RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9427
(324 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 35.2 bits (80), Expect = 0.026
Identities = 41/284 (14%), Positives = 66/284 (23%), Gaps = 23/284 (8%)
Query: 39 CPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPACDSGACGTNAVCIPEDHRP 98
C +V D + +C + T ++ AC + C
Sbjct: 118 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 177
Query: 99 VCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARC------EDTGATNGKVVCSCPEL 152
C G + C+ C H + RC +D V +C
Sbjct: 178 PQRCR-GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPD 236
Query: 153 SVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGA---CGPNALCRAVGKRPVC 209
C+ + + DC S G V++C+G + C + VC
Sbjct: 237 EFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGEC--ITLDKVC 293
Query: 210 ACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCIGGRCRVA----------CLSHS 259
E C + IG C C
Sbjct: 294 NMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDID 353
Query: 260 DCSEGERCISSLCQSPCTSHSQCPTGQACQAGTCELGCRQNEEC 303
+C + + C QC G T +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 397
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 34.8 bits (79), Expect = 0.036
Identities = 21/119 (17%), Positives = 24/119 (20%), Gaps = 10/119 (8%)
Query: 80 CDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDT- 138
C G + VC C CP G C D + C C
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ---------RRCEDIDECQDPDTCSQLC 53
Query: 139 GATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGACGPN 197
G C C E DP+ C G R
Sbjct: 54 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Score = 31.7 bits (71), Expect = 0.28
Identities = 19/139 (13%), Positives = 31/139 (22%), Gaps = 4/139 (2%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSH 74
N C + G + VC C CP G + C CS +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 75 TCI----PACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCH 130
C D AV V + + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 131 PTARCEDTGATNGKVVCSC 149
+ + +++CS
Sbjct: 121 VASNRIYWSDLSQRMICST 139
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 34.4 bits (78), Expect = 0.044
Identities = 27/158 (17%), Positives = 42/158 (26%), Gaps = 4/158 (2%)
Query: 162 CVPQGQCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCAC---PDGFSAV 218
+ + P+ D P + C + +C +
Sbjct: 138 YIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTEN 197
Query: 219 GGEARVGCFREMSACAGDQECLAGEEKCIGGRCRVACLSHSDCSEGERCIS-SLCQSPCT 277
C SA D C+A G C AC ++ EG RC+ C + +
Sbjct: 198 NECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILS 257
Query: 278 SHSQCPTGQACQAGTCELGCRQNEECSGQMICAGSKCT 315
+ S G G C C +G C
Sbjct: 258 AESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCE 295
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 33.6 bits (77), Expect = 0.047
Identities = 21/143 (14%), Positives = 32/143 (22%), Gaps = 21/143 (14%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPPGSYVG-----DPNIECRQVPCVHNHDCS---TS 66
+ C+ C C E C C G + G C + C S
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEG-FEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101
Query: 67 HACD-------LLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARE 119
C + CG + + G +PD +
Sbjct: 102 VVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGE----APDSITWKP 157
Query: 120 SNLCRDSNPCHPTARCEDTGATN 142
+ D +P D T
Sbjct: 158 YDAA-DLDPTENPFDLLDFNQTQ 179
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 34.0 bits (77), Expect = 0.072
Identities = 44/303 (14%), Positives = 71/303 (23%), Gaps = 14/303 (4%)
Query: 13 CWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLL 72
C + D SC V + C P + D + +C C +
Sbjct: 113 CLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 172
Query: 73 SHTCIPACDSGACGTNAVCIPEDHR--PVCHCPVGTHPSPSPDVHCARESNLCRDSNPCH 130
S C + CI R C + C + C D N H
Sbjct: 173 SSPCSAFEF---HCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH 229
Query: 131 PTARCEDT-------GATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSG 183
+ +C+ V C + + C+ + DC S
Sbjct: 230 GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI 289
Query: 184 GQCVSV--CQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLA 241
+C + G + +C + C CPDGF V Q C+
Sbjct: 290 KECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN 349
Query: 242 GEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTGQACQAGTCELGCRQNE 301
E L + + + T + + R
Sbjct: 350 LEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 409
Query: 302 ECS 304
