BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9427
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20911|CUBN_CAEEL Probable cubilin OS=Caenorhabditis elegans GN=ZC116.3 PE=1 SV=4
Length = 4047
Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 116/349 (33%), Gaps = 89/349 (25%)
Query: 11 LTCWNSCDGVSCGVNAVCVVN-NHEARCFCPP---GSYVGDPNIEC-----------RQV 55
L N+CD C C+ + + C CPP G+ EC
Sbjct: 166 LIAINACDPNKCSNGGTCIPSFGAKFTCLCPPHFTGTTCEADIDECSVYNGTTAGCQNNG 225
Query: 56 PCVHNH-----DCSTSHACDLLSHTCIPACDSG--ACGTNAVCIPEDHRPV--------- 99
C++N C + + L + + AC CG + CI P
Sbjct: 226 TCINNRGGFECQCQSGYHGSLCQYH-MSACSKTFELCGPHGHCIESIVDPTGQSSSDTTT 284
Query: 100 --CHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCS-CPELSVGD 156
C C G S + + N C +SNPCHP C + G VCS CP+
Sbjct: 285 YKCICDWGFKVSSDKNNPTCVDVNEC-ESNPCHPGVDCINL---PGSFVCSGCPK----- 335
Query: 157 PYKTG---CVPQGQCPRGDADCPPSSRC------------------SGGQCV---SVCQG 192
YKT C+ +C C P S+C GG CV S +
Sbjct: 336 GYKTDGNVCIDVNECEGEIRVCSPLSKCHNTLGSYYCDSCPTGYSGDGGNCVKDDSCVKN 395
Query: 193 ACGPNALCR-------AVGKRPVCACPDGFSAVG-GEARVGCFREMSACAGDQECLAGEE 244
C A C+ AVG C CPDG+ G GE GC + S + C+
Sbjct: 396 KCHKLATCKVTDDGYSAVGDY-TCYCPDGYVGDGIGEE--GCVKSASNVCQNHNCVNA-- 450
Query: 245 KCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTGQACQAGTC 293
G+C+ + C C + C S C T GTC
Sbjct: 451 ----GKCKPTSDTEYKC----ECEAGFLGKFCEKTSPCQTNPCKNGGTC 491
>sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 OS=Caenorhabditis elegans
GN=mua-3 PE=1 SV=2
Length = 3767
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 98/256 (38%), Gaps = 52/256 (20%)
Query: 69 CDLLSHTCI-PACDSGACGTNAVCIPEDHRPVCHCPVG-THPSPSPDVH---CARESNLC 123
C L++ C+ P+ +S C NA CI ++ C C G SPSP + C N C
Sbjct: 2207 CKQLTNECLRPSLNS--CDRNARCIDKEEGYECECRDGFIDVSPSPTLKGRACRELVNEC 2264
Query: 124 RDS--NPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRC 181
+S N C ARC+DT D Y+ CP D PS
Sbjct: 2265 ANSRLNDCDKNARCKDTM----------------DSYEC------DCPVNSKDISPSPSF 2302
Query: 182 SGGQC---VSVCQGA---CGPNALCRAVGKRPVCACPDGF--SAVGGEARVGCFREMSAC 233
G C ++ C+ C P+A CR + C CP GF + AR G
Sbjct: 2303 PGRVCLMFINECESGVHDCDPSATCRDNEQSFTCECPSGFVDRSPNKHARPG-------- 2354
Query: 234 AGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTGQACQAGTC 293
+ C+ ++C GR C SH+DC + E + C+ S Q + +
Sbjct: 2355 ---RVCVKLVDECREGR--HTCSSHADCRDLEEGYTCECRDGYVDRSPNLASQPGRVCSA 2409
Query: 294 ELGCRQNEECSGQMIC 309
C N +CS +C
Sbjct: 2410 PEVCPPNHDCSSAAVC 2425
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein OS=Drosophila melanogaster GN=N PE=1
SV=3
Length = 2703
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 77 IPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCE 136
+ C S C N VCI + + C CP G + D HC + + C SNPC RCE
Sbjct: 716 VDECISSPCANNGVCIDQVNGYKCECPRGFY-----DAHCLSDVDECA-SNPCVNEGRCE 769
Query: 137 DTGATNGKVVCSCP 150
