RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9423
(1346 letters)
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 48.8 bits (117), Expect = 5e-06
Identities = 49/264 (18%), Positives = 70/264 (26%), Gaps = 73/264 (27%)
Query: 13 PEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI------------KYPEGTTVT 60
P + G TV T P G V G + K G+T T
Sbjct: 2 PSWSPTQASGQTVLPFTGIDFRLSPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT 58
Query: 61 QPTPEGTIKYPEGTTVTQPTPEGT----------IKYPEGTTVTQPTPEGTIKYPEGTTV 110
P + P+G V GT + G+ P + YPEG V
Sbjct: 59 TVLPFNGLYQPQGLAV---DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAV 115
Query: 111 TQPTPEGTI-----------KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI------ 153
+G + K G+ P + P+G V G +
Sbjct: 116 ---DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV---DNSGNVYVTDTD 169
Query: 154 -----KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI-----------KYPEGTTVTQ 197
K + P I P G V GT+ K G+T +
Sbjct: 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAV---DEAGTVYVTEHNTNQVVKLLAGSTTST 226
Query: 198 PTPEGTIKYPEGTTVTQPTPEGTI 221
P + P V + T+
Sbjct: 227 VLPFTGLNTPLAVAV---DSDRTV 247
Score = 48.8 bits (117), Expect = 5e-06
Identities = 49/264 (18%), Positives = 70/264 (26%), Gaps = 73/264 (27%)
Query: 200 PEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI------------KYPEGTTVT 247
P + G TV T P G V G + K G+T T
Sbjct: 2 PSWSPTQASGQTVLPFTGIDFRLSPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT 58
Query: 248 QPTPEGTIKYPEGTTVTQPTPEGT----------IKYPEGTTVTQPTPEGTIKYPEGTTV 297
P + P+G V GT + G+ P + YPEG V
Sbjct: 59 TVLPFNGLYQPQGLAV---DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAV 115
Query: 298 TQPTPEGTI-----------KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI------ 340
+G + K G+ P + P+G V G +
Sbjct: 116 ---DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV---DNSGNVYVTDTD 169
Query: 341 -----KYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI-----------KYPEGTTVTQ 384
K + P I P G V GT+ K G+T +
Sbjct: 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAV---DEAGTVYVTEHNTNQVVKLLAGSTTST 226
Query: 385 PTPEGTIKYPEGTTVTQPTPEGTI 408
P + P V + T+
Sbjct: 227 VLPFTGLNTPLAVAV---DSDRTV 247
Score = 31.4 bits (72), Expect = 1.7
Identities = 26/120 (21%), Positives = 34/120 (28%), Gaps = 28/120 (23%)
Query: 387 PEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTI------------KYPEGTTVT 434
P + G TV T P G V G + K G+T T
Sbjct: 2 PSWSPTQASGQTVLPFTGIDFRLSPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT 58
Query: 435 QPTPEGTIKYPEGTTVTQPTPEGT----------IKYPEGTTVTQPTPEGTIKYPEGTTV 484
P + P+G V GT + G+ P + YPEG V
Sbjct: 59 TVLPFNGLYQPQGLAV---DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAV 115
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 37.1 bits (86), Expect = 0.044
Identities = 30/198 (15%), Positives = 47/198 (23%), Gaps = 7/198 (3%)
Query: 530 PEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQP 589
P V ++ +T G G +G T V+
Sbjct: 480 PGEVGVWAYSATESTPII-GHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAANVVSWS 538
Query: 590 TPEGTTKYPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTKYPEGT 649
+ P + TV + + + Y +T TT +
Sbjct: 539 NNQIVVAVPNVSPGKYN-ITVQSSSGQTSAAYDNFEVLTNDQVSVRFVVNNATTNLGQNI 597