Sbjct: 410 ALD 412
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 33.8 bits (76), Expect = 0.076
Identities = 32/181 (17%), Positives = 49/181 (27%), Gaps = 25/181 (13%)
Query: 109 SPSPDVHCARESNLCRDSNPCHPTARCEDT-GATNGKVVCSCPELSVGDPYKTGCVPQGQ 167
+ P AR + S ARC + + + + + C Q
Sbjct: 1 AAGPGAAAARRLDESL-SAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQ 59
Query: 168 CPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCF 227
C + C S QC S C+ F E C
Sbjct: 60 CSKCLEPCKESGDLRKHQCQSFCE---------------------PLFPKKSYECLTSCE 98
Query: 228 REMSACAGDQ-ECLAGEEKC-IGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTG 285
Q +C A E+ C +C ++CS ++C S+ C C G
Sbjct: 99 FLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKG 158
Query: 286 Q 286
Sbjct: 159 V 159
Score = 31.9 bits (71), Expect = 0.33
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 233 CAGDQECLAGEEKC------IGGRCRVACLSHSDCSEGERCISS---LCQSPCTSHSQCP 283
C ++C E C +C+ C + C++S L CP
Sbjct: 54 CQNHKQCSKCLEPCKESGDLRKHQCQSFC-EPLFPKKSYECLTSCEFLKYILLVKQGDCP 112
Query: 284 TGQ--ACQAGTCELGCRQNEECSGQMICAGSKCTGWVEELCI 323
+ + A C C + ECSG C + C +
Sbjct: 113 APEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKT 154
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 33.5 bits (76), Expect = 0.077
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 167 QCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFS 216
PRG C ++ +GG CQ C P + CACPDG
Sbjct: 262 TQPRGVNWCERTTLSNGG-----CQYLCLPAPQINPHSPKFTCACPDGML 306
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for
structural genomics, protein structure initiative,
PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium
hafniense}
Length = 189
Score = 32.7 bits (75), Expect = 0.10
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVHCARESNL 122
PE + C +G H + + H + +
Sbjct: 156 FPEGYAFGCSVLLG-HANTTKPPHVPDKDKI 185
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc
9343}
Length = 190
Score = 31.9 bits (73), Expect = 0.14
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVH 115
+PE+H+ +G + + +
Sbjct: 155 VPENHKVYGCVALG-YKAEGALLK 177
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 32.4 bits (73), Expect = 0.16
Identities = 19/129 (14%), Positives = 28/129 (21%), Gaps = 5/129 (3%)
Query: 12 TCWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIEC-RQVPCVHNHDCSTSHACD 70
T +C+ + G C + +C C G + + C C C S C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC--SQGCT 58
Query: 71 LLSHTCIPACDSGA--CGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNP 128
C++G C PV L N
Sbjct: 59 NSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 129 CHPTARCED 137
Sbjct: 119 IALDFHHRR 127
Score = 29.4 bits (65), Expect = 1.5
Identities = 18/115 (15%), Positives = 25/115 (21%), Gaps = 7/115 (6%)
Query: 80 CDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTG 139
C+ G C C C G + D ++ N C + C
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQGCTN---- 59
Query: 140 ATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCVSVCQGAC 194
+ G C C P + C G P R
Sbjct: 60 -SEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN 113
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.6 bits (71), Expect = 0.38
Identities = 44/320 (13%), Positives = 66/320 (20%), Gaps = 33/320 (10%)
Query: 20 VSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPA 79
V NA+ FC G + ++
Sbjct: 345 VFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSF 404
Query: 80 CDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCR------------DSN 127
T+ V + + C C + E +CR +
Sbjct: 405 VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQ 464
Query: 128 PCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGGQCV 187
N ++CS GD C+ G C C
Sbjct: 465 GRSSQELEGSCRKDNNSIICSGL----GDCVCGQCLCHTSDVPGKLIYGQYCECDTINCE 520
Query: 188 SVCQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGDQECLAGEEKCI 247
CG + C C GF + ++ + G +C
Sbjct: 521 RYNGQVCGGPGRGLCFCGK--CRCHPGFEGSACQCERTTEGCLNPRRVECS---GRGRCR 575
Query: 248 GGRCRVACLSHSDCSEGERC-ISSLCQSPCTSHSQCPTGQACQAG----TCELGCRQNEE 302
C + C C SPC + C + G C C
Sbjct: 576 CNVCEC-----HSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAAC--PGL 628
Query: 303 CSGQMICAGSKCTGWVEELC 322
G C E C
Sbjct: 629 QLSNNPVKGRTCKERDSEGC 648
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 31.6 bits (71), Expect = 0.43
Identities = 51/329 (15%), Positives = 82/329 (24%), Gaps = 43/329 (13%)
Query: 9 LTLTCWNSCDGVSCGVNAVC---VVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCST 65
+ L + + +S NA C V C +IE + C +
