BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9427
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
          Length = 237

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 2  LVSFVFYLT-LTCWNSCDGVSCGVNAVCVVNNHEARCFCPP 41
          L+ F+  +  L C +SCDGV CG    C +     RC C P
Sbjct: 57 LLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAP 97


>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
          Complex
          Length = 209

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 2  LVSFVFYLT-LTCWNSCDGVSCGVNAVCVVNNHEARCFCPP 41
          L+ F+  +  L C +SCDGV CG    C +     RC C P
Sbjct: 48 LLGFLGLVHCLPCKDSCDGVECGPGKACRMLGGRPRCECAP 88


>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 17/79 (21%)

Query: 162 CVPQGQCPRGDADCPPSSRCSGGQCVSV---CQGA--CGPNALCRAVGK-RPVCACP--- 212
           C+P   C   +ADC    RC  G+C++    C G   CG N+  R  G+ + VC      
Sbjct: 106 CIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNP 165

Query: 213 --------DGFSAVGGEAR 223
                   +GF  + GE R
Sbjct: 166 IPSVQLMGNGFHFLAGEPR 184


>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
 pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
           Escherichia Coli
          Length = 761

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 99  VCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKV-VCSCPELSVG 155
           V HC   TH    P +   R+SNLC D     PT    D    NG++ +C+    ++G
Sbjct: 417 VDHC--NTHSPFDPAIAPVRQSNLCLD--IALPTKPLNDVNDENGEIALCTLSAFNLG 470


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.492 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,009,312
Number of Sequences: 62578
Number of extensions: 489655
Number of successful extensions: 1067
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 155
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)