RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9424
(535 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 49.3 bits (118), Expect = 3e-07
Identities = 15/96 (15%), Positives = 23/96 (23%)
Query: 246 NPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLC 305
C + + C + G C + PC + S C
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPG 106
Query: 306 PLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDG 341
G +P +C G C+ T G
Sbjct: 107 GEGFRPNPITVILEDIDECQELPGLCQGGKCINTFG 142
Score = 47.0 bits (112), Expect = 2e-06
Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 10/124 (8%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKT 339
++ C C N+ GSY C CP +P GCV C
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGD 58
Query: 340 DGVPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTG 399
+G C S + C C+ C + N ++ +C GF
Sbjct: 59 NGDTAC--SNEIGVGVSKASCC----CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRP 112
Query: 400 DPET 403
+P T
Sbjct: 113 NPIT 116
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 238 CKISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAY-FGCHLIDFCAAKPCG-PGARCD 295
C + PC + ++K +C G+ + ID C P G +C
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Query: 296 NSRGSYKCLCPLGLVGDPYGAGC 318
N+ GS++C CP G + C
Sbjct: 139 NTFGSFQCRCPTGYYLNEDTRVC 161
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 46.8 bits (110), Expect = 1e-05
Identities = 28/114 (24%), Positives = 37/114 (32%), Gaps = 2/114 (1%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSY 301
CL NN G + +C+ K C C G+ A C ID C P C N G Y
Sbjct: 3 CLDNN-GGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGY 60
Query: 302 KCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEEC 355
KC C G DP+ C + T + + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
Score = 37.1 bits (85), Expect = 0.011
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 5/112 (4%)
Query: 283 CAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGV 342
C G C++ + Y+CLCP G C +C D C CV +G
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQ--LCVNLEGG 59
Query: 343 PKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCP 394
KC C+ + K + + + P
Sbjct: 60 YKC--QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109
Score = 29.0 bits (64), Expect = 3.9
Identities = 21/104 (20%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 368 NPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPETECVRI-TCLSHADCYPG-----GG 421
N C G + +CN L C CP GF + C I C C GG
Sbjct: 1 NECL-DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59
Query: 422 SLCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCGPNAQC 465
C + C A S + +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 103
Score = 29.0 bits (64), Expect = 4.3
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 10/86 (11%)
Query: 452 DPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPALECEENRQCKGE---- 507
+ C G + C+ C CP G + C EC++ C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA--QRRCEDID--ECQDPDTCSQLCVNL 56
Query: 508 --GEVCADGRCRPLCSSDGGCLSNES 531
G C L C + S
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGS 82
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 42.7 bits (101), Expect = 1e-05
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFG--CHLIDFCAAKPCG-PGARCDNSR 298
C + C C C GY C ID C P G C N+
Sbjct: 6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTE 65
Query: 299 GSYKCLCPLGLVGDPYGAGCV 319
GSY+C CP G P + C+
Sbjct: 66 GSYRCECPPGHQLSPNISACI 86
Score = 31.1 bits (71), Expect = 0.18
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 280 IDFCAAKPCG-PGARCDNSRGSYKCLCPLGLVGDPY-GAGCVSASQCTRDDQCPPGAHCV 337
ID C P +C N+ G ++C C G C+ +C RD G C
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62
Query: 338 KTDG 341
T+G
Sbjct: 63 NTEG 66
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 43.4 bits (103), Expect = 2e-05
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 246 NPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARCDNSRGSYKCL 304
NPC C C C GYTG C + ++ C + PC A C + G ++C+
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 305 CPLGLVGD 312
C G G
Sbjct: 70 CMPGYEGV 77
Score = 28.3 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 277 CHLIDFCA--AKPCGPGARCDNSRGSYKCLCPLGLVGD 312
+D C+ A PC +C N+ GS++C C G G
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 42.0 bits (99), Expect = 7e-05
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 210 SGGPVGCHRVECNS----HADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICYC 265
+ P +E G + + + G + C
Sbjct: 33 TLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPIC 92
Query: 266 QPGYTGDAYFGCHLIDFCAAKPCG-PGARCDNSRGSYKCLCPLGLVGDPYGAGCV 319
GY+ C ID C P C N+RGS+KC CP G+ D G C+
Sbjct: 93 GKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 36.6 bits (85), Expect = 0.005
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKT 339
ID C + PC G C NS GS+ C C DP C+ + T C
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQ-TVIDGRCEIN 61
Query: 340 DGVPKCKASCQSDEECGLGEKCLQGQCNNPCER 372
K+ C S G C Q + C +
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCTLCQVDPICGK 94
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 40.3 bits (95), Expect = 1e-04
