RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9427
         (324 letters)



>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
           {Vibrio harveyi [TaxId: 669]}
          Length = 239

 Score = 29.0 bits (64), Expect = 0.68
 Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 13/91 (14%)

Query: 37  CFCPPGSYVGDPNIECRQVPCVHNHDCSTSHACDLLSHTCIPACDSGACGTNAV------ 90
           C         +P+++             +             +   G      +      
Sbjct: 79  CIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAA-ESMGLGGVYIGGLRNSAAQ 137

Query: 91  -----CIPEDHRPVCHCPVGTHPSPSPDVHC 116
                 +PE+   +    +G HP  +P+V  
Sbjct: 138 VDELLGLPENSAVLFGMCLG-HPDQNPEVKP 167


>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
           {Bacillus subtilis [TaxId: 1423]}
          Length = 249

 Score = 27.9 bits (61), Expect = 1.4
 Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 92  IPEDHRPVCHCPVGTHPSPSPDVHC 116
           +P+   P+    +G HP+       
Sbjct: 151 LPKYVFPLSGLVIG-HPADRSAKKP 174


>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844
           {Bacillus cereus [TaxId: 1396]}
          Length = 199

 Score = 27.5 bits (60), Expect = 1.6
 Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 4/93 (4%)

Query: 23  GVNAVCVVNNHEARCFCPPGSYVGDPNIECRQVPCVH---NHDCSTSHACDLLSHTCIPA 79
           GV  V    +          + +                 +       A  + +      
Sbjct: 93  GVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYN 152

Query: 80  CDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSP 112
               A       IP +   V   P G  P+  P
Sbjct: 153 PIVDAEVKETWNIPAEWSLVGQMPFG-EPNEQP 184


>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
           {Escherichia coli, major form, NfsA [TaxId: 562]}
          Length = 240

 Score = 27.8 bits (61), Expect = 1.7
 Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 89  AVCIPEDHRPVCHCPVGTHPSPSPDV 114
            + +P+   P+    +G  P+ +PD+
Sbjct: 142 LLKLPQHVLPLFGLCLG-WPADNPDL 166


>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
           protein, N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 106

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 75  TCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSPDV 114
           +   +C  G CG++ + +   +   C  P+     P   +
Sbjct: 50  SFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKI 89


>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag)
           {Escherichia coli [TaxId: 562]}
          Length = 187

 Score = 26.0 bits (57), Expect = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 26  AVCVVNNHEARCFCPPGS 43
           A  +VN+H   C C PG+
Sbjct: 168 ACGLVNDHVVGCCCYPGN 185


>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
           coli [TaxId: 562]}
          Length = 269

 Score = 26.0 bits (55), Expect = 6.9
 Identities = 8/109 (7%), Positives = 21/109 (19%), Gaps = 8/109 (7%)

Query: 13  CWNSCDGVSCGVNAVCVVNNHEARCFCPPGSYVGDPNIECRQV------PCVHNHDCSTS 66
                       N        +++         G P +    +              +  
Sbjct: 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD 175

Query: 67  HACDLLSHTCIPACDSGACGTNAV--CIPEDHRPVCHCPVGTHPSPSPD 113
                     +    +G     A         + +    +   PS +P+
Sbjct: 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN 224


>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 201

 Score = 25.3 bits (54), Expect = 8.3
 Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 1/46 (2%)

Query: 67  HACDLLSHTCIPACDSGACGTNAVCIPEDHRPVCHCPVGTHPSPSP 112
              D    + I      +     + I +  RP     VG +     
Sbjct: 142 ALTDQGIGSNIILGFDKSKVNEVLEIEDRFRPELLITVG-YTDEKL 186


>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
           {Vibrio fischeri [TaxId: 668]}
          Length = 217

 Score = 25.3 bits (54), Expect = 9.8
 Identities = 4/23 (17%), Positives = 8/23 (34%), Gaps = 1/23 (4%)

Query: 92  IPEDHRPVCHCPVGTHPSPSPDV 114
             + +       +G +  PS D 
Sbjct: 178 ELKGYECHVALAIG-YHHPSEDY 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.492 

Gapped
Lambda     K      H
   0.267   0.0376    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,315,937
Number of extensions: 72092
Number of successful extensions: 535
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 203
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.1 bits)