Query: 650 TVTQPTPE-GTTKYSEGTTEYPEGTTVTRPTPEGTTKYSEGTT-EYPEGTTKYPEGATVT 707
+ E G S+ + PT EG T E+ K VT
Sbjct: 598 YIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEF--KFIKKDSQGNVT 655
Query: 708 -QPTPEGTTKYPEGTTVT 724
+ P TT
Sbjct: 656 WESGSNHVYTTPTNTTGK 673
Score = 30.6 bits (69), Expect = 5.0
Identities = 31/242 (12%), Positives = 52/242 (21%), Gaps = 17/242 (7%)
Query: 751 GTTATQPTPEGTTKYPRGTTVTQPTPQVTTKY----PEGTTQTQTTP--EGTIKYPEETT 804
+++ T P GT Q + G+ E + T
Sbjct: 433 SSSSNYSITGLFTALPAGTYTDQLGGLLDGNTIQVGSNGSVNAFDLGPGEVGVWAYSATE 492
Query: 805 KYPE-GTTVTQPTPEGTTKYPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTK 863
P G G +G T T + P +
Sbjct: 493 STPIIGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAANVVSWSNNQIVVAVPNVSPG 552
Query: 864 YPEGTTV------TQPTPEGTIKYPEGITVTQPTPEGTTTYPEGTTVIQTTPEGTTKYPE 917
T + + + ++V TT + ++ E
Sbjct: 553 KYNITVQSSSGQTSAAYDNFEVLTNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTS 612
Query: 918 GTTVTQPTPEGTTKYPEGTTVTQPTLGGTTKYSEGATKYPEGTTVT-EPTPEGTTKYPEG 976
+ + YP G T ++ K VT E P
Sbjct: 613 -KAIGPMFNQVVYSYPTWYIDVSVPEGKTIEF--KFIKKDSQGNVTWESGSNHVYTTPTN 669
Query: 977 TT 978
TT
Sbjct: 670 TT 671
>1ohf_A Nudaurelia capensis omega virus capsid protein; viral coat,
auto-catalytic cleavage, quasiequivalence, NWV,
icosahedral virus; 2.80A {Nudaurelia capensis omega
virus} SCOP: b.121.4.8
Length = 644
Score = 36.2 bits (82), Expect = 0.085
Identities = 52/381 (13%), Positives = 83/381 (21%), Gaps = 3/381 (0%)
Query: 639 PEGTTKYPEGTTVTQPTPEGTTKYSEGTTEYPEGTTVTRPTPEGTTKYSEGTTEYPEGTT 698
P+ + T ++ + + +T PT T
Sbjct: 26 PKQRQARGRRARSRANNIDNVTAAAQELGQSLDANVITFPTNVATMPEFRSWARGKLDID 85
Query: 699 KYPEGATVTQPTPEGTTKYPEGTTVTQPTPEGTLKYPEGTTKYPEGTTKYPEGTTATQPT 758
+ G P G T+ P+G +K+ + P + A+ P
Sbjct: 86 QDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPL 145
Query: 759 PEGTTKYPRGTTVTQPTPQVTTKYPEGTTQTQTTPEGTIKYPEETTKYPEGTTVTQPTPE 818
+ T + + I + + + Q
Sbjct: 146 DGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTF 205
Query: 819 GTTKYPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTKYPEGTTVTQPTPEGT 878
+ T EG + +T+ + P T V Q G
Sbjct: 206 SDDPTWFVRIRVLHPTYDLPDPTEGLLRTVSDYRLTYKSITCEANMP--TLVDQGFWIGG 263
Query: 879 IKYPEGITVTQPTPEGTTTYPEGTTVIQTTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTV 938
I TQ EG+ G T P G + +T
Sbjct: 264 HYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLTWASMPPGGSAPSGDPAWIPDSTT 323
Query: 939 TQPTLGGTTKYSEGATKYPEGTTVTEPTPEGTTKYPEGTTKYPEGTTVTQATPEGTFKYP 998
G G Y T + TT G + T Q T
Sbjct: 324 QFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQ-TGGAAGTNA 382
Query: 999 EGTTNYPEGTTVTQPTLGGTT 1019
T P T T
Sbjct: 383 TITITAPTVTLTILATTTSAA 403
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 34.9 bits (79), Expect = 0.25
Identities = 22/140 (15%), Positives = 31/140 (22%), Gaps = 1/140 (0%)
Query: 745 TTKYPEGTTATQPTPEGTTKYPRGTTVTQPTP-QVTTKYPEGTTQTQTTPEGTIKYPEET 803
T PE + A G +++ Q E T E E
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 804 TKYPEGTTVTQPTPEGTTKYPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTK 863
+ PE T E + E + + P E
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKT 142
Query: 864 YPEGTTVTQPTPEGTIKYPE 883
E E T+K E
Sbjct: 143 EKEVQPDVPKNTEKTLKPKE 162
Score = 34.2 bits (77), Expect = 0.36
Identities = 18/193 (9%), Positives = 41/193 (21%)