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 244 ANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKC 303
+ C C C GY C D C+ C N G ++C
Sbjct: 9 KEPDVCKHGQCINTDGSYRCECPFGYILAG-NECVDTDECSVGNPCGNGTCKNVIGGFEC 67
Query: 304 LCPLGLVGDP 313
C G P
Sbjct: 68 TCEEGFEPGP 77
Score = 28.3 bits (64), Expect = 1.3
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 33/89 (37%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKT 339
+D C +C N+ GSY+C CP G + G CV T
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILA--------------------GNECVDT 44
Query: 340 DGVPKCKASCQSDEECGLGEKCLQGQCNN 368
D EC +G C G C N
Sbjct: 45 D-------------ECSVGNPCGNGTCKN 60
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 43.9 bits (103), Expect = 1e-04
Identities = 42/249 (16%), Positives = 65/249 (26%), Gaps = 26/249 (10%)
Query: 244 ANNPCGPNALCS--AEKHKQICYCQPGYTGDAYFGCHLIDFCAA-----KPCGPGARCDN 296
+NPC P A CS + +C G+ G+ C +D CA RC N
Sbjct: 7 LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKVPRCVN 65
Query: 297 SRGSYKCL-CPLGLVGDPYGAGCVSASQCTR------------DDQCPPGAHCVKTDGVP 343
++ + CL CP G+ + A++ + C A C+
Sbjct: 66 TQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFS 125
Query: 344 KCKASCQSDEEC-GLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPE 402
C+ G G C + + + P D +
Sbjct: 126 DPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFD 185
Query: 403 TECVRITCLSHADCYPGGGSL----CLANLCTRGCSADTDCPAALSCRSAECVDPCSPAP 458
+ + C D L N D +C
Sbjct: 186 KDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDN 245
Query: 459 CGPNAQCSV 467
G CSV
Sbjct: 246 NGEGDACSV 254
Score = 35.0 bits (80), Expect = 0.067
Identities = 35/221 (15%), Positives = 55/221 (24%), Gaps = 21/221 (9%)
Query: 238 CKISCLANNPCGPNALCSAEKHKQICY-CQPGYTGDAYFG------------CHLIDFCA 284
C + C + C C P Y G+ G C + C
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCK 106
Query: 285 --AKPCGPGARCDN----SRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVK 338
C A C S YKC C G GD G S + +
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATY 166
Query: 339 TDGVPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFT 398
C S +E + ++ ++ + R+ +
Sbjct: 167 HCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ-ADYDKDEV 225
Query: 399 GDPETECVRITCLSHAD-CYPGGGSLCLANLCTRGCSADTD 438
GD C + + D G G C ++ + D
Sbjct: 226 GDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERD 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 43.2 bits (101), Expect = 1e-04
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 5/129 (3%)
Query: 241 SCLANNPCGPNALCSAEKHKQICYCQPGYTGDAY-FGCHLIDFCAAKP-CGPGARCDNSR 298
+C NN G C + C C GY C ++ CA + C G C NS
Sbjct: 5 NCNVNN-GGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNSE 61
Query: 299 GSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEECGLG 358
G+++C C G P C + + + E
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIAL 121
Query: 359 EKCLQGQCN 367
+ + +
Sbjct: 122 DFHHRRELV 130
Score = 43.2 bits (101), Expect = 1e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKT 339
+ C G +C RG+ +C C G G C ++C + C C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNS 60
Query: 340 DGVPKCK 346
+G +C
Sbjct: 61 EGAFQCW 67
Score = 30.1 bits (67), Expect = 2.0
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 451 VDPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPALECEENRQC 504
+ C+ G +C + C+C G L C EC E C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYR-LTEDGRTCQDVN--ECAEEGYC 53
Score = 28.2 bits (62), Expect = 8.3
Identities = 18/136 (13%), Positives = 32/136 (23%), Gaps = 8/136 (5%)
Query: 33 NPCEADEVCGRNAECAVVNHTPRCTCVAGTVGDPKYQSGVGTSCTSSRDCIGEQQCISGL 92
C + G +C ++ +CTC G + G +C +C E C S
Sbjct: 4 ENCNVNN-GGCAQKCQMIRGAVQCTCHTG-----YRLTEDGRTCQDVNECAEEGYC-SQG 56
Query: 93 CQPTCRSNTTCPAQHYCNSGLCVLEMQCTTHDQCSATEQCRSNDMGQMQCRPACEGILCG 152
C + C + + + +
Sbjct: 57 CTNS-EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNL 115
Query: 153 RNALCTASDHHATCSC 168
NA+ H
Sbjct: 116 ENAIALDFHHRRELVF 131
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 39.7 bits (93), Expect = 2e-04
Identities = 15/85 (17%), Positives = 23/85 (27%)
Query: 240 ISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRG 299
+ + C + C C C+ G+ G C+ G C G
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG 73
Query: 300 SYKCLCPLGLVGDPYGAGCVSASQC 324
+C C G C A +
Sbjct: 74 WRRCSCAPGYKLGDDLLQCHPAVKF 98
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 42.8 bits (100), Expect = 3e-04
Identities = 54/358 (15%), Positives = 75/358 (20%), Gaps = 53/358 (14%)
Query: 69 QSGVGTSCTSSRDCIGEQQCISGLCQPTCRSNTTCPAQHYCNSGLCVLEMQCTTHDQCSA 128
+GV DC G Q + Q + + + T
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECI-----QEQSFVIRALGFTDIVTVQV 419
Query: 129 TEQCRSNDMGQMQCRPACEGILCGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPSSHS 188
QC Q + R C G C C GY+G +
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLEC---------GICRCDTGYIGKNCEC-----QTQG 465
Query: 189 GHAGGKHGPGLSPGATSHSSHSGGPVG--CHRVECNSHADCSGDKVCEDHRCKISCLANN 246
+ G + S G V C + + CE
Sbjct: 466 RSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQ 525
Query: 247 PCGPNALCSAEKHKQICYCQPGYTGDA---YFGCHLIDFCAAKPCGPGARCDNSRGSYKC 303
CG K C C PG+ G A C RC C
