VIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRI 138 (149)
T ss_dssp EGGGHHHHSCHHHHHH---------HH---HCCSSCC-----EEEHHHHTCCEEECCSCCCSSCCEEEESEECHHHHHHH
T ss_pred EHHHHHHHhhhhcchh---------hh---hhcCCce-----EEEeccCCeEEEecCCccCCCCEEEEEeecCHHHHHHH
Confidence 9999999998865443 21 1223334 99999999999999999932899999999999999999
Q ss_pred HHcCCEEEEcC
Q psy9422 201 KAVGGACVLTA 211 (211)
Q Consensus 201 EaAGG~V~lia 211 (211)
|+|||+|+++|
T Consensus 139 e~aGG~~~~~~ 149 (149)
T 4a17_K 139 VAVGGACVLTA 149 (149)
T ss_dssp HHTTCEEEECC
T ss_pred HHcCCEEEEeC
Confidence 99999999986
No 5
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-37 Score=253.59 Aligned_cols=135 Identities=36% Similarity=0.514 Sum_probs=95.2
Q ss_pred eeeccccccchhhcc-ccccCCCCCCCCCCc-------eEEEeecCcceecCccccCCCCCCCCCCCCCC-ceEEeEEec
Q psy9422 52 KVHQNRTRQEHVKLC-ERLKSTPPGPADRKL-------WISMTANGKYFHVGKRSLFKGHHQFNIHQRHL-TAFSIVLNM 122 (211)
Q Consensus 52 ~~~~~r~~rghvs~~-gri~k~r~~~~~rg~-------~~~~~~~g~~fe~Gq~~l~~PKrGF~n~~~~~-k~y~pvINL 122 (211)
+.+|||+.|||+||| |++++||+||||||. |+||+++. |.|+||+||+|++... .+||++|||
T Consensus 4 r~~k~rk~RG~~t~G~G~~gq~r~~~Gg~G~aGgq~h~~~~~~k~~--------p~~lpK~GF~~~~~~~~~~~~~~VNl 75 (148)
T 2zkr_l 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYH--------PGYFGKVGMKHYHLKRNQSFCPTVNL 75 (148)
T ss_dssp --CHHHHTTTTSCSSCCSCSCC--CCSCSSSTTTTTTTCSSCTTTC--------------------------CCCCEEET
T ss_pred ccCCcccCCCCcCcCCCCCCCCCCCCCCCCcccCCCCCEEeccccC--------CCcCCCCCcCCCCccccceecceEEH
Confidence 568999999999999 999999999999985 88888765 5689999999875432 266448999
Q ss_pred hhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEeccccCCCC-ceEEEEecccHHHHHHHH
Q psy9422 123 NMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVLGKGRIPKQ-PVIVKAKFFSKLAEEKIK 201 (211)
Q Consensus 123 ~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~k-pVtVkA~~fSksAkEKIE 201 (211)
++||++++++..++ +. ... +.++++||....+|+||||+|+|+ + ||+|+|++||++|+||||
T Consensus 76 ~~L~~l~~~~~~~~---------~~---~~l----~~~~~vI~~~~~~~vKVLG~Gel~-k~~l~Vka~~fSk~A~ekIe 138 (148)
T 2zkr_l 76 DKPWTLVSEQTRVN---------AA---KNK----TGVAPIIDVVRSGYYKVLGKGKLP-KQPVIVKAKFFSRRAEEKIK 138 (148)
T ss_dssp HHHHHHTTTTTSSC---------TT---TTE----EEHHHHSTTCSSSCCEEECCSCCC-SSCCEEEESEECHHHHHHHH
T ss_pred HHHHhhhhcCcEEe---------hh---hhc----cccCCeEeccccCceEEecCCccc-cCCEEEEEEecCHHHHHHHH
Confidence 99999987765554 21 000 023458888778999999999999 7 999999999999999999
Q ss_pred HcCCEEEEcC
Q psy9422 202 AVGGACVLTA 211 (211)
Q Consensus 202 aAGG~V~lia 211 (211)
+|||+|+++|
T Consensus 139 aAGG~v~~~~ 148 (148)
T 2zkr_l 139 SVGGACVLVA 148 (148)
T ss_dssp HTTCEEEEC-
T ss_pred HcCCEEEecC