Sbjct: 355 VELEVRDLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEK-- 412
Query: 66 SHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHCARESNLCRD 125
G + V + D C + + + E +CR
Sbjct: 413 ----------SFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCR- 461
Query: 126 SNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSR----- 180
C P + S + + C +G+C G C S
Sbjct: 462 ---CGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITG 518
Query: 181 ----CSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSACAGD 236
C CV C + C C C ++ G + +
Sbjct: 519 KYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWT--------GYYCNCTTRTDT 566
Query: 237 QECLAGEEKCIGGRCRV-ACLSHSDCSEGERC-ISSLCQSPCTSHSQCPTGQACQAGTCE 294
G G+C +C+ S G+ C C CT +C + G
Sbjct: 567 CMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALH 626
Query: 295 LGCRQNEECSGQMICAGSKC-TGWVEELC 322
N C ++ TG C
Sbjct: 627 DENTCNRYCRDEIESVKELKDTGKDAVNC 655
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 0.44
Identities = 13/56 (23%), Positives = 18/56 (32%)
Query: 61 HDCSTSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDVHC 116
ST+ S C S C N +C +R VC C + S +
Sbjct: 603 EVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREA 658
Score = 29.0 bits (64), Expect = 2.9
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 61 HDCSTSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCP 103
D ++ + G C VC D + VC C
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Score = 29.0 bits (64), Expect = 2.9
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 12 TCWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHN 60
+G C VC V + +A C C + G + + +
Sbjct: 188 EAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRG-KDCSQGKEEYIAT 235
Score = 27.9 bits (61), Expect = 6.8
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHAC 69
+C SC VC+ C C S+ G C +
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPL---CNDPGTTYIFSKGGGQIT 1069
Score = 27.5 bits (60), Expect = 7.2
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 78 PACDSGACGTNAVCIPEDHRPVCHCPVGTHPSP 110
C +C VC+ + C C + + P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP 1050
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.7 bits (69), Expect = 0.60
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 13 CWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSH 67
+C SC VC+ C C S+ G P + +
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG-PLCNDPGTTYIFSKGGGQIT 237
Score = 28.8 bits (64), Expect = 2.5
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 76 CIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSP 110
C +C VC+ + C C + + P
Sbjct: 184 PSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP 218
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur
genomics, joint center for structural genomics, JCSG;
HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 29.5 bits (67), Expect = 0.95
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVH 115
+PE+ P+C P G +P+
Sbjct: 140 LPENILPLCVIPFG-YPATKEQPK 162
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A*
3to0_A*
Length = 259
Score = 29.8 bits (67), Expect = 0.95
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDV 114
P + + PVG +PS V
Sbjct: 217 RPSHEKLLVLLPVG-YPSRDATV 238
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.2 bits (68), Expect = 1.1
Identities = 14/140 (10%), Positives = 33/140 (23%), Gaps = 10/140 (7%)
Query: 46 GDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVG 105
G P+ ++ + + + C +
Sbjct: 263 GLPSTRIKKSKALSGFSLQSCRHSIPV--FCHSSFYHDTDFLGEELDIVA----AKSHEA 316
Query: 106 THPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQ 165
+ V C + ++ +C ++NG S ++ G +G +
Sbjct: 317 CQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNG----SPTKILHGRGGISGYTLR 372
Query: 166 GQCPRGDADCPPSSRCSGGQ 185
+ R GG
Sbjct: 373 LCKMDNECTTKIKPRIVGGT 392
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 28.7 bits (65), Expect = 1.7
Identities = 4/21 (19%), Positives = 6/21 (28%), Gaps = 1/21 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSP 112
P G HP+ +
Sbjct: 139 DPARLSFEAAIAAG-HPAQNG 158
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.5 bits (65), Expect = 1.7
Identities = 23/165 (13%), Positives = 32/165 (19%), Gaps = 11/165 (6%)
Query: 66 SHACDLLSHTCIPACDSGACGTN-----AVCIPEDHRPVC--HCPVGTHPSPSPDVHCAR 118
SH C C C + C C CP +
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 119 ESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVP-QGQCPR---GDAD 174
C N K + CP + C P G CP+
