RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9422
         (211 letters)



>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 1/116 (0%)

Query: 95  GKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRSEERRVGEEGRLLNMNMGIVRSATG 154
           G+    +  H+F+ H+    +               + R + E   LL  +        G
Sbjct: 29  GRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGG 88

Query: 155 RQVLLALTSLLVDIAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
            +V +       D A Y KVLG G++    + + A  FS+ A EK++  GG+  LT
Sbjct: 89  FRVDVRDVVEEADDADYVKVLGAGQVRH-ELTLIADDFSEGAREKVEGAGGSVELT 143


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           KVLG G + K  V V A  FS  AE KI  VG A  L
Sbjct: 63  KVLGSGVLQK-DVTVAAVDFSGTAETKIDQVGEAVSL 98


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 168 IAGYYKVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVL 209
           +   Y++   G    +P+ V A  FSK A EK+KA GG  VL
Sbjct: 102 LKKGYRLKILGEGEAKPLKVVAHAFSKSALEKLKAAGGEPVL 143


>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 32.7 bits (74), Expect = 0.012
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGG 205
           KV+  G +   PV V+    +K A   I+A GG
Sbjct: 106 KVILAGEV-TTPVTVRGLRVTKGARAAIEAAGG 137


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score = 32.6 bits (74), Expect = 0.015
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 173 KVLGKGRIPKQPVIVKAKFFSKLAEEKIKAVGGACVLT 210
           K+L  G I  + V V     S  A + ++A GG  VL 
Sbjct: 104 KLLASGEI-SRAVTVHVDAASAAAIKAVEAAGGRVVLP 140


>d1edqa1 b.1.18.2 (A:24-132) Chitinase A, N-terminal domain N
          {Serratia marcescens [TaxId: 615]}
          Length = 109

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 8/35 (22%)

Query: 32 GPGTPNFKDRRVLIQGTQNFKVHQNRTRQEHVKLC 66
          GP T +         GT NFKV++    Q  V LC
Sbjct: 66 GPSTGS--------SGTANFKVNKGGRYQMQVALC 92


>d1qwta_ b.26.1.3 (A:) Interferon regulatory factor 3 (IRF3),
           transactivation domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 239

 Score = 24.8 bits (54), Expect = 8.8
 Identities = 7/42 (16%), Positives = 12/42 (28%)

Query: 40  DRRVLIQGTQNFKVHQNRTRQEHVKLCERLKSTPPGPADRKL 81
           D    I     F     R+ +  +  C         P  ++L
Sbjct: 133 DLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRL 174


>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId:
           562]}
          Length = 111

 Score = 23.9 bits (51), Expect = 9.9
 Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 80  KLWISMTANGKYFHVGKRSLFKGHHQFNIHQRHLTAFSIVLNMNMGIVRRS-EERRVGEE 138
           +L   +        + ++ +      F    +      +     +   R++ +ERR G  
Sbjct: 29  ELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRG 88

Query: 139 GRLLNMNMGIVRSATGRQVLLAL 161
            RL+ +++ ++     RQ++L L
Sbjct: 89  VRLVGLHVTLLDPQMERQLVLGL 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 765,604
Number of extensions: 33737
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 8
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)