Query psy9423
Match_columns 1346
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 46136
Date Fri Aug 16 18:58:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07202 Tcp10_C: T-complex pr 95.6 0.096 2.1E-06 53.8 10.3 42 152-193 86-129 (179)
2 PF07202 Tcp10_C: T-complex pr 93.6 0.48 1E-05 48.8 9.9 7 170-176 32-38 (179)
3 TIGR02331 rib_alpha Rib/alpha/ 24.9 67 0.0014 30.3 2.8 36 120-161 21-58 (80)
4 PF08428 Rib: Rib/alpha-like r 12.4 1.4E+02 0.0031 26.3 1.9 34 120-161 20-55 (65)
5 KOG3206|consensus 8.0 1.7E+02 0.0037 32.3 0.8 20 1-20 150-172 (234)
6 PF05111 Amelin: Ameloblastin 3.3 4E+03 0.086 23.9 7.8 103 929-1042 250-362 (421)
7 COG4642 Uncharacterized protei 3.2 1E+03 0.022 25.0 2.8 42 116-168 46-87 (139)
8 PF13034 DUF3895: Protein of u 2.8 4E+02 0.0086 25.6 -0.5 22 1300-1321 34-55 (78)
9 PF14977 FAM194: FAM194 protei 2.5 3E+03 0.066 22.4 5.5 33 215-247 66-99 (208)
10 PF15366 DUF4597: Domain of un 2.0 1.1E+03 0.024 22.0 1.1 14 73-86 24-37 (62)
No 1
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=95.56 E-value=0.096 Score=53.76 Aligned_cols=42 Identities=36% Similarity=0.710 Sum_probs=18.0
Q ss_pred eEEccCCCcccC-CCCCCceeccCCceee-CCCCCceeeccCCC
Q psy9423 152 TIKYPEGTTVTQ-PTPEGTIKYPEGTTVT-QPTPEGTIKYPEGT 193 (1346)
Q Consensus 152 ~i~yp~gt~~~~-ptp~~ti~yp~gt~~~-~ptp~gti~y~~~~ 193 (1346)
.|.||||+...- +.-.-.+.||.|+++. .+.-.-+|.||.|.
T Consensus 86 eI~fPDGt~k~~~~dG~e~~~fpDGT~~~~~~nG~k~i~~pnGq 129 (179)
T PF07202_consen 86 EIVFPDGTIKYIHPDGREETVFPDGTIVTIDPNGDKTITFPNGQ 129 (179)
T ss_pred EEEeCCCcEEEEeCCCcEEEECCCceEEEEeCCCcEEEEeCCCc
Confidence 455555554322 3333444555555443 22333344444443
No 2
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=93.61 E-value=0.48 Score=48.79 Aligned_cols=7 Identities=29% Similarity=1.236 Sum_probs=3.0
Q ss_pred eeccCCc
Q psy9423 170 IKYPEGT 176 (1346)
Q Consensus 170 i~yp~gt 176 (1346)
|.|+.|.
T Consensus 32 v~f~NGD 38 (179)
T PF07202_consen 32 VRFPNGD 38 (179)
T ss_pred EEEeCCC
Confidence 4444443
No 3
>TIGR02331 rib_alpha Rib/alpha/Esp surface antigen repeat. Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.
Probab=24.89 E-value=67 Score=30.31 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=26.2
Q ss_pred eccCCceeccCCCCceeecCCCCcccCCCCcceE--EccCCCcc
Q psy9423 120 KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI--KYPEGTTV 161 (1346)
Q Consensus 120 ~~pegttvt~~tp~gti~~~~~~t~t~~~~eg~i--~yp~gt~~ 161 (1346)
.||+||+++-..+ ++.+ ++.++...|+| +||||.+.