D + +C CP
Sbjct: 770 D---GINEFICHCP 780
>sp|A6QR11|NELL2_BOVIN Protein kinase C-binding protein NELL2 OS=Bos taurus GN=NELL2 PE=2
SV=1
Length = 816
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 62 DCSTSHACDLLSHTCIPAC-------DSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDV 114
DC+ SH LSH+C C + C N+VC + R VC C G +
Sbjct: 378 DCAESHQI-TLSHSCCKVCKGYDFCSERHNCMENSVCRNLNDRAVCSCRDGFRALREDNA 436
Query: 115 HCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVG-DPYKTGCVPQGQCPRGDA 173
+C + C C +T G +C C + D Y C +C
Sbjct: 437 YCEDIDECAEGRHYCRENTMCVNTP---GSFMCICKTGYIRIDDY--SCTEHDECVTNQH 491
Query: 174 DCPPSSRC-----------------SGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFS 216
+C ++ C +G C + CQ C C A VCACP GF+
Sbjct: 492 NCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCQDGCRNGGACIAAN---VCACPQGFT 548
Query: 217 A 217
Sbjct: 549 G 549
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 174 DCPPSSRCSGGQ-CVSVCQGA--------CGPNALCRAVGKRPVCACPDGFSAVGGEARV 224
DC S + + C VC+G C N++CR + R VC+C DGF A+ E
Sbjct: 378 DCAESHQITLSHSCCKVCKGYDFCSERHNCMENSVCRNLNDRAVCSCRDGFRAL-REDNA 436
Query: 225 GCFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPT 284
C ++ CA + C+ C+ C G I CT H +C T
Sbjct: 437 YC-EDIDECAEGRHYCRENTMCVNTPGSFMCI----CKTGYIRIDDY---SCTEHDECVT 488
Query: 285 GQ 286
Q
Sbjct: 489 NQ 490
>sp|Q99435|NELL2_HUMAN Protein kinase C-binding protein NELL2 OS=Homo sapiens GN=NELL2
PE=1 SV=1
Length = 816
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 174 DCPPSSRCSGGQ-CVSVCQGA--------CGPNALCRAVGKRPVCACPDGFSAVGGEARV 224
DCP S + + C VC+G C N++CR + R VC+C DGF A+ E
Sbjct: 378 DCPESHQITLSHSCCKVCKGYDFCSERHNCMENSICRNLNDRAVCSCRDGFRAL-REDNA 436
Query: 225 GCFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPT 284
C ++ CA + C+ C+ C G I CT H +C T
Sbjct: 437 YC-EDIDECAEGRHYCRENTMCVNTPGSFMCI----CKTGYIRIDDY---SCTEHDECIT 488
Query: 285 GQ 286
Q
Sbjct: 489 NQ 490
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 62/181 (34%), Gaps = 34/181 (18%)
Query: 62 DCSTSHACDLLSHTCIPAC-------DSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDV 114
DC SH LSH+C C + C N++C + R VC C G +
Sbjct: 378 DCPESHQI-TLSHSCCKVCKGYDFCSERHNCMENSICRNLNDRAVCSCRDGFRALREDNA 436
Query: 115 HCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVG-DPYKTGCVPQGQCPRGDA 173
+C + C C +T G +C C + D Y C +C
Sbjct: 437 YCEDIDECAEGRHYCRENTMCVNTP---GSFMCICKTGYIRIDDY--SCTEHDECITNQH 491
Query: 174 DCPPSSRC-----------------SGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFS 216
+C ++ C +G C + C+ C C A VCACP GF+
Sbjct: 492 NCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCRNGGACIAAN---VCACPQGFT 548
Query: 217 A 217
Sbjct: 549 G 549
>sp|Q2VWQ2|NELL1_MOUSE Protein kinase C-binding protein NELL1 OS=Mus musculus GN=Nell1
PE=2 SV=1
Length = 810
