Query psy9423
Match_columns 1346
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 18:58:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gne_A Val-1; alginate lyase, 2.5 4.2E+02 0.014 28.0 0.6 8 389-396 77-84 (252)
2 3rwa_A Fluorescent protein FP4 2.4 2E+02 0.0068 30.4 -2.0 69 1120-1202 136-204 (233)
3 3e5t_A FP611;, RED fluorescent 2.0 1.9E+02 0.0066 30.5 -2.8 68 1121-1202 80-147 (242)
4 2ejh_A CYAN-emitting GFP-like 1.9 2.6E+02 0.0089 29.8 -2.0 67 1121-1202 100-166 (255)
5 1flt_X FLT-1, VGR1, FMS-like t 1.7 7E+02 0.024 22.2 0.7 13 5-17 26-38 (95)
6 1ym0_B Fibrinotic enzyme compo 1.6 1.3E+03 0.046 17.5 1.9 20 3-22 8-27 (27)
7 2zo6_A CYAN-emitting GFP-like 1.6 3.2E+02 0.011 29.2 -2.0 68 1120-1202 96-163 (252)
8 2gw3_A Kaede; beta barrel, lum 1.6 3.7E+02 0.013 28.1 -1.6 68 1121-1202 68-135 (225)
9 2a50_B ASFP595, GFP-like non-f 1.6 2.5E+02 0.0084 28.2 -2.8 67 1122-1202 6-72 (168)
10 1whm_A Cylindromatosis tumor s 1.5 5.7E+02 0.019 23.8 -0.3 19 1-19 11-31 (92)
No 1
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=2.49 E-value=4.2e+02 Score=28.02 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.3
Q ss_pred ccccCCCC
Q psy9423 389 GTIKYPEG 396 (1346)
Q Consensus 389 ~~~kyp~g 396 (1346)
++++||++
T Consensus 77 Y~V~Fp~~ 84 (252)
T 3gne_A 77 WEVFYPKG 84 (252)
T ss_dssp EEEEBCTT
T ss_pred EEEECCCC
Confidence 34444443
No 2
>3rwa_A Fluorescent protein FP480; GFP-like fluoresent proteins, mkate, circular permutated, FL protein; HET: NRQ; 1.67A {Entacmaea quadricolor} PDB: 3rwt_A*
Probab=2.38 E-value=2e+02 Score=30.36 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=45.3
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCcccc
Q psy9423 1120 GKTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVT 1199 (1346)
Q Consensus 1120 ~gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~ 1199 (1346)
.=++||+||. .-|-..+|+|.+.. |...|-.|+..+ -.++..| +|..+-..-=..++.||...+|-
T Consensus 136 ~F~kYP~~i~-----dyFk~sfpeGys~e-----Rt~~fEDGGv~t---~~~~i~l-eg~~~~~~v~~~G~nFp~dGPVM 201 (233)
T 3rwa_A 136 TFINHTQGIP-----DFFKQSFPEGFTWE-----RVTTYEDGGVLT---ATQDTSL-QDGCLIYNVKIRGVNFPSNGPVM 201 (233)
T ss_dssp TCCBCTTTCC-----CTTGGGTTTCEEEE-----EEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEEECCCTTSTTT
T ss_pred ccccCCCCCC-----CHHHHhCCCCeeEE-----EEEEEcCCcEEE---EEEEEEE-eCCEEEEEEEEEEECCCCCCCcc
Confidence 3478888876 24667788887754 788888887665 3444555 44444444445667778877777
Q ss_pred CCC
Q psy9423 1200 QPT 1202 (1346)
Q Consensus 1200 ~~~ 1202 (1346)
|.+
T Consensus 202 qkk 204 (233)
T 3rwa_A 202 QKK 204 (233)
T ss_dssp TTC
T ss_pred ccc
Confidence 754
No 3
>3e5t_A FP611;, RED fluorescent protein EQFP611; chromophore, luminescence, photoprotein; HET: NRQ; 1.10A {Entacmaea quadricolor} SCOP: d.22.1.1 PDB: 3e5v_A* 1uis_A* 3e5w_A* 3u0l_A* 3u0m_A* 3u0n_A* 3pjb_A* 3pib_A* 4edo_A* 3m22_A* 3pj7_A* 4eds_A* 3t6h_A* 3bxa_A* 3bx9_A* 3bxb_A* 3bxc_A* 3svn_A* 3u8a_A* 3u8c_A* ...