Confidence 9999999986
No 6
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=99.97 E-value=7.8e-32 Score=223.63 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=100.7
Q ss_pred eeccccccchhhcc-ccccCCCC--CCCCCCceEEEeecCcceecCccccC-CCCCCCCCCCCCCceEEeEEechhhhhh
Q psy9422 53 VHQNRTRQEHVKLC-ERLKSTPP--GPADRKLWISMTANGKYFHVGKRSLF-KGHHQFNIHQRHLTAFSIVLNMNMGIVR 128 (211)
Q Consensus 53 ~~~~r~~rghvs~~-gri~k~r~--~~~~rg~~~~~~~~g~~fe~Gq~~l~-~PKrGF~n~~~~~k~y~pvINL~kL~~l 128 (211)
++|+||+|||+++| |++||||+ |+|+|+. .|+.-+.++ |++ +||+||+|++..+.+|. +|||++||++
T Consensus 2 ~~k~~k~R~gRg~GsG~~GKt~grGhkGqk~r------aGg~~~~~~-pl~klPK~GF~~~~~~r~~~~-~VNL~~L~~l 73 (165)
T 1vq8_L 2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGD------AGRDKHEFH-NHEPLGKSGFKRPQKVQEEAA-TIDVREIDEN 73 (165)
T ss_dssp CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTT------TTTTTTTCT-TSCCSCCCCCCCCGGGCCCEE-EEEHHHHHHT
T ss_pred CccccCcCCccCCCCCCCCCCCCCCCCCcccc------cCCCcCCCc-eeeECCCCCCccCCcccceee-eEEHHHHHHH
Confidence 57899999999999 99999999 9998875 222222222 544 89999999754456788 8999999999
Q ss_pred hcccceechhhHHhhCccceeecc------chhhHHHhccceeeecccceEEeccccCCCCceEEEEecccHHHHHHHHH
Q psy9422 129 RSEERRVGEEGRLLNMNMGIVRSA------TGRQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKA 202 (211)
Q Consensus 129 i~~~~~v~~~~~L~~~Gl~~~~~k------~~~~~l~~~gvIdl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEa 202 (211)
+++.... |.+ +. .+...|+++|+|. +|+||||+|+|+ +||+|+|++||++|+||||+
T Consensus 74 ~~~~~~~---------g~~---~~~~~~~vId~~~L~~~gli~----~~vKVLG~G~l~-k~l~Vka~~fSk~A~ekIea 136 (165)
T 1vq8_L 74 VTLLAAD---------DVA---EVEDGGFRVDVRDVVEEADDA----DYVKVLGAGQVR-HELTLIADDFSEGAREKVEG 136 (165)
T ss_dssp TGGGTTS---------CCC---C-----CEEEGGGTCTTCTTS----SEEEEECCSCCC-SCCEEEESEECHHHHHHHHH
T ss_pred HHHhhhc---------ccc---ccCCCCeEECHHHHHHCCccC----CceEEecCCccC-CCEEEEEEecCHHHHHHHHH
Confidence 7543222 121 00 1222233444441 789999999999 89999999999999999999
Q ss_pred cCCEEEEcC
Q psy9422 203 VGGACVLTA 211 (211)
Q Consensus 203 AGG~V~lia 211 (211)
|||+|++++
T Consensus 137 AGG~v~~i~ 145 (165)
T 1vq8_L 137 AGGSVELTD 145 (165)
T ss_dssp TTCEEEECT
T ss_pred cCCEEEEee
Confidence 999999875
No 7
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=99.93 E-value=3.8e-26 Score=186.13 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=80.8
Q ss_pred eecCcceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422 86 TANGKYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS 163 (211)
Q Consensus 86 ~~~g~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv 163 (211)
.++| ||+|||||| +||+||+|++ +++|. +|||++|+++. . ..++ +++|.+.|++ ..