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 184 GQCVSVCQG--------ACGPNALCRAVGKRPVCACPDGFSAVGGEARV-----GCFREM 230
QC VC+G CG N+ C+ + C C +G+ +V G + C +M
Sbjct: 383 NQCCRVCRGHNFCAEAPKCGENSECKNWNTKATCECKNGYISVQGNSAYCEDIDECAAKM 442
Query: 231 SACAGDQEC--LAGEEK--CIGGRCRV---ACLSHSDCSEGERC--ISSLCQSPCTSHS- 280
C + C L G + CI G RV +C H DC G+ +++C + HS
Sbjct: 443 HYCHANTVCVNLPGLYRCDCIPGYIRVDDFSCTEHDDCGSGQHNCDKNAICTNTVQGHSC 502
Query: 281 -----QCPTGQACQAGTCELGCRQNEEC 303
G C+A CE GCR C
Sbjct: 503 TCQPGYVGNGTVCKA-FCEEGCRYGGTC 529
>sp|Q5R3Z7|NELL2_PONAB Protein kinase C-binding protein NELL2 OS=Pongo abelii GN=NELL2
PE=2 SV=2
Length = 816
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 174 DCPPSSRCSGGQ-CVSVCQGA--------CGPNALCRAVGKRPVCACPDGFSAVGGEARV 224
DCP S + + C VC+G C N++CR + R VC+C DGF A+ E
Sbjct: 378 DCPESHQITLSHSCCKVCKGYDFCSERHNCMENSVCRNLNDRAVCSCRDGFRAL-REDNA 436
Query: 225 GCFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPT 284
C ++ CA + C+ C+ C G I CT H +C T
Sbjct: 437 YC-EDIDECAEGRHYCRENTMCVNTPGSFMCI----CKTGYIRIDDY---SCTEHDECIT 488
Query: 285 GQ 286
Q
Sbjct: 489 NQ 490
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 34/181 (18%)
Query: 62 DCSTSHACDLLSHTCIPAC-------DSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDV 114
DC SH LSH+C C + C N+VC + R VC C G +
Sbjct: 378 DCPESHQI-TLSHSCCKVCKGYDFCSERHNCMENSVCRNLNDRAVCSCRDGFRALREDNA 436
Query: 115 HCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVG-DPYKTGCVPQGQCPRGDA 173
+C + C C +T G +C C + D Y C +C
Sbjct: 437 YCEDIDECAEGRHYCRENTMCVNTP---GSFMCICKTGYIRIDDY--SCTEHDECITNQH 491
Query: 174 DCPPSSRC-----------------SGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFS 216
+C ++ C +G C + C+ C C A VCACP GF+
Sbjct: 492 NCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCRNGGACIAAN---VCACPQGFT 548
Query: 217 A 217
Sbjct: 549 G 549
>sp|Q62918|NELL2_RAT Protein kinase C-binding protein NELL2 OS=Rattus norvegicus
GN=Nell2 PE=2 SV=1
Length = 816
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 36/131 (27%)
Query: 174 DCPPSSRCSGGQ-CVSVCQG--------ACGPNALCRAVGKRPVCACPDGFSAVGGEARV 224
DCP S + + C VC+G C N++CR + R VC+C DGF A+
Sbjct: 378 DCPESHQIALSHSCCKVCKGYDFCSEKHTCMENSVCRNLNDRAVCSCRDGFRAL------ 431
Query: 225 GCFREMSA-CAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQS--------P 275
RE +A C EC G R C ++ C +CQ+
Sbjct: 432 ---REDNAYCEDIDECAEG---------RHYCRENTMCVNTPGSFLCICQTGYIRIDDYS 479
Query: 276 CTSHSQCPTGQ 286
CT H +C T Q
Sbjct: 480 CTEHDECLTNQ 490
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 62/180 (34%), Gaps = 34/180 (18%)
Query: 62 DCSTSHACDLLSHTCIPAC-------DSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDV 114
DC SH LSH+C C + C N+VC + R VC C G +
Sbjct: 378 DCPESHQI-ALSHSCCKVCKGYDFCSEKHTCMENSVCRNLNDRAVCSCRDGFRALREDNA 436
Query: 115 HCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVG-DPYKTGCVPQGQCPRGDA 173