Query: 692 EYPEGTTKYPEGATVTQPTPEGTTKYPEGTTVTQPTPEGTLKYPEGTTKYPEGTTKYPEG 751
E V+ + T + + K T + E
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 752 TTATQPTPEGTTKYPRGTTVTQPTPQVTTKYPEGTTQTQTTPEGTIKYPEETTKYPEGTT 811
T K + P+ +T+ PE T + E T
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKT 142
Query: 812 VTQPTPEGTTKYPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTKYPEGTTVT 871
+ P+ + + + E + + ++
Sbjct: 143 EKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNE 202
Query: 872 QPTPEGTIKYPEG 884
+ + E ++
Sbjct: 203 KASKEAKVQALSN 215
Score = 33.8 bits (76), Expect = 0.48
Identities = 24/209 (11%), Positives = 43/209 (20%), Gaps = 9/209 (4%)
Query: 492 TTTYPERTTVTQPTPESTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTT 551
T PE + ++ + K EG + E +
Sbjct: 23 ETAVPENSGANTELVSGESE---------HSTNEADKQNEGEHARENKLEKAEGVATASE 73
Query: 552 VTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTKYPEGTTVT 611
P + E T + + K E + +
Sbjct: 74 TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDES 133
Query: 612 QPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTKYPEGTTVTQPTPEGTTKYSEGTTEYPE 671
+P +E E E T K E E +P + G+
Sbjct: 134 KPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLAS 193
Query: 672 GTTVTRPTPEGTTKYSEGTTEYPEGTTKY 700
T + + + K
Sbjct: 194 RRTGHLVNEKASKEAKVQALSNTNSKAKD 222
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 34.5 bits (79), Expect = 0.31
Identities = 22/114 (19%), Positives = 31/114 (27%)
Query: 487 PTPEGTTTYPERTTVTQPTPESTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKY 546
PT GT T P + G T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 547 PEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEG 600
T+ + + + + P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 34.2 bits (78), Expect = 0.36
Identities = 22/114 (19%), Positives = 30/114 (26%)
Query: 470 PTPEGTIKYPEGTTVTQPTPEGTTTYPERTTVTQPTPESTTKYPEGTTVTQPTPEGTTKY 529
PT GT T P T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 530 PEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEG 583
T+ + + + + P P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 33.8 bits (77), Expect = 0.43
Identities = 23/114 (20%), Positives = 32/114 (28%)
Query: 1133 PTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKY 1192
PT GT T P + G T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 1193 PEGTTVTQPTPEGTTKYPEGTSVTQPTPEGTTKYPELTTITQPTPEGTTKYPEG 1246
T+ + + + + P P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 33.8 bits (77), Expect = 0.52
Identities = 23/114 (20%), Positives = 31/114 (27%)
Query: 436 PTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTTTY 495
PT GT T P G T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 496 PERTTVTQPTPESTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEG 549
T+ + + + + P P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 32.6 bits (74), Expect = 0.94
Identities = 23/114 (20%), Positives = 33/114 (28%)
Query: 839 PTPEGTTKYPEGTTVTHPTPEGTTKYPEGTTVTQPTPEGTIKYPEGITVTQPTPEGTTTY 898
PT GT T + P G T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 899 PEGTTVIQTTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTLGGTTKYSEG 952
T+ + + + + P P G T PT Y+EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 32.6 bits (74), Expect = 1.1