T Consensus 45 ~~~g--FEGGQ~Pl~rRlPK~GF~~~~--~~~y~-~VNL~~L~~~~-~-~~I~-~~~L~~~glv---~~----------- 102 (143)
T 3r8s_L 45 VRRG--FEGGQMPLYRRLPKFGFTSRK--AAITA-EIRLSDLAKVE-G-GVVD-LNTLKAANII---GI----------- 102 (143)
T ss_dssp CCTT--CCTTSCCHHHHSCCCCCCCST--GGGEE-ECCSSSSSCSS-S-SEEE-HHHHGGGTSS---CT-----------
T ss_pred CCCc--cccCCCccEEEccccccCCcc--cceeE-EEEHHHhhhcc-C-Ceec-HHHHHHcCcc---cc-----------
Confidence 4445 999999999 8999999974 58999 79999999874 2 4565 7888888886 11
Q ss_pred eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEE
Q psy9422 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACV 208 (211)
Q Consensus 164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~ 208 (211)
. ..+|||||+|+|+ ++|+|+|++||++|+|+||+|||+|+
T Consensus 103 ---~-~~~VKVLg~Gel~-~~l~V~a~~~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 103 ---Q-IEFAKVILAGEVT-TPVTVRGLRVTKGARAAIEAAGGKIE 142 (143)
T ss_dssp ---T-CCEEECCCCSCCC-SCCEEESSCCCHHHHHHHHTTTCEEE
T ss_pred ---C-CCceEEeeCCccc-ccEEEEEEecCHHHHHHHHHcCCEEe
Confidence 1 1249999999999 99999999999999999999999997
No 8
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=99.92 E-value=8.7e-26 Score=185.42 Aligned_cols=93 Identities=26% Similarity=0.253 Sum_probs=80.3
Q ss_pred ceecCccccC--CCCCCCCC-----CCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccc
Q psy9422 91 YFHVGKRSLF--KGHHQFNI-----HQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTS 163 (211)
Q Consensus 91 ~fe~Gq~~l~--~PKrGF~n-----~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gv 163 (211)
.||+|||||| +||+||+| + ++++|. +|||++|+. ++ + .++ +++|.+.|++ ..
T Consensus 50 gFEGGQ~Pl~rRlPK~GF~~~~~~~~--~~~~y~-~VNL~~L~~-~~-G-~I~-~~~L~~~glv---~~----------- 108 (150)
T 3v2d_P 50 RFEGGRSTTLMRLPKRGMQGQVPGEI--KRPRYQ-GVNLKDLAR-FE-G-EVT-PELLVRAGLL---KK----------- 108 (150)
T ss_dssp TCCTTSCCTTTTSCCCSCCCCTTCCC--CCCCEE-EEEHHHHTT-CC-S-EEC-HHHHHTTTSS---CT-----------
T ss_pred cccCCCCccEEEcCccCccCcccccc--ccceEE-EEEHHHHhh-cC-C-ccc-HHHHHHCCCc---cc-----------
Confidence 4999999999 79999999 5 468999 799999998 66 5 676 8888888886 11
Q ss_pred eeeecccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEcC
Q psy9422 164 LLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211 (211)
Q Consensus 164 Idl~~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~lia 211 (211)
.. +|||||+|+|+ +|+|+|++||++|+|+||+|||+|++++
T Consensus 109 ----~~-~VKvLg~G~l~--~v~V~a~~~S~~A~~kIe~aGG~v~~~~ 149 (150)
T 3v2d_P 109 ----GY-RLKILGEGEAK--PLKVVAHAFSKSALEKLKAAGGEPVLLE 149 (150)
T ss_dssp ----TC-EEEEECSSCCC--SCEECBSCBCHHHHHHHHHTTCBCCBCC
T ss_pred ----cc-ceEEEecCCcc--cEEEEEEEcCHHHHHHHHHcCCEEEEec
Confidence 11 49999999998 9999999999999999999999998763
No 9
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=99.91 E-value=3.6e-26 Score=188.24 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=79.6
Q ss_pred cceecCccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeee
Q psy9422 90 KYFHVGKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVD 167 (211)
Q Consensus 90 ~~fe~Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~ 167 (211)
..||+||||+| +||+||+| + +.+|. +|||++||++++.+ ++ +++|.+.++ |+..
