BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9430
(255 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 203
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 120/150 (80%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKL YLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+RGP+ +RAP+RIFW+TVRGM PHK RG AL RLKV++GIPP Y +++R+ VP AL+
Sbjct: 67 SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
V LKP R + +GR++HEVGWKY+ + L
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATL 156
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 67/77 (87%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
+++DGRGHLLGRLA+IVAK +L G +VVVVR E +NISGNF+RNKL YLAFL KR N NP
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 69 ARGPFHYRAPARIFWKT 85
+RGP+ +RAP+RIFW+T
Sbjct: 67 SRGPYDFRAPSRIFWRT 83
>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 199
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 117/150 (78%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+RAP+RIF+K +RGM HK RG AL+RLKV+EGIPP Y +++R+ VP ALR
Sbjct: 67 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 126
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
+ LKPGR Y ++G++S VGWKY+ +V L
Sbjct: 127 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKL 156
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 69 ARGPFHYRAPARIFWKT 85
RGPFH+RAP+RIF+K
Sbjct: 67 TRGPFHFRAPSRIFYKA 83
>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 178
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 112/142 (78%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 60
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+RAP+RIF+K +RGM HK RG AL+RLKV+EGIPP Y +++R+ VP ALR
Sbjct: 61 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 120
Query: 207 VCLKPGRSYCSVGRISHEVGWK 228
+ LKPGR Y ++G++S VGWK
Sbjct: 121 LRLKPGRKYTTLGKLSTSVGWK 142
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 60
Query: 69 ARGPFHYRAPARIFWKT 85
RGPFH+RAP+RIF+K
Sbjct: 61 TRGPFHFRAPSRIFYKA 77
>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 146
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 111/141 (78%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 6 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RGPFH+RAP+RIF+K +RGM HK RG AL+RLKV+EGIPP Y +++R+ VP ALR
Sbjct: 66 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 125
Query: 207 VCLKPGRSYCSVGRISHEVGW 227
+ LKPGR Y ++G++S VGW
Sbjct: 126 LRLKPGRKYTTLGKLSTSVGW 146
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
++IDG+GHL+GRLAS+VAK +LNG ++VVVRAE LNISG FFRNKLKY FL K N
Sbjct: 6 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 69 ARGPFHYRAPARIFWKT 85
RGPFH+RAP+RIF+K
Sbjct: 66 TRGPFHFRAPSRIFYKA 82
>pdb|3IZR|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 206
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 84/150 (56%), Positives = 108/150 (72%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
+++D R H+LGRLASIVAK +LNG RVVVVR E + +SG R K+KYL FL KR N P
Sbjct: 12 VVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
+ GP H+RAPA+I W+T+RGM PHK RG AL RLK YEG+PP Y R +R+ +P AL+
Sbjct: 72 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
+ L+PG YC +G++S EVGW Y +R L
Sbjct: 132 LRLQPGHRYCLLGQLSKEVGWNYADTIREL 161
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 61/83 (73%)
Query: 3 GISRKPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNK 62
G+ K +++D R H+LGRLASIVAK +LNG RVVVVR E + +SG R K+KYL FL K
Sbjct: 6 GVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRK 65
Query: 63 RCNVNPARGPFHYRAPARIFWKT 85
R N P+ GP H+RAPA+I W+T
Sbjct: 66 RMNTKPSHGPIHFRAPAKILWRT 88
>pdb|4A17|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|I Chain I, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 198
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 107/150 (71%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
++ID +GHLLGRLAS VAK +L+G R+VVVR E +NISG+ FRN++K+ FLNK N NP
Sbjct: 6 VVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNP 65
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRT 206
RG H+RAP+RIFW+ VRGM PHK +GA AL+RLK++EGIP Y R ++ V AL+
Sbjct: 66 RRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKV 125
Query: 207 VCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
L+ R C +G +S VGW +T++ L
Sbjct: 126 QRLRNSRPVCKLGDLSASVGWGKQTLIEKL 155
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 62/79 (78%)
Query: 7 KPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNV 66
K ++ID +GHLLGRLAS VAK +L+G R+VVVR E +NISG+ FRN++K+ FLNK N
Sbjct: 4 KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNH 63
Query: 67 NPARGPFHYRAPARIFWKT 85
NP RG H+RAP+RIFW+
Sbjct: 64 NPRRGVQHFRAPSRIFWRA 82
>pdb|4B6A|O Chain O, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 217
Score = 164 bits (414), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 115/160 (71%), Gaps = 10/160 (6%)
Query: 87 ILIDG--RGHLL-GRLAS--IVAKT-ILNGNRVVVVRAEL-LNISGNFFRNKLKYLAFLN 139
++ID GHLL GRLAS IVAK +LNG ++VVVRAE LNISG FFRNKLKY FL
Sbjct: 7 VVIDAGKDGHLLVGRLASTVIVAKQLVLNGQKIVVVRAEAELNISGEFFRNKLKYHDFLR 66
Query: 140 KRCNVNPARGPFHYRAPARI-FWKTV-RGMTPHKLDRGAKALKRLK-VYEGIPPKYARRQ 196
K N RGPFH+RAP+RI F+K + RGM HK RG AL+RLK V+EGIPP Y +++
Sbjct: 67 KATAFNKTRGPFHFRAPSRILFYKAILRGMVSHKTARGKAALERLKIVFEGIPPPYDKKK 126
Query: 197 RLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
R+ VP ALR + LKPGR Y ++G++S VGWKY+ +V L
Sbjct: 127 RVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKL 166
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 61/87 (70%), Gaps = 7/87 (8%)
Query: 9 ILIDG--RGHLL-GRLAS--IVAKT-ILNGNRVVVVRAEL-LNISGNFFRNKLKYLAFLN 61
++ID GHLL GRLAS IVAK +LNG ++VVVRAE LNISG FFRNKLKY FL
Sbjct: 7 VVIDAGKDGHLLVGRLASTVIVAKQLVLNGQKIVVVRAEAELNISGEFFRNKLKYHDFLR 66
Query: 62 KRCNVNPARGPFHYRAPARIFWKTPIL 88
K N RGPFH+RAP+RI + IL