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEG 317
Query: 175 CPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFSAVG 219
+ Q + C G + G +
Sbjct: 318 EKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIE 362
Score = 27.2 bits (59), Expect = 9.6
Identities = 25/172 (14%), Positives = 37/172 (21%), Gaps = 8/172 (4%)
Query: 124 RDSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSG 183
D+ C G TN + + C C C
Sbjct: 150 DDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCH 209
Query: 184 GQCVSVCQGACGPNA--LCRAVGKRPVC--ACPDGFSAVGG---EARVGCFREMSACAGD 236
+C+ C P CR C CP + C C
Sbjct: 210 SECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNS 269
Query: 237 QECLAGEEKCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQCPTGQAC 288
+ + +C C S + + C PC G+
Sbjct: 270 RRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP-CLGPCPKVCHLLEGEKT 320
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase,
vitamin B12, dithionite, charge transfer complex,
flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti}
PDB: 2isj_A* 2isl_A*
Length = 230
Score = 28.9 bits (65), Expect = 1.9
Identities = 4/24 (16%), Positives = 6/24 (25%), Gaps = 1/24 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVH 115
IP+ V +G
Sbjct: 183 IPDHVEIVAWLCLG-FVDRLYQEP 205
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE FMN EPE; 1.40A {Clostridium
acetobutylicum}
Length = 168
Score = 28.7 bits (65), Expect = 1.9
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPD 113
+ + +P C VG +P S +
Sbjct: 132 LKSNIKPFCVISVG-YPENSEN 152
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 29.2 bits (66), Expect = 1.9
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 80 CDSGACGTNAVCIPEDHRPVCHC 102
C+ G CG +V + D + V C
Sbjct: 40 CEQGQCGACSVIL--DGKVVRAC 60
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural
genomics, joint center for structural genomics; HET: MSE
FMN; 1.86A {Parabacteroides distasonis}
Length = 172
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVH 115
+P+ P+ PVG +P
Sbjct: 137 LPDHIMPLNVIPVG-YPMQKETPK 159
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 28.8 bits (65), Expect = 2.8
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 80 CDSGACGTNAVCIPEDHRPVCHC 102
C G CG V + D + V C
Sbjct: 40 CGKGQCGACTVIL--DGKVVRAC 60
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 28.5 bits (64), Expect = 3.2
Identities = 18/98 (18%), Positives = 25/98 (25%), Gaps = 2/98 (2%)
Query: 15 NSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSH 74
+ C C N C + C C PG Y G N E + C H C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPG-YEGS-NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 75 TCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSP 112
+ +C G H + +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 27.4 bits (61), Expect = 6.0
Identities = 19/97 (19%), Positives = 23/97 (23%), Gaps = 7/97 (7%)
Query: 125 DSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSRCSGG 184
S PC C+D+ C+C G + P C C G
Sbjct: 9 ISQPCLHNGSCQDSI---WGYTCTCSPGYEGSNCE--LAKNECHPERTDGC--QHFCLPG 61
Query: 185 QCVSVCQGACGPNALCRAVGKRPVCACPDGFSAVGGE 221
Q C A G P C G
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 3.2
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 70 DLLSHTCIPACDSGACGTNAVCIP-EDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSN- 127
+ + + C NA C D C +G C S C ++N
Sbjct: 3 EASNMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV---GGKCVPASITCEENNG 59
Query: 128 PCHPTARCEDTGATNGKVVCSCPE 151
C P A C +V C C +
Sbjct: 60 GCAPEAECTMDD--KKEVECKCTK 81
>3h4o_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630}
PDB: 3koq_A*
Length = 191
Score = 28.0 bits (63), Expect = 3.3
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVHCARESN 121
+P++ P+ +G + S P+ E
Sbjct: 150 LPDNLEPINILLMG-YESKIPESPERHEKT 178
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.3 bits (62), Expect = 3.5
Identities = 28/213 (13%), Positives = 43/213 (20%), Gaps = 26/213 (12%)
Query: 5 FVFYLTLTCWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVHNHDCS 64
+ YL W+ + V +++E PG+ G N + C
Sbjct: 124 ELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW 183
Query: 65 TSHACDLLSHTCIPACDSGACGTNAVCIPEDHRPVC-----------------------H 101
T C C C S C +C + C
Sbjct: 184 THSHCQK---VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVET 240
Query: 102 CPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPELSVGDPYKTG 161
CP + C N K + CP +
Sbjct: 241 CPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL 300
Query: 162 CVPQGQCPRGDADCPPSSRCSGGQCVSVCQGAC 194