+C + C C +T G +C C + D Y C +C
Sbjct: 437 YCEDIDECAEGRHYCRENTMCVNTP---GSFLCICQTGYIRIDDY--SCTEHDECLTNQH 491
Query: 174 DCPPSSRC-----------------SGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFS 216
+C ++ C +G C + C+ C C A VCACP GF+
Sbjct: 492 NCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCKNGGACIAAN---VCACPQGFT 548
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus
norvegicus GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 191 QGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGR 250
G C L +A G+ CACPD F V R C M C+ Q EKCI
Sbjct: 3475 NGGCSHLCLIKAGGRGFTCACPDDFQTVQLRDRTLC---MPMCSSTQFLCGNNEKCIPIW 3531
Query: 251 CRVACLSHSDCSEG 264
+ C DCS+G
Sbjct: 3532 WK--CDGQKDCSDG 3543
>sp|Q61220|NELL2_MOUSE Protein kinase C-binding protein NELL2 OS=Mus musculus GN=Nell2
PE=2 SV=2
Length = 816
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 27/112 (24%)
Query: 145 VVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQ-CVSVCQG--------ACG 195
V+ C + ++ GC P DCP S + + C VC+G C
Sbjct: 357 VLYECKDQTMKLVENIGCPP--------LDCPESHQIALSHSCCKVCKGYDFCSEKHTCM 408
Query: 196 PNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSA-CAGDQECLAGEEKC 246
N++CR + R VC+C DGF A+ RE +A C EC G C
Sbjct: 409 ENSVCRNLNDRVVCSCRDGFRAL---------REDNAYCEDIDECAEGRHYC 451
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 65/187 (34%), Gaps = 26/187 (13%)
Query: 49 NIECRQVPCVHNHDCSTSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHP 108
NI C + C +H + SH+C + + C N+VC + R VC C G
Sbjct: 371 NIGCPPLDCPESHQIALSHSCCKVCKGYDFCSEKHTCMENSVCRNLNDRVVCSCRDGFRA 430
Query: 109 SPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVG-DPYKTGCVPQGQ 167
+ +C + C C +T G +C C + D Y C +
Sbjct: 431 LREDNAYCEDIDECAEGRHYCRENTMCVNTP---GSFMCVCKTGYIRIDDY--SCTEHDE 485
Query: 168 CPRGDADCPPSSRC-----------------SGGQCVSVCQGACGPNALCRAVGKRPVCA 210
C +C ++ C +G C + C+ C C A VCA
Sbjct: 486 CLTTQHNCDENALCFNTVGGHNCVCKPGYTGNGTTCKAFCKDGCRNGGACIAAN---VCA 542
Query: 211 CPDGFSA 217
CP GF+
Sbjct: 543 CPQGFTG 549
>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens
GN=LRP2 PE=1 SV=3
Length = 4655
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 30/144 (20%)
Query: 191 QGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGR 250
G C L + GK C CPD F + C M C+ Q A EKCI
Sbjct: 3473 NGGCSHLCLIKPGGKGFTCECPDDFRTLQLSGSTYC---MPMCSSTQFLCANNEKCIPIW 3529
Query: 251 CRVACLSHSDCSEGE----------------RCISSLCQSP---CTSHSQCPTGQACQAG 291
+ C DCS+G +C C SP C +H CP G
Sbjct: 3530 WK--CDGQKDCSDGSDELALCPQRFCRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDEDRL 3587
Query: 292 TCELGCRQNEEC-SGQMICAGSKC 314
CE N C S + CA +C
Sbjct: 3588 LCE-----NHHCDSNEWQCANKRC 3606
>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus
GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 191 QGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGR 250