Sbjct: 526 VCGGPGRGLCFCGK--CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR----CNVC 579
Query: 304 LCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQ 363
C G C CP + + C C
Sbjct: 580 ECHSGYQLP----------LCQECPGCPSPCGKYISCAECLKFEKGPFGKNC--SAACPG 627
Query: 364 GQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGD--PETECVRITCLSHADCYPG 419
Q +N + C C +T + + I +C G
Sbjct: 628 LQLSNNPVKGRTCKERDSEG---------CWVAYTLEQQDGMDRYLIYVDESRECVAG 676
Score = 35.1 bits (80), Expect = 0.061
Identities = 50/300 (16%), Positives = 72/300 (24%), Gaps = 35/300 (11%)
Query: 220 ECNSHADCSGDKVCEDHRCKISCLANNPCGPNALC---------SAEKHKQICYCQPGYT 270
DC G ++ ++ A + + C C+
Sbjct: 371 RNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQ 430
Query: 271 GDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQC 330
CH F C RCD C C + + +
Sbjct: 431 SRDRSLCHGKGFLECGIC----RCDTGYIGKNCECQ---TQGRSSQELEGSCRKDNNSII 483
Query: 331 PPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKV 390
G G C S + G+ C N CG +
Sbjct: 484 CSG-LGDCVCGQCLCHTSDVPGKLIY-GQYCECDTINCERYNGQVCGGPGRGLCFCGK-- 539
Query: 391 CFCPRGFTGDP-ETECVRITCLSHADCYPGGGSLCLANLCTRGCSADTDCPAALSCRSAE 449
C C GF G + E CL+ G C N+C C + P C
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCE--CHSGYQLPLCQEC---- 593
Query: 450 CVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPALECEENRQCKGEGE 509
P P+PCG C+ G G + + + R CK
Sbjct: 594 ---PGCPSPCGKYISCA-----ECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDS 645
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 40.5 bits (95), Expect = 5e-04
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 5/99 (5%)
Query: 239 KISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSR 298
+ + + C E++ +C C GYT PCG R
Sbjct: 80 TRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA--DNGKACIPTGPYPCGKQTLERRKR 137
Query: 299 GSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCV 337
+ G D D +
Sbjct: 138 SVAQATSSSGEAPDSI---TWKPYDAADLDPTENPFDLL 173
Score = 35.9 bits (83), Expect = 0.017
Identities = 28/178 (15%), Positives = 37/178 (20%), Gaps = 20/178 (11%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCL 304
C E + + D C PC +C + G Y C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEF--WNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 305 CPLGLVGDPYGAGC-VSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQ 363
C G G C + + D C + C SC K
Sbjct: 67 CLEGFEGK----NCELFTRKLCSLDNGDCDQFCHEEQNSVVC--SCARGYTLADNGKACI 120
Query: 364 GQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPET-----ECVRITCLSHADC 416
PC +Q L G D T + D
Sbjct: 121 PTGPYPCGKQT------LERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDL 172
Score = 29.7 bits (67), Expect = 1.7
Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 1/67 (1%)
Query: 244 ANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKC 303
PCG L ++ G D+ D P + +
Sbjct: 123 GPYPCGKQTLERRKRSVAQATSSSGEAPDS-ITWKPYDAADLDPTENPFDLLDFNQTQPE 181
Query: 304 LCPLGLV 310
L
Sbjct: 182 RGDNNLT 188
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 41.2 bits (97), Expect = 5e-04
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAH-CVKT 339
C ++PC C +S Y C C G G+ C A ++ H C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 340 DGVPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNS 380
C SC G K C +
Sbjct: 62 QESYTC--SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Score = 37.4 bits (87), Expect = 0.009
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 244 ANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKC 303
+ PC N C C C PGY G + + G C + SY C
Sbjct: 9 ISQPCLHNGSCQDSIWGYTCTCSPGYEGSNC-ELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 304 LCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVK 338
C G CV QC
Sbjct: 68 SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 30.8 bits (70), Expect = 0.93
Identities = 19/112 (16%), Positives = 28/112 (25%), Gaps = 14/112 (12%)
Query: 364 GQC-NNPCERQGAC--GVNSLCNVLTHRKVCFCPRGFTGDPETECVRITCLSHADCYPGG 420
C + PC G+C + C C G+ G C H + G
Sbjct: 6 SPCISQPCLHNGSCQDSIWGY--------TCTCSPGYEGS---NCELAKNECHPERTDGC 54
Query: 421 GSLCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCGPNAQCSVANHRP 472
CL + CS + D C+ + P
Sbjct: 55 QHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLP 106
Score = 28.1 bits (63), Expect = 7.0
Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 452 DPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPSANTACVRTPALECEENRQCKGEGEVC 511
PC PC N C + C+C G G + C E G C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG-----SNCELAKNECHPER--TDGCQHFC 58
Query: 512 ADGRCRPLCSSDGGC 526
G+ CS G
Sbjct: 59 LPGQESYTCSCAQGY 73
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 37.9 bits (88), Expect = 0.002
Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 246 NPCGPNALCSAEKHKQICYCQPGYTGDAYF------GCHLIDFCAAK---PCGPGARCDN 296
C ++ C C C PG++ + C I+ CA CG + C N
Sbjct: 7 RWCPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 297 SRGSYKCLCPLGLVGDPYGAGCVSASQCTRDD---------QCPPGAHCVKTDGVPKCK 346
+ GSY C+C G + S+ T D QC C T G C+
Sbjct: 64 TEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCR 122
Score = 36.7 bits (85), Expect = 0.005
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGDAYFG---------CHLIDFCAAKP--CGPGAR 293