Sbjct: 67 KATAFNKTRGPFHFRAPSRILFYKAIL 93
>pdb|3U5E|O Chain O, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|O Chain O, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
Length = 217
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/160 (56%), Positives = 113/160 (70%), Gaps = 10/160 (6%)
Query: 87 ILIDGR--GHL-LGRLAS---IVAKTILNGNRVVVVRAE-LLNISGNFFRNKLKYLAFLN 139
++IDG HL LGRLAS I + +LNG ++VVVRAE LNISG FFRNKLKY FL
Sbjct: 7 VVIDGAKGDHLVLGRLASVTVIAKQLVLNGQKIVVVRAEEALNISGEFFRNKLKYHDFLR 66
Query: 140 KRCNVNPARGPFHYRAPARIF-WKT-VRGMTPHKLDRGAKALKRLKV-YEGIPPKYARRQ 196
K N RGPFH+RAP+RIF +K +RGM HK RG AL+RLKV +EGIPP Y +++
Sbjct: 67 KATAFNKTRGPFHFRAPSRIFLYKALIRGMVSHKTARGKAALERLKVIFEGIPPPYDKKK 126
Query: 197 RLCVPTALRTVCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
R+ VP ALR + LKPGR Y ++G++S VGWKY+ +V L
Sbjct: 127 RVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKL 166
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 61/87 (70%), Gaps = 8/87 (9%)
Query: 4 ISRKPIL-IDGR--GHL-LGRLAS---IVAKTILNGNRVVVVRAE-LLNISGNFFRNKLK 55
+S +P++ IDG HL LGRLAS I + +LNG ++VVVRAE LNISG FFRNKLK
Sbjct: 1 VSEQPVVVIDGAKGDHLVLGRLASVTVIAKQLVLNGQKIVVVRAEEALNISGEFFRNKLK 60
Query: 56 YLAFLNKRCNVNPARGPFHYRAPARIF 82
Y FL K N RGPFH+RAP+RIF
Sbjct: 61 YHDFLRKATAFNKTRGPFHFRAPSRIF 87
>pdb|3ZF7|O Chain O, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 222
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 87 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 146
I+ID + H+LGR A+IVAK +L G ++ VVR E L I+G+ RNK+KYL FL KR NP
Sbjct: 25 IVIDLKDHVLGRAAAIVAKQLLLGKKITVVRCEKLTIAGSEIRNKIKYLQFLRKRKLSNP 84
Query: 147 ARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARR-QRLCVPTALR 205
GPFH+R+P+ +F +TVR M P RG +AL++L YEG+P R R+ +P A R
Sbjct: 85 KLGPFHHRSPSDVFIRTVRSMLPRYTKRGQRALRQLVAYEGVPVNVVRTGGRVVIPKAQR 144
Query: 206 TVCLKPGRSYCSVGRISHEVGWKYKTIVRHL 236
C + R + +G + VGWKY +V L
Sbjct: 145 HNCYRNERRFTVLGNMCKHVGWKYSDVVEKL 175
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 9 ILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNP 68
I+ID + H+LGR A+IVAK +L G ++ VVR E L I+G+ RNK+KYL FL KR NP
Sbjct: 25 IVIDLKDHVLGRAAAIVAKQLLLGKKITVVRCEKLTIAGSEIRNKIKYLQFLRKRKLSNP 84
Query: 69 ARGPFHYRAPARIFWKTPILIDGRGHLLGR--LASIVA------KTILNGNRVVVVRAEL 120
GPFH+R+P+ +F +T + R G+ L +VA + G RVV+ +A+
Sbjct: 85 KLGPFHHRSPSDVFIRTVRSMLPRYTKRGQRALRQLVAYEGVPVNVVRTGGRVVIPKAQ- 143
Query: 121 LNISGNFFRNKLKYLAFLN 139
N +RN+ ++ N
Sbjct: 144 ---RHNCYRNERRFTVLGN 159
>pdb|3J21|I Chain I, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 142
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +T+RGM P K DRG KA KRLKVY GIP ++ ++ + A +
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEAHVSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
+P Y +VG ++ +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>pdb|1J3A|A Chain A, Crystal Structure Of Ribosomal Protein L13 From Pyrococcus
Horikoshii
Length = 142
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 88 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 147
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 148 RGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPTALRTV 207
RGPF+ + I +T+RGM P K DRG KA +RLKVY GIP ++ +Q + A +
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSR 122
Query: 208 CLKPGRSYCSVGRISHEVGWKY 229
+P Y +VG ++ +G K+
Sbjct: 123 LSRP--KYVTVGEVAKFLGGKF 142
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 10 LIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVNPA 69
+I+ G +LGRLAS VAK +L G VV+V AE I+GN KY R NP
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 70 RGPFHYRAPARIFWKT 85
RGPF+ + I +T
Sbjct: 63 RGPFYPKRSDEIVRRT 78
>pdb|1FFK|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1GIY|M Chain M, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1JJ2|I Chain I, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|I Chain I, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|K Chain K, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|K Chain K, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|K Chain K, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|K Chain K, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|K Chain K, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1ML5|MM Chain m, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1K73|K Chain K, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|K Chain K, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|K Chain K, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|K Chain K, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|K Chain K, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|K Chain K, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|K Chain K, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|K Chain K, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|I Chain I, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|I Chain I, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|J Chain J, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|I Chain I, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|J Chain J, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|J Chain J, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|J Chain J, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|J Chain J, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|J Chain J, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|J Chain J, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|J Chain J, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YL3|M Chain M, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|1VQ4|J Chain J, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|J Chain J, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|J Chain J, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|J