BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9424
(535 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 237 RCKISCL--ANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGAR 293
RC+I +NPC +A C + + C C PGY G C + D CA+ PC R
Sbjct: 40 RCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCEVNTDECASSPCLHNGR 96
Query: 294 CDNSRGSYKCLCPLGLVG 311
C + ++C CP G G
Sbjct: 97 CLDKINEFQCECPTGFTG 114
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 348 SCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTG----DPET 403
S Q +EC LG NPCE G C +N+L + C C +G+TG
Sbjct: 1 SAQDVDECSLGA--------NPCEHAGKC-INTLGSF-----ECQCLQGYTGPRCEIDVN 46
Query: 404 ECVRITCLSHADCYPGGGS---LCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCG 460
ECV C + A C G +C+ C +TD C+ +PC
Sbjct: 47 ECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD--------------ECASSPCL 92
Query: 461 PNAQCSVANHRPLCSCPAGLMG 482
N +C + C CP G G
Sbjct: 93 HNGRCLDKINEFQCECPTGFTG 114
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 243 LANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARCDNSRGSY 301
L NPC C C C GYTG C + ++ C + PC A C + G +
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNECVSNPCQNDATCLDQIGEF 66
Query: 302 KCLCPLGLVG 311
+C+C G G
Sbjct: 67 QCICMPGYEG 76
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 237 RCKISC--LANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGAR 293
RC+I +NPC +A C + + C C PGY G C + D CA+ PC R
Sbjct: 38 RCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCEVNTDECASSPCLHNGR 94
Query: 294 CDNSRGSYKCLCPLGLVG 311
C + ++C CP G G
Sbjct: 95 CLDKINEFQCECPTGFTG 112
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 35/140 (25%)
Query: 350 QSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTG----DPETEC 405
Q +EC LG NPCE G C +N+L + C C +G+TG EC
Sbjct: 1 QDVDECSLGA--------NPCEHAGKC-INTLGSF-----ECQCLQGYTGPRCEIDVNEC 46
Query: 406 VRITCLSHADCYPGGGS---LCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCGPN 462
V C + A C G +C+ C +TD C+ +PC N
Sbjct: 47 VSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTD--------------ECASSPCLHN 92
Query: 463 AQCSVANHRPLCSCPAGLMG 482
+C + C CP G G
Sbjct: 93 GRCLDKINEFQCECPTGFTG 112
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 243 LANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARCDNSRGSY 301
L NPC C C C GYTG C + ++ C + PC A C + G +
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNECVSNPCQNDATCLDQIGEF 64
Query: 302 KCLCPLGLVG 311
+C+C G G
Sbjct: 65 QCICMPGYEG 74
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 264 YCQPGYTGDAYFGCHLIDFCAAKP--CGPGARCDNSRGSYKCLCPLGLVGDPYGAGCV 319
C GY+ C ID C P C G C N+RGS+KC CP G+ D G C+
Sbjct: 91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGL-CVNTRGSFKCQCPSGMTLDATGRICL 147
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVG 311
D C + PC G C + SY+C CP G G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 281 DFCAAKPCGPGARCDNS-RGSYKC-LCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVK 338
D C + PC PGA+C + GS+ C CP+G +G+ G C +C P C
Sbjct: 1 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN--GTHCEDLDECA----LVPDI-CFS 53
Query: 339 TDGVPKC 345
T VP+C
Sbjct: 54 TSKVPRC 60
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 450 CVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPAL---ECE-ENRQCK 505
C D C CGP C + RP C C GLP+ C A ECE +C+
Sbjct: 60 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCR 119
Query: 506 GEGE--VCADGRCRPLC 520
G + V GRCR C
Sbjct: 120 GHPDLSVMYRGRCRKSC 136
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 281 DFCAAKPCGPGARCDNS-RGSYKC-LCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVK 338
D C + PC PGA+C + GS+ C CP+G +G+ G C +C P C
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN--GTHCEDLDECA----LVPDI-CFS 56
Query: 339 TDGVPKC 345
T VP+C
Sbjct: 57 TSKVPRC 63
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 241 SCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGS 300
CL NN G + +C+ K C C G+ A C ID C P C N G
Sbjct: 4 ECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 61
Query: 301 YKCLCPLGLVGDPYGAGCVSA 321
YKC C G DP+ C +
Sbjct: 62 YKCQCEEGFQLDPHTKACKAV 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 241 SCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGS 300
CL NN G + +C+ K C C G+ A C ID C P C N G
Sbjct: 4 ECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 61
Query: 301 YKCLCPLGLVGDPYGAGC 318
YKC C G DP+ C
Sbjct: 62 YKCQCEEGFQLDPHTKAC 79
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 450 CVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPAL---ECE-ENRQCK 505
C D C CGP C + RP C C GLP+ C A ECE +C+
Sbjct: 69 CKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCR 128
Query: 506 GEGE--VCADGRCRPLC 520
G + V GRCR C
Sbjct: 129 GHPDLSVMYRGRCRKSC 145
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 241 SCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGS 300
CL NN G + +C+ K C C G+ A C ID C P C N G
Sbjct: 7 ECLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 64
Query: 301 YKCLCPLGLVGDPYGAGC 318
YKC C G DP+ C
Sbjct: 65 YKCQCEEGFQLDPHTKAC 82
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 241 SCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGS 300
CL NN G + +C+ K C C G+ A C ID C P C N G
Sbjct: 7 ECLDNNG-GCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGG 64
Query: 301 YKCLCPLGLVGDPYGAGC 318
YKC C G DP+ C
Sbjct: 65 YKCQCEEGFQLDPHTKAC 82
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 292 ARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHC 336
+C N+ GSY+C CP G + ++ ++C D+C G C
Sbjct: 17 GQCINTDGSYRCECPFGYI--------LAGNECVDTDECSVGNPC 53
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSY 301
CL NN G + +C+ K C C G+ A C ID C P C N G Y
Sbjct: 297 CLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGY 354
Query: 302 KCLCPLGLVGDPYGAGC 318
KC C G DP+ C
Sbjct: 355 KCQCEEGFQLDPHTKAC 371
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSY 301
CL NN G + +C+ K C C G+ A C ID C P C N G Y
Sbjct: 315 CLDNNG-GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGY 372
Query: 302 KCLCPLGLVGDPYGAGC 318
KC C G DP+ C
Sbjct: 373 KCQCEEGFQLDPHTKAC 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,102,610
Number of Sequences: 62578
Number of extensions: 778208
Number of successful extensions: 1889
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 400
length of query: 535
length of database: 14,973,337
effective HSP length: 103
effective length of query: 432
effective length of database: 8,527,803
effective search space: 3684010896
effective search space used: 3684010896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)