G C L +A G+ C CPD F V R C M C+ Q EKCI
Sbjct: 3475 NGGCSHLCLIKAGGRGFTCECPDDFQTVQLRDRTLC---MPMCSSTQFLCGNNEKCIPIW 3531
Query: 251 CRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTGQ-ACQAGTC 293
+ C DCS+G S LC H C GQ C+ G C
Sbjct: 3532 WK--CDGQKDCSDGSD-ESDLC-----PHRFCRLGQFQCRDGNC 3567
>sp|Q62919|NELL1_RAT Protein kinase C-binding protein NELL1 OS=Rattus norvegicus
GN=Nell1 PE=2 SV=2
Length = 810
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 33/185 (17%)
Query: 139 GATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGACGPNA 198
G K+ +CP L+ K +P+ QC R CP + C+ CG N+
Sbjct: 358 GGVLVKITEACPPLNCS--AKDHILPENQCCRV---CPGHNFCAEAP-------KCGENS 405
Query: 199 LCRAVGKRPVCACPDGFSAVGGEARV-----GCFREMSACAGDQEC--LAGEEK--CIGG 249
C+ + C C +G+ +V G + C +M C + C L G + C+ G
Sbjct: 406 ECKNWNTKATCECKNGYISVQGNSAYCEDIDECAAKMHYCHANTVCVNLPGLYRCDCVPG 465
Query: 250 RCRV---ACLSHSDCSEGERC--ISSLCQSPCTSHS------QCPTGQACQAGTCELGCR 298
RV +C H DC G+ +++C + HS G C+A CE GCR
Sbjct: 466 YIRVDDFSCTEHDDCGSGQHNCDKNAICTNTVQGHSCTCQPGYVGNGTICKA-FCEEGCR 524
Query: 299 QNEEC 303
C
Sbjct: 525 YGGTC 529
>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=Rattus norvegicus
GN=Notch1 PE=2 SV=2
Length = 2531
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPP---GSYVGDPNIECRQVP--CVHNHDCSTSHAC 69
+ C G +C CV + C CPP G Y + EC+ +P C + C SH
Sbjct: 259 DDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNAGTCHNSHG- 317
Query: 70 DLLSHTC--------------IPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVH 115
+ C I C S AC A C C CP G
Sbjct: 318 ---GYNCVCVNGWTGEDCSDNIDDCASAACFQGATCHDRVASFYCECPHG---------- 364
Query: 116 CARESNLCR-----DSNPCHPTARCEDTGATNGKVVCSCPELSVG 155
R LC SNPC+ + C DT NGK +C+CP G
Sbjct: 365 --RTGLLCHLNDACISNPCNEGSNC-DTNPVNGKAICTCPRGYTG 406
>sp|Q04721|NOTC2_HUMAN Neurogenic locus notch homolog protein 2 OS=Homo sapiens GN=NOTCH2
PE=1 SV=3
Length = 2471
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 27/129 (20%)
Query: 12 TCWNSCDGVSCGVNAVCVVNNHEARCFCP---PGSYVGDPNIECRQVPCVHNHDCSTSHA 68
T N C C CV E++C CP G+Y PN+ C D + S
Sbjct: 1062 TLVNLCSRSPCKNKGTCVQKKAESQCLCPSGWAGAYCDVPNVSC---------DIAASRR 1112
Query: 69 CDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNP 128
L+ H C + VCI + C CP+G S +C + + C SNP
Sbjct: 1113 GVLVEHL---------CQHSGVCINAGNTHYCQCPLGYTGS-----YCEEQLDECA-SNP 1157
Query: 129 CHPTARCED 137
C A C D
Sbjct: 1158 CQHGATCSD 1166
>sp|Q14246|EMR1_HUMAN EGF-like module-containing mucin-like hormone receptor-like 1
OS=Homo sapiens GN=EMR1 PE=2 SV=3
Length = 886
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 71/189 (37%), Gaps = 41/189 (21%)
Query: 107 HPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVP-Q 165
P+ P+ + N CRDS C A C +T + C+C K G +
Sbjct: 23 RPTRKPNT----KGNNCRDSTLCPAYATCTNTVDS---YYCAC---------KQGFLSSN 66
