RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9427
         (324 letters)



>gnl|CDD|235034 PRK02395, PRK02395, hypothetical protein; Provisional.
          Length = 279

 Score = 32.0 bits (73), Expect = 0.34
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 81  DSGACGTNAVCIPEDHRPVCHC-PVGTHPSPSPDVHCARESNLCRDSNPC---------H 130
             G           D + V +  PVGTHP+   DV  AR  ++  D +           H
Sbjct: 85  HDGPVADRGTLRALDGKTVHYTGPVGTHPA-MADVIAARARSVTGDPDVGEDTALAVVGH 143

Query: 131 PTARCEDTGAT 141
            T R E++   
Sbjct: 144 GTERNENSAKA 154


>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family.  In
           Brassicaceae, self-incompatible plants have a
           self/non-self recognition system. This is
           sporophytically controlled by multiple alleles at a
           single locus (S). S-locus glycoproteins, as well as
           S-receptor kinases, are in linkage with the S-alleles.
          Length = 110

 Score = 29.9 bits (68), Expect = 0.66
 Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 192 GACGPNALCRAVGKRPVCACPDGF 215
           G CGP   C  V   P C C  GF
Sbjct: 84  GRCGPYGYC-DVNTSPKCNCIKGF 106


>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
          Length = 329

 Score = 29.1 bits (66), Expect = 3.1
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 134 RCEDTGATNGKVVCSC 149
           +C+DTG  NGK  CSC
Sbjct: 103 KCKDTGFINGK-KCSC 117


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.492 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,721,101
Number of extensions: 1257047
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 92
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)