T Consensus 21 ~lP~GT~~tw~~~-~~pd-----t~~~G~~~~~V~VtyPDGS~d 58 (80)
T TIGR02331 21 DLPDGTTYVWKTV-NTPD-----TNTPGDKPAVVVVTYPDGTKD 58 (80)
T ss_pred cCCCCCEEecccC-CCCc-----cccCCcccceEEEecCCCCCc
Confidence 4688888776554 4555 67888888876 89999754
No 4
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=12.37 E-value=1.4e+02 Score=26.33 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=20.9
Q ss_pred eccCCceeccCCCCceeecCCCCcccCCCCcceE--EccCCCcc
Q psy9423 120 KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI--KYPEGTTV 161 (1346)
Q Consensus 120 ~~pegttvt~~tp~gti~~~~~~t~t~~~~eg~i--~yp~gt~~ 161 (1346)
.||+|+++.-.. ..+ ++.+++..+.| +||||++.
T Consensus 20 ~lP~gt~~~w~~---~pd-----t~~~G~~~~~V~VtypDgS~~ 55 (65)
T PF08428_consen 20 NLPAGTTYSWKD---KPD-----TSKPGTKTGKVKVTYPDGSTD 55 (65)
T ss_pred cCCCCcceeecc---CCc-----cccCccEEEEEEEEcCCCCEE
Confidence 567777764332 222 45566777765 89988764
No 5
>KOG3206|consensus
Probab=7.98 E-value=1.7e+02 Score=32.33 Aligned_cols=20 Identities=40% Similarity=0.798 Sum_probs=15.7
Q ss_pred CCCCCcccc---cCCCCcceeCC
Q psy9423 1 MLGSPCRVT---QPTPEGTIKYP 20 (1346)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~ 20 (1346)
|+|+-|+|+ |+.-+|+|+|-
T Consensus 150 ~vG~rCeVtv~G~~~Rrg~vrYv 172 (234)
T KOG3206|consen 150 AVGRRCEVTVPGQAPRRGTVRYV 172 (234)
T ss_pred ccCCeeEEecCCCCCcceEEEEe
Confidence 689999999 56667777773
No 6
>PF05111 Amelin: Ameloblastin precursor (Amelin); InterPro: IPR007798 This family consists of mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralization. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is thought to have a role in determining the prismatic structure of growing enamel crystals [].; GO: 0030345 structural constituent of tooth enamel, 0042475 odontogenesis of dentine-containing tooth
Probab=3.33 E-value=4e+03 Score=23.86 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=64.2
Q ss_pred CCCCCCCcccccCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCc---ccCCCC-----
Q psy9423 929 TTKYPEGTTVTQPTLGGTTKYSEGATKYPEGTTVTEPTPEGTTKYPEGTTKYPEGTTVTQATPEGT---FKYPEG----- 1000 (1346)
Q Consensus 929 gT~YPEg~T~~~p~~~~~Tgrp~hdtk~P~Gs~~~~dePh~gT~YPEg~tkyP~gst~~~dePh~g---t~YPEG----- 1000 (1346)
+.-|| |+.+-.|.||+.--.|.-.-. -+|++|.|-.++|=||.--+-.+||.+..+.|.+- ---+|+
T Consensus 250 ga~fP-GfgGmr~~lggmP~NPAmgGD----FTlE~DSPvA~tKgPekgeGgaqgsP~~eanp~~~enpall~e~~P~~~ 324 (421)
T PF05111_consen 250 GAMFP-GFGGMRPGLGGMPQNPAMGGD----FTLEFDSPVAGTKGPEKGEGGAQGSPIPEANPANPENPALLPEGAPGAH 324 (421)
T ss_pred hcccc-ccccccccccCCCCCCCcCCc----ceeeccCccccCCCcccccCCCCCCCCCCCCCCCCCCcccccccCcccc
Confidence 34555 345555767766555443332 38999999999999988777788888776655432 112222