T Consensus 47 ~gfEGGQ~Pl~rrlPK~GF~n-~--~~~~~-~VNL~~L~~l~~~~--i~-~~~L~~~gl-----------------i~~~ 102 (156)
T 2zjr_I 47 AFFEGGRSRLIARLPKRGFNN-V--GTTYE-VVKLSQLQDLEDTT--FD-RDTLEAYRL-----------------VRRK 102 (156)
T ss_dssp CSCSCCSSSSTTTSCCCCCCC-C--CCCCC-EECHHHHTTSCCCC--CC-TTTTHHHHH-----------------CCCC
T ss_pred CceEcCcCCCeEecCCCCCcC-C--ceEEE-eechhHHHhhhcCC--cC-HHHHHhCCc-----------------Eecc
Confidence 35999999999 89999998 3 47888 79999999986654 54 455555554 4433
Q ss_pred cccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEcC
Q psy9422 168 IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLTA 211 (211)
Q Consensus 168 ~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~lia 211 (211)
.+++||||+|+|+ +||+|+|++||++|+|+||+|||+|++++
T Consensus 103 -~~~vKVLG~G~l~-~~l~Vka~~fSk~A~ekIEaAGG~v~~i~ 144 (156)
T 2zjr_I 103 -NRPVKLLASGEIS-RAVTVHVDAASAAAIKAVEAAGGRVVLPE 144 (156)
T ss_dssp -SSCCEECCCCCCC-CCCCCCCSEECHHHHHHHGGGSCCCCCCC
T ss_pred -ccceEEeeCCccC-cCeEEEEEecCHHHHHHHHHcCCEEEEee
Confidence 3569999999999 99999999999999999999999998764
No 10
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.89 E-value=2.2e-25 Score=196.40 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=82.8
Q ss_pred ceecCccccC--CCC-CCCCCCCC-CCceEEeEEechhhhhh-hcccceechhhHHhhCccceeeccchhhHHHhcccee
Q psy9422 91 YFHVGKRSLF--KGH-HQFNIHQR-HLTAFSIVLNMNMGIVR-RSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLL 165 (211)
Q Consensus 91 ~fe~Gq~~l~--~PK-rGF~n~~~-~~k~y~pvINL~kL~~l-i~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvId 165 (211)
.||||||||| +|| |||+|++. ++.+|. +|||++||++ ++++..++ ++.|.+.|++ +
T Consensus 113 GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~-~VNL~kL~~lr~~eg~~Id-le~L~~aGlI-----------------~ 173 (257)
T 3bbo_N 113 GFEGGQMPLYRRLPKLRGIAGGMHAGLPKYV-NVNLTDIENAGFQDGEEVS-LETLKAKRVI-----------------N 173 (257)
T ss_dssp TCCSSCSSTTSCCCCCSSCCCCCSSCCSSSS-CSCSSCCSCSSTTTTTTTC-CSSCCSSSCS-----------------S
T ss_pred ceecCCCcchhhcccccccCCccccCcceee-eEeHHHHhhcccCCCCEeC-HHHHHhCCcc-----------------c
Confidence 4999999998 899 99998643 356898 7999999986 77766665 5566666664 3
Q ss_pred ee---cccceEEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 166 VD---IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 166 l~---~~GyvKVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
.. ..+++||||+|+|+ ++|+|+|+.||++|+|+||+|||+|+++
T Consensus 174 ~~gr~~~~~VKVLG~GeLt-kkLtVkA~~fSksA~eKIEaAGG~v~~i 220 (257)
T 3bbo_N 174 PSGRERKLPLKILADGELS-KKLTIKAGAFSTSAKEKLEYAGCSLIVL 220 (257)
T ss_dssp SSCCCCSCCCCCCCSSCCC-SSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred ccccccCccEEEEeCCccC-CCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence 21 24569999999999 9999999999999999999999999875
No 11
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.70 E-value=1.9e-18 Score=136.87 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=63.6
Q ss_pred ccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceE
Q psy9422 96 KRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYK 173 (211)
Q Consensus 96 q~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvK 173 (211)
.+|+| +|||||++. ++|. +|||++|+++++++.. |+. .+|
T Consensus 26 ~~Pl~rrlpKrgF~~r----~~~~-~VnL~~L~~~~~~g~~-----------------------------i~~----~vK 67 (120)
T 3j21_P 26 GVKIWKDVAWRLERPR----RQRA-EVNVSKINRYANDGEM-----------------------------IVV----PGS 67 (120)