Query: 166 GQCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVG 225
GQ D P RC S CGPN+ C+ + R C+C DGFS+ G V
Sbjct: 67 GQNHFKD----PGVRCKDIDECSQSPQPCGPNSSCKNLSGRYKCSCLDGFSSPTGNDWV- 121
Query: 226 CFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTG 285
G+ C E CL+ S C E C++S+ C+ C G
Sbjct: 122 -----PGKPGNFSCTDINE----------CLTSSVCPEHSDCVNSMGSYSCS----CQVG 162
Query: 286 QACQAGTCE 294
+ TCE
Sbjct: 163 FISRNSTCE 171
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1
PE=1 SV=3
Length = 2531
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPP---GSYVGDPNIECRQVP--CVHNHDCSTSHAC 69
+ C G +C CV + C CPP G Y + EC+ +P C + C +H
Sbjct: 259 DDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHG- 317
Query: 70 DLLSHTC--------------IPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVH 115
+ C I C S AC A C C CP G
Sbjct: 318 ---GYNCVCVNGWTGEDCSENIDDCASAACFQGATCHDRVASFYCECPHG---------- 364
Query: 116 CARESNLCR-----DSNPCHPTARCEDTGATNGKVVCSCPELSVG 155
R LC SNPC+ + C DT NGK +C+CP G
Sbjct: 365 --RTGLLCHLNDACISNPCNEGSNC-DTNPVNGKAICTCPSGYTG 406
>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1
PE=1 SV=4
Length = 2555
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 59/165 (35%), Gaps = 41/165 (24%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPP---GSYVGDPNIECRQVP--CVHNHDCSTSHAC 69
+ C G +C CV + C CPP G Y + EC+ +P C + C +H
Sbjct: 259 DDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHG- 317
Query: 70 DLLSHTC--------------IPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVH 115
+ C I C S AC A C C CP G
Sbjct: 318 ---GYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHG---------- 364
Query: 116 CARESNLCR-----DSNPCHPTARCEDTGATNGKVVCSCPELSVG 155
R LC SNPC+ + C DT NGK +C+CP G
Sbjct: 365 --RTGLLCHLNDACISNPCNEGSNC-DTNPVNGKAICTCPSGYTG 406
>sp|Q75N90|FBN3_HUMAN Fibrillin-3 OS=Homo sapiens GN=FBN3 PE=2 SV=3
Length = 2809
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 77/242 (31%), Gaps = 56/242 (23%)
Query: 24 VNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPACDSG 83
N VCV + RC CP G +++ + CV +CS H C G
Sbjct: 2096 TNGVCVNTDGSFRCECPFGY-----SLDFTGINCVDTDECSVGHPCG-----------QG 2139
Query: 84 ACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNG 143
C TN + E C C G P E +L NP RC +T G
Sbjct: 2140 TC-TNVIGGFE-----CACADGFEPGLMMTCEDIDECSL----NPLLCAFRCHNT---EG 2186
Query: 144 KVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAV 203
+C+CP C +C G DC C+ +
Sbjct: 2187 SYLCTCPAGYTLREDGAMCRDVDECADGQQDCHARG------------------MECKNL 2228
Query: 204 GKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGRC-RVACLSHSDCS 262
C CP G + G C D EC A + C+ GRC A DC
Sbjct: 2229 IGTFACVCPPGMRPLPGSGE--------GCTDDNECHAQPDLCVNGRCVNTAGSFRCDCD 2280
Query: 263 EG 264
EG
Sbjct: 2281 EG 2282
>sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=3
Length = 2570