CG + C + C C PGY + C +D C++ C
Sbjct: 52 KVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTV 111
Query: 294 CDNSRGSYKCLCPLGLVGDPYGAGCV 319
C N+ GSY C C G
Sbjct: 112 CFNTVGSYSCRCRPGWKPRHGIPNNQ 137
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 37.0 bits (86), Expect = 0.004
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 244 ANNPCGPNALCSAEKHKQ-------ICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARCD 295
NPC C + + +C C G+ G C I+ C +PC G C
Sbjct: 56 TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIH---CQHNINECEVEPCKNGGICT 112
Query: 296 NSRGSYKCLCPLGLVGD 312
+ +Y C CP +G
Sbjct: 113 DLVANYSCECPGEFMGR 129
Score = 27.0 bits (60), Expect = 8.3
Identities = 19/88 (21%), Positives = 23/88 (26%), Gaps = 19/88 (21%)
Query: 244 ANNPCGPNALCSAEKHKQ--ICYCQPGYTGD----------AYFGCHLIDFCAAKPCGPG 291
NPC +C C C G+T C PC G
Sbjct: 4 DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNG 63
Query: 292 ARC-------DNSRGSYKCLCPLGLVGD 312
C ++ Y C CP G G
Sbjct: 64 GTCEISEAYRGDTFIGYVCKCPRGFNGI 91
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 36.5 bits (85), Expect = 0.005
Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCL 304
C E + + D C PC +C + G Y C
Sbjct: 9 ERECMEETCSYEEAREVFEDSDKTNEF--WNKYKDGDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 305 CPLGLVGD 312
C G G
Sbjct: 67 CLEGFEGK 74
Score = 27.6 bits (62), Expect = 5.5
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARC 294
+ + + C E++ +C C GYT PCG
Sbjct: 83 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD---NGKACIPTGPYPCGKQTLE 133
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 38.0 bits (87), Expect = 0.008
Identities = 35/191 (18%), Positives = 48/191 (25%), Gaps = 33/191 (17%)
Query: 289 GPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKAS 348
GPGA G A C AS+C + + +
Sbjct: 3 GPGAAAARRLDESLSA------GSVQRARC--ASRCLS-------LQITRISAFFQHFQN 47
Query: 349 CQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPETECV-- 406
S C ++C +C PC+ G H+ FC F EC+
Sbjct: 48 NGSLVWCQNHKQC--SKCLEPCKESGDL--------RKHQCQSFCEPLF-PKKSYECLTS 96
Query: 407 -----RITCLSHADCYPGGGSLCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCGP 461
I + DC + A C C D +C C S C C
Sbjct: 97 CEFLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLY 156
Query: 462 NAQCSVANHRP 472
Sbjct: 157 KGVPLKPRKEL 167
Score = 38.0 bits (87), Expect = 0.008
Identities = 30/162 (18%), Positives = 46/162 (28%), Gaps = 23/162 (14%)
Query: 237 RCKISCLANNPCGPNALC-SAEKHKQICYCQPGYTGDA-YFGCHLIDFCAAKPCGPGARC 294
RC CL+ +A + + + +CQ C C
Sbjct: 25 RCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEP 84
Query: 295 DNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEE 354
+ SY+CL + + CP + C SC+ D E
Sbjct: 85 LFPKKSYECLT---------SCEFLKYILLVKQGDCPA--PEKASGFAAACVESCEVDNE 133
Query: 355 CGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRG 396
C +KC C+N CG ++ V PR
Sbjct: 134 CSGVKKC----CSN------GCGHTCQVPKTLYKGVPLKPRK 165
Score = 32.2 bits (72), Expect = 0.52
Identities = 34/177 (19%), Positives = 47/177 (26%), Gaps = 33/177 (18%)
Query: 70 SGVGTSCTSSRD-CIGEQQCISGLCQPTCRSNTTCPAQHYCNSGL-CVLEMQCTTHDQCS 127
+G G + D + C C S + + C H QCS
Sbjct: 2 AGPGAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCS 61
Query: 128 A-TEQCR-SNDMGQMQCRPACEGILCGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPS 185
E C+ S D+ + QC+ CE C S
Sbjct: 62 KCLEPCKESGDLRKHQCQSFCE---------PLFPKKSYECLT----------------S 96
Query: 186 SHSGHAGGKHGPGLSPGATSHSSHSGGPVGCHRVECNSHADCSGDKVCEDHRCKISC 242
G P + SG C C +CSG K C + C +C
Sbjct: 97 CEFLKYILLVKQGDCP---APEKASGFAAACVE-SCEVDNECSGVKKCCSNGCGHTC 149
Score = 31.1 bits (69), Expect = 1.1
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 19 PGLASAACVDGRCRNPCE-ADEVCGRNAECAVVNHTPRCTCVAGTVGDPKYQSGVG---- 73
P S +C++ CE + G P+ SG
Sbjct: 66 PCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACV 125
Query: 74 TSCTSSRDCIGEQQCISGLCQPTCRSNTTCP 104
SC +C G ++C S C TC+ T
Sbjct: 126 ESCEVDNECSGVKKCCSNGCGHTCQVPKTLY 156
Score = 30.7 bits (68), Expect = 1.5
Identities = 27/163 (16%), Positives = 44/163 (26%), Gaps = 25/163 (15%)
Query: 355 CGLGEKCLQGQCNNPCERQGA-CGVNSLCNVLTHRKVCFCPRGFTGDPETECVRITCLSH 413
G + + Q A C C L ++ + + C +H
Sbjct: 4 PGAAAARRLDESLSAGSVQRARCASR--CLSLQITRIS-AFFQHFQNNGSLVW---CQNH 57
Query: 414 ADCYPGGGSLCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPC--GPNAQCSVANHR 471
C + C C D E + P C + +
Sbjct: 58 KQC----------SKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVK 107
Query: 472 PLCSCPAGLMGLPSANTACVRTPALECEENRQCKGEGEVCADG 514
CPA A CV + CE + +C G + C++G
Sbjct: 108 Q-GDCPAPEKASGFAAA-CVES----CEVDNECSGVKKCCSNG 144
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 37.2 bits (86), Expect = 0.014
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 267 PGYTGDAYFGCHLIDFC---AAKPCGPGARCDNSR-GSYKCLCPLGLVGDPYGAG 317
PG + FC + C A C R GS C+C +G G+ G
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 35.8 bits (81), Expect = 0.017
Identities = 24/174 (13%), Positives = 38/174 (21%), Gaps = 11/174 (6%)
Query: 238 CKISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGA----- 292
+ S + + N + C C G + C + C + G
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61
Query: 293 ----RCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKAS 348