T ss_dssp CCSHHHHHHHHHHSCT----TSSE-EEEHHHHTTSSCTTCE-----------------------------EEE----EEE
T ss_pred CCcHHHHHHhhcCCCC----Ccce-eEEHHHHHHHHhcCCE-----------------------------EEE----EEE
Confidence 36877 799999983 6798 7999999988654321 121 289
Q ss_pred EeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 174 VLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 174 VLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
|||+|+++ ++++|+|++||++|+|+||+|||+|+++
T Consensus 68 VLg~G~l~-~kl~V~a~~fS~~A~ekIe~AGG~v~~~ 103 (120)
T 3j21_P 68 VLGAGKLE-KKVIVAAWKFSETARRKIIEAGGEAITI 103 (120)
T ss_dssp EECSSCCC-SCCEEEEEEECHHHHHHHTTTSSCEEES
T ss_pred EcCCCeec-CCEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence 99999999 8999999999999999999999999875
No 12
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.61 E-value=1.9e-16 Score=124.67 Aligned_cols=76 Identities=26% Similarity=0.240 Sum_probs=62.0
Q ss_pred CccccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccce
Q psy9422 95 GKRSLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYY 172 (211)
Q Consensus 95 Gq~~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~Gyv 172 (211)
-|||+| +|||| ++ ++.+|. +|||++|+++++++..+ +| ++
T Consensus 22 ~~~Pl~rRlPKrG--~~--~~~~~~-~VnL~~L~~~~~~g~~i---------------------------lv------~v 63 (116)
T 1vq8_O 22 SGGAVWGDVAERL--EK--PRRTHA-EVNLGRIERYAQEDETV---------------------------VV------PG 63 (116)
T ss_dssp SSCHHHHHHHHHH--TS--CTTTSE-EEEHHHHHHHCCTTSEE---------------------------EE------EE
T ss_pred cCCCHhhhcccCC--CC--CCceee-eEeHHHHHHHccCCCEE---------------------------EE------EE
Confidence 378999 79999 33 247898 79999999876542110 11 48
Q ss_pred EEeccccCCCCceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 173 KVLG~GeLs~kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
||||+|+++ ++++|+|++||++|+|+||+| |+|+++
T Consensus 64 KVLg~G~l~-k~l~V~a~~fSk~A~ekIeaA-G~v~~~ 99 (116)
T 1vq8_O 64 KVLGSGVLQ-KDVTVAAVDFSGTAETKIDQV-GEAVSL 99 (116)
T ss_dssp EEECCSCCC-SCCEEEEEEECHHHHHHHHHH-SEEEEH
T ss_pred EEeeCCeec-CCEEEEEEecCHHHHHHHHHc-CeEEEh
Confidence 999999999 899999999999999999999 999864
No 13
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.51 E-value=1.8e-15 Score=128.09 Aligned_cols=77 Identities=19% Similarity=0.092 Sum_probs=60.4
Q ss_pred ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcc-cceechhhHHhhCccceeeccchhhHHHhccceeeecccceEE
Q psy9422 98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSE-ERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKV 174 (211)
Q Consensus 98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~-~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKV 174 (211)
|++ +|||||+|. .+|. +|||++|+++... +.... + +++ .+||
T Consensus 42 pl~rrlpKRgF~sr----~~y~-~VNLs~L~~~~~~~g~~~~---------i----------------iv~-----~~KV 86 (188)
T 2zkr_o 42 TFNQVVLKRLFMSR----TNRP-PLSLSRMIRKMKLPGRENK---------T----------------AVV-----VGTV 86 (188)
T ss_dssp HHHHHHHHHHHSCT----TTSC-EEEHHHHHSCSSSCCSTTS---------E----------------EEE-----EEEE
T ss_pred CHHHHHHHhhCCCc----ccee-eeeHHHHHHHhhhcCCCCc---------E----------------EEe-----ecEE
Confidence 677 799999982 6898 7999999876411 00000 1 111 1699
Q ss_pred eccccCCCC--ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 175 LGKGRIPKQ--PVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 175 LG~GeLs~k--pVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
||+|+|+ + +++|+|+.||++|+|+||+|||+|+++
T Consensus 87 Lg~GeL~-kvpkLtV~A~~fSksArekIEaAGG~v~~i 123 (188)