Identities = 21/114 (18%), Positives = 30/114 (26%)
Query: 453 PTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTTTYPERTTVTQPTPESTTKY 512
PT GT T P G T P+ T +P ++ T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 513 PEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEG 566
T+ + + + + P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 31.9 bits (72), Expect = 1.7
Identities = 21/113 (18%), Positives = 31/113 (27%)
Query: 1150 PTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKY 1209
PT GT + T P G T K P+ T +P + T
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 1210 PEGTSVTQPTPEGTTKYPELTTITQPTPEGTTKYPEGTSVTQPTPEGTTKYPE 1262
++ + + + + P P G T PT Y E
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTE 117
Score = 31.1 bits (70), Expect = 3.1
Identities = 22/114 (19%), Positives = 30/114 (26%)
Query: 402 PTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKY 461
PT GT T P G T K P+ T +P +
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64
Query: 462 PEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTTTYPERTTVTQPTPESTTKYPEG 515
T+ + + + + P P G T PT Y EG
Sbjct: 65 AGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEG 118
Score = 30.7 bits (69), Expect = 4.0
Identities = 21/114 (18%), Positives = 29/114 (25%)
Query: 1115 KPTPEGKTKYPEGTTVTQPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTK 1174
PT G T P G A T K + T +P + T
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63
Query: 1175 YPEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTSVTQPTPEGTTKYPE 1228
T+ + + + + P P G T PT Y E
Sbjct: 64 AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTE 117
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.0 bits (77), Expect = 0.32
Identities = 24/123 (19%), Positives = 30/123 (24%), Gaps = 15/123 (12%)
Query: 1132 QPTPEGTTKYPEGTAVTQPTPEGTTKYSEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTK 1191
G P G+ + P+ T+ S+ P T P P
Sbjct: 8 HHHSSGLV--PRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPAAGNPPD 63
Query: 1192 YPEGTTVTQPTPEGTTKYPEGTSVTQPTPEGTTKYPELTTITQPTPEGTTKYPEGTSVTQ 1251
G +V Q G P G T P QP PE P
Sbjct: 64 TVTGDSVLQRILRG----PTGPGTTSLAPAVRYG-------RQPGPEAPASAPPAAGRAV 112
Query: 1252 PTP 1254
P
Sbjct: 113 PGL 115
Score = 31.7 bits (71), Expect = 2.0
Identities = 18/144 (12%), Positives = 29/144 (20%), Gaps = 15/144 (10%)
Query: 872 QPTPEGTIKYPEGITVTQPTPEGTTTYPEGTTVIQTTPEGTTKYPEGTTVTQPTPEGTTK 931
G + + + + + P T P P
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAAL----HPPVTVPDPAPPPPPAPAAGNPPD 63
Query: 932 YPEGTTVTQPTLGGTTKYSEGATKYPEGTTVTEPTPEGTTKYPEGTTKYPEGTTVTQATP 991
G +V Q L G P G T P G
Sbjct: 64 TVTGDSVLQRILRG-----------PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112
Query: 992 EGTFKYPEGTTNYPEGTTVTQPTL 1015
G + +P + V++
Sbjct: 113 PGLYHHPVPEPDPVRVEEVSRRIK 136
Score = 31.3 bits (70), Expect = 2.8
Identities = 22/120 (18%), Positives = 28/120 (23%), Gaps = 13/120 (10%)
Query: 824 PEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTKYPEGTTVTQPTPEGTIKYPE 883
+ P G+ P+ T+ + HP T P P
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPAAGNP----- 61
Query: 884 GITVTQPTPEGTTTYPEGTTVIQTTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTL 943
T G T T T+ P QP PE P P L
Sbjct: 62 --PDTVTGDSVLQRILRGPTGPGT----TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115