Probab=1.97 E-value=1.9e+02 Score=30.49 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=45.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccC
Q psy9423 1121 KTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQ 1200 (1346)
Q Consensus 1121 gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~ 1200 (1346)
=++||+||. --|-..+|+|.+.. |...|-.|+..+ -.++..| +|..+-..-=..++.||...+|-|
T Consensus 80 F~kYP~~i~-----DyFK~sfPeGys~e-----Rt~~FEDGGv~t---~~~~isl-eg~~~~~~v~~~G~nFP~dGPVMq 145 (242)
T 3e5t_A 80 FIKHTKGIP-----DFFKQSFPEGFTWE-----RVTRYEDGGVFT---VMQDTSL-EDGCLVYHAKVTGTNFPSNGAVMQ 145 (242)
T ss_dssp CCEECTTCC-----CTTGGGTTTCEEEE-----EEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEEECCCTTSTTTT
T ss_pred cccCCCCCC-----cHHHHhCCCCeeEE-----EEEEECCCcEEE---EEEEEEE-eCCEEEEEEEEEEeCCCCCCcccc
Confidence 468888886 23667788887754 888888887765 4455555 444444444556677888888777
Q ss_pred CC
Q psy9423 1201 PT 1202 (1346)
Q Consensus 1201 ~~ 1202 (1346)
.+
T Consensus 146 kk 147 (242)
T 3e5t_A 146 KK 147 (242)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 4
>2ejh_A CYAN-emitting GFP-like protein, kusabira-CYAN (KCY); structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GYS; 1.40A {Fungia concinna} PDB: 2zo6_A* 2eji_A* 2zo7_A*
Probab=1.89 E-value=2.6e+02 Score=29.83 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=43.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccC
Q psy9423 1121 KTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQ 1200 (1346)
Q Consensus 1121 gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~ 1200 (1346)
=++||+||. .-|-..+|+|.+.. |...|-.|+..+ -.++..| +|..+-..-=..+ .||...+|-|
T Consensus 100 F~kYP~~I~-----DyFKqsfPeGYswe-----Rt~~FEDGGv~t---~~~~isl-eg~~~~~~v~~~G-nFP~dGPVMq 164 (255)
T 2ejh_A 100 LTKYPDDIP-----DYFKQCFPGGYSWE-----RKFEFEDGGLAI---AKAEISL-KGNCFEHKSTIEG-TFPDSSPIAQ 164 (255)
T ss_dssp SSBCCTTSC-----CTTGGGTTTCEEEE-----EEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEE-ECCTTCTTTT
T ss_pred cccCCCCCC-----CHHHHhCCCCeeEE-----EEEEECCCcEEE---EEEEEEE-ECCEEEEEEEEEe-eCCCCCcccc
Confidence 478888886 34677788887754 888898887665 4455555 3444444333444 7888777777
Q ss_pred CC
Q psy9423 1201 PT 1202 (1346)
Q Consensus 1201 ~~ 1202 (1346)
.+
T Consensus 165 kk 166 (255)
T 2ejh_A 165 NK 166 (255)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 5
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=1.71 E-value=7e+02 Score=22.18 Aligned_cols=13 Identities=54% Similarity=0.956 Sum_probs=9.5
Q ss_pred CcccccCCCCcce
Q psy9423 5 PCRVTQPTPEGTI 17 (1346)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (1346)
|||||.|.-.=++
T Consensus 26 PC~vTdP~~~VtL 38 (95)
T 1flt_X 26 PCRVTSPNITVTL 38 (95)
T ss_dssp CCCBSCTTSCCEE
T ss_pred EeEcCCCCCcEEE
Confidence 8999988754444
No 6
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=1.60 E-value=1.3e+03 Score=17.48 Aligned_cols=20 Identities=35% Similarity=0.777 Sum_probs=13.3
Q ss_pred CCCcccccCCCCcceeCCCC
Q psy9423 3 GSPCRVTQPTPEGTIKYPEG 22 (1346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (1346)
|.-|.|.|-...|.+..|.|
T Consensus 8 ggqcgvsqysdagdmelppg 27 (27)
T 1ym0_B 8 GGQCGVSQYSDAGDMELPPG 27 (27)
T ss_dssp TSCCSCCSSTTTTCCCCCCC
T ss_pred CCcccceecccccccccCCC
Confidence 55677777777776666544
No 7
>2zo6_A CYAN-emitting GFP-like protein, kusabira-CYAN (KC; luminescent protein, structural genomics, structural genomics/proteomics initiative, RSGI; HET: GYS; 1.40A {Fungia concinna} PDB: 2zo7_A*
Probab=1.59 E-value=3.2e+02 Score=29.15 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=42.2
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCcccc
Q psy9423 1120 GKTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVT 1199 (1346)
Q Consensus 1120 ~gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~ 1199 (1346)
.=++||+||. .-|-.-+|+|.... |...|-.|+..+ -..+..|=.+.-+..-+ ..++ ||...+|-
T Consensus 96 ~F~kYP~~i~-----DyfK~sfPeGyswe-----Rt~~fEDGGv~t---~~~~isleg~~~~~~v~-~~G~-FP~dGPVM 160 (252)
T 2zo6_A 96 CLTKYPDDIP-----DYFKQCFPGGYSWE-----RKFEFEDGGLAI---AKAEISLKGNCFEHKST-IEGT-FPDSSPIA 160 (252)
T ss_dssp TSSBCCTTSC-----CTTGGGTTTCEEEE-----EEEEETTSCEEE---EEEEEEEETTEEEEEEE-EEEE-CCTTCTTT
T ss_pred ecccCCCCcc-----hHHHHhCCCceeEE-----EEEEECCCCEEE---EEEEEEEECCEEEEEEE-EEEE-cCCCCCcc
Confidence 4578999986 36777788888754 888888877654 33344443333322222 3345 78777777
Q ss_pred CCC
Q psy9423 1200 QPT 1202 (1346)
Q Consensus 1200 ~~~ 1202 (1346)
|.+
T Consensus 161 qkk 163 (252)
T 2zo6_A 161 QNK 163 (252)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 8
>2gw3_A Kaede; beta barrel, luminescent protein; HET: CR8; 1.40A {Trachyphyllia geoffroyi} PDB: 1zux_A* 3s05_A* 3p8u_A* 3tmr_A* 3tmt_A* 2vvh_A* 2vvi_A* 2vvj_A* 2btj_A* 2gw4_B* 2ddc_A* 2ddd_A* 2ie2_A* 2z1o_A* 2z6y_A* 2gx2_A* 2gx0_A* 3ls3_A* 3lsa_A* 1xss_A* ...