T 2zkr_o 87 TDDVRIL-EVPKLKVCALRVSSRARSRILKAGGKILTF 123 (188)
T ss_dssp ECSSCCC-CCSSCCEEEEEECHHHHHHHHHHSSCEEEH
T ss_pred ECCceec-ccCCeEEEEeecCHHHHHHHHHcCCEEEEh
Confidence 9999999 8 999999999999999999999999864
No 14
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=99.44 E-value=2.7e-15 Score=119.22 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=60.3
Q ss_pred ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422 98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL 175 (211)
Q Consensus 98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL 175 (211)
|++ +|||||++. .+|. +|||++|+++++.....+ -+ ++. .+|||
T Consensus 23 pl~rrvpKRgF~sr----~~~~-~VnLs~L~~~~~~~g~~g---------~~---------------vvv-----~~KVl 68 (121)
T 3jyw_O 23 PFNKVVLKALFLSK----INRP-PVSVSRIARALKQEGAAN---------KT---------------VVV-----VGTVT 68 (121)
T ss_dssp HHHHHHHHTTTSCS----TTSC-CBCHHHHHHHTTTTSCSS---------SE---------------EEE-----SSCBC
T ss_pred hHHHHHHHHHCCCC----Cccc-eEEHHHHHHHhhccCCCC---------CE---------------EEE-----EEEEc
Confidence 566 799999984 5888 699999998765210000 00 111 26999
Q ss_pred ccccCCCC-ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 176 GKGRIPKQ-PVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 176 G~GeLs~k-pVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
|+|+++.. +++|+|+.||++|+++||+|||+|+.+
T Consensus 69 g~G~l~~~~kl~V~a~~fS~~A~~kIe~AGG~~~~~ 104 (121)
T 3jyw_O 69 DDARIFEFPKTTVAALRFTAGARAKIVKAGGECITL 104 (121)
T ss_dssp CCSCCCSSSCCCEECSSBCTTTTTHHHHHTCCBCCS
T ss_pred CCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEH
Confidence 99999733 899999999999999999999999764
No 15
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=99.29 E-value=6e-13 Score=112.70 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=60.2
Q ss_pred ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422 98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL 175 (211)
Q Consensus 98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL 175 (211)
|++ ++||+|.+. .+|. +|||++|++++.+.+.. -+ +++ .+|||
T Consensus 43 pf~r~V~KRLf~sr----~~r~-pVnLsrL~r~~k~~e~g----------k~---------------VVv-----~gKVL 87 (188)
T 3iz5_R 43 KFNAVILKRLFMSK----TNRP-PLSMRRLSNFMKGKEEK----------NI---------------AVV-----VGTIT 87 (188)
T ss_dssp HHHHHHHHHHHSCT----TTCC-EEEHHHHHTTSCSSSTT----------CE---------------EEE-----EEEEE
T ss_pred hHHHHHHHHHcCCc----cccC-cccHHHHHHHhccccCC----------CE---------------EEE-----EEEEc
Confidence 555 799999973 4787 69999999887531100 10 222 27999
Q ss_pred ccccCCCC-ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 176 GKGRIPKQ-PVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 176 G~GeLs~k-pVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
|+|+|+.. +++|+|+.||++|+|+||+|||+|+.+
T Consensus 88 g~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~ 123 (188)
T 3iz5_R 88 DDMRIQEVPAMKVTALRFTETARARIINAGGECLTF 123 (188)
T ss_dssp CCCCSSCCSSEEEEEEECCHHHHHHHHTTSEEEEEH
T ss_pred CCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence 99999633 699999999999999999999999874
No 16
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=99.27 E-value=4.8e-13 Score=113.15 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=60.7
Q ss_pred ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422 98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL 175 (211)
Q Consensus 98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL 175 (211)