Y C C G + + C S
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC--S 119
Query: 349 CQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPE 402
C ++ + N +C + C C GFT D E
Sbjct: 120 CAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXE 173
Score = 34.6 bits (78), Expect = 0.038
Identities = 26/176 (14%), Positives = 36/176 (20%), Gaps = 6/176 (3%)
Query: 151 CGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPSSHSGHAGGKHGPGLSPGATSHSSHS 210
N +H C C G V + G +
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXE----TLGXACGEFGQCIENPD 67
Query: 211 GGPVGCHRVECNSHADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICYCQPGYT 270
V + C D D +C + C L + C
Sbjct: 68 PAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPN 127
Query: 271 GDAYFGCHLIDFCAAK--PCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQC 324
+ C A + C N G Y C C G D C+
Sbjct: 128 PEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 28.1 bits (61), Expect = 5.2
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 8/160 (5%)
Query: 327 DDQCPPGAHCVKTDG----VPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLC 382
D V+ + S+ C +C C G C + +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC-IENPD 67
Query: 383 NVLTHRKVCFCPRGFTGDPETECVRITCLSHADCYPGGGSLCLANLCTRGCSADTDC--- 439
+ C C G+T +T + + + L+ + + GCS
Sbjct: 68 PAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPN 127
Query: 440 PAALSCRSAECVDPCSPAPCGPNAQCSVANHRPLCSCPAG 479
P + C N C C C G
Sbjct: 128 PEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEG 167
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 35.6 bits (81), Expect = 0.043
Identities = 58/315 (18%), Positives = 85/315 (26%), Gaps = 18/315 (5%)
Query: 26 CVDGRCRNPCEADEVCGRNAECAVVNHTPRCTCVAGTVGDPKYQSGVGTSCTSSRDCIGE 85
C DG+C VC + +C + + +C T G +Q T C +
Sbjct: 113 CHDGKC---ISRQFVCDSDRDCL--DGSDEASCPVLTCGPASFQCNSSTCIPQLWACDND 167
Query: 86 QQCISGLCQPTCRSNTTCPAQHYCNSGLCV-LEMQCTTHDQCSATEQCRSNDMGQMQCRP 144
C G + +S C E C + + ++ +C G C+
Sbjct: 168 PDCEDGSDEWPQ--RCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD----GGPDCKD 221
Query: 145 ACEGILCGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPSSHSGHAGGKHGPGLSPGAT 204
+ C A+ C G H
Sbjct: 222 KSDEENCA-----VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 276
Query: 205 SHSSHSGGPVGCHRVECNSHADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICY 264
+ G CN DC C + +N G + +C+ K C
Sbjct: 277 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 336
Query: 265 CQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQC 324
C G+ A C ID C P C N G YKC C G DP+ C +
Sbjct: 337 CPDGFQLVAQRRCEDIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Query: 325 TRDDQCPPGAHCVKT 339
T
Sbjct: 396 AYLFFTNRHEVRKMT 410
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.049
Identities = 29/199 (14%), Positives = 50/199 (25%), Gaps = 79/199 (39%)
Query: 277 CHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSAS-------------- 322
H + PG +G+ GLV A ++ +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLV----TAVAIAETDSWESFFVSVRKAI 300
Query: 323 -----------QCTRDDQCPPGAH--CVKTD-GVPKCKASCQSDEECGLGEKCLQ---GQ 365
+ + PP ++ + GVP S L ++ +Q +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-----NLTQEQVQDYVNK 355
Query: 366 CNN--PCERQGACG-VNSLCNVLTHRKVCFCPRGF--TGDPETECVRITCLSHADCYPGG 420
N+ P +Q VN + +G P+
Sbjct: 356 TNSHLPAGKQVEISLVNG-------------AKNLVVSGPPQ------------------ 384
Query: 421 GSLCLANLCTRGCSADTDC 439
SL NL R A +
Sbjct: 385 -SLYGLNLTLRKAKAPSGL 402
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 35.6 bits (81), Expect = 0.053
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 1/73 (1%)
Query: 424 CLANLCTRGCSADTDCPA-ALSCRSAECVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
LA G D P + E + C CSV + + +C C
Sbjct: 162 SLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221
Query: 483 LPSANTACVRTPA 495
+ A
Sbjct: 222 GKDCSQGKEEYIA 234
Score = 35.2 bits (80), Expect = 0.057
Identities = 9/64 (14%), Positives = 12/64 (18%), Gaps = 1/64 (1%)
Query: 260 KQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCP-LGLVGDPYGAGC 318
++ C + C G C C C G G G
Sbjct: 170 GEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGK 229
Query: 319 VSAS 322
Sbjct: 230 EEYI 233
Score = 32.1 bits (72), Expect = 0.49
Identities = 7/52 (13%), Positives = 10/52 (19%)
Query: 276 GCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRD 327
C + PC C + Y C C +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGS 666
Score = 32.1 bits (72), Expect = 0.59
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 444 SCRSAECVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLPS 485
S E PC PC N C +R +C C S
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRS 653
Score = 31.4 bits (70), Expect = 0.97
Identities = 8/40 (20%), Positives = 10/40 (25%), Gaps = 1/40 (2%)
Query: 276 GCHLID-FCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPY 314
GC C C C + C C + P
Sbjct: 1012 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 1051
Score = 29.4 bits (65), Expect = 3.5
Identities = 17/143 (11%), Positives = 25/143 (17%), Gaps = 16/143 (11%)
Query: 166 CSCKPGYVGHPGPSMGTGPSSHSGHAGGKHGPGLSPGATSHSSHSGGPVGCHR------- 218
K V M G + + G R
