RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9424
(535 letters)
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 30.8 bits (70), Expect = 0.022
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
++ C + PC A C + G ++C+C G G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33
Score = 24.3 bits (53), Expect = 4.9
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 451 VDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
V+ C PC +A C C C G G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.8 bits (70), Expect = 0.026
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D C + PC G C + SY+C CP G G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 25.4 bits (56), Expect = 2.2
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 451 VDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
D C PC C + C CP G G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 30.6 bits (69), Expect = 0.028
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGCV 319
++ C C N+ GSY C CP +P GCV
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 30.9 bits (70), Expect = 0.030
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 277 CHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
+D C +C N+ GSY+C CP G +
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA 37
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 30.0 bits (68), Expect = 0.042
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D CA+ PC G C + SY C C G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 34
Score = 23.9 bits (52), Expect = 6.3
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 451 VDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
D C+ +PC C +C C G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.14
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D C PC +C + G Y C C G G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 32
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 28.3 bits (63), Expect = 0.20
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 280 IDFCAAKPCG-PGARCDNSRGSYKCLCPLGLVGDPYGAGCV 319
ID C P G C N+ GSY+C CP G P + C+
Sbjct: 2 IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 28.2 bits (63), Expect = 0.24
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 280 IDFCAAK--PCGPGARCDNSRGSYKCLCPLGLVGD 312
+D C+ PC +C N+ GS++C C G G
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.7 bits (62), Expect = 0.26
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
D CA+ PC RC + ++C CP G G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGH 32
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.7 bits (59), Expect = 0.75
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 280 IDFCAAKPCG-PGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
ID C P G +C N+ GS++C CP G + C
Sbjct: 3 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.7 bits (59), Expect = 0.85
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
C C C + +Y C C G G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGL 33
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 26.3 bits (58), Expect = 1.0
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLVGD 312
C C C + G+Y C C G G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 33
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 26.3 bits (58), Expect = 1.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 280 IDFCAAKPCGPG-ARCDNSRGSYKCLCPLGLVGDP 313
ID C P G +C N+ G ++C C G
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 25.9 bits (57), Expect = 1.6
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 280 IDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
ID C P C N G YKC C G DP+ C
Sbjct: 1 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.6 bits (56), Expect = 2.2
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 287 PCGPGARCDNSRGSYKCLCPLGLVGD 312
C A C + + C C G+
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGN 33
Score = 24.0 bits (52), Expect = 6.1
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 245 NNPCGPNALCSAEKHKQICYCQPGYTGD 272
+ C +A C C C YTG+
Sbjct: 6 RHQCSVHAECRDYATGFCCRCVANYTGN 33
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 28.1 bits (62), Expect = 2.7
Identities = 10/57 (17%), Positives = 16/57 (28%)
Query: 259 HKQICYCQPGYTGDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYG 315
H I +IDF A P + + + P + +P G
Sbjct: 150 HLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVG 206
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 27.8 bits (61), Expect = 2.8
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 271 GDAYFGCHLIDFCAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
+IDF A G N G+ + + P + +P G
Sbjct: 150 NVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEA 197
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 25.3 bits (55), Expect = 3.7
Identities = 8/36 (22%), Positives = 8/36 (22%)
Query: 283 CAAKPCGPGARCDNSRGSYKCLCPLGLVGDPYGAGC 318
C N G Y C C G C
Sbjct: 15 EEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.5 bits (53), Expect = 6.1
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 288 CGPGARCDNSRGSYKCLCPLGLVGDPYGAGCVS 320
C P + + + C CP G++ C++
Sbjct: 18 CLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 50
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 24.0 bits (52), Expect = 6.3
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 280 IDFCAAKPCGPGARC-DNSRGSYKCLCP 306
++ C PC C Y+C C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCT 29
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 23.9 bits (52), Expect = 8.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 281 DFCAAKPCGPGARCDNSRGSYKCLCPLGLV 310
+ C G C++ + Y+CLCP G
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 26.7 bits (58), Expect = 8.5
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 229 GDKVCEDHRCKISCLANNPCGPNALCSAEKHKQICYCQPGYTGDAYFGCHLIDFCAAKPC 288
K+ E K + G T +YF + F
Sbjct: 92 ASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVP 151
Query: 289 GPGARCDNSRGSYKCLCPLGLVGDPYGAGCVSASQC 324
G + + + L PL L D G+ A+ C
Sbjct: 152 GGSSGGSAAAVAA-GLVPLSLGSDTGGSIRQPAAYC 186
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 24.0 bits (52), Expect = 9.8
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 445 CRSAECVDPCSPAPCGPNAQCSVANHRPLCSCPAGLMG 482
C PC+ CG + C C C +G G
Sbjct: 2 CLVLPLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.476
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,088,406
Number of extensions: 114695
Number of successful extensions: 870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 306
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.9 bits)