Probab=1.57 E-value=3.7e+02 Score=28.15 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=45.3
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccC
Q psy9423 1121 KTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQ 1200 (1346)
Q Consensus 1121 gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~ 1200 (1346)
=++||+||.- -|-..+|+|... +|...|-.|+..+ -..+..+ +|..+-+.-=..++.+|...+|-|
T Consensus 68 F~kYP~~i~D-----yFKqsfpeGysw-----eRt~~fEDGGv~t---~~~~i~l-eg~~~~~~~~~~G~nFP~dGPVMq 133 (225)
T 2gw3_A 68 FAKYPDHIPD-----YFKQSFPKGFSW-----ERSLMFEDGGVCI---ATNDITL-KGDTFFNKVRFDGVNFPPNGPVMQ 133 (225)
T ss_dssp SSBCCTTSCC-----TTTTSTTTCEEE-----EEEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEEECCCTTSTTTT
T ss_pred cccCCcccch-----HHHhhCCCCceE-----EEEEEECCCcEEE---EEEEEEE-ECCEEEEEEEEEEECCCCCCCccc
Confidence 4788888852 355667888765 4788888887655 3334444 555555555667777888777777
Q ss_pred CC
Q psy9423 1201 PT 1202 (1346)
Q Consensus 1201 ~~ 1202 (1346)
.+
T Consensus 134 kk 135 (225)
T 2gw3_A 134 KK 135 (225)
T ss_dssp TC
T ss_pred cc
Confidence 65
No 9
>2a50_B ASFP595, GFP-like non-fluorescent chromoprotein FP595 CHAI; ASCP, fluorescent protein, photochromic prote reversible photoswitch; HET: NRQ; 1.30A {Anemonia sulcata} PDB: 2a53_B* 2a54_B* 2a56_B* 2a52_B* 3cfa_A* 3cfh_A* 3cff_A*
Probab=1.55 E-value=2.5e+02 Score=28.25 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccCC
Q psy9423 1122 TKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQP 1201 (1346)
Q Consensus 1122 TeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~~ 1201 (1346)
++||+||.- -|-..+|+|... +|...|-.|+..+ -..+..+ +|..+-+.-=..++.+|...+|-|.
T Consensus 6 ~kYP~~i~D-----yFKqsfpeGysw-----eRt~~fEDGGv~t---~~~~isl-eg~~~~~~v~f~G~nFP~dGPVMqk 71 (168)
T 2a50_B 6 IKYVSGIPD-----YFKQSFPEGFTW-----ERTTTYEDGGFLT---AHQDTSL-DGDCLVYKVKILGNNFPADGPVMQN 71 (168)
T ss_dssp CEECTTCCC-----TTGGGTTTCEEE-----EEEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEEECCCTTSTTTTT
T ss_pred ccCCCCCCC-----HHHHhCCCceeE-----EEEEEECCCcEEE---EEEEEEE-ECCEEEEEEEEEEECCCCCCCcccc
Confidence 578888762 355556888765 4788888777655 2334444 5555555555667778887777766
Q ss_pred C
Q psy9423 1202 T 1202 (1346)
Q Consensus 1202 ~ 1202 (1346)
+
T Consensus 72 k 72 (168)
T 2a50_B 72 K 72 (168)
T ss_dssp C
T ss_pred c
Confidence 5
No 10
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=1.52 E-value=5.7e+02 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=11.5
Q ss_pred CCCCCcccccCC--CCcceeC
Q psy9423 1 MLGSPCRVTQPT--PEGTIKY 19 (1346)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~ 19 (1346)
++|+-|+|...- -.|+|+|
T Consensus 11 ~VG~Rc~V~~~~~~rrGtVrf 31 (92)
T 1whm_A 11 EINSRVSLKVGETIESGTVIF 31 (92)
T ss_dssp CTTCEEEEEETTEEEEEEEEE
T ss_pred cccCeEEEcCCCceeeEEEEE
Confidence 368888886332 3456655
Done!