Sbjct: 103 VEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSS 162
Query: 219 ------VECNSHADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICYCQ-PGYTG 271
D + C +CS + +C C G+ G
Sbjct: 163 LALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRG 222
Query: 272 DAYFGCHLIDFCAAKPCGPGARC 294
+ A G C
Sbjct: 223 KDC--SQGKEEYIATFKGSEYFC 243
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.5 bits (77), Expect = 0.062
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 253 LCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
CS E+ ++I + D CA+ PC G C + SY C C G
Sbjct: 21 QCSFEEAREIFKDAERTKLF-WISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 30.1 bits (69), Expect = 0.10
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D C + PC G C + SY+C CP G G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 32.0 bits (73), Expect = 0.12
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 263 CYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDP 313
C C GY D F C ID C C N G+++C+C
Sbjct: 63 CECPEGYILDDGFICTDIDECEN-GGFCSGVCHNLPGTFECICGPDSALAG 112
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 33.5 bits (76), Expect = 0.15
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCL 304
+P + + + + +C+ + GC + C P + + + C
Sbjct: 250 LSPEDMVLFHNLTQPRGVNWCERTTLSNG--GCQYL-------CLPAPQINPHSPKFTCA 300
Query: 305 CPLGLVGDPYGAGCVS 320
CP G++ C++
Sbjct: 301 CPDGMLLARDMRSCLT 316
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 31.5 bits (72), Expect = 0.17
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 263 CYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLG 308
G + C G C++ + Y+CLCP G
Sbjct: 15 IPTTENLYFQ---GAMGTNECLDNNGGCSYVCNDLKIGYECLCPDG 57
Score = 31.1 bits (71), Expect = 0.24
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 263 CYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
C C G+ A C ID C P C N G YKC C G DP+ C
Sbjct: 52 CLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 31.3 bits (71), Expect = 0.17
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 263 CYCQPGYTGDAYFGCHLIDFCAAKPCGPGARC--DNSRGSYKCLCPLGLVGD 312
C+C G + C+ C G C + C CP G G
Sbjct: 34 CWCNSGRAQCH---SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 30.7 bits (70), Expect = 0.22
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDA-YFGCHLIDFCAAKPCGPGARCDNSRGS 300
C A+C C C GY + C ID C+ C C N G
Sbjct: 6 CSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC--AQLCVNYPGG 63
Query: 301 YKCLC 305
Y C C
Sbjct: 64 YTCYC 68
Score = 26.9 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 280 IDFCAAKPCG-PGARCDNSRGSYKCLCPLGLVGDPYGAGCV 319
+D C+ KP A C N G ++C CP G + C
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 33.1 bits (75), Expect = 0.22
Identities = 50/325 (15%), Positives = 77/325 (23%), Gaps = 46/325 (14%)
Query: 73 GTSCTSSRDCIGEQQCISGLCQPTCRSNTTCPAQHYCNSGLCVLEMQCTTHDQCSATEQC 132
+ C+G + + CP + + + + + + Q + C
Sbjct: 377 NEVIPGLKSCMGLKIGDTVSFSIEA-KVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDC 435
Query: 133 RSNDMGQMQCRPACEGILCGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPSSHSGHAG 192
+ G C C PG++G S
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECG---------VCRCGPGWLGSQ--------CECSEEDY 478
Query: 193 GKHGPGLSPGATSHSSHSGGPVGCHRVECNSHADCSGD---KVCEDHRCKISCLANNPCG 249
S C +C H+ G K CE C
Sbjct: 479 RPSQQDECSPREGQPVCSQRGE-CLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCS 537
Query: 250 PNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGL 309
+ CS C C +TG C+ G C + RG KC C +
Sbjct: 538 GHGQCSCGD----CLCDSDWTGYY---CNCTTRTDTCMSSNGLLC-SGRG--KCECGSCV 587
Query: 310 VGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQGQCNNP 369
P G C + CP K C ++ G + CN
Sbjct: 588 CIQPGSYG----DTCEKCPTCPDACTFKK---------ECVECKKFDRGALHDENTCNRY 634
Query: 370 CERQGACGVNSLCNVLTHRKVCFCP 394
C + V L + C
Sbjct: 635 CRDEIES-VKELKDTGKDAVNCTYK 658
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 31.9 bits (73), Expect = 0.22
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 4/64 (6%)
Query: 240 ISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHL-IDFCAAKPCGPGARCDNSR 298
+C N + K +C C GY PCG + +
Sbjct: 86 ATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAP---DQKSCKPAVPFPCGRVSVSHSPT 142
Query: 299 GSYK 302
+
Sbjct: 143 TLTR 146
Score = 29.6 bits (67), Expect = 1.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D C PC G C + SY+C C +G G
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK 80
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 33.3 bits (76), Expect = 0.24
Identities = 14/116 (12%), Positives = 20/116 (17%), Gaps = 16/116 (13%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTD 340
G + R S C D V
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSFYH--------------DTDFLGEELDIVAAK 312
Query: 341 GVPKCKASCQSDEECGLGE-KCLQGQCNNP-CERQGACGVNSLCNVLTHRKVCFCP 394
C+ C + C Q CN + N + H +
Sbjct: 313 SHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 32.7 bits (74), Expect = 0.28
Identities = 9/45 (20%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 271 GDAYFGCHLI-DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPY 314
G GC C C C + C C + P
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL 219
Score = 29.6 bits (66), Expect = 3.0
