BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9423
         (1346 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
           Its Receptor Decay Accelerating Factor (Cd55) By Cryo
           Electron Microscopy At 16 A
          Length = 316

 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 9   TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 66
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 67  TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 105
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 26  TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 83
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 84  TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 122
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 94  TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 151
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 152 TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 190
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 162 TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 219
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 220 TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 258
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 230 TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 287
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 288 TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 326
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 298 TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 355
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 356 TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 394
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104



 Score = 31.2 bits (69), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 366 TQPTPEGTIKYPEGTTVTQPTPEGTIKYP-EGTTVTQPTPEGTIKYPEGTTVTQPTPEG- 423
            QP  EG   +PE T +T    E  +K P E  +V        +K  + + + +      
Sbjct: 12  AQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVI------CLKGSQWSDIEEFCNRSQ 65

Query: 424 TIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYP 462
               P      QP  EG   +PE T +T    E  +K P
Sbjct: 66  DCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIP 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.301    0.126    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,906,465
Number of Sequences: 62578
Number of extensions: 1658537
Number of successful extensions: 2153
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 48
length of query: 1346
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1235
effective length of database: 8,027,179
effective search space: 9913566065
effective search space used: 9913566065
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 57 (26.6 bits)