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 75/214 (35%), Gaps = 46/214 (21%)
Query: 22 CGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPACD 81
C ++A CV ARC C G + GD C+ S+ C SH D
Sbjct: 831 CHLHARCVSQEGVARCRCLDG-FEGD------------GFSCTPSNPC---SHP-----D 869
Query: 82 SGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGAT 141
G C NA C+P HC S V A + CH A C G
Sbjct: 870 RGGCSENAECVPGS-LGTHHCTCHKGWSGDGRVCVAIDECELDMRGGCHTDALCSYVGP- 927
Query: 142 NGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCR 201
G+ C+C GD Y+ C P C G G C A CR
Sbjct: 928 -GQSRCTCKLGFAGDGYQ---------------CSPIDPCRAGN------GGCHGLATCR 965
Query: 202 AVGK-RPVCACPDGFSAVGGEARVGCFREMSACA 234
AVG + VC CP GF G FRE+ A A
Sbjct: 966 AVGGGQRVCTCPPGFGGDGFSCYGDIFRELEANA 999
>sp|Q8UWJ4|DLLD_DANRE Delta-like protein D OS=Danio rerio GN=dld PE=1 SV=2
Length = 717
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 76/219 (34%), Gaps = 55/219 (25%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSH 74
N C G C C + C CPPG Y C+L +
Sbjct: 328 NECSGSPCRNGGSCTDLENTYSCTCPPGFY---------------------GRNCELSAM 366
Query: 75 TCI--PACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPT 132
TC P + G C N PE C CP+G +C ++ + C SNPC
Sbjct: 367 TCADGPCFNGGHCADN----PEGGY-FCQCPMGY-----AGFNCEKKIDHC-SSNPCSND 415
Query: 133 ARCEDTGATNGKVVCSCPELSVGDPYKTG--------CVPQGQCPRGDAD----CPPSSR 180
A+C D + +C CPE G + C G C G +D CPP
Sbjct: 416 AQCLDLVDS---YLCQCPEGFTGTHCEDNIDECATYPCQNGGTCQDGLSDYTCTCPPGY- 471
Query: 181 CSGGQCVSV----CQGACGPNALCRAVGKRPVCACPDGF 215
+G C S C A C + R VCAC G+
Sbjct: 472 -TGKNCTSAVNKCLHNPCHNGATCHEMDNRYVCACIPGY 509
>sp|Q8VHS2|CRUM1_MOUSE Protein crumbs homolog 1 OS=Mus musculus GN=Crb1 PE=1 SV=3
Length = 1405
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 55/145 (37%), Gaps = 31/145 (21%)
Query: 12 TCWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVG-----DPNIECRQVPC--------- 57
T NSC G C C + C CPPG Y G D N EC PC
Sbjct: 108 TATNSCGGNLCQHGGTCRKDPEHPVCICPPG-YAGRFCETDHN-ECASSPCHNGAMCQDG 165
Query: 58 VHNHDC-----STSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSP 112
++ + C CDL C+ S C AVC+ E R C C P
Sbjct: 166 INGYSCFCVPGYQGRHCDLEVDECV----SDPCKNEAVCLNEIGRYTCVC-----PQEFS 216
Query: 113 DVHCARESNLCRDSNPCHPTARCED 137
V+C E + CR S PC A C+D
Sbjct: 217 GVNCELEIDECR-SQPCLHGATCQD 240
>sp|Q61549|EMR1_MOUSE EGF-like module-containing mucin-like hormone receptor-like 1
OS=Mus musculus GN=Emr1 PE=2 SV=1
Length = 931
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 194 CGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLA 241
CGPN++C + R C+C GFS+ G+ + + CA ECL
Sbjct: 92 CGPNSVCTNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLT 139
>sp|Q90827|NEL_CHICK Protein NEL OS=Gallus gallus GN=NEL PE=2 SV=1
Length = 816
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 158 YKTGCVPQGQCPRGDADCPPSSRC-SGGQCVSVCQG--------ACGPNALCRAVGKRPV 208
