Query psy9423
Match_columns 1346
No_of_seqs 9 out of 11
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 18:59:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9423.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9423hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fltx_ b.1.1.4 (X:) Second do 1.7 4.5E+02 0.033 21.4 1.5 18 5-22 26-44 (95)
2 d1nyra2 d.15.10.1 (A:4-62) Thr 1.6 4.6E+02 0.034 19.6 1.4 15 1068-1082 4-19 (59)
3 d1ok0a_ b.5.1.1 (A:) alpha-Amy 1.4 3.8E+02 0.027 22.3 0.4 14 4-20 43-56 (74)
4 d1whla_ b.34.10.1 (A:) Cylindr 1.4 4.1E+02 0.03 22.2 0.6 18 2-19 10-31 (95)
5 d1fx0b2 b.49.1.1 (B:19-97) F1 1.3 4.3E+02 0.031 21.7 0.6 14 875-888 11-24 (79)
6 d2rh7a1 d.22.1.1 (A:7-226) Gre 1.3 2.3E+02 0.016 27.2 -1.5 68 1121-1202 66-133 (220)
7 d1tova_ b.34.10.1 (A:) Cytoske 1.2 5.3E+02 0.039 21.6 0.9 19 1-19 16-37 (98)
8 d1ansa_ g.11.1.1 (A:) Neurotox 1.1 7.8E+02 0.057 17.0 1.5 13 591-603 12-24 (27)
9 d1whga_ b.34.10.1 (A:) Tubulin 1.1 4.8E+02 0.035 22.4 0.3 18 2-19 35-55 (113)
10 d1uisa_ d.22.1.1 (A:) Red fluo 1.1 1.9E+02 0.014 27.9 -2.7 68 1121-1202 71-138 (227)
No 1
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.65 E-value=4.5e+02 Score=21.38 Aligned_cols=18 Identities=50% Similarity=0.935 Sum_probs=12.0
Q ss_pred CcccccCCCCcce-eCCCC
Q psy9423 5 PCRVTQPTPEGTI-KYPEG 22 (1346)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~ 22 (1346)
|||||.|.-+=++ +++.+
T Consensus 26 PC~vT~P~~~VtL~~~~~~ 44 (95)
T d1fltx_ 26 PCRVTSPNITVTLKKFPLD 44 (95)
T ss_dssp CCCBSCTTSCCEEEETTTE
T ss_pred EccCCCCCceeEEEeccCC
Confidence 8999998766544 34443
No 2
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=1.61 E-value=4.6e+02 Score=19.58 Aligned_cols=15 Identities=33% Similarity=0.908 Sum_probs=8.4
Q ss_pred cCCCCcc-cCCCCccc
Q psy9423 1068 KYPEGTT-KYPEGTTV 1082 (1346)
Q Consensus 1068 eyPEGtt-KYPqGsTv 1082 (1346)
.+|+|.. .||.|+|+
T Consensus 4 tlPDG~~~~~~~g~T~ 19 (59)
T d1nyra2 4 QFPDGNKKAFDKGTTT 19 (59)
T ss_dssp CCTTSCCCBCCTTCCH
T ss_pred ECCCCCEEEcCCCCCH
Confidence 4566633 56666654
No 3
>d1ok0a_ b.5.1.1 (A:) alpha-Amylase inhibitor tendamistat {Streptomyces tendae [TaxId: 1932]}
Probab=1.39 E-value=3.8e+02 Score=22.29 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=10.4
Q ss_pred CCcccccCCCCcceeCC
Q psy9423 4 SPCRVTQPTPEGTIKYP 20 (1346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (1346)
.|||+.+| |.|.++
T Consensus 43 ~PCr~~~P---G~iTf~ 56 (74)
T d1ok0a_ 43 GLCYAVAP---GQITTV 56 (74)
T ss_dssp CCCEEECT---TCEEEE
T ss_pred ceeeeeCC---CcEecc
Confidence 48999887 667665
No 4
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.37 E-value=4.1e+02 Score=22.25 Aligned_cols=18 Identities=28% Similarity=0.754 Sum_probs=10.8
Q ss_pred CCCCcccccCCCC----cceeC
Q psy9423 2 LGSPCRVTQPTPE----GTIKY 19 (1346)
Q Consensus 2 ~~~~~~~~~~~~~----~~~~~ 19 (1346)
+|+.|+|....-. |+|+|
T Consensus 10 vGs~V~V~~~~g~~~~~G~vry 31 (95)
T d1whla_ 10 VGCPVKVQLRSGEEKFPGVVRF 31 (95)
T ss_dssp SSCEEEEECSSSSCEEEEEEEE
T ss_pred cCCEEEEEecCCCCceeEEEEE
Confidence 5778887654322 56665
No 5
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=1.30 E-value=4.3e+02 Score=21.68 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=9.6
Q ss_pred CCCcccCCCCCCCC
Q psy9423 875 PEGTIKYPEGITVT 888 (1346)
Q Consensus 875 Pv~dsKyP~G~~p~ 888 (1346)
||.|.+||++..|.