Q ss_pred --CcCCCCCCCCCCCCCCCCcccCCCcccCCCCCCcCCCCCCCC
Q psy9423 1001 --TTNYPEGTTVTQPTLGGTTKYSEGATKYPEGTTVTEPTPEGT 1042 (1346)
Q Consensus 1001 --~T~yP~GTt~~q~~~hr~T~YpEG~TKyPegtT~tddeP~~~ 1042 (1346)
.-.+|++.-++ +.|+ |.|-.|-|.+.|+....|--+
T Consensus 325 gGlLafP~~~iP~---larg---PaGq~kgpp~VTPa~AdPlmT 362 (421)
T PF05111_consen 325 GGLLAFPKDNIPN---LARG---PAGQSKGPPGVTPAAADPLMT 362 (421)
T ss_pred cccccCCCCCCcc---cccC---CcccccCCCCCCCCCCCcccC
Confidence 22355554333 4554 777778888888877655433
No 7
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=3.23 E-value=1e+03 Score=24.98 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=29.0
Q ss_pred CceeeccCCceeccCCCCceeecCCCCcccCCCCcceEEccCCCcccCCCCCC
Q psy9423 116 EGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEG 168 (1346)
Q Consensus 116 ~gti~~pegttvt~~tp~gti~~~~~~t~t~~~~eg~i~yp~gt~~~~ptp~~ 168 (1346)
.|..+|-.|.+ .+|+++ |.+.|=+|++.|++|....-|--.+
T Consensus 46 kgs~~~~~G~~-----Y~Gtl~------ngk~nGqG~~~~~ngd~Y~g~F~s~ 87 (139)
T COG4642 46 KGSLKYDNGRI-----YTGTLK------NGKMNGQGTYTFANGDIYEGPFNSG 87 (139)
T ss_pred CccEEEcCCcc-----ccceEE------cCcccCcEEEEecCCCeEeccccCc
Confidence 44455555544 778888 8888999999988777665554444
No 8
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=2.83 E-value=4e+02 Score=25.59 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=17.7
Q ss_pred CCcceeccCCCccccccceecc
Q psy9423 1300 HPEATISTNKPTIYPQTTIGLE 1321 (1346)
Q Consensus 1300 ~~~~~~~~~~~~~~~~~~~~~~ 1321 (1346)
-|..+.||+||-|||+.-.=||
T Consensus 34 ~~~~rysTgKpkiY~~Vc~yLe 55 (78)
T PF13034_consen 34 SPNKRYSTGKPKIYPYVCNYLE 55 (78)
T ss_pred CccccccCCCceeHHHHHHHHH
Confidence 4667889999999999766554
No 9
>PF14977 FAM194: FAM194 protein
Probab=2.55 E-value=3e+03 Score=22.36 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=18.3
Q ss_pred CCCCCceeccCCceeeCCCCCceeec-cCCCccc
Q psy9423 215 PTPEGTIKYPEGTTVTQPTPEGTIKY-PEGTTVT 247 (1346)
Q Consensus 215 ptp~~ti~yp~gt~~~~ptp~gti~y-~~~~~~~ 247 (1346)
+.--|++-|+.|++.-..+.+|=+.+ .+|..|+
T Consensus 66 ~~G~g~~y~~~g~~~l~l~~~gG~~~D~~G~~~k 99 (208)
T PF14977_consen 66 SSGHGTCYHPNGNIWLVLNQEGGQYFDQKGNRVK 99 (208)
T ss_pred CCCCEEEEcCCCCEEEEEECCCCEEEcCCCCEEE
Confidence 34445666666666666666554444 5555443
No 10
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=2.02 E-value=1.1e+03 Score=22.01 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=9.5
Q ss_pred CceeeCCCCCceee
Q psy9423 73 GTTVTQPTPEGTIK 86 (1346)
Q Consensus 73 gt~~~~ptp~gti~ 86 (1346)
.-|+++|||+|..+
T Consensus 24 nIIiTPPTPTg~~l 37 (62)
T PF15366_consen 24 NIIITPPTPTGMML 37 (62)
T ss_pred ceEecCCCCCceec
Confidence 35677777777663
Done!