Identities = 6/33 (18%), Positives = 6/33 (18%)
Query: 452 DPCSPAPCGPNAQCSVANHRPLCSCPAGLMGLP 484
C C C C C P
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP 218
Score = 28.8 bits (64), Expect = 4.7
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 138 GQMQCRPACEGILCGRNALCTASDHHATCSCKPGYVGHP 176
G C+ C +C +C C P
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP 218
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 31.2 bits (70), Expect = 0.83
Identities = 14/67 (20%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 259 HKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
+Q G GC C P P Y+C CP G+ G C
Sbjct: 259 SQQRQPNATNPCGIDNGGCS--HLCLMSPVKPF---------YQCACPTGVKLLENGKTC 307
Query: 319 VSASQCT 325
+
Sbjct: 308 KDGNSHH 314
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 31.4 bits (70), Expect = 0.94
Identities = 33/181 (18%), Positives = 47/181 (25%), Gaps = 18/181 (9%)
Query: 367 NNPCERQG-ACGVNSLCNVLTHRKVCFCPRGFTGDPETECVRITCLSHADCYPGGGSLCL 425
+ E G C + V + C ++ LC
Sbjct: 149 KDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCC 208
Query: 426 ANLCTRGCSADTDCPAALSCR----SAECVDPCSPA-------PCGPNAQCSVANHRPLC 474
+ C CS D ++CR CV+ C P C + C +H+
Sbjct: 209 HSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKN 268
Query: 475 SCPAGLMGLPSANTACVRTPALECEENRQCKGEGEVCADGRCRPLCSSDGGCLSNESTGG 534
S G N C+ EC +C C C L E T
Sbjct: 269 SRRQGCHQYVIHNNKCIP----ECPSGYTMNSSNLLCT--PCLGPCPKVCHLLEGEKTID 322
Query: 535 S 535
S
Sbjct: 323 S 323
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 30.2 bits (68), Expect = 0.94
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 230 DKVCEDHR---CKISCLANNPCGPNALCSAEKHKQICYCQPGYTGD 272
D C + C + C + C + C C GY G
Sbjct: 106 DDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.1 bits (68), Expect = 0.94
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 230 DKVCEDHR---CKISCLANNPCGPNALCSAEKHKQICYCQPGYTGD 272
D+ C + C + + C C C C PG+ G
Sbjct: 106 DEHCLKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 151
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.1 bits (68), Expect = 1.0
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 230 DKVCEDHR---CKISCLANNPCGPNALCSAEKHKQICYCQPGYTGD 272
D+ C + C + N C + C + C C PG++G
Sbjct: 106 DERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 30.6 bits (69), Expect = 1.2
Identities = 14/118 (11%), Positives = 17/118 (14%), Gaps = 16/118 (13%)
Query: 363 QGQC-NNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDPETECVRITCLSHADCYPGGG 421
Q N C C V P F C D
Sbjct: 56 AVQLVENFCRNPDGDEEGVWCYV------AGKPGDFGYCDLNYCEEAVEEETGDGLDED- 108
Query: 422 SLCLANLCTRGCSADTDCPAALSCRSAECVDPCSPAPCGPNAQCSVANHRPLCSCPAG 479
R T + + A CG +
Sbjct: 109 -------SDRAIEGATATSEYQTFFNPATF-GSGEADCGLRPLFEKKSLEDKTERELL 158
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 2/106 (1%)
Query: 43 RNAECAVVNHTPRCTCVAGTVGDPKYQSGVGTSCTSSRDCIGEQQCISGLCQPTCRSNTT 102
R+ + + P GV S C G CISG+C C T
Sbjct: 159 RSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCF--CDLGYT 216
Query: 103 CPAQHYCNSGLCVLEMQCTTHDQCSATEQCRSNDMGQMQCRPACEG 148
++ EM + S + C +G
Sbjct: 217 AAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDG 262
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 30.2 bits (68), Expect = 1.7
Identities = 34/172 (19%), Positives = 46/172 (26%), Gaps = 31/172 (18%)
Query: 327 DDQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQGQCNNPCERQGACGVNSLCNVLT 386
V + Q+ + C Q +C C G C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQN---AIFFKTCQQAECPGGCRNGGFC---------N 162
Query: 387 HRKVCFCPRGFTGDP-ETECVRITCLSHADCYPGG---------GSLCLANLCTRGCSAD 436
R++C CP GF G E C++ C G G C C+ C
Sbjct: 163 ERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNG 222
Query: 437 TDCPAALSCR------SAECVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
C C +C P PC +C + C C G G
Sbjct: 223 GTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSK---CKCSKGYQG 271
Score = 27.9 bits (62), Expect = 9.3
Identities = 44/202 (21%), Positives = 59/202 (29%), Gaps = 36/202 (17%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCL 304
C C+ + IC C G+ G H C G C C+
Sbjct: 152 PGGCRNGGFCNERR---ICECPDGFHGP-----HCEKALCTPRCMNGGLCVT---PGFCI 200
Query: 305 CPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQG 364
CP G YG C + C G C KC C E GE+C
Sbjct: 201 CPPGF----YGVNC---DKANCSTTCFNGGTCFYPG---KC--ICPPGLE---GEQCEIS 245
Query: 365 QCNNPCERQGACGVNSLCNVLTHRKVCFCPRGFTGDP-ETECVRITCLSHADCYPGGGSL 423
+C PC G C + C C +G+ GD C +H C+
Sbjct: 246 KCPQPCRNGGKC---------IGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPNKCQ 296
Query: 424 CLANLCTRGCSADTDCPAALSC 445
C R C+ + +
Sbjct: 297 CQEGWHGRHCNKRYEASLIGTK 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.2 bits (67), Expect = 2.1
Identities = 55/315 (17%), Positives = 82/315 (26%), Gaps = 18/315 (5%)
Query: 26 CVDGRCRNPCEADEVCGRNAECAVVNHTPRCTCVAGTVGDPKYQSGVGTSCTSSRDCIGE 85
C DG+C VC + +C + + +C T G +Q T C +
Sbjct: 95 CHDGKC---ISRQFVCDSDRDCL--DGSDEASCPVLTCGPASFQCNSSTCIPQLWACDND 149
Query: 86 QQCISGLCQPTCRSNTTCPAQHYCNSGLCV-LEMQCTTHDQCSATEQCRSNDMGQMQCRP 144
C G + +S C E C + + ++ +C G C+
Sbjct: 150 PDCEDGSDEWPQ--RCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD----GGPDCKD 203