T Consensus 11 ~VVDV~F~~~~lP~ 24 (79)
T d1fx0b2 11 PVLNVAFPPGKMPN 24 (79)
T ss_dssp TEEEEECCSSCCCC
T ss_pred ceEEEECCCCCCCC
Confidence 57777777766654
No 6
>d2rh7a1 d.22.1.1 (A:7-226) Green fluorescent protein, GFP {Renilla reniformis [TaxId: 6136]}
Probab=1.29 E-value=2.3e+02 Score=27.24 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccC
Q psy9423 1121 KTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQ 1200 (1346)
Q Consensus 1121 gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~ 1200 (1346)
=++||+||. .-|-..+|+|... +|.-.|-.|+..+ -..+..| +|..+-+.-=..++.||...+|-|
T Consensus 66 F~kYP~~i~-----dyFk~s~p~Gys~-----eRt~~fEDGgv~t---~~~~isl-eg~~~~~~~~f~G~nFP~dGPVMq 131 (220)
T d2rh7a1 66 YTGYPEEIS-----DYFLQSFPEGFTY-----ERNIRYQDGGTAI---VKSDISL-EDGKFIVNVDFKAKDLRRMGPVMQ 131 (220)
T ss_dssp SSBCCTTSC-----CTTGGGTTTCEEE-----EEEEEETTSCEEE---EEEEEEE-C-CCEEEEEEEEEECCCTTSTTTT
T ss_pred cccCCCCCC-----cHHHHhCCCCceE-----EEEEEEcCCCEEE---EEEEEEE-ECCEEEEEEEEEEECCCCCCCccc
Confidence 478888876 3466678888775 4888888886554 2233444 344444555566777888777777
Q ss_pred CC
Q psy9423 1201 PT 1202 (1346)
Q Consensus 1201 ~~ 1202 (1346)
.+
T Consensus 132 kk 133 (220)
T d2rh7a1 132 QD 133 (220)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 7
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=1.18 E-value=5.3e+02 Score=21.62 Aligned_cols=19 Identities=37% Similarity=0.781 Sum_probs=10.4
Q ss_pred CCCCCcccccCC---CCcceeC
Q psy9423 1 MLGSPCRVTQPT---PEGTIKY 19 (1346)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~ 19 (1346)
++|+.|+|.-.- -.|+|+|
T Consensus 16 ~VG~RV~V~~~~~~~~~G~vry 37 (98)
T d1tova_ 16 MVGNRCEVTVGAQMARRGEVAY 37 (98)
T ss_dssp CTTCEEEECCTTSCCEEEEEEE
T ss_pred ccCCEEEEecCCCCceeEEEEE
Confidence 367777775322 1355555
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=1.15 E-value=7.8e+02 Score=16.97 Aligned_cols=13 Identities=46% Similarity=0.849 Sum_probs=8.5
Q ss_pred CCCCccCCCCCcC
Q psy9423 591 PEGTTKYPEGTTK 603 (1346)
Q Consensus 591 Ph~~T~YPEG~Tg 603 (1346)
|-++.-||||-.|
T Consensus 12 pwgqncypegcsg 24 (27)
T d1ansa_ 12 PWGQNCYPEGCSG 24 (27)
T ss_dssp SSSCSSCSSCSSS
T ss_pred ccccccccCcccC
Confidence 5566777777654
No 9
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.08 E-value=4.8e+02 Score=22.42 Aligned_cols=18 Identities=44% Similarity=0.927 Sum_probs=10.1
Q ss_pred CCCCcccccCCC---CcceeC
Q psy9423 2 LGSPCRVTQPTP---EGTIKY 19 (1346)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~~ 19 (1346)
+|+.|+|...-- .|+|+|
T Consensus 35 VG~rv~V~~~~~~~r~G~vry 55 (113)
T d1whga_ 35 VGSRCEVRAPDHSLRRGTVMY 55 (113)
T ss_dssp SSCEEEECCSSSSCEEEEEEE
T ss_pred CCCEEEEEcCCCCceEEEEEE
Confidence 577888754321 355555
No 10
>d1uisa_ d.22.1.1 (A:) Red fluorescent protein fp61 {Sea anemone (Entacmaea quadricolor) [TaxId: 6118]}
Probab=1.08 E-value=1.9e+02 Score=27.87 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=44.5
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcCCCCCCCCcCcccCCCccccCCCCCCCccCCCCccccCCCCCCCccCCCCccccC
Q psy9423 1121 KTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQ 1200 (1346)
Q Consensus 1121 gTeYPEG~t~~~~~P~~~tkYPeG~t~~~~~P~~~tkYseg~t~~~~~P~h~TeyPeG~t~~~~~P~~~TeyP~gt~v~~ 1200 (1346)
=++||+||. .-|-..+|+|.... |.-.|-.|+..+ -..+..| +|..+-+.-=..++.||...+|-|
T Consensus 71 F~kYP~~i~-----dyfk~s~p~Gyswe-----Rt~~fEDGGv~t---~~~~isl-eg~~~~~~~~~~G~nFP~dGPVMq 136 (227)
T d1uisa_ 71 FIKHTKGIP-----DFFKQSFPEGFTWE-----RVTRYEDGGVFT---VMQDTSL-EDGCLVYHAKVTGVNFPSNGAVMQ 136 (227)
T ss_dssp CCEECTTCC-----CTTGGGTTTCEEEE-----EEEEETTSCEEE---EEEEEEE-ETTEEEEEEEEEEECCCTTSTTTT
T ss_pred cccCCCCCC-----CHHHHhCCCCceEE-----EEEEEcCCCEEE---EEEEEEE-ECCEEEEEEEEEEECCCCCCCccc
Confidence 467888884 34666778887754 788888887655 3334444 455555555566777888777776
Q ss_pred CC
Q psy9423 1201 PT 1202 (1346)
Q Consensus 1201 ~~ 1202 (1346)
.+
T Consensus 137 kk 138 (227)
T d1uisa_ 137 KK 138 (227)
T ss_dssp TC
T ss_pred cc
Confidence 54
Done!