Chain J, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|J Chain J, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|J Chain J, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|J Chain J, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|J Chain J, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|J Chain J, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|J Chain J, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|J Chain J, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|J Chain J, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2B66|N Chain N, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|N Chain N, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|N Chain N, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2OTJ|J Chain J, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|J Chain J, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|J Chain J, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|J Chain J, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|J Chain J, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|J Chain J, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|J Chain J, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|I Chain I, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|J Chain J, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|J Chain J, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|J Chain J, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|I Chain I, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3I55|J Chain J, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|J Chain J, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|J Chain J, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 145
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+ +++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR
Sbjct: 6 FDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRV 61
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
++ G F+ + P IF +T+RGM PHK RG +A + ++VY G P Y + T
Sbjct: 62 DIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP--YDEDGEVLDGT 119
Query: 203 AL-RTVCLKPGRSYCSVGRISHEVG 226
+L R +K + ++G IS +G
Sbjct: 120 SLDRLSNIK----FVTLGEISETLG 140
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 8 PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVN 67
+++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR ++
Sbjct: 9 DVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIG 64
Query: 68 PARGPFHYRAPARIFWKT 85
G F+ + P IF +T
Sbjct: 65 NDNGYFYPKRPDGIFKRT 82
>pdb|3G4S|J Chain J, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|J Chain J, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|J Chain J, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|I Chain I, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 142
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 11/145 (7%)
Query: 83 WKTPILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRC 142
+ +++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR
Sbjct: 3 FDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRV 58
Query: 143 NVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYARRQRLCVPT 202
++ G F+ + P IF +T+RGM PHK RG +A + ++VY G P Y + T
Sbjct: 59 DIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP--YDEDGEVLDGT 116
Query: 203 AL-RTVCLKPGRSYCSVGRISHEVG 226
+L R +K + ++G IS +G
Sbjct: 117 SLDRLSNIK----FVTLGEISETLG 137
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 8 PILIDGRGHLLGRLASIVAKTILNGNRVVVVRAELLNISGNFFRNKLKYLAFLNKRCNVN 67
+++D R ++GR+AS VA+ L+G V VV AE I+G + KY KR ++
Sbjct: 6 DVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIG 61
Query: 68 PARGPFHYRAPARIFWKT 85
G F+ + P IF +T
Sbjct: 62 NDNGYFYPKRPDGIFKRT 79
>pdb|1VSP|H Chain H, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
Length = 140
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGI--PP 190
+Y + + + P R+ V+GM P K G + KRLKVY G P
Sbjct: 74 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPH 130
Query: 191 KYARRQRLCV 200
+ R ++L V
Sbjct: 131 QAQRPEKLEV 140
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71
>pdb|2J01|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|M Chain M, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|M Chain M, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|M Chain M, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2V47|N Chain N, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|N Chain N, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|N Chain N, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|N Chain N, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|N Chain N, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|N Chain N, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|N Chain N, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|N Chain N, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|N Chain N, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|N Chain N, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|N Chain N, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|N Chain N, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|N Chain N, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|N Chain N, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|M Chain M, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|M Chain M, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|M Chain M, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|M Chain M, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|N Chain N, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|N Chain N, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|N Chain N, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|N Chain N, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|N Chain N, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|N Chain N, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|N Chain N, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|N Chain N, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|N Chain N, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|N Chain N, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|N Chain N, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|N Chain N, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|N Chain N, Ef-Tu Complex 3