Query: 145 ACEGILCGRNALCTASDHHATCSCKPGYVGHPGPSMGTGPSSHSGHAGGKHGPGLSPGAT 204
+ C A+ C G H
Sbjct: 204 KSDEENC-----AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 258
Query: 205 SHSSHSGGPVGCHRVECNSHADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICY 264
+ G CN DC C + +N G + +C+ K C
Sbjct: 259 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 318
Query: 265 CQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQC 324
C G+ A C P C N G YKC C G DP+ C +
Sbjct: 319 CPDGFQLVAQRRCE-DIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 377
Query: 325 TRDDQCPPGAHCVKT 339
T
Sbjct: 378 AYLFFTNRHEVRKMT 392
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular
matrix, adhesion, connective tissue, repeat; HET: CPS;
1.9A {Mus musculus} SCOP: b.22.1.1
Length = 178
Score = 28.8 bits (64), Expect = 3.3
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 1/43 (2%)
Query: 169 KPGYVGHPGPSMGTGPSSHSGHAGGKHGPGLSPGATSHSSHSG 211
P G P MG G G G ++ +
Sbjct: 11 TPSPQGEYLPDMGLGIDGVKTPHAYA-GKKGKHGGPAYEMPAF 52
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.2 bits (65), Expect = 3.5
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 22 ASAACVDGRCRNPCEADEVCGRNAECAVVNHTPRCTCVAGTVGDPKYQSGVGTSCTSSRD 81
+ C R T +C C G GD + +C
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGV 435
Query: 82 CIGEQQCI--SGLCQPTC 97
C+ +C+ G P C
Sbjct: 436 CVRPNKCLCKKGYLGPQC 453
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 29.0 bits (65), Expect = 3.5
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 112 GLCVLEMQCT--THDQCSATEQCRSNDMGQMQCRPACEGILCGR 153
G ++ + T T S T + R+ + ++ P I+
Sbjct: 74 GFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.1 bits (64), Expect = 4.4
Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 29/193 (15%)
Query: 221 CNSHADCSGDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICYCQ-PGYTGDAYFGCHL 279
++ + + + +C SC + G + K IC Q G
Sbjct: 149 LSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCC 208
Query: 280 IDFCAAKPCGPGAR----CDNSRGSYKCL--CPLGLVGDP--------------YGAGCV 319
+ CAA GP C R C CP ++ +P +GA CV
Sbjct: 209 HNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCV 268
Query: 320 SASQCTRD--------DQCPPGAHCVKTDGVPKCKASCQSDEECGLGEKCLQGQCNNPCE 371
C ++ ++ DGV KCK + G + + +
Sbjct: 269 KKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSIN 328
Query: 372 RQGACGVNSLCNV 384
+ ++
Sbjct: 329 ATNIKHFKNCTSI 341
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 28.7 bits (63), Expect = 5.1
Identities = 9/53 (16%), Positives = 14/53 (26%)
Query: 294 CDNSRGSYKCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCVKTDGVPKCK 346
C NS G+++C C G P C + +
Sbjct: 14 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT 66
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 28.4 bits (64), Expect = 5.5
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 112 GLCVLEMQCT--THDQCSATEQCRSNDMGQMQCRPACEGILCGR 153
G +LE T S + Q R+ ++ + P I+
Sbjct: 44 GFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB:
1zrs_A 2aum_A 2aun_A
Length = 311
Score = 28.1 bits (63), Expect = 6.8
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 112 GLCVLEMQCT--THDQCSATEQCRSNDMGQMQCRPACEGILCGR 153
G+ + + + T + R D+ P + C R
Sbjct: 45 GVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 28.2 bits (62), Expect = 6.8
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 288 CGPGARCDNSRGSYKCLCPLGLVGD 312
C A C + + C C G+
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGN 39
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 28.3 bits (62), Expect = 6.8
Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 81 DCIGEQQCISGLCQPTCRSNTTCPAQHYCNSGLCVLEMQC-TTHDQCSATEQCRSNDMGQ 139
+ + + N G + C T +C + + Q
Sbjct: 123 STVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ 182
Query: 140 MQCRPACEGILCGRNALCTASDHHATCSC 168
C C C N C + +CS
Sbjct: 183 KMCPSTCGKRACTENNECCHPECLGSCSA 211
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 26.6 bits (58), Expect = 7.7
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 245 NNPCGPNALC-SAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKP--CGPGARCD-NSRGS 300
+ NA C + C G+ C C P A C + +
Sbjct: 15 DTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDDKKE 74
Query: 301 YKCLCPLGLVGDPY-GAGCVSASQC 324
+C C + G C S+S
Sbjct: 75 VECKCTKEGSEPLFEGVFCSSSSGP 99
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 28.3 bits (62), Expect = 8.3
Identities = 13/96 (13%), Positives = 20/96 (20%), Gaps = 3/96 (3%)
Query: 242 CLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSY 301
+C + K C C+ TG +P PG+
Sbjct: 294 RGRCKCNLHATVCVYDNSKLTCECEHNTTGP--DCGKCKKNYQGRPWSPGS-YLPIPKGA 350
Query: 302 KCLCPLGLVGDPYGAGCVSASQCTRDDQCPPGAHCV 337
C + C C C+
Sbjct: 351 ANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCL 386
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.476
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,016,253
Number of extensions: 503297
Number of successful extensions: 3889
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2542
Number of HSP's successfully gapped: 745
Length of query: 535
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,965,535
Effective search space: 1732938795
Effective search space used: 1732938795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)