C P + + C
Sbjct: 301 CTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC 333
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 28.3 bits (63), Expect = 3.7
Identities = 17/123 (13%), Positives = 25/123 (20%), Gaps = 10/123 (8%)
Query: 107 HPSPSPDVHCARESNLCRDSNPCHPTARC--EDTGATNGKVVCSCPELSVGDPYKTGCVP 164
H + V N CR+ + C G + E +V + G
Sbjct: 50 HQDFNSAVQL--VENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDE 107
Query: 165 QG-QCPRGDADCPPSSRCSGGQCVSVCQGACGPNALCRAVGKRPVCACPDGFSA-----V 218
+ G + CG L S V
Sbjct: 108 DSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIV 167
Query: 219 GGE 221
G
Sbjct: 168 EGS 170
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 26.9 bits (59), Expect = 3.7
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 79 ACDSGACGTNAVCIP-EDHRPVCHCPVGTHPSPSPDVHCARESNLCRDSN-PCHPTARCE 136
C NA C D C + + C+D N C P A C+
Sbjct: 6 RCIDTNVPENAACYRYLDGTEEWRCLLYF--KEDAGKCVPAPNMTCKDKNGGCAPEAECK 63
Query: 137 DTGATNGKVVCSCPE 151
++VC C +
Sbjct: 64 MND--KNEIVCKCTK 76
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 28.2 bits (62), Expect = 3.9
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 98 PVCHCPVGTHPSPSPDVHCARESNLCRDSNPCHPTARCEDTGA 140
P+ HC + +++ + C D PC P + + +
Sbjct: 2 PLAHC------DGRGGLKLSQDMDTCEDILPCVPFSVAKSVKS 38
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 28.0 bits (62), Expect = 4.5
Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 20/129 (15%)
Query: 128 PCHPTARCEDTGATNGKVVCSCPELSVGDPYKTGCVPQGQCPRGDADCPPSSR------- 180
C + +V C + TGC + PP R
Sbjct: 533 NCSVHTAPPAEASMGTRVHCHQQGHVL-----TGCSSHWEVEDLGTHKPPVLRPRGQPNQ 587
Query: 181 CSGGQCVSVCQGAC-GPNALCR-------AVGKRPVCACPDGFSAVGGEARVGCFREMSA 232
C G + S+ C P C+ A ++ AC +G++ G A G + A
Sbjct: 588 CVGHREASIHASCCHAPGLECKVKEHGIPAPQEQVTVACEEGWTLTGCSALPGTSHVLGA 647
Query: 233 CAGDQECLA 241
A D C+
Sbjct: 648 YAVDNTCVV 656
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 27.6 bits (60), Expect = 5.3
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 15 NSCDGVSCGVNAVCVVN-NHEARCFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLS 73
C C VC ++ N+ C C + P E +V N + +C +
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNK--TFDSSCHFFA 61
Query: 74 HTCI 77
C
Sbjct: 62 TKCT 65
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 28.0 bits (61), Expect = 5.4
Identities = 22/112 (19%), Positives = 29/112 (25%), Gaps = 29/112 (25%)
Query: 176 PPSSRCSGGQCVSV--CQGACGPNALCRAVGKRPVCACPDGFSAVGGEARVGCFREMSAC 233
PP+ + C+G C P C C + C S C
Sbjct: 7 PPTVLSDSPWTNTSGSCKGRCFE----LQEVGPPDCRCDNL-----------CKSYSSCC 51
Query: 234 AG-DQECLAGEE--KCIGGRCRVACLSHSDCSEGERCISSLCQSPCTSHSQC 282
D+ CL +C RC + C C C S C
Sbjct: 52 HDFDELCLKTARGWECTKDRCGEVRNEENACH---------CSEDCLSRGDC 94
>4dn2_A Nitroreductase; structural genomics, protein structure initiative,
NEW YORK structural genomix research consortium, nysgrc;
HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Length = 208
Score = 27.3 bits (61), Expect = 5.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVHCAR 118
IP + R V P+G +P P +R
Sbjct: 169 IPAELRIVGLFPLG-YPLEGPKAGPSR 194
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: FMN UNL; 1.70A {Porphyromonas
gingivalis W83}
Length = 198
Score = 26.9 bits (60), Expect = 8.4
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 92 IPEDHRPVCHCPVGTHPSPSPDVHCARE 119
IP PV +G + P+ A
Sbjct: 159 IPSHMTPVSILALG-YGDPTVPPREAFN 185
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base
excision, helix-hairpin-helix, hydrolase; HET: PGE;
1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A
1p7m_A*
Length = 183
Score = 26.7 bits (60), Expect = 8.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 26 AVCVVNNHEARCFCPP 41
A +VN+H CFC P
Sbjct: 168 ACGLVNDHITGCFCHP 183
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 26.1 bits (58), Expect = 9.4
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 13/106 (12%)
Query: 51 ECRQVPCVHNHDCSTSHACD-----LLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVG 105
EC + C + D + C++ C C C C G
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEG 70
Query: 106 THPSPSPDVHCARESNLCRDSNPCHPTARCEDTGATNGKVVCSCPE 151
+C + + C + VVCSC
Sbjct: 71 FE-----GKNCELFTRKLCSLDNGDCDQFCHEEQ---NSVVCSCAR 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.492
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,990,194
Number of extensions: 314182
Number of successful extensions: 2379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 566
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)