Score = 30.5 bits (68), Expect = 3.7
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 8/136 (5%)
Query: 1166 QPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTPEGTTKYPEGTSVTQPTPEGTTK 1225
G P G+ + P+ T+ + P T P P
Sbjct: 8 HHHSSGLV--PRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPAAGNPPD 63
Query: 1226 YPELTTITQPTPEGTTKYPEGTSVTQPTPEGTTKYPESTTITQPTLEGPSITHL--PTTG 1283
++ Q G T GT+ P + + P G ++ L
Sbjct: 64 TVTGDSVLQRILRGPTG--PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1284 TTRYPDFTTVTQISTE 1299
V++
Sbjct: 122 EPDPVRVEEVSRRIKR 137
Score = 30.5 bits (68), Expect = 4.6
Identities = 22/122 (18%), Positives = 29/122 (23%), Gaps = 17/122 (13%)
Query: 452 QPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTTTYPERTTVTQPTPESTTK 511
G + P G+ + P+ T + P T P P
Sbjct: 8 HHHSSGLV--PRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPA------ 57
Query: 512 YPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGT-TKYPEGTTVTQPTPEGTTKYPEGTTVT 570
T + G PT GT + P QP PE P
Sbjct: 58 -AGNPPDTVTGDSVLQRILRG-----PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111
Query: 571 QP 572
P
Sbjct: 112 VP 113
Score = 30.1 bits (67), Expect = 5.7
Identities = 19/120 (15%), Positives = 28/120 (23%), Gaps = 17/120 (14%)
Query: 486 QPTPEGTTTYPERTTVTQPTPESTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGTTK 545
+ P + + P+ T+ + P T P P
Sbjct: 8 HHHS--SGLVPRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPA------ 57
Query: 546 YPEGTTVTQPTPEGTTKYPEGTTVTQPTSEGT-TKYPEGTTVTQPTPEGTTKYPEGTTKY 604
T + G PT GT + P QP PE P +
Sbjct: 58 -AGNPPDTVTGDSVLQRILRG-----PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111
Score = 30.1 bits (67), Expect = 6.2
Identities = 17/105 (16%), Positives = 19/105 (18%), Gaps = 9/105 (8%)
Query: 1125 PEGTTVTQPTPEGTTKYPEGTAVTQPT---PEGTTKYSEGTTVTQPTPEGTTKYPEGTTV 1181
G + A P T P G +V
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 1182 TQPTPEGTTK------YPEGTTVTQPTPEGTTKYPEGTSVTQPTP 1220
Q G T P QP PE P P
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115
Score = 29.3 bits (65), Expect = 8.5
Identities = 20/112 (17%), Positives = 28/112 (25%), Gaps = 10/112 (8%)
Query: 418 QPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEGTIKYPEGTTVTQPTPEG--- 474
G + P G+ + P+ T + P T+ P P
Sbjct: 8 HHHSSGLV--PRGSHMVIPSASVTSAASDFLAALHPPV--TVPDPAPPPPPAPAAGNPPD 63
Query: 475 TIKYPEGTTVTQPTPEGTTT---YPERTTVTQPTPESTTKYPEGTTVTQPTP 523
T+ P G T P QP PE+ P P
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.39
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 23/90 (25%)
Query: 930 TKYPEGTTVTQPTLGG---TTKYSEGATK-YPEGTTVTEPTPEGTTKYPEGTTKYPEGTT 985
P T+ G YS + +G TE + E +T Y
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN---EHSTSY----- 1717
Query: 986 VTQATPEGTFKYPEGTTNYPEGTTVTQPTL 1015
TF+ +G + T TQP L
Sbjct: 1718 --------TFRSEKGLLSA---TQFTQPAL 1736
Score = 32.7 bits (74), Expect = 1.1
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 880 KYPEGITVTQPTPEG---TTTYPEGTTVIQTTPEGTTKYPEGTTVTQPTPEGTTKY---- 932
P +T+ +G Y +T +G K + + + E +T Y
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIF--ETIVDGKLKTEK---IFKEINEHSTSYTFRS 1721
Query: 933 PEG----TTVTQPTL 943
+G T TQP L
Sbjct: 1722 EKGLLSATQFTQPAL 1736
Score = 30.8 bits (69), Expect = 4.2