pdb|2Y19|N Chain N, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|N Chain N, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|N Chain N, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|N Chain N, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|N Chain N, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|N Chain N, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|N Chain N, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|N Chain N, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|N Chain N, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|N Chain N, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|N Chain N, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|N Chain N, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|N Chain N, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|M Chain M, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|M Chain M, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|M Chain M, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|M Chain M, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 140
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGI--PP 190
+Y + + + P R+ V+GM P K G + KRLKVY G P
Sbjct: 74 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPH 130
Query: 191 KYARRQRLCV 200
+ R ++L V
Sbjct: 131 QAQRPEKLEV 140
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71
>pdb|3MRZ|J Chain J, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|J Chain J, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s)
Length = 139
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 13 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 72
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGI--PP 190
+Y + + + P R+ V+GM P K G + KRLKVY G P
Sbjct: 73 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPH 129
Query: 191 KYARRQRLCV 200
+ R ++L V
Sbjct: 130 QAQRPEKLEV 139
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 13 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 70
>pdb|1VSA|H Chain H, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|3D5B|N Chain N, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|N Chain N, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|N Chain N, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|N Chain N, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400
Length = 163
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 37 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 96
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGI--PP 190
+Y + + + P R+ V+GM P K G + KRLKVY G P
Sbjct: 97 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPH 153
Query: 191 KYARRQRLCV 200
+ R ++L V
Sbjct: 154 QAQRPEKLEV 163
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 37 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 94
>pdb|3TVE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 138
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEG 187
+Y + + + P R+ V+GM P K G + KRLKVY G
Sbjct: 74 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAG 125
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71
>pdb|3PYO|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|J Chain J, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|J Chain J, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 137
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 13 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 72
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEG 187
+Y + + + P R+ V+GM P K G + KRLKVY G
Sbjct: 73 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAG 124
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 13 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 70
>pdb|3FIN|N Chain N, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 139
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 87 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL-- 132
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 133 KYLAFLNKRCNVNPARGPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEG 187
+Y + + + P R+ V+GM P K G + KRLKVY G
Sbjct: 74 RYSGYPGGLKKIPLEK--MLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAG 125
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 9 ILIDGRGHLLGRLASIVAK------------TILNGNRVVVVRAELLNISGNFFRNKL 54
+LID G LGRLA+ +A + G+ VVVV A+ + ++G K+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71
>pdb|3BBO|L Chain L, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 250
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 88 LIDGRGHLLGRLASIVA------------KTILNGNRVVVVRAELLNISGNFFRNKLKYL 135
++D +LGR+AS +A ++ G V+VV A+ + +SG KL Y
Sbjct: 116 VVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL-YR 174
Query: 136 AFLNKRCNVNPAR-GPFHYRAPARIFWKTVRGMTPHKLDRGAKALKRLKVYEGIPPKYAR 194
+ + R P RI VRGM P K G LKVY+G +
Sbjct: 175 RHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRYLFNHLKVYKGAEHPHQA 233
Query: 195 RQRLCVP 201
+Q + +P
Sbjct: 234 QQPIDLP 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,313,194
Number of Sequences: 62578
Number of extensions: 285045
Number of successful extensions: 535
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 45
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)