|++ ++||+|.+. .+|. +|||++|+.++.+....+ -+ ++. .+|||
T Consensus 43 pf~r~V~KRLf~sr----~~r~-~VnLsrI~r~~k~~g~~g---------~~---------------vVv-----~gKVL 88 (186)
T 3izc_R 43 PFNKVVLKALFLSK----INRP-PVSVSRIARALKQEGAAN---------KT---------------VVV-----VGTVT 88 (186)
T ss_dssp HHHHHHHHHHHSCT----TTCC-EEEHHHHHHHTTTTSSSS---------CE---------------EEE-----SSEEE
T ss_pred hHHHHHHHHHhCCC----cccC-cccHHHHHHHhhccCCCC---------CE---------------EEE-----EeEEe
Confidence 555 799999963 5787 699999998876421111 00 111 27999
Q ss_pred ccccCCCC-ceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 176 GKGRIPKQ-PVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 176 G~GeLs~k-pVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
|+|+|+.. +++|+|+.||++|+|+||+|||+|+++
T Consensus 89 g~G~L~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~ 124 (186)
T 3izc_R 89 DDARIFEFPKTTVAALRFTAGARAKIVKAGGECITL 124 (186)
T ss_dssp CCCCSSCCCCEEEEESCCCHHHHHHHHHHSEECCCS
T ss_pred cCceEcccCCEEEEEEecCHHHHHHHHHcCCEEEEH
Confidence 99999733 899999999999999999999999764
No 17
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=99.25 E-value=5.7e-13 Score=112.29 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=59.7
Q ss_pred ccC--CCCCCCCCCCCCCceEEeEEechhhhhhhcccceechhhHHhhCccceeeccchhhHHHhccceeeecccceEEe
Q psy9422 98 SLF--KGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATGRQVLLALTSLLVDIAGYYKVL 175 (211)
Q Consensus 98 ~l~--~PKrGF~n~~~~~k~y~pvINL~kL~~li~~~~~v~~~~~L~~~Gl~~~~~k~~~~~l~~~gvIdl~~~GyvKVL 175 (211)
|++ ++||+|.+. .+|. +|||++|++++.+.+.. - . +++ .+|||
T Consensus 44 pf~r~V~KRLf~sr----~nr~-pVnLsrI~r~~~~~e~g----------k----------~-----vVv-----~gKVL 88 (181)
T 4a17_N 44 KFNQNILKRLSSSR----LNKF-PLSLSRIVKNLNETNKE----------Q----------V-----IVS-----TSTVT 88 (181)
T ss_dssp HHHHHHHHHHSCCG----GGSC-CEEHHHHHHSCCHHHHH----------S----------E-----EEE-----SSEEE
T ss_pred hHHHHHHHHHcCCc----cccC-cccHHHHHHHhccccCC----------C----------E-----EEE-----EEEEc
Confidence 555 799999963 5787 69999999876531100 0 0 212 26999
Q ss_pred ccccCCC-CceEEEEecccHHHHHHHHHcCCEEEEc
Q psy9422 176 GKGRIPK-QPVIVKAKFFSKLAEEKIKAVGGACVLT 210 (211)
Q Consensus 176 G~GeLs~-kpVtVkA~~fSksAkEKIEaAGG~V~li 210 (211)
|+|+|+. .+++|+|..||++|+++||+|||+|+++
T Consensus 89 g~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~ 124 (181)
T 4a17_N 89 NDERLLTVPKLTVCALKFTETARKRILAAGGKCLTF 124 (181)
T ss_dssp CCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECH
T ss_pred CCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEh
Confidence 9999963 3699999999999999999999999864
No 18
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=23.26 E-value=31 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=16.9
Q ss_pred cchhhhHHHHhhhhhhcccee
Q psy9422 6 LPLKSLLLLICFESWQQEHVK 26 (211)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (211)
+-||||+|-++.+-|.+|...
T Consensus 15 ~~LKslmL~~A~~~Le~E~~~ 35 (47)
T 1a2x_B 15 QHLKSVMLQIAATELEKEEGR 35 (47)
T ss_dssp HHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999998653
No 19
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=21.55 E-value=18 Score=23.62 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.3
Q ss_pred ccccchhhcc
Q psy9422 57 RTRQEHVKLC 66 (211)
Q Consensus 57 r~~rghvs~~ 66 (211)
|+||||.|.|
T Consensus 33 rRKRG~~~~~ 42 (44)
T 1cqt_I 33 RRKRGHASSG 42 (44)
T ss_dssp HHTTC-----
T ss_pred HHhhcccccC
Confidence 7889997764
Done!