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 1190 TKYPEGTTVTQPTPEG---TTKYPEGTSVTQPTPEGTTKYPEL-TTITQPTPEGTTKYPE 1245
P T+ +G Y + +G K ++ I + + T + +
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 1246 G----TSVTQP 1252
G T TQP
Sbjct: 1724 GLLSATQFTQP 1734
Score = 30.4 bits (68), Expect = 5.1
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 22/72 (30%)
Query: 1098 TKYPEGTTKYTEGTTGTK-----------PTPEGKTKYPEGTTVTQPTPEGTTKY----P 1142
P T + G G + +GK K + + + E +T Y
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK---IFKEINEHSTSYTFRSE 1722
Query: 1143 EG----TAVTQP 1150
+G T TQP
Sbjct: 1723 KGLLSATQFTQP 1734
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon
metabolism; 2.00A {Methylosinus trichosporium} SCOP:
a.25.1.2 PDB: 1mhz_B
Length = 395
Score = 32.8 bits (74), Expect = 0.79
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 816 TPEGTTKYPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEG--TTKYPEGTTVTQP 873
+ +++ + PE + P ++Y + + QP
Sbjct: 2 SQPQSSQVTKRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQP 61
Query: 874 TPEGTIKYPEGITVTQPTPEGTTTYPEGTTVIQTT 908
P+ + TQ G ++ +T ++TT
Sbjct: 62 NPDWIAGGLDWGDWTQKFHGGRPSWGNESTELRTT 96
Score = 30.9 bits (69), Expect = 2.9
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Query: 468 TQPTPEGTIKYPEGTTVTQPTPEGTTTYPERTTVTQPTPE--STTKYPEGTTVTQPTPEG 525
+ + + PE + +R P ++Y + + QP P+
Sbjct: 6 SSQVTKRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDW 65
Query: 526 TTKYPEGTTVTQPTSEGTTKYPEGTT 551
+ TQ G + +T
Sbjct: 66 IAGGLDWGDWTQKFHGGRPSWGNEST 91
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 30.6 bits (69), Expect = 4.8
Identities = 29/212 (13%), Positives = 44/212 (20%), Gaps = 9/212 (4%)
Query: 515 GTTVTQPTPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEGTTKYPEGTTVTQPTS 574
G G T + T T + G T +G TV T+
Sbjct: 475 GAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTT 534
Query: 575 EGTTKYPEGTTVTQPTPEGTTKYPEGTTKYPEGTTVTQPTSEGTTKYPEGTTVTQPTPEG 634
+ TQ + V + Y ++
Sbjct: 535 AVSGADITSWEDTQIKVKIPA-----VAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSV 589
Query: 635 TTKYPEGTTKYPEGTTVTQPTPE-GTTKYSEGTTEYPEGTTVTRPTPEGTTKYSEGTT-E 692
TT + +T E G ++ P G T E
Sbjct: 590 RFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIE 649
Query: 693 YPEGTTKYPEGATVTQPTPEGTTKYPEGTTVT 724
+ K + T P T T
Sbjct: 650 FK--FLKKQGSTVTWEGGSNHTFTAPSSGTAT 679
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.9 bits (67), Expect = 6.4
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 763 TKYPRGTTVTQPTPQVTTKYPEGTTQTQTTPEGTIKYPEETTKYPEGTTVTQPTPEGTTK 822
+P T Q + T + T+ + + E + Q +
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387
Query: 823 YPEGTTKYPEGTTGTQPTPEGTTKYPEGTTVTHPTPEGTTKYPEG 867
YP P+G P+G P+G P+G
Sbjct: 388 YP------PQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQG 426
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.299 0.124 0.362
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,330,608
Number of extensions: 1361138
Number of successful extensions: 3419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 415
Length of query: 1346
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1241
Effective length of database: 3,770,088
Effective search space: 4678679208
Effective search space used: 4678679208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 63 (28.7 bits)