+K +P+ C +CP S + C +C+G C +++CR + R V
Sbjct: 364 HKMQRIPKDSC--ATLNCPESQQIPLSHSCCKICKGHDFCTEGHNCMEHSVCRNLDDRAV 421
Query: 209 CACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCI 268
C+C DGF A+ E C ++ CA Q C+ C+ C G I
Sbjct: 422 CSCRDGFRAL-REDNAYC-EDVDECAEGQHYCRENTMCVNTPGSFMCI----CKTGYIRI 475
Query: 269 SSLCQSPCTSHSQCPTGQ 286
CT H +C T Q
Sbjct: 476 DDY---SCTEHDECVTNQ 490
>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus
norvegicus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 44/133 (33%), Gaps = 22/133 (16%)
Query: 37 CFCPPGSYVGDPNIECRQVPCVHNHDCSTS--------------HACDLLSHTCIPACDS 82
C CPPG + E PC N C H +SH+ CDS
Sbjct: 488 CQCPPGFFGLLCEFEVTATPCNMNTQCPDGGYCMEYGGSYLCVCHTDHNISHSLPSPCDS 547
Query: 83 GACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATN 142
C C + C CP G H HC + S PC C++TG
Sbjct: 548 DPCFNGGSCDAHEDSYTCECPRGFH-----GRHCEKARPHLCSSGPCRNGGTCKETG--- 599
Query: 143 GKVVCSCPELSVG 155
+ C+CP G
Sbjct: 600 DEYRCTCPYRFTG 612
>sp|Q8R4Y4|STAB1_MOUSE Stabilin-1 OS=Mus musculus GN=Stab1 PE=1 SV=1
Length = 2571
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 38/155 (24%)
Query: 77 IPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPT---- 132
+P C S C N+ C E P C C G ++ N+C +PC P+
Sbjct: 197 LPVCQSLKCPQNSQCSAE--APTCKCLPGY----------TQQDNVCLAPDPCQPSACSP 244
Query: 133 -ARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQ 191
ARC T G+ C CPE GD C+P+ C CP +S + C
Sbjct: 245 LARCSVT--PQGQAQCQCPENYHGD--GKVCLPRDPCLTNFGGCPSNS--------TFC- 291
Query: 192 GACGPNALCRAVGKRPVCACPDGFSAVGGEARVGC 226
L R GK C C G +++ A GC
Sbjct: 292 -------LYRGPGK-ATCMCRPGMTSINNNASEGC 318
>sp|Q92832|NELL1_HUMAN Protein kinase C-binding protein NELL1 OS=Homo sapiens GN=NELL1
PE=1 SV=4
Length = 810
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 35/171 (20%)
Query: 184 GQCVSVCQG--------ACGPNALCRAVGKRPVCACPDGFSAVGGEARV-----GCFREM 230
QC VC+G CG N+ C+ + C C G+ +V G++ C +M
Sbjct: 383 NQCCRVCRGHNFCAEGPKCGENSECKNWNTKATCECKSGYISVQGDSAYCEDIDECAAKM 442
Query: 231 SACAGDQEC--LAGEEK--CIGGRCRV---ACLSHSDCSEGERC--ISSLCQSPCTSHS- 280
C + C L G + C+ G RV +C H +C G+ +++C + HS
Sbjct: 443 HYCHANTVCVNLPGLYRCDCVPGYIRVDDFSCTEHDECGSGQHNCDENAICTNTVQGHSC 502
Query: 281 -----QCPTGQACQAGTCELGCRQNEECSGQMICA------GSKCTGWVEE 320
G C+A CE GCR C C GS C ++E
Sbjct: 503 TCKPGYVGNGTICRA-FCEEGCRYGGTCVAPNKCVCPSGFTGSHCEKDIDE 552
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.492
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,317,388
Number of Sequences: 539616
Number of extensions: 6354837
Number of successful extensions: 18287
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 719
Number of HSP's that attempted gapping in prelim test: 12749
Number of HSP's gapped (non-prelim): 3405
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)